Query gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1162
No_of_seqs 246 out of 2383
Neff 5.1
Searched_HMMs 39220
Date Sun May 29 20:00:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780439.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01369 CPSaseII_lrg carbamo 100.0 0 0 3698.4 95.7 1052 2-1143 1-1089(1089)
2 PRK12815 carB carbamoyl phosph 100.0 0 0 3218.1 118.2 1066 1-1161 1-1066(1068)
3 PRK05294 carB carbamoyl phosph 100.0 0 0 3202.0 114.4 1061 1-1160 1-1063(1063)
4 KOG0370 consensus 100.0 0 0 2514.4 61.3 1032 4-1145 374-1407(1435)
5 TIGR01369 CPSaseII_lrg carbamo 100.0 0 0 1063.7 35.1 491 616-1144 4-529 (1089)
6 COG0458 CarB Carbamoylphosphat 100.0 0 0 1022.1 34.8 393 13-461 1-393 (400)
7 PRK05294 carB carbamoyl phosph 100.0 0 0 1013.2 38.2 389 616-1029 5-406 (1063)
8 PRK12815 carB carbamoyl phosph 100.0 0 0 1004.8 36.9 388 616-1028 5-404 (1068)
9 COG0458 CarB Carbamoylphosphat 100.0 0 0 673.7 34.6 380 624-1029 1-392 (400)
10 KOG0370 consensus 100.0 0 0 678.9 26.4 384 617-1027 376-771 (1435)
11 PRK08654 pyruvate carboxylase 100.0 0 0 593.6 38.4 458 7-575 2-494 (497)
12 PRK08462 biotin carboxylase; V 100.0 0 0 545.0 37.3 399 4-487 1-431 (446)
13 PRK12833 acetyl-CoA carboxylas 100.0 0 0 482.6 34.9 394 5-487 3-433 (458)
14 TIGR01235 pyruv_carbox pyruvat 100.0 0 0 492.0 25.9 826 9-1125 1-958 (1169)
15 PRK05586 biotin carboxylase; V 100.0 0 0 474.0 37.2 392 7-487 2-430 (447)
16 PRK08591 acetyl-CoA carboxylas 100.0 0 0 467.3 37.4 391 7-487 2-428 (449)
17 PRK07178 acetyl-CoA carboxylas 100.0 0 0 463.5 37.4 391 7-487 2-428 (471)
18 PRK06111 acetyl-CoA carboxylas 100.0 0 0 466.5 35.0 391 7-487 2-429 (449)
19 PRK12999 pyruvate carboxylase; 100.0 0 0 457.2 36.0 374 5-457 3-420 (1147)
20 TIGR00514 accC acetyl-CoA carb 100.0 0 0 471.8 26.2 373 7-456 2-410 (451)
21 PRK08654 pyruvate carboxylase 100.0 0 0 458.3 30.2 423 619-1097 3-453 (497)
22 PRK08463 acetyl-CoA carboxylas 100.0 0 0 445.5 36.0 417 7-531 2-455 (478)
23 COG1038 PycA Pyruvate carboxyl 100.0 0 0 439.6 31.1 667 4-789 4-779 (1149)
24 PRK08462 biotin carboxylase; V 100.0 0 0 426.3 31.3 337 617-991 3-354 (446)
25 COG4770 Acetyl/propionyl-CoA c 100.0 0 0 423.8 28.2 312 7-393 2-329 (645)
26 TIGR02712 urea_carbox urea car 100.0 0 0 424.8 25.4 375 8-458 2-417 (1226)
27 KOG0238 consensus 100.0 0 0 400.7 26.3 302 10-386 1-318 (670)
28 PRK12833 acetyl-CoA carboxylas 100.0 0 0 385.8 30.2 404 615-1070 2-425 (458)
29 KOG0369 consensus 100.0 0 0 383.3 28.6 369 7-456 33-444 (1176)
30 COG0439 AccC Biotin carboxylas 100.0 7E-45 0 373.3 33.1 374 7-457 2-409 (449)
31 PRK07178 acetyl-CoA carboxylas 100.0 5.6E-45 0 374.2 31.4 402 619-1071 3-421 (471)
32 PRK08591 acetyl-CoA carboxylas 100.0 1.1E-44 0 371.7 32.3 400 619-1071 3-421 (449)
33 PRK05586 biotin carboxylase; V 100.0 1.8E-44 0 369.8 32.5 401 619-1071 3-423 (447)
34 PRK06111 acetyl-CoA carboxylas 100.0 5.6E-45 0 374.1 25.6 400 619-1071 3-422 (449)
35 TIGR00514 accC acetyl-CoA carb 100.0 4.5E-44 0 366.8 24.9 362 641-1055 14-411 (451)
36 TIGR02712 urea_carbox urea car 100.0 1.5E-43 0 362.7 24.2 328 641-996 13-365 (1226)
37 PRK08463 acetyl-CoA carboxylas 100.0 1.8E-42 0 354.1 28.2 402 619-1072 3-424 (478)
38 TIGR01235 pyruv_carbox pyruvat 100.0 1.2E-42 0 355.6 22.0 301 643-980 13-347 (1169)
39 pfam02786 CPSase_L_D2 Carbamoy 100.0 7.6E-42 0 349.1 24.3 207 128-388 1-211 (211)
40 PRK12999 pyruvate carboxylase; 100.0 8.2E-40 2.1E-44 333.0 30.0 371 618-1024 5-418 (1147)
41 PRK12767 carbamoyl phosphate s 100.0 3.7E-37 9.3E-42 312.0 33.3 292 8-388 2-300 (325)
42 COG4770 Acetyl/propionyl-CoA c 100.0 5.5E-38 1.4E-42 318.5 26.1 402 619-1072 3-424 (645)
43 COG0439 AccC Biotin carboxylas 100.0 3.4E-36 8.8E-41 304.3 32.0 390 619-1056 3-410 (449)
44 pfam02787 CPSase_L_D3 Carbamoy 100.0 1.2E-39 3.1E-44 331.7 13.3 122 479-601 1-122 (122)
45 PRK12767 carbamoyl phosphate s 100.0 1.1E-35 2.7E-40 300.4 30.6 286 619-958 2-296 (325)
46 COG1038 PycA Pyruvate carboxyl 100.0 8E-36 2.1E-40 301.4 29.3 370 619-1024 8-420 (1149)
47 pfam02786 CPSase_L_D2 Carbamoy 100.0 5.7E-37 1.5E-41 310.5 22.3 206 737-961 1-211 (211)
48 KOG0238 consensus 100.0 1.5E-36 3.8E-41 307.3 23.9 327 641-991 10-349 (670)
49 KOG0368 consensus 100.0 1.5E-34 3.9E-39 291.3 22.2 395 5-455 52-512 (2196)
50 PRK09288 purT phosphoribosylgl 100.0 4.2E-31 1.1E-35 264.0 33.1 277 2-360 7-288 (395)
51 PRK09288 purT phosphoribosylgl 100.0 5.1E-31 1.3E-35 263.4 33.3 363 616-1025 10-388 (395)
52 KOG0369 consensus 100.0 1.4E-32 3.6E-37 275.8 23.8 377 618-1038 33-425 (1176)
53 cd01424 MGS_CPS_II Methylglyox 100.0 9.3E-29 2.4E-33 245.5 13.6 110 1032-1141 1-110 (110)
54 pfam02222 ATP-grasp ATP-grasp 99.9 6E-26 1.5E-30 223.3 17.9 150 203-362 15-165 (171)
55 cd01423 MGS_CPS_I_III Methylgl 99.9 1.8E-26 4.7E-31 227.3 14.0 109 1033-1141 2-116 (116)
56 cd00532 MGS-like MGS-like doma 99.9 2.6E-26 6.6E-31 226.1 13.9 106 1034-1139 2-112 (112)
57 PRK01372 ddl D-alanine--D-alan 99.9 3.7E-23 9.5E-28 201.1 29.3 284 7-379 4-296 (304)
58 pfam02222 ATP-grasp ATP-grasp 99.9 5.2E-24 1.3E-28 207.9 17.0 162 745-935 1-165 (171)
59 PRK06019 phosphoribosylaminoim 99.9 1.1E-20 2.8E-25 181.6 30.9 358 7-456 7-369 (377)
60 PRK02186 argininosuccinate lya 99.9 3.8E-20 9.7E-25 177.3 32.4 360 30-457 16-395 (892)
61 pfam07478 Dala_Dala_lig_C D-al 99.9 2.4E-22 6.1E-27 194.7 20.2 188 135-379 1-199 (201)
62 pfam01071 GARS_A Phosphoribosy 99.9 1.3E-22 3.3E-27 196.9 18.3 178 736-931 1-189 (193)
63 PRK07206 hypothetical protein; 99.9 1E-19 2.6E-24 173.9 30.6 296 8-382 3-315 (415)
64 PRK06019 phosphoribosylaminoim 99.9 2.1E-19 5.4E-24 171.4 31.6 351 616-1024 5-368 (377)
65 PRK01966 ddl D-alanyl-alanine 99.9 9.3E-20 2.4E-24 174.2 27.8 306 8-379 4-338 (344)
66 pfam01071 GARS_A Phosphoribosy 99.9 3.5E-21 8.9E-26 185.5 20.4 175 127-358 1-189 (193)
67 KOG0368 consensus 99.9 2.2E-21 5.7E-26 187.1 18.8 306 619-962 55-409 (2196)
68 PRK01372 ddl D-alanine--D-alan 99.9 1.3E-19 3.2E-24 173.2 25.9 279 616-953 2-297 (304)
69 pfam07478 Dala_Dala_lig_C D-al 99.9 1.1E-20 2.9E-25 181.5 18.7 185 744-953 1-200 (201)
70 PRK02186 argininosuccinate lya 99.9 8.4E-19 2.1E-23 166.7 25.9 282 641-958 16-307 (892)
71 COG0027 PurT Formate-dependent 99.9 6.1E-18 1.6E-22 159.9 26.4 357 2-456 7-388 (394)
72 TIGR01205 D_ala_D_alaTIGR D-al 99.8 5.1E-18 1.3E-22 160.5 24.9 300 21-379 8-370 (375)
73 PRK07206 hypothetical protein; 99.8 4.4E-17 1.1E-21 153.1 27.3 291 639-956 12-316 (415)
74 PRK00885 phosphoribosylamine-- 99.8 7.5E-16 1.9E-20 143.3 31.9 271 9-358 2-289 (424)
75 PRK01966 ddl D-alanyl-alanine 99.8 4.8E-17 1.2E-21 152.7 25.0 305 618-953 3-339 (344)
76 PRK06849 hypothetical protein; 99.8 1.5E-16 3.8E-21 148.8 25.8 276 6-367 3-286 (387)
77 PRK13789 phosphoribosylamine-- 99.8 2.6E-15 6.5E-20 139.1 32.1 277 9-359 6-297 (426)
78 pfam08443 RimK RimK-like ATP-g 99.8 1.2E-17 3E-22 157.6 18.5 178 735-949 1-186 (190)
79 pfam02655 ATP-grasp_3 ATP-gras 99.8 3.5E-18 9E-23 161.7 15.4 130 215-360 30-160 (160)
80 pfam02655 ATP-grasp_3 ATP-gras 99.8 4.6E-18 1.2E-22 160.8 15.2 158 735-933 1-160 (160)
81 pfam02142 MGS MGS-like domain. 99.8 4E-19 1E-23 169.2 9.5 87 1045-1131 1-92 (92)
82 pfam08443 RimK RimK-like ATP-g 99.8 4.5E-17 1.2E-21 153.0 19.9 184 126-377 1-187 (190)
83 PRK13789 phosphoribosylamine-- 99.8 3.9E-15 9.9E-20 137.7 27.4 303 618-960 4-325 (426)
84 COG0027 PurT Formate-dependent 99.8 6.1E-15 1.5E-19 136.1 28.2 363 618-1025 12-388 (394)
85 PRK13790 phosphoribosylamine-- 99.8 8.7E-15 2.2E-19 134.9 28.8 272 9-359 2-288 (415)
86 COG0151 PurD Phosphoribosylami 99.8 6.8E-15 1.7E-19 135.7 28.2 271 653-955 26-315 (428)
87 smart00851 MGS MGS-like domain 99.8 8.4E-19 2.1E-23 166.7 7.6 87 1045-1131 1-90 (90)
88 PRK00885 phosphoribosylamine-- 99.8 8.6E-15 2.2E-19 134.9 27.7 300 620-961 2-319 (424)
89 PRK06849 hypothetical protein; 99.8 3.2E-15 8.1E-20 138.3 24.9 283 617-956 3-296 (387)
90 PRK06395 phosphoribosylamine-- 99.8 2E-14 5.1E-19 132.0 28.8 270 9-360 4-296 (435)
91 PRK13790 phosphoribosylamine-- 99.8 1E-14 2.5E-19 134.4 26.6 297 620-958 2-315 (415)
92 TIGR01205 D_ala_D_alaTIGR D-al 99.7 1E-14 2.6E-19 134.3 25.0 295 632-954 8-372 (375)
93 COG0151 PurD Phosphoribosylami 99.7 7E-14 1.8E-18 127.7 28.3 363 9-457 2-406 (428)
94 PRK10446 ribosomal protein S6 99.7 7.2E-14 1.8E-18 127.6 28.0 276 9-377 2-283 (300)
95 PRK06395 phosphoribosylamine-- 99.7 8.7E-14 2.2E-18 126.9 24.3 294 619-956 3-320 (435)
96 PRK05784 phosphoribosylamine-- 99.7 8.9E-13 2.3E-17 118.9 29.4 275 9-359 2-311 (485)
97 COG0026 PurK Phosphoribosylami 99.7 3.5E-13 8.9E-18 122.2 27.1 352 8-453 2-363 (375)
98 pfam00289 CPSase_L_chain Carba 99.7 5.6E-17 1.4E-21 152.2 6.5 97 7-123 1-109 (109)
99 COG0026 PurK Phosphoribosylami 99.6 5.6E-12 1.4E-16 112.7 28.8 322 619-994 2-330 (375)
100 COG1181 DdlA D-alanine-D-alani 99.6 1E-13 2.7E-18 126.3 19.9 282 22-378 12-311 (317)
101 PRK10446 ribosomal protein S6 99.6 3.4E-13 8.8E-18 122.2 20.7 276 620-953 2-286 (300)
