RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
(261 letters)
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel,
protein-substrate complex, multi-binding states; HET:
DXP; 1.96A {Escherichia coli} (A:)
Length = 243
Score = 266 bits (682), Expect = 2e-72
Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 9/243 (3%)
Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65
VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ +
Sbjct: 7 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL- 65
Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125
+N+E E L + KP LVP+ ++T++ G D + +
Sbjct: 66 ----DTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 121
Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185
RL + G ++SLF D +E ++AA GA IE++TG Y + +Q + L ++A
Sbjct: 122 RLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQE-LARIAKA 178
Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245
A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R
Sbjct: 179 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 237
Query: 246 CGQ 248
+
Sbjct: 238 MLE 240
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode,
ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis,
transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
(A:)
Length = 278
Score = 265 bits (679), Expect = 4e-72
Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 9/246 (3%)
Query: 3 TSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRR 62
+ VN++ VA LRN R +P+ V A +GA +T+H R D+RHI D+ +R
Sbjct: 32 IDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRP 91
Query: 63 LIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTK 122
+ K +N+E L++ +P LVP+ +LT++ G D + + +
Sbjct: 92 RV-----KTRMNLECAVTPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRA 146
Query: 123 TVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182
+L + G R+SLF D +E ++AA TGA IEL+TG Y ++ +Q+R ++
Sbjct: 147 ACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQRE-FERI 203
Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242
A + L++NAGH L N+ I A+P I+E+++GHA A A+ G AV
Sbjct: 204 ATGVDAGIALGLKVNAGHGLHYTNVQ-AIAALPGIAELNIGHAIVAHAVFVGWDNAVREM 262
Query: 243 RRACGQ 248
+
Sbjct: 263 KAIMVA 268
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
(A:143-284)
Length = 142
Score = 29.6 bits (66), Expect = 0.44
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 77 GYPNETFLNLCERYKPEQITLVPDDPHQLTSD--HGWDFLQ-NQALLTKTVARLHNLGSR 133
G L + K E I + D+ Q+ + D + + +++ + + +
Sbjct: 50 GSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGK 109
Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158
L G N +++ LTG D I
Sbjct: 110 SVLEVSGCVNIRNVRNIALTGVDYI 134
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse);
HET: XYL; 2.20A {Actinoplanes missouriensis} (A:)
Length = 393
Score = 29.6 bits (65), Expect = 0.47
Identities = 10/118 (8%), Positives = 25/118 (21%), Gaps = 9/118 (7%)
Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
++ GA I + ++ Q + + + L +
Sbjct: 36 VEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGF---KKALDETGLIVPMVTTNL 92
Query: 204 I----QNIPNLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255
+ + ++ E G K V R ++
Sbjct: 93 FTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDV 150
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode
biostructures, ssgcid, niaid, SBRI, UWPPG,
glycosyltransferase, transferase, structural genomics;
2.25A {Burkholderia pseudomallei} (A:122-286)
Length = 165
Score = 28.8 bits (64), Expect = 0.84
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 77 GYPNETFLNLCERYKPEQITLVPDDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGSR 133
G E + + + QL HG + + L + R
Sbjct: 73 GGVGEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGR 132
Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158
L G N +++A TG D I
Sbjct: 133 AVLEVSGGVNFDTVRAIAETGVDRI 157
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A
{Streptomyces olivochromogenes} (A:)
Length = 386
Score = 28.8 bits (63), Expect = 0.84
Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 9/118 (7%)
Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
