HHSEARCH alignment of GI: 254780438 and SCOP domain: d1z41a1

Alignment
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}
Probab=93.99  E-value=0.24  Score=27.62  Aligned_cols=126  Identities=13%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----CEEEEEE------CCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf             555333578221333788999998620269-----6389972------54444147999974066146511211102444
Q gi|254780438|r  102 PHQLTSDHGWDFLQNQALLTKTVARLHNLG-----SRISLFA------DGNGNEHSLQAAKLTGADCIELYTGPYGACYN  170 (261)
Q Consensus       102 r~elTTegGldv~~~~~~L~~~i~~l~~~g-----irvSLFI------Dpd~~q~~i~~a~~~Gad~VElhTG~Ya~a~~  170 (261)
                      .+..|-+-|=++.....++.++++.+++..     +|+|..-      +.+.....++...+.|+|.+++..|.|...-.
T Consensus       178 ~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~  257 (337)
T d1z41a1         178 SNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADI  257 (337)
T ss_dssp             TCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             33445444515653026899999877665035634885342234676410446899999998498620122123445554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
Q ss_conf             35643366688999876654156235207898-987799999736996388425999999999
Q gi|254780438|r  171 NPQQERIFLNKLAITAQLAQKMDLQINAGHDL-TIQNIPNLINAIPYISEISVGHAFAATALE  232 (261)
Q Consensus       171 ~~~~~~~el~~i~~aa~~A~~lgL~VnAGHgL-n~~Nl~~~i~~Ip~I~EvsIGHaiIseAl~  232 (261)
                      ....  .....+.+..+.+.  ++-|-+--++ +.+.....++. ...+=|.+|.++|++-=+
T Consensus       258 ~~~~--~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~-g~~D~V~~gR~~iadPd~  315 (337)
T d1z41a1         258 NVFP--GYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQN-GRADLIFIGRELLRDPFF  315 (337)
T ss_dssp             CCCT--TTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHT-TSCSEEEECHHHHHCTTH
T ss_pred             CCCC--CCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHC-CCCCEEHHHHHHHHCCHH
T ss_conf             5687--40078999999866--9308996891999999999987-995650665998869369


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]