102 PRK05784 phosphoribosylamine-- 99.6 6.8E-12 1.7E-16 112.0 27.4 367 620-1025 2-426 (485)
103 COG2232 Predicted ATP-dependen 99.6 1.5E-13 3.7E-18 125.2 16.7 289 618-989 11-322 (389)
104 TIGR00877 purD phosphoribosyla 99.6 1E-11 2.6E-16 110.6 23.0 302 620-959 2-340 (459)
105 TIGR00877 purD phosphoribosyla 99.5 9.4E-11 2.4E-15 102.9 26.8 363 9-457 2-441 (459)
106 COG2232 Predicted ATP-dependen 99.5 5.1E-12 1.3E-16 113.0 19.8 285 1-388 1-305 (389)
107 COG1181 DdlA D-alanine-D-alani 99.5 1.7E-12 4.4E-17 116.7 17.4 270 641-953 23-313 (317)
108 TIGR01161 purK phosphoribosyla 99.5 3.7E-11 9.5E-16 106.1 22.2 263 9-361 1-289 (386)
109 pfam00289 CPSase_L_chain Carba 99.5 5.6E-14 1.4E-18 128.5 6.4 96 619-732 2-109 (109)
110 TIGR01142 purT phosphoribosylg 99.3 5.4E-10 1.4E-14 96.9 17.8 299 9-386 1-314 (407)
111 COG0189 RimK Glutathione synth 99.3 5.3E-09 1.3E-13 89.1 22.1 277 27-377 16-308 (318)
112 TIGR01161 purK phosphoribosyla 99.3 7.6E-09 1.9E-13 87.8 21.6 288 621-960 2-315 (386)
113 TIGR00768 rimK_fam alpha-L-glu 99.3 2E-08 5E-13 84.6 23.7 280 29-376 19-317 (321)
114 TIGR01142 purT phosphoribosylg 99.3 2.8E-09 7.2E-14 91.2 18.9 303 620-959 1-314 (407)
115 COG0189 RimK Glutathione synth 99.3 9.6E-09 2.4E-13 87.0 21.2 277 636-953 14-311 (318)
116 TIGR00768 rimK_fam alpha-L-glu 99.3 2.6E-09 6.5E-14 91.6 18.1 271 639-951 18-319 (321)
117 TIGR03103 trio_acet_GNAT GNAT- 99.2 1.7E-09 4.3E-14 93.0 14.7 119 702-852 269-388 (547)
118 KOG0237 consensus 99.0 1.3E-06 3.3E-11 70.2 24.0 442 8-560 3-495 (788)
119 TIGR02068 cya_phycin_syn cyano 99.0 4.9E-09 1.3E-13 89.3 10.1 279 60-451 156-478 (876)
120 TIGR02144 LysX_arch Lysine bio 98.9 2.1E-07 5.4E-12 76.4 16.8 255 645-952 16-282 (289)
121 COG3919 Predicted ATP-grasp en 98.9 1.2E-07 3.1E-12 78.3 15.3 276 9-374 5-304 (415)
122 PRK13278 purP 5-formaminoimida 98.9 2.7E-06 6.8E-11 67.7 21.0 258 9-357 20-310 (356)
123 PRK13278 purP 5-formaminoimida 98.9 3.2E-07 8.2E-12 75.0 16.1 274 618-937 18-318 (356)
124 COG1759 5-formaminoimidazole-4 98.8 1E-06 2.6E-11 71.1 17.2 264 9-358 20-316 (361)
125 pfam08442 ATP-grasp_2 ATP-gras 98.8 1.4E-07 3.6E-12 77.8 12.8 166 131-357 6-201 (202)
126 PRK02471 bifunctional glutamat 98.8 8.6E-07 2.2E-11 71.6 16.2 102 729-854 481-586 (753)
127 TIGR02144 LysX_arch Lysine bio 98.8 1.1E-07 2.9E-12 78.6 11.3 257 33-379 15-282 (289)
128 COG1821 Predicted ATP-utilizin 98.8 1.2E-07 3E-12 78.4 11.2 255 28-387 25-286 (307)
129 PRK13277 5-formaminoimidazole- 98.8 3.1E-06 7.9E-11 67.2 17.5 262 9-358 16-317 (363)
130 TIGR02068 cya_phycin_syn cyano 98.7 7.1E-08 1.8E-12 80.1 8.8 384 675-1134 160-583 (876)
131 KOG0237 consensus 98.7 2.6E-06 6.8E-11 67.7 16.7 302 620-962 4-327 (788)
132 COG1821 Predicted ATP-utilizin 98.7 1.7E-07 4.3E-12 77.2 10.1 257 641-959 27-285 (307)
133 PRK13277 5-formaminoimidazole- 98.7 2.7E-05 6.8E-10 59.8 20.4 268 617-932 13-318 (363)
134 cd01421 IMPCH Inosine monophos 98.6 7.5E-07 1.9E-11 72.0 9.5 111 1033-1145 2-156 (187)
135 TIGR03103 trio_acet_GNAT GNAT- 98.5 2.7E-06 6.8E-11 67.7 10.6 250 30-357 200-522 (547)
136 PRK06524 biotin carboxylase-li 98.5 1.5E-05 3.9E-10 61.7 14.1 223 684-940 81-319 (480)
137 PRK06524 biotin carboxylase-li 98.4 1.3E-05 3.3E-10 62.3 13.3 231 70-369 79-321 (480)
138 COG1759 5-formaminoimidazole-4 98.4 8.2E-05 2.1E-09 55.9 17.2 265 619-932 19-317 (361)
139 pfam08442 ATP-grasp_2 ATP-gras 98.3 3.9E-06 9.9E-11 66.4 8.5 172 741-929 7-200 (202)
140 PRK05234 mgsA methylglyoxal sy 98.2 2.4E-05 6.2E-10 60.1 10.1 133 1028-1160 2-141 (146)
141 pfam02955 GSH-S_ATP Prokaryoti 98.2 0.00016 4E-09 53.7 14.2 158 752-943 12-175 (176)
142 PRK00696 sucC succinyl-CoA syn 98.2 0.00013 3.2E-09 54.4 13.4 173 741-930 8-202 (388)
143 COG0045 SucC Succinyl-CoA synt 98.1 0.00028 7.2E-09 51.6 14.6 170 741-930 8-200 (387)
144 COG3919 Predicted ATP-grasp en 98.1 5.4E-05 1.4E-09 57.4 10.0 284 619-953 4-310 (415)
145 PRK02471 bifunctional glutamat 98.0 7.9E-05 2E-09 56.0 10.2 224 623-947 496-745 (753)
146 PRK00881 purH bifunctional pho 98.0 1.3E-05 3.4E-10 62.1 4.9 23 438-460 282-304 (514)
147 COG1803 MgsA Methylglyoxal syn 97.9 0.00025 6.4E-09 52.1 10.9 131 1029-1159 2-139 (142)
148 cd01422 MGS Methylglyoxal synt 97.9 0.00019 4.8E-09 53.1 9.8 105 1036-1140 4-115 (115)
149 PRK05246 glutathione synthetas 97.9 0.0027 7E-08 43.8 15.4 197 717-951 105-307 (316)
150 pfam02955 GSH-S_ATP Prokaryoti 97.8 0.0019 4.9E-08 45.1 13.2 135 202-355 18-160 (176)
151 COG0045 SucC Succinyl-CoA synt 97.7 0.00079 2E-08 48.1 10.7 166 131-357 7-200 (387)
152 pfam05770 Ins134_P3_kin Inosit 97.5 0.012 3.2E-07 38.6 15.6 235 32-355 26-287 (307)
153 TIGR01016 sucCoAbeta succinyl- 97.5 0.0014 3.7E-08 46.0 9.3 340 740-1142 7-387 (389)
154 PRK00696 sucC succinyl-CoA syn 97.4 0.0035 8.9E-08 43.0 10.9 140 131-330 7-169 (388)
155 COG0138 PurH AICAR transformyl 97.4 8.8E-05 2.2E-09 55.7 2.6 12 134-145 37-48 (515)
156 TIGR00160 MGSA methylglyoxal s 97.3 0.00051 1.3E-08 49.6 5.6 125 1036-1160 7-138 (143)
157 TIGR01016 sucCoAbeta succinyl- 97.2 0.0053 1.3E-07 41.6 9.8 101 131-284 7-123 (389)
158 PRK12458 glutathione synthetas 97.0 0.04 1E-06 34.6 14.9 201 715-952 114-326 (349)
159 PRK06130 3-hydroxybutyryl-CoA 96.8 0.02 5.1E-07 37.0 9.9 225 1-300 1-242 (310)
160 pfam05770 Ins134_P3_kin Inosit 96.7 0.06 1.5E-06 33.2 14.7 187 710-929 66-288 (307)
161 KOG2555 consensus 96.7 0.0014 3.5E-08 46.2 3.0 22 656-677 261-285 (588)
162 COG1064 AdhP Zn-dependent alco 96.6 0.029 7.5E-07 35.7 9.5 144 611-776 160-308 (339)
163 PRK07531 bifunctional 3-hydrox 96.5 0.038 9.7E-07 34.8 9.6 163 7-224 2-180 (489)
164 TIGR03201 dearomat_had 6-hydro 96.3 0.1 2.7E-06 31.3 10.6 41 615-666 164-204 (349)
165 PRK07660 consensus 96.3 0.034 8.8E-07 35.1 8.1 227 6-300 2-242 (283)
166 PRK10669 putative cation:proto 96.2 0.017 4.3E-07 37.6 6.3 133 618-774 417-550 (558)
167 PRK10309 galactitol-1-phosphat 96.2 0.025 6.3E-07 36.3 7.1 101 616-731 159-265 (347)
168 pfam02844 GARS_N Phosphoribosy 96.2 0.069 1.8E-06 32.7 9.3 94 9-123 1-96 (99)
169 PRK13608 diacylglycerol glucos 96.1 0.066 1.7E-06 32.9 8.9 20 72-91 94-113 (391)
170 pfam02254 TrkA_N TrkA-N domain 96.1 0.012 3E-07 38.8 4.9 107 10-141 1-109 (115)
171 PRK07066 3-hydroxybutyryl-CoA 96.1 0.1 2.7E-06 31.3 9.7 41 1-52 1-41 (321)
172 PRK03659 glutathione-regulated 96.1 0.13 3.3E-06 30.6 10.1 137 617-774 399-537 (602)
173 PRK07530 3-hydroxybutyryl-CoA 96.0 0.054 1.4E-06 33.6 8.1 227 5-298 2-241 (292)
174 pfam06849 DUF1246 Protein of u 96.0 0.027 6.9E-07 36.0 6.5 112 28-146 7-122 (124)
175 PRK09880 L-idonate 5-dehydroge 96.0 0.029 7.4E-07 35.7 6.6 100 617-731 169-271 (343)
176 PRK05808 3-hydroxybutyryl-CoA 95.9 0.051 1.3E-06 33.8 7.5 226 6-299 2-241 (282)
177 TIGR03366 HpnZ_proposed putati 95.9 0.044 1.1E-06 34.3 7.1 152 616-783 119-277 (280)
178 PRK00045 hemA glutamyl-tRNA re 95.9 0.039 1E-06 34.7 6.8 159 499-690 76-241 (429)
179 PRK09117 consensus 95.8 0.066 1.7E-06 32.9 7.7 227 6-299 1-240 (282)
180 PRK06035 3-hydroxyacyl-CoA deh 95.8 0.067 1.7E-06 32.8 7.8 39 6-55 2-40 (291)
181 PRK03562 glutathione-regulated 95.7 0.028 7.3E-07 35.8 5.6 136 618-774 399-536 (615)
182 PRK03562 glutathione-regulated 95.7 0.087 2.2E-06 31.9 7.9 79 701-779 402-497 (615)
183 PRK03659 glutathione-regulated 95.6 0.037 9.3E-07 34.9 5.8 79 701-779 403-498 (602)
184 COG0569 TrkA K+ transport syst 95.6 0.063 1.6E-06 33.1 7.0 82 8-100 1-85 (225)
185 TIGR03451 mycoS_dep_FDH mycoth 95.6 0.072 1.8E-06 32.6 7.2 98 615-728 174-278 (358)
186 PRK13361 molybdenum cofactor b 95.6 0.18 4.5E-06 29.5 9.1 124 642-805 51-180 (329)
187 PRK09496 trkA potassium transp 95.5 0.068 1.7E-06 32.8 7.0 129 618-769 232-363 (455)
188 PRK09260 3-hydroxybutyryl-CoA 95.4 0.01 2.5E-07 39.4 2.4 224 7-297 2-239 (289)
189 PRK13771 putative alcohol dehy 95.2 0.057 1.5E-06 33.4 5.8 94 616-727 161-256 (332)
190 pfam06849 DUF1246 Protein of u 95.2 0.11 2.7E-06 31.3 7.0 109 639-755 7-122 (124)
191 PRK08268 3-hydroxybutyryl-CoA 95.2 0.16 4.2E-06 29.8 7.9 225 6-300 2-242 (503)
192 TIGR01179 galE UDP-glucose 4-e 95.2 0.062 1.6E-06 33.1 5.8 65 9-88 1-82 (341)
193 PRK05396 tdh L-threonine 3-deh 95.1 0.18 4.6E-06 29.5 8.0 100 618-731 164-268 (341)
194 COG1087 GalE UDP-glucose 4-epi 95.1 0.2 5E-06 29.1 8.1 68 8-89 1-74 (329)
195 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.051 1.3E-06 33.8 4.9 38 7-55 2-39 (308)
196 PRK11730 fadB multifunctional 94.8 0.28 7.2E-06 27.9 8.4 42 616-668 311-352 (715)
197 PRK05246 glutathione synthetas 94.7 0.34 8.8E-06 27.2 9.6 269 29-375 20-304 (316)
198 PRK03369 murD UDP-N-acetylmura 94.6 0.36 9.2E-06 27.0 10.6 71 5-92 10-80 (487)
199 PRK08293 3-hydroxybutyryl-CoA 94.4 0.023 5.8E-07 36.5 1.9 230 6-301 2-246 (288)
200 PRK09422 alcohol dehydrogenase 94.3 0.21 5.4E-06 28.9 6.8 139 614-770 159-301 (338)
201 PRK10669 putative cation:proto 94.3 0.24 6E-06 28.5 6.9 80 701-780 420-516 (558)
202 COG1063 Tdh Threonine dehydrog 94.3 0.28 7.3E-06 27.9 7.3 138 620-773 171-314 (350)
