BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (261 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score =  543 bits (1400), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MSTSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEI 60
           MSTSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEI
Sbjct: 1   MSTSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEI 60

Query: 61  RRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL 120
           RRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL
Sbjct: 61  RRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL 120

Query: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLN 180
           TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLN
Sbjct: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLN 180

Query: 181 KLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVF 240
           KLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVF
Sbjct: 181 KLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVF 240

Query: 241 CFRRACGQHLDNTMRLTHPVK 261
           CFRRACGQHLDNTMRLTHPVK
Sbjct: 241 CFRRACGQHLDNTMRLTHPVK 261


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 32.3 bits (72), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 142 GNEHS-LQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQIN 197
           G E++ LQ   ++  D IE +  P G   N P       NK++IT  LA K+D  IN
Sbjct: 438 GKEYAVLQNENISCCDAIEEHLKPRGPLENVPT------NKISITVSLADKLDTLIN 488


>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 199

 Score = 29.3 bits (64), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 27/127 (21%)

Query: 67  QFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGW--------------- 111
           QF   + NI+    E  ++  ER +PE+I L+  +   L   + +               
Sbjct: 24  QFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLG 83

Query: 112 --------DFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLT----GADCIE 159
                   D L+ +  L +   + H + S   L  +G    H +  A+LT      + I+
Sbjct: 84  SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIK 143

Query: 160 LYTGPYG 166
            Y    G
Sbjct: 144 FYLNKIG 150


>gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score = 24.3 bits (51), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 227 AATALECGVKEAVFCFRRACGQHL 250
            A  L+C V++A F  RR C   L
Sbjct: 21  GAKKLDCWVRKASFVGRRGCPDRL 44


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,195
Number of Sequences: 1233
Number of extensions: 6237
Number of successful extensions: 16
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 261
length of database: 328,796
effective HSP length: 72
effective length of query: 189
effective length of database: 240,020
effective search space: 45363780
effective search space used: 45363780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)