++Q GA + + ++ + + + Q + +
Sbjct: 36 VETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRF---RQALDATGMTVPMATTNL 92
Query: 204 IQNIP----NLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255
+ + ++ A+E G K V R +
Sbjct: 93 FTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDV 150
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine
biosynthesis, structural genomics, NPPSFA; 1.65A
{Thermus thermophilus HB8} PDB: 2iss_A* (A:)
Length = 297
Score = 28.0 bits (61), Expect = 1.1
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 24 PNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81
IA ++GA + R + + + A ++I
Sbjct: 28 VTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKV 85
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus
thermophilus} (A:)
Length = 387
Score = 28.0 bits (61), Expect = 1.3
Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 9/118 (7%)
Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
+ + GA + L+ PQ+ + + + + L++
Sbjct: 36 VYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRF---KKALDETGLKVPMVTANL 92
Query: 204 IQNIP----NLINAIPYISEISVGHAFAA--TALECGVKEAVFCFRRACGQHLDNTMR 255
+ + P++ ++ + E G + V R +
Sbjct: 93 FSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKA 150
>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination,
DNA repair, spine, structural genomics, structural
proteomics in europe, hydrolase; 2.57A {Bacillus
anthracis} (A:)
Length = 307
Score = 27.7 bits (60), Expect = 1.5
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
+ + A GA +YTG P +E + + ++ ++ H
Sbjct: 26 LAASEEAVSYGATTFMIYTGAPQNTRRKPIEEL----NIEAGRKHMEQNGIEEIIIHAPY 81
Query: 204 IQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242
I N+ N + + GV + +
Sbjct: 82 IINVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLH 120
>3ktc_A Xylose isomerase; putative sugar isomerase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
(A:1-275)
Length = 275
Score = 27.6 bits (60), Expect = 1.7
Identities = 12/134 (8%), Positives = 28/134 (20%), Gaps = 14/134 (10%)
Query: 127 LHNLGSRISLFADGNGN---EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLA 183
N R ++ G + A ++ ++L + ++ + L
Sbjct: 17 FANYIDRYAVDGYGPALSTIDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLK 76
Query: 184 ITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAA--TALECGVKEAVFC 241
I L + N P + + E G
Sbjct: 77 AIG---------ITPEIYLQKWSRGAFTNPDPAARAAAFELXHESAGIVRELGANYVKVW 127
Query: 242 FRRACGQHLDNTMR 255
+ +
Sbjct: 128 PGQDGWDYPFQVSH 141
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645,
structural genomics, JCSG, PSI, protein structure
initiative; 2.50A {Thermotoga maritima} (A:160-272)
Length = 113
Score = 27.5 bits (61), Expect = 1.8
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 88 ERYKPEQITLVP-DDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADG 140
+ V ++ + G D + + + R+ ++ + + G
Sbjct: 29 KIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSG 88
Query: 141 NGNEHSLQAAKLTGADCI 158
E ++ D I
Sbjct: 89 GITEENVSLYDFETVDVI 106
>3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
metal-binding protein, TIM barrel; HET: PSJ; 1.60A
{Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A*
2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A*
3ito_A* (A:51-331)
Length = 281
Score = 27.3 bits (59), Expect = 2.1
Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 13/119 (10%)
Query: 127 LHNLGSRISLFADGNGNEHSL----QAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182
+ G+R + F A + + +E
Sbjct: 9 VGTGGTRFARFPGTGEPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDKADPKEL------ 62
Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241
+ L +A + T + P ++ Y S A A A+E ++
Sbjct: 63 ---KARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIG 118
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear
Zn cluster, hydrolase; 1.02A {Escherichia coli} (A:)
Length = 285
Score = 27.3 bits (59), Expect = 2.1
Identities = 13/114 (11%), Positives = 24/114 (21%), Gaps = 7/114 (6%)
Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
++ A A L+T P + +K
Sbjct: 15 ANAAIRAAEIDATAFALFTKNQRQWRAAPLTT----QTIDEFKAACEKYHYTSAQILPHD 70