203 PRK00164 moaA molybdenum cofac 94.2 0.26 6.7E-06 28.1 7.0 129 642-805 57-186 (334)
204 PRK12770 putative glutamate sy 94.2 0.11 2.8E-06 31.1 5.1 42 611-663 10-51 (350)
205 PRK10083 putative dehydrogenas 94.2 0.19 4.9E-06 29.2 6.3 101 615-730 158-263 (339)
206 CHL00194 ycf39 Ycf39; Provisio 94.1 0.45 1.2E-05 26.3 11.6 71 9-91 2-73 (319)
207 PRK07502 cyclohexadienyl dehyd 94.1 0.11 2.7E-06 31.2 4.9 43 1-55 1-45 (307)
208 PRK09496 trkA potassium transp 94.1 0.19 4.9E-06 29.2 6.2 36 9-55 2-37 (455)
209 PRK11154 fadJ multifunctional 94.0 0.43 1.1E-05 26.4 7.9 44 616-669 307-350 (706)
210 pfam00743 FMO-like Flavin-bind 93.7 0.1 2.5E-06 31.5 4.0 32 8-50 2-33 (532)
211 pfam02844 GARS_N Phosphoribosy 93.5 0.43 1.1E-05 26.5 7.0 92 620-731 1-95 (99)
212 PRK01438 murD UDP-N-acetylmura 93.3 0.61 1.6E-05 25.2 11.4 133 8-220 15-152 (481)
213 PRK12458 glutathione synthetas 93.2 0.42 1.1E-05 26.5 6.6 154 203-375 154-322 (349)
214 PRK08773 2-octaprenyl-3-methyl 93.1 0.21 5.4E-06 28.9 5.0 39 1-51 1-39 (392)
215 PRK12770 putative glutamate sy 93.1 0.14 3.5E-06 30.3 4.0 35 6-51 16-50 (350)
216 cd05213 NAD_bind_Glutamyl_tRNA 93.0 0.69 1.8E-05 24.8 8.1 155 519-711 91-252 (311)
217 COG1148 HdrA Heterodisulfide r 92.9 0.15 3.8E-06 30.1 4.0 83 1008-1090 412-504 (622)
218 pfam01370 Epimerase NAD depend 92.9 0.66 1.7E-05 25.0 7.2 71 10-90 1-73 (235)
219 PRK07417 arogenate dehydrogena 92.9 0.25 6.4E-06 28.3 5.1 36 9-55 3-38 (280)
220 PRK05335 tRNA (uracil-5-)-meth 92.8 0.53 1.4E-05 25.7 6.7 37 7-54 3-39 (434)
221 pfam01134 GIDA Glucose inhibit 92.6 0.39 9.9E-06 26.8 5.8 31 9-50 1-31 (391)
222 pfam02737 3HCDH_N 3-hydroxyacy 92.5 0.051 1.3E-06 33.8 1.1 164 9-222 1-178 (180)
223 pfam00899 ThiF ThiF family. Th 92.5 0.7 1.8E-05 24.8 6.9 115 8-147 2-123 (134)
224 TIGR02717 AcCoA-syn-alpha acet 92.4 0.31 8E-06 27.5 5.1 111 680-803 75-203 (457)
225 pfam01488 Shikimate_DH Shikima 92.3 0.17 4.5E-06 29.5 3.7 73 7-95 12-88 (134)
226 PRK13940 glutamyl-tRNA reducta 92.3 0.44 1.1E-05 26.4 5.7 117 519-664 94-217 (414)
227 PRK10754 quinone oxidoreductas 92.3 0.48 1.2E-05 26.1 5.9 91 618-721 141-233 (327)
228 COG2896 MoaA Molybdenum cofact 92.2 0.77 2E-05 24.4 6.9 127 642-804 49-176 (322)
229 TIGR03385 CoA_CoA_reduc CoA-di 92.1 0.54 1.4E-05 25.7 6.0 19 490-508 388-406 (427)
230 PRK06847 hypothetical protein; 92.1 0.28 7.2E-06 27.9 4.5 36 6-52 3-38 (375)
231 PRK11749 putative oxidoreducta 92.0 0.35 8.9E-06 27.1 5.0 38 615-663 137-174 (460)
232 PRK08850 2-octaprenyl-6-methox 92.0 0.36 9.3E-06 27.0 5.0 37 1-51 1-37 (405)
233 PRK00683 murD UDP-N-acetylmura 92.0 0.88 2.3E-05 24.0 9.3 68 6-92 2-69 (418)
234 pfam04321 RmlD_sub_bind RmlD s 92.0 0.89 2.3E-05 24.0 10.6 56 10-90 1-57 (284)
235 PRK05192 tRNA uridine 5-carbox 91.9 0.79 2E-05 24.4 6.6 98 9-144 8-116 (621)
236 pfam02571 CbiJ Precorrin-6x re 91.7 0.95 2.4E-05 23.7 12.8 223 8-392 1-225 (246)
237 TIGR00959 ffh signal recogniti 91.6 0.29 7.4E-06 27.8 4.1 67 641-719 179-245 (439)
238 PRK07208 hypothetical protein; 91.5 0.33 8.4E-06 27.4 4.4 34 7-51 3-36 (474)
239 pfam01326 PPDK_N Pyruvate phos 91.5 0.99 2.5E-05 23.6 7.5 45 883-929 258-302 (327)
240 KOG0024 consensus 91.4 0.68 1.7E-05 24.9 5.9 10 620-629 172-181 (354)
241 KOG2799 consensus 91.3 0.87 2.2E-05 24.0 6.3 64 742-805 31-106 (434)
242 TIGR03169 Nterm_to_SelD pyridi 91.2 0.58 1.5E-05 25.4 5.4 79 10-127 2-83 (364)
243 pfam07992 Pyr_redox_2 Pyridine 91.2 0.68 1.7E-05 24.9 5.7 32 10-52 2-33 (277)
244 PRK07608 hypothetical protein; 91.2 0.37 9.5E-06 26.9 4.3 36 9-55 7-42 (389)
245 PRK00066 ldh L-lactate dehydro 91.1 1 2.6E-05 23.4 6.6 39 1-52 2-42 (315)
246 PRK05714 2-octaprenyl-3-methyl 91.0 0.38 9.7E-06 26.9 4.3 56 10-76 5-64 (405)
247 cd01075 NAD_bind_Leu_Phe_Val_D 91.0 1.1 2.8E-05 23.2 7.1 113 8-150 29-142 (200)
248 KOG1371 consensus 91.0 0.98 2.5E-05 23.6 6.3 77 8-95 3-89 (343)
249 PTZ00318 NADH dehydrogenase; P 90.9 0.39 9.9E-06 26.8 4.2 34 8-52 11-44 (514)
250 cd01977 Nitrogenase_VFe_alpha 90.7 0.78 2E-05 24.4 5.7 32 618-660 288-320 (415)
251 PRK12810 gltD glutamate syntha 90.6 0.58 1.5E-05 25.4 4.9 37 616-663 141-177 (472)
252 PRK08013 hypothetical protein; 90.6 0.44 1.1E-05 26.4 4.3 57 9-76 5-63 (400)
253 PRK09126 hypothetical protein; 90.5 0.5 1.3E-05 25.9 4.5 39 9-58 5-43 (392)
254 PRK08020 ubiF 2-octaprenyl-3-m 90.5 0.63 1.6E-05 25.1 5.0 34 8-52 6-39 (391)
255 TIGR00315 cdhB CO dehydrogenas 90.5 0.27 6.9E-06 28.0 3.1 65 1033-1100 31-97 (170)
256 COG0541 Ffh Signal recognition 90.5 1.2 3E-05 23.0 6.4 45 203-253 169-213 (451)
257 pfam01408 GFO_IDH_MocA Oxidore 90.4 0.78 2E-05 24.4 5.4 82 9-106 2-86 (120)
258 PRK00945 acetyl-CoA decarbonyl 90.0 1.3 3.3E-05 22.7 6.3 81 1015-1105 24-115 (171)
259 PRK13512 coenzyme A disulfide 89.9 0.55 1.4E-05 25.6 4.3 33 8-51 2-36 (438)
260 PRK04308 murD UDP-N-acetylmura 89.9 1.3 3.4E-05 22.5 10.1 140 8-234 6-149 (445)
261 TIGR02023 BchP-ChlP geranylger 89.8 0.48 1.2E-05 26.1 4.0 29 10-49 3-31 (408)
262 PRK12814 putative NADPH-depend 89.8 0.83 2.1E-05 24.2 5.1 42 612-664 187-228 (652)
263 PRK00141 murD UDP-N-acetylmura 89.7 1.4 3.5E-05 22.4 9.6 35 8-53 18-52 (476)
264 PRK12831 putative oxidoreducta 89.7 0.78 2E-05 24.4 4.9 40 614-664 136-175 (464)
265 cd01489 Uba2_SUMO Ubiquitin ac 89.6 0.61 1.5E-05 25.3 4.3 112 9-149 1-124 (312)
266 COG1148 HdrA Heterodisulfide r 89.6 0.55 1.4E-05 25.6 4.1 35 618-663 124-158 (622)
267 PRK10675 UDP-galactose-4-epime 89.4 1.5 3.7E-05 22.3 6.4 76 9-95 2-85 (338)
268 PRK05444 1-deoxy-D-xylulose-5- 89.4 1.5 3.7E-05 22.2 6.5 103 617-752 452-565 (576)
269 cd01976 Nitrogenase_MoFe_alpha 89.3 1.5 3.8E-05 22.2 8.6 66 619-694 31-99 (421)
270 PRK08849 2-octaprenyl-3-methyl 89.3 0.69 1.8E-05 24.8 4.4 31 9-50 5-35 (384)
271 TIGR01372 soxA sarcosine oxida 89.3 0.66 1.7E-05 25.0 4.3 138 946-1117 793-948 (1026)
272 PRK05370 argininosuccinate syn 89.2 1.5 3.8E-05 22.1 8.4 77 7-93 11-97 (447)
273 PRK05447 1-deoxy-D-xylulose 5- 89.1 1.5 3.8E-05 22.1 8.5 120 8-145 2-143 (379)
274 PRK07364 2-octaprenyl-6-methox 89.1 0.68 1.7E-05 24.9 4.3 34 9-53 19-52 (413)
275 cd01484 E1-2_like Ubiquitin ac 89.1 1.3 3.2E-05 22.8 5.6 115 9-150 1-126 (234)
276 smart00829 PKS_ER Enoylreducta 89.0 1.2 3E-05 23.0 5.5 40 701-751 108-151 (288)
277 PRK12778 putative bifunctional 88.7 1 2.6E-05 23.5 4.9 39 612-661 433-471 (760)
278 PTZ00318 NADH dehydrogenase; P 88.7 0.64 1.6E-05 25.1 3.9 33 618-661 10-42 (514)
279 PRK12771 putative glutamate sy 88.5 1.2 3E-05 23.0 5.2 39 615-664 134-172 (560)
280 pfam00070 Pyr_redox Pyridine n 88.5 0.62 1.6E-05 25.2 3.7 32 9-51 1-32 (82)
281 PRK06912 acoL dihydrolipoamide 88.4 0.78 2E-05 24.4 4.2 44 482-525 404-448 (458)
282 PRK09564 coenzyme A disulfide 88.4 0.49 1.3E-05 26.0 3.2 31 9-50 2-34 (443)
283 PRK07819 3-hydroxybutyryl-CoA 88.4 0.74 1.9E-05 24.6 4.0 39 6-55 1-39 (284)
284 PRK05993 short chain dehydroge 88.4 1.7 4.3E-05 21.8 9.9 32 8-49 5-36 (277)
285 PRK08774 consensus 88.3 0.94 2.4E-05 23.7 4.6 38 1-52 1-38 (402)
286 TIGR01214 rmlD dTDP-4-dehydror 88.2 1.2 3.1E-05 22.8 5.1 194 9-279 1-200 (317)
287 PRK04965 nitric oxide reductas 88.2 0.97 2.5E-05 23.6 4.6 24 8-42 3-26 (378)
288 PRK03806 murD UDP-N-acetylmura 88.2 1.7 4.4E-05 21.7 7.8 67 8-91 7-74 (438)
289 PRK06617 2-octaprenyl-6-methox 88.0 1.1 2.9E-05 23.2 4.8 33 8-51 2-34 (374)
290 PRK06185 hypothetical protein; 87.8 1 2.6E-05 23.5 4.5 38 1-52 3-40 (409)
291 TIGR02666 moaA molybdenum cofa 87.8 1.8 4.6E-05 21.5 5.7 110 678-805 72-184 (346)
292 TIGR02053 MerA mercuric reduct 87.8 0.52 1.3E-05 25.8 2.9 391 9-515 2-469 (494)
293 cd05290 LDH_3 A subgroup of L- 87.7 1.6 4.2E-05 21.8 5.5 32 9-51 1-34 (307)
294 pfam01262 AlaDh_PNT_C Alanine 87.7 0.73 1.9E-05 24.6 3.7 37 8-55 21-57 (150)
295 KOG1399 consensus 87.5 0.73 1.8E-05 24.7 3.6 32 6-48 5-36 (448)
296 COG0313 Predicted methyltransf 87.4 1.9 4.8E-05 21.4 8.4 52 1077-1128 188-248 (275)
297 KOG2495 consensus 87.3 1.8 4.5E-05 21.6 5.5 56 614-693 51-121 (491)
298 pfam11379 DUF3182 Protein of u 87.3 1.9 4.9E-05 21.3 9.6 120 197-320 115-251 (355)
299 PRK10217 dTDP-glucose 4,6-dehy 87.2 1.9 4.9E-05 21.3 7.5 78 8-96 2-87 (355)
300 COG0654 UbiH 2-polyprenyl-6-me 87.2 1.4 3.5E-05 22.5 4.9 35 7-52 2-36 (387)
301 COG0644 FixC Dehydrogenases (f 87.1 1.6 4.1E-05 21.9 5.2 58 8-83 4-62 (396)
302 PRK09355 hydroxyethylthiazole 87.1 0.29 7.5E-06 27.8 1.4 24 202-225 70-93 (262)
303 PRK09987 dTDP-4-dehydrorhamnos 87.0 2 5.1E-05 21.2 9.4 100 9-145 2-101 (299)
304 TIGR03407 urea_ABC_UrtA urea A 87.0 2 5.1E-05 21.2 7.9 81 617-723 133-215 (359)
305 PRK12769 putative oxidoreducta 87.0 1.8 4.6E-05 21.5 5.4 32 616-658 325-356 (654)
306 PRK06115 dihydrolipoamide dehy 86.9 2 5.2E-05 21.1 5.9 43 482-524 412-455 (466)
307 pfam02826 2-Hacid_dh_C D-isome 86.9 2 5.2E-05 21.1 6.0 33 8-51 37-69 (176)
308 pfam06973 DUF1297 Domain of un 86.9 2 5E-05 21.2 5.5 27 329-357 116-142 (188)
309 PRK08508 biotin synthase; Prov 86.8 2 5.2E-05 21.1 6.2 152 572-752 109-274 (279)
310 PRK13301 putative L-aspartate 86.7 2.1 5.2E-05 21.1 9.4 192 8-278 3-213 (267)
