HHsearch alignment for GI: 254780439 and conserved domain: TIGR00768
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.28 E-value=2e-08 Score=84.57 Aligned_cols=280 Identities=20% Similarity=0.267 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHCCCE--EEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC-----CHHHHHHHH
Q ss_conf 889999999987978--9997487650107845131004337999999999986289889975887-----026888899
Q gi|254780439|r 29 SGTQACKALKEEGYR--IILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG-----QTALNTALS 101 (1162)
Q Consensus 29 s~~qa~~alke~Gi~--vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG-----qtalnl~~~ 101 (1162)
T Consensus 19 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~I~~~~~~----~~~~~~~~~~d~~~~R~~TPWv~~~~~~~~~r~ 93 (321)
T TIGR00768 19 DEKMLKEAAEERGIDYKVVTPPEIVLTFNQ-PAAFSIFYKEPR----KNKELALAELDVVIVRIGTPWVSSFRGLAVLRA 93 (321)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHEECCCC-CCCCEEECCCCC----CCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 999999999971795367604122003688-851001114541----001023117888998389975110268899999
Q ss_pred HHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88759628828757149989998605889999999987898886200023443333323333333444444443333222
Q gi|254780439|r 102 LKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181 (1162)
Q Consensus 102 L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1162)
T Consensus 94 l------E~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~Pqnf----------DRe-------------- 142 (321)
T TIGR00768 94 L------ESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNF----------DRE-------------- 142 (321)
T ss_pred H------HHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCC----------CCC--------------
T ss_conf 9------85896310-7069986214658999999958689873357366322----------435--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HHHCCCCC
Q ss_conf 11111123344444445544489999999998719---96999413267866451116999999999989--98579982
Q gi|254780439|r 182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIG---LPLIIRPSFTLGGTGGGIAYNRSEFLEIVENG--LHASPTTE 256 (1162)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG---yPvivRps~~lGG~G~~iv~n~eeL~~~~~~a--l~~s~~~~ 256 (1162)
T Consensus 143 ---------------------W~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~~~~~~ 201 (321)
T TIGR00768 143 ---------------------WSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQYKV 201 (321)
T ss_pred ---------------------CCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCE
T ss_conf ---------------------89889999998731764245871785635426898506789999999997218833235
Q ss_pred EEEEEECC--CCEE--EEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79866449--9789--9999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r 257 VLIEESVL--GWKE--YELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES 332 (1162)
Q Consensus 257 vlIeksl~--g~kE--iE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v 332 (1162)
T Consensus 202 ~~~QeyI~Pv~~~grDIR~fVvGd~v~aA~~R~~~~~~w~~N~a~GG~a~--~~-~l~~e~----~~LA~ka~~a~g~-- 272 (321)
T TIGR00768 202 FLVQEYIKPVKPGGRDIRVFVVGDEVVAAIYRIITSGHWRTNLARGGKAE--PC-SLTEEI----EELAIKAAKALGL-- 272 (321)
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCC--CC-CCCHHH----HHHHHHHHHHHCC--
T ss_conf 78872011325789318999988920133354178830243554388212--45-258899----9999999999768--
Q ss_pred CCCEEEEEEECC-C--CEEEEEEECCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 764689999558-9--8499985044431035788876346147677
Q gi|254780439|r 333 GGANVQFAVNPK-N--GKMVVIEMNPRVSRSSALASKATGFPIAKIA 376 (1162)
Q Consensus 333 G~~nVQFAv~p~-~--~~~yvIEvNpR~sRssalaskatgypia~va 376 (1162)
T Consensus 273 ~v~giDlle~~~r~dw~GL~V~EVN~~~~--f~~~~~~tgvniA~~l 317 (321)
T TIGR00768 273 DVAGIDLLESKDRDDWGGLLVLEVNANPE--FKNSVKTTGVNIAGKL 317 (321)
T ss_pred CEEEEEEEECCCCCCCCCCEEEEECCCCC--CCCCEEECCCCHHHHH
T ss_conf 34899776626854257837999849977--0011111167768999