HHsearch alignment for GI: 254780439 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=94.13 E-value=0.45 Score=26.26 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=47.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCC-CCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513-10043379999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA-DATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~a-D~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
T Consensus 2 ~ILV~GATG~----------lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al--~GvdaVi 69 (319)
T CHL00194 2 SLLVIGATGT----------LGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPAL--EGITAII 69 (319)
T ss_pred EEEEECCCCH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHH--CCCCEEE
T ss_conf 7999899858----------999999999968890899957867632342159679994278877899996--5996799
Q ss_pred ECCC
Q ss_conf 7588
Q gi|254780439|r 88 PTTG 91 (1162)
Q Consensus 88 p~~G 91 (1162)
T Consensus 70 ~~~~ 73 (319)
T CHL00194 70 DAST 73 (319)
T ss_pred EECC
T ss_conf 9456