311 PRK06182 short chain dehydroge 86.5 2.1 5.4E-05 21.0 8.7 20 30-49 16-35 (273)
312 PRK05868 hypothetical protein; 86.5 1.3 3.2E-05 22.8 4.3 35 7-52 1-35 (372)
313 PRK12533 RNA polymerase sigma 86.4 1.7 4.5E-05 21.6 5.1 43 527-570 131-173 (217)
314 PRK02472 murD UDP-N-acetylmura 86.4 1.5 3.7E-05 22.2 4.6 40 1-51 1-42 (450)
315 KOG0029 consensus 86.3 1.3 3.2E-05 22.8 4.3 36 3-49 11-46 (501)
316 PRK12809 putative oxidoreducta 86.2 1.6 4.2E-05 21.8 4.8 36 617-663 309-344 (639)
317 PRK06241 phosphoenolpyruvate s 86.1 2.2 5.6E-05 20.8 5.7 46 306-356 263-308 (870)
318 PRK06184 hypothetical protein; 86.0 1.2 3.2E-05 22.8 4.1 36 8-54 7-42 (503)
319 PRK07845 flavoprotein disulfid 86.0 1.3 3.4E-05 22.5 4.3 44 482-525 413-457 (467)
320 COG0646 MetH Methionine syntha 85.9 2.3 5.7E-05 20.8 8.0 149 619-803 113-281 (311)
321 COG1091 RfbD dTDP-4-dehydrorha 85.8 2.3 5.8E-05 20.7 8.5 164 9-242 2-166 (281)
322 PRK08243 4-hydroxybenzoate 3-m 85.8 1.3 3.4E-05 22.5 4.2 33 9-52 4-36 (392)
323 PRK06126 hypothetical protein; 85.7 1.7 4.3E-05 21.7 4.7 37 8-55 8-44 (545)
324 PRK06183 mhpA 3-(3-hydroxyphen 85.7 1.3 3.2E-05 22.8 4.0 36 8-54 13-48 (554)
325 cd01483 E1_enzyme_family Super 85.7 2.3 5.8E-05 20.7 6.8 116 9-148 1-122 (143)
326 TIGR03023 WcaJ_sugtrans Undeca 85.7 2.3 5.9E-05 20.7 10.5 87 618-724 128-221 (451)
327 PRK13984 putative oxidoreducta 85.7 2 5.2E-05 21.1 5.1 38 615-663 280-317 (604)
328 PRK06753 hypothetical protein; 85.5 1.4 3.6E-05 22.4 4.2 33 9-52 2-34 (373)
329 PRK08507 prephenate dehydrogen 85.5 1.5 3.7E-05 22.2 4.3 35 9-54 2-38 (275)
330 PRK06719 precorrin-2 dehydroge 85.5 1.7 4.2E-05 21.8 4.5 35 6-51 12-46 (157)
331 PRK06567 putative bifunctional 85.5 1.3 3.2E-05 22.8 3.9 35 1024-1061 906-940 (1048)
332 PRK07494 2-octaprenyl-6-methox 85.4 1.2 3.1E-05 22.8 3.8 34 8-52 6-39 (386)
333 PRK09754 phenylpropionate diox 85.2 1.5 3.8E-05 22.2 4.2 80 8-126 4-87 (400)
334 TIGR02032 GG-red-SF geranylger 85.1 1.4 3.5E-05 22.5 4.0 29 10-49 3-31 (343)
335 PRK08010 pyridine nucleotide-d 84.9 1.3 3.4E-05 22.6 3.8 46 482-527 393-439 (441)
336 COG1042 Acyl-CoA synthetase (N 84.7 2.5 6.4E-05 20.4 5.8 141 647-804 369-538 (598)
337 PRK05976 dihydrolipoamide dehy 84.7 2.1 5.3E-05 21.0 4.7 44 482-525 410-454 (464)
338 PRK10262 thioredoxin reductase 84.5 1.7 4.2E-05 21.8 4.2 32 7-49 6-37 (321)
339 PRK07236 hypothetical protein; 84.5 1.5 4E-05 22.0 4.0 37 1-49 1-37 (386)
340 PRK08244 hypothetical protein; 84.5 1.5 3.8E-05 22.2 3.9 35 9-54 4-38 (494)
341 COG1252 Ndh NADH dehydrogenase 84.2 2.4 6.1E-05 20.5 4.9 38 7-55 3-42 (405)
342 COG1154 Dxs Deoxyxylulose-5-ph 84.2 2.7 6.8E-05 20.2 8.9 233 482-753 351-612 (627)
343 cd01065 NAD_bind_Shikimate_DH 84.2 1.4 3.5E-05 22.5 3.6 34 7-51 19-53 (155)
344 PRK01390 murD UDP-N-acetylmura 84.1 1.6 4.1E-05 21.9 4.0 36 8-54 10-45 (457)
345 TIGR01035 hemA glutamyl-tRNA r 84.1 1.5 3.9E-05 22.1 3.8 123 509-658 84-214 (436)
346 TIGR02903 spore_lon_C ATP-depe 84.0 0.76 1.9E-05 24.5 2.2 46 722-772 231-276 (616)
347 cd00616 AHBA_syn 3-amino-5-hyd 83.9 2.7 6.9E-05 20.1 8.7 30 639-668 66-95 (352)
348 PRK06834 hypothetical protein; 83.8 1.9 4.8E-05 21.4 4.2 35 8-53 4-38 (488)
349 TIGR03452 mycothione_red mycot 83.6 1.4 3.5E-05 22.5 3.4 33 491-523 414-447 (452)
350 COG0182 Predicted translation 83.4 2.8 7.2E-05 20.0 5.6 34 407-442 266-299 (346)
351 PRK07251 pyridine nucleotide-d 83.4 2 5.1E-05 21.2 4.2 45 482-526 392-437 (438)
352 TIGR02356 adenyl_thiF thiazole 83.4 2.8 7.2E-05 20.0 7.3 29 8-47 22-50 (210)
353 PRK13609 diacylglycerol glucos 83.2 2.9 7.3E-05 19.9 6.1 79 8-91 5-113 (388)
354 TIGR02668 moaA_archaeal probab 83.1 2.9 7.4E-05 19.9 6.9 174 644-901 54-230 (324)
355 PRK05732 2-octaprenyl-6-methox 83.1 2.6 6.6E-05 20.3 4.7 32 9-51 5-39 (395)
356 PRK00078 Maf-like protein; Rev 83.1 2.7 6.9E-05 20.1 4.8 82 657-751 110-191 (192)
357 KOG1706 consensus 83.1 2.9 7.4E-05 19.9 6.1 166 5-224 3-177 (412)
358 PRK08401 L-aspartate oxidase; 83.0 2.5 6.3E-05 20.4 4.5 34 8-52 2-35 (464)
359 PRK06292 dihydrolipoamide dehy 82.9 2.1 5.3E-05 21.0 4.1 44 482-525 406-450 (460)
360 PRK07057 sdhA succinate dehydr 82.8 1.9 4.7E-05 21.4 3.9 33 8-51 13-45 (591)
361 TIGR02152 D_ribokin_bact ribok 82.8 2.3 5.8E-05 20.7 4.3 86 27-144 64-161 (303)
362 TIGR02028 ChlP geranylgeranyl 82.8 2 5.2E-05 21.1 4.1 169 9-218 2-186 (401)
363 PRK08163 salicylate hydroxylas 82.6 2.8 7.1E-05 20.0 4.7 38 1-52 1-38 (396)
364 TIGR03025 EPS_sugtrans exopoly 82.5 3.1 7.8E-05 19.7 10.1 30 617-657 124-156 (445)
365 PRK09424 pntA NAD(P) transhydr 82.5 3.1 7.8E-05 19.7 7.3 33 620-663 167-199 (510)
366 COG4495 Uncharacterized protei 82.3 0.45 1.1E-05 26.3 0.5 27 5-31 19-45 (109)
367 PRK01747 mnmC 5-methylaminomet 82.1 2.7 7E-05 20.1 4.5 36 616-662 254-289 (660)
368 PRK08948 consensus 82.0 3 7.5E-05 19.8 4.6 46 9-65 2-50 (392)
369 PRK07333 2-octaprenyl-6-methox 82.0 3 7.5E-05 19.8 4.6 34 9-53 3-38 (403)
370 PRK02006 murD UDP-N-acetylmura 81.9 3.2 8.1E-05 19.6 4.9 146 2-220 2-152 (501)
371 PRK05249 soluble pyridine nucl 81.9 2.3 5.8E-05 20.7 4.0 32 9-51 8-39 (465)
372 PRK07190 hypothetical protein; 81.9 2.4 6.1E-05 20.5 4.1 39 6-55 4-42 (480)
373 PRK06116 glutathione reductase 81.9 1.9 4.9E-05 21.3 3.6 40 482-521 406-446 (450)
374 PRK06370 mercuric reductase; V 81.8 2.5 6.3E-05 20.4 4.2 45 482-526 408-453 (459)
375 PRK06731 flhF flagellar biosyn 81.8 3.2 8.2E-05 19.5 6.7 91 618-719 103-210 (270)
376 KOG0256 consensus 81.8 3.2 8.2E-05 19.5 5.2 42 758-804 210-255 (471)
377 COG1249 Lpd Pyruvate/2-oxoglut 81.7 1.8 4.6E-05 21.5 3.5 76 442-523 376-452 (454)
378 PRK12571 1-deoxy-D-xylulose-5- 81.5 3.3 8.4E-05 19.5 5.8 50 620-691 507-556 (642)
379 PRK13175 consensus 81.5 2.4 6.1E-05 20.6 4.0 32 8-49 2-33 (206)
380 COG0771 MurD UDP-N-acetylmuram 81.4 3.3 8.4E-05 19.4 9.1 36 7-53 7-42 (448)
381 PRK08132 hypothetical protein; 81.4 2.3 5.9E-05 20.7 3.9 36 8-54 24-59 (549)
382 cd01490 Ube1_repeat2 Ubiquitin 81.3 3.3 8.5E-05 19.4 5.0 122 9-150 1-133 (435)
383 PRK06718 precorrin-2 dehydroge 81.3 3.1 7.9E-05 19.7 4.5 34 7-51 10-43 (202)
384 pfam01494 FAD_binding_3 FAD bi 81.3 2.4 6.1E-05 20.5 4.0 32 10-52 4-35 (349)
385 PRK07588 hypothetical protein; 81.1 2.5 6.3E-05 20.4 4.0 32 9-51 2-33 (391)
386 PRK08641 sdhA succinate dehydr 81.1 2.2 5.7E-05 20.8 3.7 36 1-51 1-36 (589)
387 TIGR00692 tdh L-threonine 3-de 81.0 2.5 6.4E-05 20.4 4.0 163 8-279 163-334 (341)
388 TIGR02823 oxido_YhdH putative 80.9 3.4 8.7E-05 19.3 6.1 83 997-1082 113-201 (330)
389 PRK04690 murD UDP-N-acetylmura 80.9 3.4 8.8E-05 19.3 10.8 87 8-117 9-98 (468)
390 TIGR00328 flhB flagellar biosy 80.9 2.6 6.6E-05 20.3 4.0 63 1080-1142 228-323 (352)
391 PRK06327 dihydrolipoamide dehy 80.7 3 7.6E-05 19.8 4.3 43 482-524 421-464 (475)
392 PRK07233 hypothetical protein; 80.7 2.1 5.4E-05 21.0 3.5 32 9-51 1-32 (430)
393 PRK07804 L-aspartate oxidase; 80.7 2 5.2E-05 21.1 3.4 35 6-51 14-48 (533)
394 TIGR00355 purH bifunctional pu 80.7 1.3 3.2E-05 22.8 2.3 40 639-678 269-311 (569)
395 COG0446 HcaD Uncharacterized N 80.7 2.9 7.3E-05 19.9 4.2 18 641-658 148-165 (415)
396 cd00757 ThiF_MoeB_HesA_family 80.5 3.5 9E-05 19.2 6.3 71 7-91 21-97 (228)
397 TIGR02853 spore_dpaA dipicolin 80.4 3.6 9.1E-05 19.2 5.0 158 834-1072 35-210 (288)
398 PRK06545 prephenate dehydrogen 80.3 2.6 6.7E-05 20.2 3.9 34 8-52 1-36 (357)
399 PRK09423 gldA glycerol dehydro 80.3 3.6 9.1E-05 19.2 9.0 72 8-102 30-103 (366)
400 PRK10537 voltage-gated potassi 80.3 2.6 6.6E-05 20.3 3.8 121 620-787 206-327 (356)
401 cd05294 LDH-like_MDH_nadp A la 80.3 3.6 9.2E-05 19.1 13.8 100 204-328 205-306 (309)
402 pfam08830 DUF1806 Protein of u 80.2 2.2 5.5E-05 20.9 3.5 73 562-643 3-78 (114)
403 PRK05693 short chain dehydroge 80.2 3.6 9.2E-05 19.1 9.7 60 275-360 119-178 (274)
404 pfam00890 FAD_binding_2 FAD bi 80.2 2.7 6.8E-05 20.2 3.9 32 10-52 2-33 (401)
405 PRK09647 RNA polymerase sigma 80.2 3.6 9.2E-05 19.1 6.6 43 527-570 151-193 (222)
406 COG2072 TrkA Predicted flavopr 80.2 3.6 9.2E-05 19.1 4.6 13 640-652 186-198 (443)
407 PRK05720 mtnA methylthioribose 80.1 3.6 9.2E-05 19.1 6.5 19 65-83 31-49 (351)
408 PRK10124 putative UDP-glucose 80.0 3.7 9.3E-05 19.1 10.2 37 617-661 143-179 (464)
409 PRK13304 L-aspartate dehydroge 80.0 3.7 9.3E-05 19.1 7.2 108 8-140 2-113 (265)
410 PRK00676 hemA glutamyl-tRNA re 79.9 2.5 6.3E-05 20.4 3.6 91 541-661 116-206 (338)
411 PRK10867 signal recognition pa 79.8 3.7 9.5E-05 19.0 6.6 77 93-224 115-191 (453)
412 PRK07045 putative monooxygenas 79.6 2.8 7.1E-05 20.0 3.8 35 6-51 4-38 (388)
413 pfam01266 DAO FAD dependent ox 79.5 2.6 6.7E-05 20.2 3.7 32 9-51 1-32 (309)
414 PRK06416 dihydrolipoamide dehy 79.2 3.4 8.7E-05 19.3 4.2 43 482-524 408-451 (462)
415 PRK08274 tricarballylate dehyd 79.2 3.7 9.5E-05 19.0 4.4 37 1-51 1-37 (456)
416 TIGR02247 HAD-1A3-hyp Epoxide 79.1 1.8 4.6E-05 21.5 2.8 56 28-86 108-173 (228)
417 PRK02141 Maf-like protein; Rev 79.1 3.9 9.9E-05 18.9 8.1 32 673-704 133-164 (206)
