HHsearch alignment for GI: 254780439 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=673.68 Aligned_cols=380 Identities=33% Similarity=0.597 Sum_probs=361.0
Q ss_pred ECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 72763020147665318999999999659806996068652112324586379841678899999987485678227998
Q gi|254780439|r 624 LGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIV 703 (1162)
Q Consensus 624 lGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~ 703 (1162)
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Da----ilp 76 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDA----ILP 76 (400)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCE----EEC
T ss_conf 9987606676411143678999999866975999728872124780005302662473788999997537662----632
Q ss_pred ECCCHHHHHHHHHHHHC------CCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 44512466898888875------983861275203310286789998887098668542112156655565536971675
Q gi|254780439|r 704 QFGGQTPLKLSKILEKN------QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLI 777 (1162)
Q Consensus 704 q~gGqt~~~la~~L~~~------gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLV 777 (1162)
T Consensus 77 ~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIV 155 (400)
T COG0458 77 TLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIV 155 (400)
T ss_pred CCCCCCHHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 46874134688998772645644977994587895564209999999998399988-41235677776557636997798
Q ss_pred ECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC-C
Q ss_conf 134444565412554899999999975210132211112233333333455777745670220120100101023079-8
Q gi|254780439|r 778 RPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND-Q 856 (1162)
Q Consensus 778 RPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~-~ 856 (1162)
T Consensus 156 rP~~~lGG~G~~i~~n~eel~~~~~~~l~---------------------~s~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 156 KPSFGLGGSGGGIAYNEEELEEIIEEGLR---------------------ASPVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred ECCCCCCCCCEEEEECHHHHHHHHHHCCC---------------------CCCCCCCEEEEEECCCEEEEEEEEEECCCC
T ss_conf 06857888751687189999999873224---------------------476420012442168569999999837998
Q ss_pred EEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--CEEEEEEECCCCCCCH
Q ss_conf 49998520110215245762798168668999999999999999874133576247885128--8599985244445630
Q gi|254780439|r 857 VIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIYILEVNPRASRTV 934 (1162)
Q Consensus 857 v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd--~~iYVIEvNpRaSRtv 934 (1162)
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 79998678656566444323652145565437889988877778887411478731489869985599999568767640
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 45677739889999999985972100246666777---766687389972038834459998670775631013777419
Q gi|254780439|r 935 PFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRP---DLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQ 1011 (1162)
Q Consensus 935 PfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~---~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~ 1011 (1162)
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr 374 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGR 374 (400)
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECC
T ss_conf 31554468769999997503567065447664443444577666036634778732134556331002300102899631
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998388798
Q gi|254780439|r 1012 DFPLAFAKSQLGIGVDLP 1029 (1162)
Q Consensus 1012 ~~~eA~~Ka~~a~g~~lP 1029 (1162)
T Consensus 375 ~f~eal~ka~~~l~~~~~ 392 (400)
T COG0458 375 TFEEALQKALRSLEIGLA 392 (400)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 299999999986114665