HHSEARCH alignment of GI: 254780438 and SCOP domain: d2q02a1

Alignment
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}
Probab=92.84  E-value=0.31  Score=26.86  Aligned_cols=131  Identities=11%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCCCCCH-HHHHHHHHHHCCCCCCCEE-EEEE-CCC-----------HHHHHHHHHH
Q ss_conf             989999999974998999824788334888-9999988740001367415-8883-485-----------6899999850
Q gi|254780438|r   25 NLVHIGKIALQSGASGLTVHPRPDQRHIRY-TDLPEIRRLIDEQFPKAEL-NIEG-YPN-----------ETFLNLCERY   90 (261)
Q Consensus        25 ~~~~~a~~~~~~GadgITvH~R~DrRHI~~-~Dv~~l~~~~~~~~~~~el-NiEg-~p~-----------~e~i~ia~~i   90 (261)
                      ++-++...+.++|.+||-++......+..+ .++..+++++...  ++++ .+.. .+.           .+++++|.++
T Consensus        19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~--gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~a~~l   96 (271)
T d2q02a1          19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKY--GLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGV   96 (271)
T ss_dssp             CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHT--TCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999999998599989996376643223667799999999983--9947874124456887778899999999999982


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE--------ECCCCCCHHHHHHHHCCCC-EEEEC
Q ss_conf             72128971016555333578221333788999998620269638997--------2544441479999740661-46511
Q gi|254780438|r   91 KPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLF--------ADGNGNEHSLQAAKLTGAD-CIELY  161 (261)
Q Consensus        91 kP~qvtLVPe~r~elTTegGldv~~~~~~L~~~i~~l~~~girvSLF--------IDpd~~q~~i~~a~~~Gad-~VElh  161 (261)
                      .-..+.++|....+..   .|+.  -.+.|+.+.....+.|+++++=        ++ +++ ..++....++.+ .+-+=
T Consensus        97 G~~~v~~~~~~~~~~~---~~~~--~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~-~~~-~~~~li~~~~~~~g~~~D  169 (271)
T d2q02a1          97 GARALVLCPLNDGTIV---PPEV--TVEAIKRLSDLFARYDIQGLVEPLGFRVSSLR-SAV-WAQQLIREAGSPFKVLLD  169 (271)
T ss_dssp             TCSEEEECCCCSSBCC---CHHH--HHHHHHHHHHHHHTTTCEEEECCCCSTTCSCC-CHH-HHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEECCCCCCCC---HHHH--HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CHH-HHHHHHHHHCCCCCEECC
T ss_conf             9968999358877620---0889--99999999887352782899961677676538-899-999999972886310023


Q ss_pred             CCC
Q ss_conf             211
Q gi|254780438|r  162 TGP  164 (261)
Q Consensus       162 TG~  164 (261)
                      |+.
T Consensus       170 ~~H  172 (271)
T d2q02a1         170 TFH  172 (271)
T ss_dssp             HHH
T ss_pred             CHH
T ss_conf             066


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]