418 PRK06452 sdhA succinate dehydr 79.1 2.5 6.4E-05 20.4 3.5 30 10-50 8-37 (566)
419 PRK11511 DNA-binding transcrip 79.1 3.9 9.9E-05 18.9 8.2 83 492-578 16-118 (127)
420 PRK00258 aroE shikimate 5-dehy 78.9 3.4 8.8E-05 19.3 4.1 39 616-665 120-159 (275)
421 PRK06249 2-dehydropantoate 2-r 78.8 3.8 9.7E-05 19.0 4.3 35 1-48 1-35 (313)
422 TIGR00274 TIGR00274 glucokinas 78.7 1.9 5E-05 21.3 2.8 36 33-68 145-181 (291)
423 TIGR03315 Se_ygfK putative sel 78.6 3.7 9.6E-05 19.0 4.2 162 486-664 380-572 (1012)
424 PRK06844 consensus 78.6 4 0.0001 18.8 6.3 27 346-372 188-216 (341)
425 PRK12550 shikimate 5-dehydroge 78.5 3.3 8.4E-05 19.5 3.9 37 617-664 121-158 (272)
426 PRK07846 mycothione/glutathion 78.5 3.8 9.6E-05 19.0 4.2 42 482-523 403-446 (453)
427 PRK05772 translation initiatio 78.4 4.1 0.0001 18.7 6.2 40 63-103 38-77 (365)
428 PRK06550 fabG 3-ketoacyl-(acyl 78.3 4.1 0.0001 18.7 5.4 69 8-91 6-77 (237)
429 pfam00148 Oxidored_nitro Nitro 78.1 4.1 0.00011 18.7 7.4 37 55-91 46-83 (398)
430 PRK09853 putative selenate red 78.1 3.2 8.2E-05 19.5 3.8 155 486-663 393-584 (1032)
431 PRK06467 dihydrolipoamide dehy 78.0 4.2 0.00011 18.7 4.3 46 481-526 410-456 (472)
432 PRK09078 sdhA succinate dehydr 77.9 4 0.0001 18.8 4.2 40 1-51 3-45 (598)
433 PRK07818 dihydrolipoamide dehy 77.8 4.2 0.00011 18.6 4.7 44 482-525 413-457 (467)
434 PRK06475 salicylate hydroxylas 77.8 3.4 8.6E-05 19.4 3.8 34 8-52 3-36 (400)
435 COG0373 HemA Glutamyl-tRNA red 77.6 3.4 8.6E-05 19.4 3.7 174 520-755 92-278 (414)
436 PRK10015 hypothetical protein; 77.5 3.4 8.6E-05 19.4 3.7 32 7-49 5-36 (429)
437 pfam02780 Transketolase_C Tran 77.4 4.3 0.00011 18.5 7.9 94 8-124 10-107 (124)
438 COG1377 FlhB Flagellar biosynt 77.4 4.3 0.00011 18.5 5.0 64 1079-1142 229-325 (363)
439 cd00674 LysRS_core_class_I Thi 77.4 4.3 0.00011 18.5 7.4 45 15-65 30-74 (354)
440 PRK05583 ribosomal protein L7A 77.4 4 0.0001 18.8 4.1 60 1081-1143 16-75 (104)
441 PRK00711 D-amino acid dehydrog 77.3 3.9 9.9E-05 18.9 4.0 71 9-91 2-82 (416)
442 PRK06464 phosphoenolpyruvate s 77.3 4.3 0.00011 18.5 5.3 47 306-355 286-332 (794)
443 COG1748 LYS9 Saccharopine dehy 77.2 4.4 0.00011 18.5 7.4 29 701-729 72-100 (389)
444 PRK07538 hypothetical protein; 77.2 4.1 0.0001 18.7 4.1 32 9-51 2-33 (413)
445 PRK09649 RNA polymerase sigma 77.1 4 0.0001 18.8 4.1 49 521-570 118-166 (185)
446 PRK08229 2-dehydropantoate 2-r 77.0 3.4 8.7E-05 19.3 3.7 30 8-48 3-32 (341)
447 PRK07803 sdhA succinate dehydr 77.0 3.1 7.8E-05 19.7 3.4 31 9-50 10-40 (631)
448 PRK10157 putative oxidoreducta 76.8 3.8 9.6E-05 19.0 3.8 34 6-50 4-37 (428)
449 KOG3895 consensus 76.8 1.9 4.8E-05 21.4 2.3 183 713-928 177-365 (488)
450 COG0673 MviM Predicted dehydro 76.6 4.5 0.00011 18.4 6.9 115 8-143 4-121 (342)
451 PRK06481 fumarate reductase fl 76.5 3.9 1E-04 18.9 3.9 32 9-51 62-93 (506)
452 COG0169 AroE Shikimate 5-dehyd 76.4 4.6 0.00012 18.3 4.3 92 1004-1107 99-199 (283)
453 cd06281 PBP1_LacI_like_5 Ligan 76.3 4.6 0.00012 18.3 9.2 44 33-91 21-64 (269)
454 pfam02750 Synapsin_C Synapsin, 76.3 4.6 0.00012 18.3 8.7 133 211-356 45-177 (203)
455 TIGR01790 carotene-cycl lycope 76.2 4.4 0.00011 18.4 4.1 99 10-126 2-120 (419)
456 cd00763 Bacterial_PFK Phosphof 76.2 4.6 0.00012 18.3 5.7 62 8-80 1-62 (317)
457 PRK05875 short chain dehydroge 76.1 4.6 0.00012 18.3 4.1 42 1-52 1-42 (277)
458 cd01968 Nitrogenase_NifE_I Nit 76.1 4.6 0.00012 18.3 8.7 37 55-91 58-95 (410)
459 PRK08294 phenol 2-monooxygenas 75.8 4.7 0.00012 18.2 4.1 51 9-74 34-85 (634)
460 TIGR03466 HpnA hopanoid-associ 75.8 4.7 0.00012 18.2 7.2 69 9-89 2-71 (328)
461 COG0445 GidA Flavin-dependent 75.7 4.2 0.00011 18.6 3.8 110 8-144 5-114 (621)
462 PRK13748 putative mercuric red 75.7 3.7 9.4E-05 19.1 3.5 56 319-390 13-69 (561)
463 cd01744 GATase1_CPSase Small c 75.6 4.8 0.00012 18.2 5.3 15 35-49 14-28 (178)
464 KOG1209 consensus 75.3 4.8 0.00012 18.1 8.2 21 708-728 19-39 (289)
465 pfam01210 NAD_Gly3P_dh_N NAD-d 75.3 4.7 0.00012 18.2 4.0 34 8-52 1-34 (159)
466 cd06348 PBP1_ABC_ligand_bindin 75.2 4.9 0.00012 18.1 10.4 65 645-728 158-225 (344)
467 PRK08958 sdhA succinate dehydr 75.2 4.2 0.00011 18.6 3.7 33 8-51 8-40 (588)
468 PRK12549 shikimate 5-dehydroge 75.2 4.7 0.00012 18.3 3.9 37 616-663 125-162 (284)
469 PRK06349 homoserine dehydrogen 74.9 4.9 0.00013 18.1 9.8 25 364-388 130-154 (432)
470 PRK05321 nicotinate phosphorib 74.8 5 0.00013 18.0 5.1 106 628-753 278-395 (400)
471 PTZ00139 succinate dehydrogena 74.8 4.2 0.00011 18.6 3.6 32 9-51 36-67 (622)
472 PRK08334 translation initiatio 74.4 5.1 0.00013 18.0 6.3 18 65-82 38-55 (356)
473 PRK09310 aroDE bifunctional 3- 74.4 4.9 0.00013 18.1 3.9 36 617-663 331-366 (477)
474 PRK07283 hypothetical protein; 74.2 5.1 0.00013 17.9 4.4 60 1081-1143 17-76 (98)
475 cd01488 Uba3_RUB Ubiquitin act 74.2 4 0.0001 18.8 3.4 111 9-149 1-130 (291)
476 cd06355 PBP1_FmdD_like Peripla 74.2 5.1 0.00013 17.9 9.8 82 617-723 132-214 (348)
477 COG0287 TyrA Prephenate dehydr 73.9 5.2 0.00013 17.9 6.4 34 7-51 3-36 (279)
478 cd01967 Nitrogenase_MoFe_alpha 73.8 5.2 0.00013 17.9 6.8 42 50-91 54-96 (406)
479 cd01486 Apg7 Apg7 is an E1-lik 73.8 5.2 0.00013 17.9 5.9 65 9-86 1-72 (307)
480 pfam03435 Saccharop_dh Sacchar 73.8 5.2 0.00013 17.9 19.7 112 10-144 1-119 (384)
481 cd01749 GATase1_PB Glutamine A 73.6 5.3 0.00014 17.8 4.6 65 32-125 12-82 (183)
482 PRK12528 RNA polymerase sigma 73.5 5.3 0.00014 17.8 6.3 51 521-572 107-157 (167)
483 PTZ00052 thioredoxin reductase 73.3 5.4 0.00014 17.8 3.9 42 482-523 476-518 (541)
484 PRK07714 hypothetical protein; 73.3 4.9 0.00012 18.1 3.7 60 1081-1143 17-76 (100)
485 PRK00912 ribonuclease P protei 72.9 5.5 0.00014 17.7 11.1 84 642-729 22-114 (237)
486 PRK06139 short chain dehydroge 72.7 5.5 0.00014 17.7 10.1 18 33-50 22-39 (324)
487 TIGR00137 gid gid protein; Int 72.4 5.6 0.00014 17.6 3.9 198 8-275 1-235 (444)
488 cd01170 THZ_kinase 4-methyl-5- 72.1 0.86 2.2E-05 24.1 -0.4 62 722-783 27-90 (242)
489 cd01545 PBP1_SalR Ligand-bindi 71.9 5.8 0.00015 17.5 10.3 45 31-89 19-63 (270)
490 PTZ00082 L-lactate dehydrogena 71.7 5.8 0.00015 17.5 7.0 100 204-327 216-317 (322)
491 COG0743 Dxr 1-deoxy-D-xylulose 71.6 5.8 0.00015 17.5 8.5 120 7-145 1-144 (385)
492 cd06317 PBP1_ABC_sugar_binding 71.2 5.9 0.00015 17.4 5.0 38 1064-1101 200-237 (275)
493 PRK06223 malate dehydrogenase; 71.2 5.9 0.00015 17.4 5.8 72 9-91 2-78 (312)
494 PRK07894 consensus 71.0 6 0.00015 17.4 4.1 33 873-905 398-430 (430)
495 pfam01008 IF-2B Initiation fac 71.0 6 0.00015 17.4 8.8 84 618-728 133-216 (281)
496 PRK07094 biotin synthase; Prov 70.9 6 0.00015 17.4 5.0 116 640-783 74-189 (323)
497 PRK08275 putative oxidoreducta 70.9 6 0.00015 17.4 3.9 31 10-51 12-44 (554)
498 PRK06522 2-dehydropantoate 2-r 70.6 6 0.00015 17.4 3.6 32 9-51 2-33 (307)
499 PRK02615 thiamine-phosphate py 70.6 4.1 0.0001 18.7 2.8 105 623-747 234-338 (345)
500 COG0647 NagD Predicted sugar p 70.3 6.2 0.00016 17.3 4.3 37 6-51 14-50 (269)
No 1
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=0 Score=3698.44 Aligned_cols=1052 Identities=56% Similarity=0.938 Sum_probs=1021.9
Q ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHH
Q ss_conf 77665569999767754205054666888999999998797899974876501078451310043379999999999862
Q gi|254780439|r 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKE 81 (1162)
Q Consensus 2 P~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E 81 (1162)
|||+|||||||||||||+|||||||||||||||||||||||+||||||||||||||+.+||++||||||+|+|++|||||
T Consensus 1 p~r~~i~kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKE 80 (1089)
T TIGR01369 1 PKRTDIKKVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80 (1089)
T ss_pred CCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 98888878999666731131202302478999999876495799975884723388668660025254588886665316
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89889975887026888899887596288287571499899986058899999999878988862000234433333233
Q gi|254780439|r 82 RPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKL 161 (1162)
Q Consensus 82 ~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~ 161 (1162)
||||||||||||||||||++|+++|+|++|||++|||+.++|.++|||++|+++|++||+|||+|..+
T Consensus 81 RPDgiL~t~GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~------------ 148 (1089)
T TIGR01369 81 RPDGILPTLGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIV------------ 148 (1089)
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC------------
T ss_conf 86600025760357777886620685145291785234243520202799999999738998811002------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 33333444444443333222111111233444444455444899999999987199699941326786645111699999
Q gi|254780439|r 162 HEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241 (1162)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL 241 (1162)
||++||+++|++|||||||||||||||+|+|||+|++||
T Consensus 149 -----------------------------------------~~~eEA~~~a~~~GyPviVRpAftLGG~GgGiA~n~eEL 187 (1089)
