HHsearch alignment for GI: 254780439 and conserved domain: TIGR02144

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=98.95  E-value=2.1e-07  Score=76.37  Aligned_cols=255  Identities=18%  Similarity=0.199  Sum_probs=171.7

Q ss_pred             HHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf             999996598--069960686521123245863798416788999999874856782279984451246689888887598
Q gi|254780439|r  645 SFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQI  722 (1162)
Q Consensus       645 ~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv  722 (1162)
T Consensus        16 ~e~l~~lg~~v~~i~~------------~~~~~~~~d~~i~------~~~~---~dv~i~R~VS~~R~L~~a~~~E~~G~   74 (289)
T TIGR02144        16 LEELEKLGLQVRVIYV------------PELALPFGDLGIK------ELED---LDVAIIRNVSQSRALYSAFLLEAVGV   74 (289)
T ss_pred             HHHHHHHCCCCEEEEC------------CCEEECCCCCCCC------HHCC---CCEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf             9999872897326620------------3402207885630------0037---55689830345679999999984897


Q ss_pred             EEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHH
Q ss_conf             38612752033102867899988870986685421121566555655369716751344445654125548999999999
Q gi|254780439|r  723 PILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLL  802 (1162)
Q Consensus       723 ~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~  802 (1162)
T Consensus        75 ~~iN~~-~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~~~~~llE  153 (289)
T TIGR02144        75 PTINSS-HAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKDELESLLE  153 (289)
T ss_pred             EEECCH-HHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf             152775-8987504618899999966788983589828689999999708988970888843788764037889889999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCC----CCCEEE
Q ss_conf             7521013221111223333333345577774567022012010010102307984999852011021524----576279
Q gi|254780439|r  803 DTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIH----SGDSAC  878 (1162)
Q Consensus       803 ~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVH----SGDS~~  878 (1162)
T Consensus       154 h~-e~~------------------~~~~~~~~y~QEfi~-KPgRDIR~fViGd~-~~~AIYR~~~P~~W~TNtArGG~--  210 (289)
T TIGR02144       154 HK-EVL------------------GGSQLKLYYVQEFIN-KPGRDIRVFVIGDE-AIAAIYRYSEPNHWRTNTARGGK--  210 (289)
T ss_pred             HH-HHH------------------CCCCCCEEEEEEEEC-CCCCEEEEEEECCC-CEEEEEECCCCCCHHHHHHCCCC--
T ss_conf             99-986------------------797633379998871-88960899999797-31678833885302556305884--


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCC-----EEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             81686689999999999999998741335762478851-288-----599985244445630456777398899999999
Q gi|254780439|r  879 SLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDG-----KIYILEVNPRASRTVPFIAKAIGFPVAKVAARI  952 (1162)
Q Consensus       879 v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~-----~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v  952 (1162)
T Consensus       211 -A~P~~~~----~e~~~La~kA~~avgg~-~~~iDi~Es~~rqndW~GlLV~EVN~~--~EFKN~~rvTGvNva~~l~~y  282 (289)
T TIGR02144       211 -AEPCKID----EEVEELAVKAAEAVGGE-VVGIDIVESKRRQNDWGGLLVNEVNGV--PEFKNTVRVTGVNVAEKLVEY  282 (289)
T ss_pred             -CCCCCCC----HHHHHHHHHHHHHHCCE-EEEEEEEECCCCCCCCCCEEEEEECCC--CCCCCCEEECCCCHHHHHHHH
T ss_conf             -4788768----76899999999997882-789988643344544378689735689--772785777474537899999