HHsearch alignment for GI: 254780439 and conserved domain: TIGR00768

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.28  E-value=2e-08  Score=84.57  Aligned_cols=280  Identities=20%  Similarity=0.267  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHCCCE--EEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC-----CHHHHHHHH
Q ss_conf             889999999987978--9997487650107845131004337999999999986289889975887-----026888899
Q gi|254780439|r   29 SGTQACKALKEEGYR--IILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG-----QTALNTALS  101 (1162)
Q Consensus        29 s~~qa~~alke~Gi~--vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG-----qtalnl~~~  101 (1162)
T Consensus        19 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~I~~~~~~----~~~~~~~~~~d~~~~R~~TPWv~~~~~~~~~r~   93 (321)
T TIGR00768        19 DEKMLKEAAEERGIDYKVVTPPEIVLTFNQ-PAAFSIFYKEPR----KNKELALAELDVVIVRIGTPWVSSFRGLAVLRA   93 (321)
T ss_pred             HHHHHHHHHHHHCCCEEEECCHHHEECCCC-CCCCEEECCCCC----CCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             999999999971795367604122003688-851001114541----001023117888998389975110268899999


Q ss_pred             HHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88759628828757149989998605889999999987898886200023443333323333333444444443333222
Q gi|254780439|r  102 LKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA  181 (1162)
Q Consensus       102 L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (1162)
T Consensus        94 l------E~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~Pqnf----------DRe--------------  142 (321)
T TIGR00768        94 L------ESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNF----------DRE--------------  142 (321)
T ss_pred             H------HHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCC----------CCC--------------
T ss_conf             9------85896310-7069986214658999999958689873357366322----------435--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HHHCCCCC
Q ss_conf             11111123344444445544489999999998719---96999413267866451116999999999989--98579982
Q gi|254780439|r  182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIG---LPLIIRPSFTLGGTGGGIAYNRSEFLEIVENG--LHASPTTE  256 (1162)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG---yPvivRps~~lGG~G~~iv~n~eeL~~~~~~a--l~~s~~~~  256 (1162)
T Consensus       143 ---------------------W~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~~~~~~  201 (321)
T TIGR00768       143 ---------------------WSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQYKV  201 (321)
T ss_pred             ---------------------CCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCE
T ss_conf             ---------------------89889999998731764245871785635426898506789999999997218833235


Q ss_pred             EEEEEECC--CCEE--EEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             79866449--9789--9999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r  257 VLIEESVL--GWKE--YELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES  332 (1162)
Q Consensus       257 vlIeksl~--g~kE--iE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v  332 (1162)
T Consensus       202 ~~~QeyI~Pv~~~grDIR~fVvGd~v~aA~~R~~~~~~w~~N~a~GG~a~--~~-~l~~e~----~~LA~ka~~a~g~--  272 (321)
T TIGR00768       202 FLVQEYIKPVKPGGRDIRVFVVGDEVVAAIYRIITSGHWRTNLARGGKAE--PC-SLTEEI----EELAIKAAKALGL--  272 (321)
T ss_pred             EEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCC--CC-CCCHHH----HHHHHHHHHHHCC--
T ss_conf             78872011325789318999988920133354178830243554388212--45-258899----9999999999768--


Q ss_pred             CCCEEEEEEECC-C--CEEEEEEECCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf             764689999558-9--8499985044431035788876346147677
Q gi|254780439|r  333 GGANVQFAVNPK-N--GKMVVIEMNPRVSRSSALASKATGFPIAKIA  376 (1162)
Q Consensus       333 G~~nVQFAv~p~-~--~~~yvIEvNpR~sRssalaskatgypia~va  376 (1162)
T Consensus       273 ~v~giDlle~~~r~dw~GL~V~EVN~~~~--f~~~~~~tgvniA~~l  317 (321)
T TIGR00768       273 DVAGIDLLESKDRDDWGGLLVLEVNANPE--FKNSVKTTGVNIAGKL  317 (321)
T ss_pred             CEEEEEEEECCCCCCCCCCEEEEECCCCC--CCCCEEECCCCHHHHH
T ss_conf             34899776626854257837999849977--0011111167768999