HHsearch alignment for GI: 254780439 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.54 E-value=1.7e-12 Score=116.66 Aligned_cols=270 Identities=19% Similarity=0.219 Sum_probs=203.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHH--HHHHHHH
Q ss_conf 99999999965980699606865211232458637984167889999998748567822799844512466--8988888
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPL--KLSKILE 718 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~--~la~~L~ 718 (1162)
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-v---vfp~lhG~~gEDg~iqg~le 84 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTK--------------RVLQKAD-V---VFPVLHGPYGEDGTIQGLLE 84 (317)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHH--------------HHHCCCC-E---EEEECCCCCCCCCHHHHHHH
T ss_conf 8999998761487158873246632785031012--------------2202698-7---78715588888706999999
Q ss_pred HCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHHCCCCEEEECCCCCCCCCCEEECCH
Q ss_conf 7598386127520331028678999888709866854211215----665556553697167513444456541255489
Q gi|254780439|r 719 KNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSV----EHARLIACEIGFPLLIRPSYVLGGRAMQIVYSE 794 (1162)
Q Consensus 719 ~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~----eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~ 794 (1162)
T Consensus 85 ~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~ 164 (317)
T COG1181 85 LLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVE 164 (317)
T ss_pred HHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEE
T ss_conf 70998760764453323509999889986786512356753345204788877414688789985873113679988350
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECC---------
Q ss_conf 99999999752101322111122333333334557777456702201201001010230798499985201---------
Q gi|254780439|r 795 NMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEH--------- 865 (1162)
Q Consensus 795 ~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEH--------- 865 (1162)
T Consensus 165 ~d~~~~~e~a~~-----------------------~d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fyd 220 (317)
T COG1181 165 GDLQSALELAFK-----------------------YDRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYD 220 (317)
T ss_pred CCHHHHHHHHHH-----------------------HCCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEE
T ss_conf 436999999998-----------------------478512003776-65589863588655244476168169986986
Q ss_pred CCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--CEEEEEEECCCCC----CCHHHHHH
Q ss_conf 10215245762798168668999999999999999874133576247885128--8599985244445----63045677
Q gi|254780439|r 866 IEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIYILEVNPRAS----RTVPFIAK 939 (1162)
Q Consensus 866 iE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd--~~iYVIEvNpRaS----RtvPfvSK 939 (1162)
T Consensus 221 ye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~ 299 (317)
T COG1181 221 YEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAA 299 (317)
T ss_pred EECCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 00014578984353788-99988999999999999986088875888799987899899998708998765353767798
Q ss_pred HHCCCHHHHHHHHH
Q ss_conf 73988999999998
Q gi|254780439|r 940 AIGFPVAKVAARII 953 (1162)
Q Consensus 940 atG~pl~~iAt~v~ 953 (1162)
T Consensus 300 ~~gi~~~~L~~~~~ 313 (317)
T COG1181 300 AAGISFAILVLRFV 313 (317)
T ss_pred HCCCCHHHHHHHHH
T ss_conf 75998899999998