RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus str. psy62] (261 letters) >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} Length = 242 Score = 181 bits (460), Expect = 6e-47 Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 9/240 (3%) Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65 VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ +D Sbjct: 6 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLD 65 Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125 + E E L + KP LVP+ ++T++ G D + + Sbjct: 66 TRMNL-----EMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 120 Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185 RL + G ++SLF + +E ++AA GA IE++TG Y A ++ L ++A Sbjct: 121 RLADAGIQVSLFI--DADEEQIKAAAEVGAPFIEIHTGCY-ADAKTDAEQAQELARIAKA 177 Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 178 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 236 >d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 91 Score = 29.4 bits (66), Expect = 0.35 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 87 CERYKPEQITL-VPDDPHQLTSDHGWDFLQ 115 E Y+ EQ L +P DP ++D ++ Sbjct: 7 LEGYRKEQERLGIPYDPIHWSTDQVLHWVV 36 >d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]} Length = 283 Score = 27.2 bits (59), Expect = 1.6 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 11/122 (9%) Query: 50 RHIRYTDLPEIRRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDH 109 ++ ++ ++++ F + + E Y + E ++ + Sbjct: 5 TKASQENIQQLGNILEQCFVMSFGDSEIY--------VKGIGLENFRVIYREQKVAGGLA 56 Query: 110 GWDFLQNQALLTKTVARLHNLGSRISLFADGNGN---EHSLQAAKLTGADCIELYTGPYG 166 Q +A + +G DG +H+LQ LY Sbjct: 57 ILPMGQWWGGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVLYPATQR 116 Query: 167 AC 168 Sbjct: 117 LY 118 >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 Score = 26.8 bits (58), Expect = 1.9 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 87 CERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL-TKTVARLHN-LGSRISLFADGNGNE 144 + T +D + G + TK + ++N +I + A G G Sbjct: 294 IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASG-GIF 352 Query: 145 HSLQAAK--LTGADCIELYTG 163 L A + GA +LY+ Sbjct: 353 SGLDALEKIEAGASVCQLYSC 373 >d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]} Length = 297 Score = 26.6 bits (58), Expect = 2.3 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 8/46 (17%) Query: 129 NLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ 174 +GS +S + + + A GA +YTG PQ Sbjct: 2 KIGSHVS-MSGKKMLLAASEEAVSYGATTFMIYTG-------APQN 39 >d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 Score = 26.3 bits (58), Expect = 2.6 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%) Query: 88 ERYKPEQITL-VPDDPHQLTSDHGWDFLQ 115 + EQ L +P DP Q T H D++ Sbjct: 26 SGFTKEQQRLGIPKDPRQWTETHVRDWVM 54 >d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283 {Lactobacillus casei [TaxId: 1582]} Length = 121 Score = 26.0 bits (57), Expect = 3.0 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%) Query: 45 PRPDQRHIRYTDLPEIRRLIDEQFPKAELNI 75 P PD T + + + QFP+ +L Sbjct: 11 PTPDDL----TRVESLFANMQAQFPQLKLEF 37 >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 Score = 26.1 bits (56), Expect = 3.3 Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 8/105 (7%) Query: 72 ELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLG 131 E +G ++ K + + T+ G + + + V + Sbjct: 194 EGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL 253 Query: 132 SRISLFADGNGNEHSLQAAK---LTGADCIELYTGPYGACYNNPQ 173 + G S ++ +GA +++ + + Sbjct: 254 PGFPIL--ATGGIDSAESGLQFLHSGASVLQVCS---AVQNQDFT 293 >d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 348 Score = 25.8 bits (55), Expect = 3.7 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%) Query: 78 YPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQAL---LTKTVARLHNLGSRI 134 Y N F +L + LV D + + D + + + RL N S + Sbjct: 70 YENNLFYDLADENG----ILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHAS-L 124 Query: 135 SLFADGNGNEHSLQAAKLTGADCIELYTGPY 165 +++ N +L+ E+Y G Sbjct: 125 AMWCGNNEILEALKYWGFEKKFTPEVYQGLM 155 >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 Score = 25.2 bits (54), Expect = 5.0 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 5/136 (3%) Query: 101 DPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGN--EHSLQAAKLTGADCI 158 D + G + L + + + + G E + + + Sbjct: 143 DALRAAHREGVAYFLE---LEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYR 199 Query: 159 ELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYIS 218 + T Y P+ + + A + ++ + + + L A ++ Sbjct: 200 PVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILA 259 Query: 219 EISVGHAFAATALECG 234 E+ V A A A+ G Sbjct: 260 ELDVYAALAEVAVRYG 275 >d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]} Length = 179 Score = 25.2 bits (55), Expect = 6.4 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 39 SGLTVHP--RPDQRHIRYTDLPEIRRLIDEQ---FPKAELNIEGYPNETFLNLCERYKPE 93 S LT+ P T+ EI++ ++ + F + + + + T + Y+ Sbjct: 1 SALTIFSVKDPQNSLWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHA 60 >d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 281 Score = 24.9 bits (54), Expect = 7.2 Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 19/110 (17%) Query: 14 VLRNRRNLP----WPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFP 69 R P + +Q G + P R E EQ Sbjct: 148 TPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVG 207 Query: 70 KAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQAL 119 K + +E L Y+ + +P + L+ AL Sbjct: 208 KMKAIVE--------KLRFTYRSDSFE----NPVL---QQHFRNLEALAL 242 >d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]} Length = 153 Score = 24.6 bits (52), Expect = 7.8 Identities = 7/70 (10%), Positives = 16/70 (22%), Gaps = 3/70 (4%) Query: 50 RHIRYTDLPEIRRLIDE--QFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTS 107 L + L + +F E + R + + D+ +L Sbjct: 4 VQATLEHLDLLAPLFVKYREFYGMLSYPESSR-KFLEKRLRRKESVIYLALADEEDRLLG 62 Query: 108 DHGWDFLQNQ 117 + Sbjct: 63 FCQLYPSFSS 72 >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} Length = 285 Score = 24.5 bits (52), Expect = 9.3 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 16/125 (12%) Query: 130 LGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ-ERIFLNKLAITA-- 186 +G+ +S G ++ A A L+T N +Q L I Sbjct: 4 IGAHVSA---AGGLANAAIRAAEIDATAFALFTK-------NQRQWRAAPLTTQTIDEFK 53 Query: 187 QLAQKMDLQINA--GHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRR 244 +K HD + N+ + + S + + G+ F Sbjct: 54 AACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCE-QLGLSLLNFHPGS 112 Query: 245 ACGQH 249 Q Sbjct: 113 HLMQI 117 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 956,764 Number of extensions: 43078 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 20 Length of query: 261 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 177 Effective length of database: 1,254,276 Effective search space: 222006852 Effective search space used: 222006852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.5 bits)