HHsearch alignment for GI: 254780439 and conserved domain: cd01424
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=99.96 E-value=9.3e-29 Score=245.50 Aligned_cols=110 Identities=51% Similarity=0.804 Sum_probs=108.0
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 25999964412899999999999889899993888999998798156975056878107889867985499967899852
Q gi|254780439|r 1032 GTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKA 1111 (1162)
Q Consensus 1032 g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~ 1111 (1162)
T Consensus 1 G~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~~~~~~ 80 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA 80 (110)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCC
T ss_conf 96999986654768999999999889999987169999986498640330056799768999977935899977889865
Q ss_pred CCCHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 311089999999709979945999999999
Q gi|254780439|r 1112 IEDSKSLRRATLIRKIPYYTTIAGADAVFQ 1141 (1162)
Q Consensus 1112 ~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~ 1141 (1162)
T Consensus 81 ~~dg~~IRr~Av~~~Ip~~Tsi~~A~a~ve 110 (110)
T cd01424 81 IRDGFSIRRAALEYKVPYFTTLDTARAAVE 110 (110)
T ss_pred CCCHHHHHHHHHHCCCCEEECHHHHHHHHC
T ss_conf 742999999999769999966999998739