HHsearch alignment for GI: 254780439 and conserved domain: TIGR01016

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=97.48  E-value=0.0014  Score=46.04  Aligned_cols=340  Identities=18%  Similarity=0.222  Sum_probs=192.8

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCC----CCEEECCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             899988870986685421121566555655369-71675134444565----4125548999999999752101322111
Q gi|254780439|r  740 RFQKLLMELDLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGR----AMQIVYSENMLQDYLLDTLPGLVSEEIK  814 (1162)
Q Consensus       740 ~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~----~M~Iv~~~~eL~~yl~~a~~~~~~~~~~  814 (1162)
T Consensus         7 qAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg----~~l~   82 (389)
T TIGR01016         7 QAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLG----KELK   82 (389)
T ss_pred             HHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHC----CEEE
T ss_conf             589999847896788600416789999999707997899987732671121576897087999999998708----9157


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEE-----CCCCHHCCCCCCEEEEECCCCCCHHH
Q ss_conf             1223333333345577774567022012010010102307984999852-----01102152457627981686689999
Q gi|254780439|r  815 RQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGII-----EHIEEAGIHSGDSACSLPSRSLSQQL  889 (1162)
Q Consensus       815 ~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gim-----EHiE~aGVHSGDS~~v~PpqsLs~~~  889 (1162)
T Consensus        83 t~Q----t~--~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~  156 (389)
T TIGR01016        83 TFQ----TD--PLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLL  156 (389)
T ss_pred             EEE----CC--CCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             864----07--888634478732677412001477999804787179970677841789952195716888717777778


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEE---------ECCCEEEEEEECCCCCCCHHHHHHHHCC-CHHHHHHHHHCCC---
Q ss_conf             99999999999874133576247885---------1288599985244445630456777398-8999999998597---
Q gi|254780439|r  890 KDELISQTKALAGALNVIGLINVQYA---------IKDGKIYILEVNPRASRTVPFIAKAIGF-PVAKVAARIIAGE---  956 (1162)
Q Consensus       890 ~~~i~~~t~~ia~~L~v~G~~NIQfa---------~kd~~iYVIEvNpRaSRtvPfvSKatG~-pl~~iAt~v~lG~---  956 (1162)
T Consensus       157 pYq~R----~~a~~~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLV---------iT~~G~L~alDAKl~~DDnAL  223 (389)
T TIGR01016       157 PYQAR----ELAKKLGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLV---------ITKDGNLVALDAKLTIDDNAL  223 (389)
T ss_pred             CHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEE---------ECCCCCEEEEEEECCCCCCHH
T ss_conf             78999----99997089705778899999999998875371025452636---------878988899833224465510


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHH-HCCCCCCCC
Q ss_conf             ----210024666677776668738997203883445999867077563101377741999999999999-838879887
Q gi|254780439|r  957 ----SLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQL-GIGVDLPHE 1031 (1162)
Q Consensus       957 ----~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~-a~g~~lP~~ 1031 (1162)
T Consensus       224 FRH~~l~~~~D~~~~----~~~e~~A-~~~gL~Yv~L-------------dGnIGc~vNGAGLAMaTMDIiKl~GG~P--  283 (389)
T TIGR01016       224 FRHPDLEEMEDYTQE----DQLEVEA-KQLGLNYVKL-------------DGNIGCMVNGAGLAMATMDIIKLYGGKP--  283 (389)
T ss_pred             CCCCCHHHHCCCCCC----CHHHHHH-HHHCCCEEEE-------------CCCEEEECCCHHHHHHHHHHHHHHCCCC--
T ss_conf             067116876388877----7337999-8618836885-------------4770797043567899999999718895--


Q ss_pred             CEEEEEE-CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCC--C-----CCHHHHHHCCC--EEE
Q ss_conf             2599996-441289999999999988989999388899999879815697505687--8-----10788986798--549
Q gi|254780439|r 1032 GTVFVSV-RDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEG--R-----PHIEDAISNRQ--VHL 1101 (1162)
Q Consensus      1032 g~vfisv-~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~--~-----~~i~d~i~~~~--i~l 1101 (1162)
T Consensus       284 -ANFLDvGGGA~~e~v~eA~~~----------------vLsD~~VKvvfiNI-FGGI~RCD~vA~G~v~A~~~~~~~VP~  345 (389)
T TIGR01016       284 -ANFLDVGGGASEERVKEALKL----------------VLSDKSVKVVFINI-FGGITRCDEVAKGLVEALKDVGVNVPV  345 (389)
T ss_pred             -CEECCCCCCCCHHHHHHHHHH----------------HHCCCCCEEEEEEE-CCCEECHHHHHHHHHHHHHCCCCCCCE
T ss_conf             -302245878898999999898----------------73599820899970-686001878878899998318853687


Q ss_pred             EEECCCCCCCCCCHHHHHHHHH--HCCCCEEECHH-HHHHHHHH
Q ss_conf             9967899852311089999999--70997994599-99999999
Q gi|254780439|r 1102 VINTTEGKKAIEDSKSLRRATL--IRKIPYYTTIA-GADAVFQA 1142 (1162)
Q Consensus      1102 VINt~~~~~~~~dg~~iRr~Ai--~~~ip~~T~~~-~a~a~~~a 1142 (1162)
T Consensus       346 VvRL~G-TN-~E~G~~iL~e~gkdr~ni~~~~sm~~aA~kaV~~  387 (389)
T TIGR01016       346 VVRLEG-TN-VEEGKKILQESGKDRLNIIFATSMEEAAEKAVEL  387 (389)
T ss_pred             EEECCC-CC-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             898157-88-7888899997276778863226878899999998