HHSEARCH alignment of GI: 254780438 and SCOP domain: d2g0wa1

Alignment
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}
Probab=94.73  E-value=0.16  Score=28.75  Aligned_cols=211  Identities=14%  Similarity=0.118  Sum_probs=103.8

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHHCCCCCCCEEE-EEECC---------------CHHHHHH
Q ss_conf             9989999999974998999824788334-88899999887400013674158-88348---------------5689999
Q gi|254780438|r   24 PNLVHIGKIALQSGASGLTVHPRPDQRH-IRYTDLPEIRRLIDEQFPKAELN-IEGYP---------------NETFLNL   86 (261)
Q Consensus        24 P~~~~~a~~~~~~GadgITvH~R~DrRH-I~~~Dv~~l~~~~~~~~~~~elN-iEg~p---------------~~e~i~i   86 (261)
                      -++.+..+.+-++|-+||=+-.-+.... -...++..+++.+.+.  ++++- +....               ....+++
T Consensus        15 ~~lee~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   92 (275)
T d2g0wa1          15 VSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEH--NMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHM   92 (275)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHT--TCEEEEEECBCCCSSTTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHC--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999999399999970455543345767799999999974--993699850346677806678999999999999


Q ss_pred             HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----HHHHHHHHCCCCEEEECC
Q ss_conf             9850721289710165553335782213337889999986202696389972544441----479999740661465112
Q gi|254780438|r   87 CERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNE----HSLQAAKLTGADCIELYT  162 (261)
Q Consensus        87 a~~ikP~qvtLVPe~r~elTTegGldv~~~~~~L~~~i~~l~~~girvSLFIDpd~~q----~~i~~a~~~Gad~VElhT  162 (261)
                      +.......++..+..+.      ++  ....+.|+...+..++.|  +.+-..+....    ...+....++-+.+=+.-
T Consensus        93 A~~lG~~~v~~~~~~~~------~~--~~~~~~l~~l~~~a~~~g--i~le~~~~~~~~t~~~~~~l~~~v~~~~~g~~~  162 (275)
T d2g0wa1          93 ARLFGVKHINCGLLEKI------PE--EQIIVALGELCDRAEELI--IGLEFMPYSGVADLQAAWRVAEACGRDNAQLIC  162 (275)
T ss_dssp             HHHHTCCEEEECCCSCC------CH--HHHHHHHHHHHHHHTTSE--EEEECCTTSSSCSHHHHHHHHHHHTCTTEEEEE
T ss_pred             HHHHCCCEEECCCCCCH------HH--HHHHHHHHHHHHHHHHCC--EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             99819954731899814------78--999999999999987467--267430257889999999999874254431244


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCEEEECCC-CCHHHHHHHHHHCCC----C-E
Q ss_conf             111024443564336668899987665415------------------623520789-898779999973699----6-3
Q gi|254780438|r  163 GPYGACYNNPQQERIFLNKLAITAQLAQKM------------------DLQINAGHD-LTIQNIPNLINAIPY----I-S  218 (261)
Q Consensus       163 G~Ya~a~~~~~~~~~el~~i~~aa~~A~~l------------------gL~VnAGHg-Ln~~Nl~~~i~~Ip~----I-~  218 (261)
                      -+|- .+.........++.+   .......                  +-.+--|.| ++|..+-..++.+.+    + -
T Consensus       163 D~~h-~~~~~~~~~~~~~~~---~~ri~~vHikD~~~~~~~~~~~~~~~~~~~pG~G~id~~~i~~~L~~~gy~G~~~~i  238 (275)
T d2g0wa1         163 DTWH-WARANQTAESIKNVP---ADRIVSIQLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEHGVNPRVMGV  238 (275)
T ss_dssp             EHHH-HHHTTCCGGGGTTCC---GGGEEEEEECBCCSSCCSSHHHHHHHBCBCTTSSSSCHHHHHHHHHHHTCCCSCEEE
T ss_pred             CCHH-HHHCCCCHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf             5167-786399999999843---252249999854677654211013045547789971799999999980999887999


Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             884259999999994099999999999974105
Q gi|254780438|r  219 EISVGHAFAATALECGVKEAVFCFRRACGQHLD  251 (261)
Q Consensus       219 EvsIGHaiIseAl~~GL~~aI~~~~~ii~~~~~  251 (261)
                      |+ ....+..........++...+++++.+.-.
T Consensus       239 E~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  270 (275)
T d2g0wa1         239 EV-ISDSMVATGLEYAALKVYNATKKVLDEAWP  270 (275)
T ss_dssp             CC-CBHHHHHHCHHHHHHHHHHHHHHHHHHHCG
T ss_pred             EE-CCCHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             95-680121289999999999999999998662


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]