HHsearch alignment for GI: 254780439 and conserved domain: TIGR02144
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=98.95 E-value=2.1e-07 Score=76.37 Aligned_cols=255 Identities=18% Similarity=0.199 Sum_probs=171.7
Q ss_pred HHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 999996598--069960686521123245863798416788999999874856782279984451246689888887598
Q gi|254780439|r 645 SFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQI 722 (1162)
Q Consensus 645 ~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv 722 (1162)
T Consensus 16 ~e~l~~lg~~v~~i~~------------~~~~~~~~d~~i~------~~~~---~dv~i~R~VS~~R~L~~a~~~E~~G~ 74 (289)
T TIGR02144 16 LEELEKLGLQVRVIYV------------PELALPFGDLGIK------ELED---LDVAIIRNVSQSRALYSAFLLEAVGV 74 (289)
T ss_pred HHHHHHHCCCCEEEEC------------CCEEECCCCCCCC------HHCC---CCEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 9999872897326620------------3402207885630------0037---55689830345679999999984897
Q ss_pred EEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHH
Q ss_conf 38612752033102867899988870986685421121566555655369716751344445654125548999999999
Q gi|254780439|r 723 PILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLL 802 (1162)
Q Consensus 723 ~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~ 802 (1162)
T Consensus 75 ~~iN~~-~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~~~~~llE 153 (289)
T TIGR02144 75 PTINSS-HAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKDELESLLE 153 (289)
T ss_pred EEECCH-HHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf 152775-8987504618899999966788983589828689999999708988970888843788764037889889999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCC----CCCEEE
Q ss_conf 7521013221111223333333345577774567022012010010102307984999852011021524----576279
Q gi|254780439|r 803 DTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIH----SGDSAC 878 (1162)
Q Consensus 803 ~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVH----SGDS~~ 878 (1162)
T Consensus 154 h~-e~~------------------~~~~~~~~y~QEfi~-KPgRDIR~fViGd~-~~~AIYR~~~P~~W~TNtArGG~-- 210 (289)
T TIGR02144 154 HK-EVL------------------GGSQLKLYYVQEFIN-KPGRDIRVFVIGDE-AIAAIYRYSEPNHWRTNTARGGK-- 210 (289)
T ss_pred HH-HHH------------------CCCCCCEEEEEEEEC-CCCCEEEEEEECCC-CEEEEEECCCCCCHHHHHHCCCC--
T ss_conf 99-986------------------797633379998871-88960899999797-31678833885302556305884--
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCC-----EEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 81686689999999999999998741335762478851-288-----599985244445630456777398899999999
Q gi|254780439|r 879 SLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDG-----KIYILEVNPRASRTVPFIAKAIGFPVAKVAARI 952 (1162)
Q Consensus 879 v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~-----~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v 952 (1162)
T Consensus 211 -A~P~~~~----~e~~~La~kA~~avgg~-~~~iDi~Es~~rqndW~GlLV~EVN~~--~EFKN~~rvTGvNva~~l~~y 282 (289)
T TIGR02144 211 -AEPCKID----EEVEELAVKAAEAVGGE-VVGIDIVESKRRQNDWGGLLVNEVNGV--PEFKNTVRVTGVNVAEKLVEY 282 (289)
T ss_pred -CCCCCCC----HHHHHHHHHHHHHHCCE-EEEEEEEECCCCCCCCCCEEEEEECCC--CCCCCCEEECCCCHHHHHHHH
T ss_conf -4788768----76899999999997882-789988643344544378689735689--772785777474537899999