T TIGR01369 149 -----------------------------------------HSVEEALKAAKEIGYPVIVRPAFTLGGTGGGIASNEEEL 187 (1089)
T ss_pred -----------------------------------------CCHHHHHHHHHHCCCCEEECCCHHCCCCCCCEECCHHHH
T ss_conf -----------------------------------------788999999962689689810032388998522577899
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99999899857998279866449978999999972899889996300000010000101343373228988999999999
Q gi|254780439|r 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAA 321 (1162)
Q Consensus 242 ~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a 321 (1162)
++.+++||++||++||||||||.||||||||||||.+||||+||||||+|||||||||||||||||||||+|||+||++|
T Consensus 188 ~~~~~~aL~~SpI~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNmEN~DPmGVHTGdSIVVAPSQTLtD~EYQ~LR~~s 267 (1089)
T TIGR01369 188 KEIVERALSASPINQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDAS 267 (1089)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 99999886308885575011003317889889862687889997454768984570783365076368807899999999
Q ss_pred HHHHHHHCCCCCC-CEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999871834576-468999955898499985044431035788876346147677764134461013577567777666
Q gi|254780439|r 322 IAVLKEIGVESGG-ANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPAS 400 (1162)
Q Consensus 322 ~kI~r~lgi~vG~-~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~ 400 (1162)
+||+|+||| +|+ |||||||||++++|||||||||+|||||||||||||||||||||||+||+||||+||+|+ +|+||
T Consensus 268 ikIIR~lGi-~GgGCNvQFAL~P~s~~Y~vIEvNPRvSRSSALASKATGYPiAkvAAKLAvGY~LdEl~N~vT~-~T~A~ 345 (1089)
T TIGR01369 268 IKIIRELGI-VGGGCNVQFALDPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKNPVTK-TTPAS 345 (1089)
T ss_pred HHHHHHCCC-EECCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC
T ss_conf 999987391-2167421321507897069998678821358987665166289999998468878765688888-53541
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 57767768985442012114776666677310010022226768999998997503787676655766766458989999
Q gi|254780439|r 401 FEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 (1162)
Q Consensus 401 ~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l~ 480 (1162)
|||||||||||||||||+||+++|++|||||||||||||||||||||||||+||||.+..||+.. .+ .....+++.++
T Consensus 346 FEPSLDYvVvKIPRW~f~KF~~v~r~LGt~MKSvGEVMAIGRtFEEALQKA~Rsle~~~~Gf~~~-~~-~~~~~~~~~~~ 423 (1089)
T TIGR01369 346 FEPSLDYVVVKIPRWDFDKFEGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGLLGFEFD-LP-DKEVESDEDLE 423 (1089)
T ss_pred CCCCCCEEEECCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC-CC-CCCCCCHHHHH
T ss_conf 04674808860678872210578854152101577773467138999989887653784113644-56-20003578999
Q ss_pred HHHCCCCHHH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCC----CHHHHHHHHHHCCC
Q ss_conf 9760798248---99999999738978899877188989999999999999987530--376----02799998653379
Q gi|254780439|r 481 SAISIPCPDR---LRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREH--GLP----KDFQNLQAIKAMGF 551 (1162)
Q Consensus 481 ~~L~~p~~~R---l~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~--~~~----~~~~~l~~aK~~GF 551 (1162)
+.|++|+|+| ||+|++|||||+|||+|||+||||+|||+||++||++|++|... .++ .+.|+|++||++||
T Consensus 424 ~~l~~p~d~RPYW~f~i~~Al~~G~~V~~~~ElT~ID~wFL~k~~~iV~~e~~l~~~~n~~~~I~~~~~e~L~~aK~lGF 503 (1089)
T TIGR01369 424 EALKKPTDRRPYWIFAIAEALRRGVSVEEIHELTKIDRWFLHKIKNIVELEKELEELKNKLTGIEELDKELLRKAKKLGF 503 (1089)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 99728698876189989999875886899986527888899999999999999875301244533489889999864188
Q ss_pred CHHHHHHHHCCCHHH------HHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC--CEEEE
Q ss_conf 988999885899999------9988986398479986214324436658558972067766655322356777--41899
Q gi|254780439|r 552 SDARLSILSGIPCNE------IRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDR--KKIVI 623 (1162)
Q Consensus 552 SD~~IA~l~~~~e~~------Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~--kkviV 623 (1162)
||+|||++|++++.+ ||++|+++||+|+||+||||||||||+||||||||++|. +|...+++ |||||
T Consensus 504 SD~~iA~~~~~~~~~~~~~~~vR~~R~~~gi~Pv~K~vDTcAAEF~A~TpY~YSTY~~e~-----~d~~~~~~~Kk~~lv 578 (1089)
T TIGR01369 504 SDAQIARLVNVTEAESIEELEVRKLRKELGIIPVYKRVDTCAAEFEAKTPYLYSTYEGER-----DDVEFTEKEKKKVLV 578 (1089)
T ss_pred CHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEE
T ss_conf 878999986897444200689999998469747787752321202015688525776665-----676666577856899
Q ss_pred ECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 72763020147665318999999999659806996068652112324586379841678899999987485678227998
Q gi|254780439|r 624 LGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIV 703 (1162)
Q Consensus 624 lGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~ 703 (1162)
|||||||||||||||||||||+++||++|||||||||||||||||||+||||||||||+|+||||+++|||+| |||
T Consensus 579 lGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN~NPETVSTDyD~sDrLYFEplt~E~Vm~I~e~E~~~G----VIV 654 (1089)
T TIGR01369 579 LGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEG----VIV 654 (1089)
T ss_pred ECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEHEEECCCCE----EEE
T ss_conf 8784514066312056789999999872995999977899743666651011587635031001100058667----999
Q ss_pred ECCCHHHHHHHHHHHHCC-CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 445124668988888759-8386127520331028678999888709866854211215665556553697167513444
Q gi|254780439|r 704 QFGGQTPLKLSKILEKNQ-IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYV 782 (1162)
Q Consensus 704 q~gGqt~~~la~~L~~~g-v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyV 782 (1162)
|||||||+|||+.|++.| ++|||||+++||.||||+||+++|++||||||+|.+|+|.+||.++|++||||||||||||
T Consensus 655 q~GGQtp~nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYPvlvRPSYV 734 (1089)
T TIGR01369 655 QFGGQTPLNLAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFASEIGYPVLVRPSYV 734 (1089)
T ss_pred ECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 74873267899999970893173688578751318679999997158798988527287999999854699289816830
Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 45654125548999999999752101322111122333333334557777456702201201001010230798499985
Q gi|254780439|r 783 LGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGI 862 (1162)
Q Consensus 783 LGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gi 862 (1162)
||||||+||||++||.+|+++|+. +|++|||||||||++|+|+|||+||||++|+|+||
T Consensus 735 LgG~aM~iv~~~eeL~~yl~~a~~---------------------~S~~~PVlidky~e~A~E~dVD~v~Dg~~v~i~gI 793 (1089)
T TIGR01369 735 LGGRAMEIVYNEEELARYLEEAVE---------------------VSPEHPVLIDKYLEDAVEIDVDAVSDGEEVLIPGI 793 (1089)
T ss_pred CCCCCHHEECCHHHHHHHHHHHHH---------------------HCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEH
T ss_conf 033621002678899999999997---------------------20899769888528888999989972884899623
Q ss_pred ECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 20110215245762798168668999999999999999874133576247885128-85999852444456304567773
Q gi|254780439|r 863 IEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD-GKIYILEVNPRASRTVPFIAKAI 941 (1162)
Q Consensus 863 mEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd-~~iYVIEvNpRaSRtvPfvSKat 941 (1162)
|||||+||||||||+|++|||+|+.++.++|+++|.+||++|+|+|||||||+++| +++|||||||||||||||+||||
T Consensus 794 ~EHiE~AGVHSGDs~~~~Pp~~L~~~~~~~i~~~~~~iA~~L~v~Gl~NiQf~~~~E~~~yVIE~NpRASRtVPFvSKa~ 873 (1089)
T TIGR01369 794 MEHIEEAGVHSGDSTCVLPPQTLSEDIVKRIKDIVRKIAKELNVKGLFNIQFVVKDEGEVYVIEVNPRASRTVPFVSKAT 873 (1089)
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEC
T ss_conf 12342136761305311769777889999999999999987066072224555616996799997174206654132103
Q ss_pred CCCHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf 988999999998597210024--666677776668738997203883445999867077563101377741999999999
Q gi|254780439|r 942 GFPVAKVAARIIAGESLDASI--AAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAK 1019 (1162)
Q Consensus 942 G~pl~~iAt~v~lG~~L~~~~--~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~K 1019 (1162)
|+|||++|+++|+|++|.+.+ ++..+. +..+||+||+|||||+||+|+||.|||||||||||||||+|+++||+|
T Consensus 874 Gipl~~~A~~~~~G~~l~~~~~~~gv~~~---~~~~~vavK~~vFSF~kL~g~Dp~LGpEMkSTGEvmg~g~d~~~A~~K 950 (1089)
T TIGR01369 874 GIPLAKLAVRVMLGKKLEELGKDLGVGKE---KESKYVAVKVPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLEEAFLK 950 (1089)
T ss_pred CCCHHHHHHHHHHCCCCHHCCCCCCCCCC---CCCCEEEEEEEECCCHHHCCCCEEECCCCCCCCEEEEECCCHHHHHHH
T ss_conf 78879999999708820102754011232---688727996423771221488711177555132256412788999999
Q ss_pred HHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCC--------CCHH
Q ss_conf 99983887988725999964412899999999999889899993888999998798156975056878--------1078
Q gi|254780439|r 1020 SQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGR--------PHIE 1091 (1162)
Q Consensus 1020 a~~a~g~~lP~~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~--------~~i~ 1091 (1162)
