HHsearch alignment for GI: 254780439 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=91.87 E-value=0.79 Score=24.38 Aligned_cols=98 Identities=26% Similarity=0.414 Sum_probs=60.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
T Consensus 8 DVIViG~GhA-----------G~EAa~aaar~G~~t~lit~~~~~ig~---msC------------------------NP 49 (621)
T PRK05192 8 DVIVVGGGHA-----------GCEAALAAARMGAKTLLLTHNLDTIGQ---MSC------------------------NP 49 (621)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCEEE---EEC------------------------CC
T ss_conf 8899897579-----------999999999679967999658131158---604------------------------52
Q ss_pred CCCCCHHHHHHHHHHHCCC-----HHHHCC--EE----ECCCHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 5887026888899887596-----288287--57----14998999860588999999998789888
Q gi|254780439|r 89 TTGGQTALNTALSLKRMGV-----LDRYGV--EM----IGAKPETIDKAEDRSLFSKAMQNIPLATP 144 (1162)
Q Consensus 89 ~~GGqtalnl~~~L~e~gi-----l~~~~v--~~----lG~~~~~I~~~edR~~F~~~l~~~gip~~ 144 (1162)
T Consensus 50 siGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~ 116 (621)
T PRK05192 50 AIGGIAKGHLVREIDALGGEMGKAADKTGIQFRMLNTSKGPAVRAPRAQADRKLYRAAMREILENQP 116 (621)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0367216576668775368999999887616876158888300673988859999999999996499