Query: 204 IQNIPNLINAIPYISEISVGHAF--AATALECGVKEAVFCFRRACGQHLDNTMR 255
+ NL + + E S + G+ F Q +
Sbjct: 71 -SYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCL 123
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein,
pyridoxal phosphate, structural genomics, NPPSFA; 2.30A
{Methanocaldococcus jannaschii DSM2661} (A:)
Length = 330
Score = 26.8 bits (57), Expect = 2.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 26 LVHIGKIALQSGASGLTVHPR------PDQRHIRYTDLPEIRRLIDE 66
V +IA ++GA + R R +D I ++D
Sbjct: 26 NVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDA 72
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase;
quinolinate phosphoribosyltransferase, quinolinic acid;
HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A*
2b7q_A* (A:117-261)
Length = 145
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 99 PDDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKL 152
+ + + + G D + + + A + L A GN + S+ A
Sbjct: 73 CESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAK 132
Query: 153 TGADCI 158
+G D I
Sbjct: 133 SGVDAI 138
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase,
de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A
{Mycobacterium tuberculosis H37RV} (A:130-274)
Length = 145
Score = 26.2 bits (57), Expect = 4.8
Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 6/88 (6%)
Query: 77 GYPNETFLNLCERYKPEQITLVPDDP--HQLTSDHGWDFLQ----NQALLTKTVARLHNL 130
G + + + D + + V R +
Sbjct: 50 GSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSR 109
Query: 131 GSRISLFADGNGNEHSLQAAKLTGADCI 158
+ L + G + + TG D +
Sbjct: 110 APTVMLESSGGLSLQTAATYAETGVDYL 137
>2qwu_A Intracellular growth locus, subunit C; structure, IGLC, cell
invasion; 1.65A {Francisella tularensis subsp} (A:)
Length = 211
Score = 25.9 bits (56), Expect = 5.5
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 151 KLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
++T + I + T P AC + R F++ L I + K + I+ G D+T
Sbjct: 11 QVTSGETIHVRTDP-TACIGSHPNCRXFIDSLTIAGEKLDKNIVAIDGGEDVT 62
>1qap_A Quinolinic acid phosphoribosyltransferase;
glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A
{Salmonella typhimurium} (A:143-285)
Length = 143
Score = 25.8 bits (56), Expect = 5.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 130 LGSRISLFADGNGNEHSLQAAKLTGADCI 158
+ + L GN +L+ TG D I
Sbjct: 107 VNGQARLEVSGNVTAETLREFAETGVDFI 135
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate,
lyase; 1.9A {Thermotoga maritima} (A:)
Length = 205
Score = 26.0 bits (56), Expect = 6.0
Identities = 4/54 (7%), Positives = 15/54 (27%)
Query: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ 174
+ V + + G N ++ G + + + + ++
Sbjct: 138 PQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVRE 191
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase,
structural genomics, NPPSFA; 1.90A {Thermus thermophilus
HB8} (A:131-273)
Length = 143
Score = 25.7 bits (56), Expect = 6.5
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 77 GYPNETFLNLCERYKPEQITLVP-DDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGS 132
G E R V +L + G D + + L + +G
Sbjct: 50 GGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNFPLEALREAVRRVGG 109
Query: 133 RISLFADGNGNEHSLQAAKLTGADCI 158
R+ L A GN +AA G D +
Sbjct: 110 RVPLEASGNMTLERAKAAAEAGVDYV 135
>2f6s_A Cell filamentation protein, putative; structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 2.50A {Helicobacter pylori 26695}
(A:)
Length = 201
Score = 25.6 bits (55), Expect = 6.5
Identities = 7/64 (10%), Positives = 12/64 (18%)
Query: 89 RYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQ 148
R K + + + F +GNG +
Sbjct: 72 RDKNIAKGNFRFANCLYLDLILPRIESXPQNNFNQIVEKYVEXNIAHPFLEGNGRATRIW 131
Query: 149 AAKL 152
L
Sbjct: 132 LDLL 135
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,964,202
Number of extensions: 84997
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 27
Length of query: 261
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 174
Effective length of database: 2,015,014
Effective search space: 350612436
Effective search space used: 350612436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)