||+++++.+|++|++|++++|+||++++++|++|.++||+||||.||++||.++||+++.|.|++|++ |+++
T Consensus 951 a~~~~~~~~p~kg~~~~~~~d~dk~~~~~~a~~L~~~G~~~yat~gT~~~L~e~gi~~~~v~~~~e~~~~~~C~~~p~~~ 1030 (1089)
T TIGR01369 951 AMLSSGNRIPKKGSVLLSVRDKDKEELLDLAKKLAEKGYKIYATEGTAKFLEEAGIKAEVVLKVSEGREDDDCEAQPNIL 1030 (1089)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHEEEECCCCCCCCCCCCHHHH
T ss_conf 99981870578877999803443457999999998637378850202676765187633200003788788888871589
Q ss_pred HHHHCCCEEEEEECCC-CCC------CCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 8986798549996789-985------231108999999970997994599999999999
Q gi|254780439|r 1092 DAISNRQVHLVINTTE-GKK------AIEDSKSLRRATLIRKIPYYTTIAGADAVFQAI 1143 (1162)
Q Consensus 1092 d~i~~~~i~lVINt~~-~~~------~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al 1143 (1162)
|+|++++|+||||+++ +++ ..++||.|||.|++++||+||++++|+++++||
T Consensus 1031 ~~~~~~~~~~vIN~~~~~~~~~~~~~~~~~gy~iRR~A~~~~vp~~t~~~~~~~~~~al 1089 (1089)
T TIGR01369 1031 ELIKNGEIELVINLTSKGKEGVLLRETATDGYKIRREAVDYGVPLITTLETAEAFLEAL 1089 (1089)
T ss_pred HHHHHCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
T ss_conf 99970880699965788866312202454458999999964997786568999999809
No 2
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=3218.14 Aligned_cols=1066 Identities=50% Similarity=0.840 Sum_probs=1041.3
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 97766556999976775420505466688899999999879789997487650107845131004337999999999986
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEK 80 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~ 80 (1162)
||||+|||||||||||||+|||||||||||+|||+||||+||+||||||||||||||+++||++||||||+++|++||++
T Consensus 1 MPkr~dikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~ 80 (1068)
T PRK12815 1 MPKRTDIKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRR 80 (1068)
T ss_pred CCCCCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 98867788899989881531234465656999999999869989998898326208987444378858989999999997
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999987898886200023443333323
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRK 160 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~ 160 (1162)
||||||+|+|||||||||+++|.++|||++|||++|||++++|+++|||++|+++|+++|+|+|+|++++
T Consensus 81 E~Pd~il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~---------- 150 (1068)
T PRK12815 81 EKPDALLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVD---------- 150 (1068)
T ss_pred HCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCC----------
T ss_conf 4999898677784799999999975977865964967999999864599999999997699999705219----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 33333344444444333322211111123344444445544489999999998719969994132678664511169999
Q gi|254780439|r 161 LHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 (1162)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~ee 240 (1162)
|++||+++|++|||||||||||+|||+||+||+|++|
T Consensus 151 -------------------------------------------s~~ea~~~a~~ig~PvivRps~~lGg~g~~i~~n~~e 187 (1068)
T PRK12815 151 -------------------------------------------SEEEALRFAEKIGFPIIVRPAYTLGGDGGGIAENEEE 187 (1068)
T ss_pred -------------------------------------------CHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHH
T ss_conf -------------------------------------------9999999998669989998361066896504459999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999989985799827986644997899999997289988999630000001000010134337322898899999999
Q gi|254780439|r 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNA 320 (1162)
Q Consensus 241 L~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~ 320 (1162)
|+++++++++.||.+||||||||.||||||||||||++|||+++|+|||+||||||||||++|+|+|||+|++||+||++
T Consensus 188 L~~~~~~~~~~S~~~~vlie~sl~gwkEie~ev~RD~~~n~i~vc~mEnidP~GIHTGDSi~vaP~qTL~d~e~q~lR~~ 267 (1068)
T PRK12815 188 LEQLARQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNDNCVTVCNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRSA 267 (1068)
T ss_pred HHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 99999999963999857865011797699999999889897998541235445435677453457812699999999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999871834576468999955898499985044431035788876346147677764134461013577567777666
Q gi|254780439|r 321 AIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPAS 400 (1162)
Q Consensus 321 a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~ 400 (1162)
|+||+|+||| +|+||||||++|++++|||||||||+|||||||||||||||||||||||+||+|+||+||+|+. ++|+
T Consensus 268 a~~I~~~lgv-~G~~NiQFAv~p~~~~~~VIEvNPR~SRssalaSKATGyPiAkvaaklalG~~L~ei~n~iTg~-t~A~ 345 (1068)
T PRK12815 268 SLKIIRALGV-VGGCNIQFALDPRSKQYYVIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLDEIKNPLTGL-TYAS 345 (1068)
T ss_pred HHHHHHHCCE-ECCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCCC-CCCC
T ss_conf 9999997280-1010579988699982899964786220247888750884899999986388777706641377-3033
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 57767768985442012114776666677310010022226768999998997503787676655766766458989999
Q gi|254780439|r 401 FEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 (1162)
Q Consensus 401 ~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l~ 480 (1162)
|||++||||||+|||||+||+++|++|||+||||||||||||||+||||||+||||.+..||.. +......++++|+
T Consensus 346 fEP~lDyvvvK~P~~~F~kf~~~d~~Lgt~Mks~Gevm~igr~f~eA~~KAlrsle~~~~g~~~---~~~~~~~~~~~l~ 422 (1068)
T PRK12815 346 FEPTLDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRNGLSL---PELESGKSEEELL 422 (1068)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCHHHHH
T ss_conf 3775776999740566444678875447512333222003002899999999863357677677---6545567899999
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 97607982489999999973897889987718898999999999999998753037602799998653379988999885
Q gi|254780439|r 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSILS 560 (1162)
Q Consensus 481 ~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~ 560 (1162)
++|++|+|+|||+|++|||||||+++||++|+||||||+||++|+++|+++++.. ..+.++|++||++||||+|||++|
T Consensus 423 ~~L~~p~~~Rl~~i~eAlr~G~sv~~i~~lT~ID~wFL~ki~~iv~~e~~l~~~~-~~~~~~l~~aK~~GFSD~~Ia~l~ 501 (1068)
T PRK12815 423 QDLRTPDDRRLFALLEALRRGISIEEIHELTKIDPFFLQKFRHIVALEKELAEAG-LLSADLLRKAKEKGFSDRLIAELT 501 (1068)
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9855899428999999998599999999887867999999999999999997369-999999999998499999999770
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHH
Q ss_conf 89999999889863984799862143244366585589720677666553223567774189972763020147665318
Q gi|254780439|r 561 GIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYC 640 (1162)
Q Consensus 561 ~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~ 640 (1162)
++++++||++|++++|+|+||+||||||||+|.||||||||++|++. ..++++||||||||||||||||||||||
T Consensus 502 ~~~e~~vr~~R~~~~i~P~yK~VDTcA~EF~a~T~Y~YsTY~~e~e~-----~~~~~~~kvliLGsGP~RIGqgiEFDYc 576 (1068)
T PRK12815 502 GVTEEDVRELRKKLGIRPSFKMVDTCAAEFEAKTPYYYSTYFGESEA-----KIPSEKKKVLILGSGPIRIGQGIEFDYM 576 (1068)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCC-----CCCCCCCEEEEECCCCCEECCCCCCHHH
T ss_conf 99999999999976995589842774555467876377634786777-----6888983499956787142244240025
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 99999999965980699606865211232458637984167889999998748567822799844512466898888875
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~ 720 (1162)
||||+++||++||+||||||||||||||||+||||||||||+|+|++|+++|+|+| |++|||||||+|||..|+++
T Consensus 577 ~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~g----VivqfGGQt~lnla~~L~~~ 652 (1068)
T PRK12815 577 CVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKG----VIVQFGGQTAINLAKPLEEA 652 (1068)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCE----EEEECCCCCHHHHHHHHHHC
T ss_conf 89999999968974899627843123674557735753687999999999858997----99964882367999999976
Q ss_pred CCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHH
Q ss_conf 98386127520331028678999888709866854211215665556553697167513444456541255489999999
Q gi|254780439|r 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDY 800 (1162)
Q Consensus 721 gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~y 800 (1162)
|++|||||+++||.||||++|+++|+++||+||+|.+++|.+||+++|+++|||||||||||||||+|.||||+++|++|
T Consensus 653 gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvRPSyvLgG~~m~iv~~~~eL~~y 732 (1068)
T PRK12815 653 GLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAY 732 (1068)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99498278688642413999999999738999996354566799999986499778424433577423897599999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEE
Q ss_conf 99752101322111122333333334557777456702201201001010230798499985201102152457627981
Q gi|254780439|r 801 LLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL 880 (1162)
Q Consensus 801 l~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~ 880 (1162)
+.++ +++++||||||||+ |+|+|||++|||++++|+|||||||+||||||||+||+
T Consensus 733 ~~~a-----------------------~~~~~pvlIdkfl~-g~E~evDai~Dg~~v~I~gImEHIE~AGVHSGDS~~v~ 788 (1068)
T PRK12815 733 LEEN-----------------------VQQLYPILIDQFID-GKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVL 788 (1068)
T ss_pred HHHH-----------------------CCCCCCEEEEECCC-CCEEEEEEEECCCCEEEEEEEECHHHCCCCCCCCEEEE
T ss_conf 9851-----------------------57888556230005-40468899964995599996421131466568854883
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 68668999999999999999874133576247885128859998524444563045677739889999999985972100
Q gi|254780439|r 881 PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 (1162)
Q Consensus 881 PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~ 960 (1162)
|||+|+++++++|+++|.+||++|+|+|+|||||+++|+++||||||||||||+||+||+||+||+++|||+|+|++|++
T Consensus 789 Pp~~Ls~~~~~~i~~~t~kia~~L~v~Gl~NiQfavk~~~vyVIEvNpRASRTvPFvSKatG~pl~~iAtkvmlG~~L~~ 868 (1068)
T PRK12815 789 PPQSLSPEQQAKIRDQAIKIAKKLGFRGIMNIQFLLAGDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAE 868 (1068)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCEEECCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHH
T ss_conf 89878999999999999999964835451269999979989999961875543266787329889999999984997566
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 24666677776668738997203883445999867077563101377741999999999999838879887259999644
Q gi|254780439|r 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRD 1040 (1162)
Q Consensus 961 ~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv~d 1040 (1162)
++++...+| ..+|++||+|||||+||+|+|+.|||||||||||||+|++|++||+|||+|+|+++|++|++|+|++|
T Consensus 869 l~~~~~~~p---~~~~~~VK~pvFsf~k~~g~d~~LGpEMkSTGEVmgig~~~~eA~~Ka~~aag~~lP~~G~vfiSv~d 945 (1068)
T PRK12815 869 LGYPNELWP---GSNFIHVKMPVFSFLRYPGVDNTLGPEMKSTGEVMGIDKDLESALYKGYAASDLHIPTYGTIFISVRD 945 (1068)
T ss_pred CCCCCCCCC---CCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 288655577---88828998354874443899987788842232315624999999999999669988989889999610
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 12899999999999889899993888999998798156975056878107889867985499967899852311089999
Q gi|254780439|r 1041 ADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRR 1120 (1162)
Q Consensus 1041 ~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr 1120 (1162)
+||.+++++|++|++|||+||||+|||+||+++||+|+.|+|++||+||++|+|++++|+||||||.++++.+|||.|||
T Consensus 946 ~DK~~~~~~a~~l~~lGf~i~AT~GTa~~L~~~GI~~~~V~Kv~eg~p~i~d~i~~~~i~lViNt~~g~~~~~D~~~IRr 1025 (1068)
T PRK12815 946 EDKEAVAELARRFEQLGFKLLATEGTANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIKIRD 1025 (1068)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 01789999999999879989986589999997798369971367898129999867985799979999876654399999
Q ss_pred HHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCEEECHHHCC
Q ss_conf 99970997994599999999999961058971777455317
Q gi|254780439|r 1121 ATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSYRY 1161 (1162)
Q Consensus 1121 ~Ai~~~ip~~T~~~~a~a~~~al~~~~~~~~~v~slqey~~ 1161 (1162)
+|++++|||+||+++|+++++||++++.++++|+||||||+
T Consensus 1026 ~Av~~~IP~~Ttl~~A~a~v~al~~~~~~~~~v~sLqeyh~ 1066 (1068)
T PRK12815 1026 EALTTHIPVFTSLETAQAFLDVLESLALGTQPIRSLQEYHK 1066 (1068)
T ss_pred HHHHHCCCEEECHHHHHHHHHHHHHHHCCCCCEEEHHHHHC
T ss_conf 99982998892799999999999986369987053698742
No 3
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=3201.98 Aligned_cols=1061 Identities=67% Similarity=1.066 Sum_probs=1038.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 97766556999976775420505466688899999999879789997487650107845131004337999999999986
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEK 80 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~ 80 (1162)
||||+|||||||||||||+||||+||||||+|||+||||+||+||||||||||||||+++||++||||||+|+|++||++
T Consensus 1 MP~~~~ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~ 80 (1063)
T PRK05294 1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEK 80 (1063)
T ss_pred CCCCCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99877878899989882510372332656999999999869989998798544107877664378727989999999997
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999987898886200023443333323
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRK 160 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~ 160 (1162)
||||||+|+|||||||||+++|.++|||++|||++|||++++|+++|||++|+++|+++|+|+|+|++++
T Consensus 81 E~Pd~il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~---------- 150 (1063)
T PRK05294 81 ERPDAILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAH---------- 150 (1063)
T ss_pred HCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCC----------
T ss_conf 5999788667780599999999975967764972756999999977789999999997699999725309----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 33333344444444333322211111123344444445544489999999998719969994132678664511169999
Q gi|254780439|r 161 LHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 (1162)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~ee 240 (1162)
|++||+++|+++||||||||||+|||+||+||+|++|
T Consensus 151 -------------------------------------------s~~ea~~~a~~igyPvivRps~~LGG~g~~i~~n~~e 187 (1063)
T PRK05294 151 -------------------------------------------TMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNREE 187 (1063)
T ss_pred -------------------------------------------CHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHH
T ss_conf -------------------------------------------9999999998659988998442167876404349999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999989985799827986644997899999997289988999630000001000010134337322898899999999
Q gi|254780439|r 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNA 320 (1162)
Q Consensus 241 L~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~ 320 (1162)
|++++++|+++||.+||||||||.||||||||||||++|||+++|+|||+||||||||||++|+|+|||+|++||+||++
T Consensus 188 L~~~~~~~~~~S~~~qvLie~sl~gwkEie~ev~rD~~~n~i~v~~mEnidp~GIHtGDSi~vaP~qTL~d~e~q~lR~~ 267 (1063)
T PRK05294 188 LEEIVERGLDLSPTTEVLIEESLLGWKEYEMEVMRDKADNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDA 267 (1063)
T ss_pred HHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 99999999961999868966111798899999998189998999541135456456667253568865898999999999
Q ss_pred HHHHHHHHCCCC-CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998718345-7646899995589849998504443103578887634614767776413446101357756777766
Q gi|254780439|r 321 AIAVLKEIGVES-GGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPA 399 (1162)
Q Consensus 321 a~kI~r~lgi~v-G~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a 399 (1162)
|+||+|+||| + |+||||||+||++++|||||||||+||||||||||||||||+||||||+||+|+||+||+|+. |+|
T Consensus 268 a~kI~~~L~i-v~G~~NiQfA~~p~~~~~~VIEvNPR~SRssalaSKaTGyPiA~vaaklalG~~L~ei~n~vT~~-t~A 345 (1063)
T PRK05294 268 SIAILREIGV-ETGGSNVQFAVNPKDGRYVVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIKNDITGK-TPA 345 (1063)
T ss_pred HHHHHHHCCC-CCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCC-CCC
T ss_conf 9999998295-73644799987489984899963775001068888873887899999987179757836764466-314
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 65776776898544201211477666667731001002222676899999899750378767665576676645898999
Q gi|254780439|r 400 SFEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNAL 479 (1162)
Q Consensus 400 ~~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l 479 (1162)
+|||+|||||||+|||||+||+++|+.|||+||||||||||||||+||||||+||||.+..||... ...++++|
T Consensus 346 ~fEP~ldyv~vK~p~~~f~kf~~~~~~Lg~~mks~Gevm~igr~feea~~KAirSle~~~~gl~~~------~~~~~eel 419 (1063)
T PRK05294 346 SFEPSIDYVVTKIPRFAFEKFPGADRRLTTQMKSVGEVMAIGRTFEESLQKALRSLEIGLTGLDEK------EDLALEEI 419 (1063)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC------CCCCHHHH
T ss_conf 447756659997047771003585443243011341022222328999999998442586677777------77899999
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9976079824899999999738978899877188989999999999999987530376-027999986533799889998
Q gi|254780439|r 480 RSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLP-KDFQNLQAIKAMGFSDARLSI 558 (1162)
Q Consensus 480 ~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~-~~~~~l~~aK~~GFSD~~IA~ 558 (1162)
+++|+||+|+|||+|++|||||||+++||++|+||+|||+||++|+++|+++++.+.+ .+.++|++||++||||+|||+
T Consensus 420 ~~~L~~p~~~Rl~~i~eAlrrG~sveeI~elT~ID~wFL~ki~~Iv~~e~~l~~~~~~~l~~~~L~~aK~~GFSD~~IA~ 499 (1063)
T PRK05294 420 RRELKKPTPERIFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKEGGLPGLDAELLRELKRLGFSDARIAK 499 (1063)
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 99863799359999999998599999999987876999999999999999998489887999999999980998599998
Q ss_pred HHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCC
Q ss_conf 85899999998898639847998621432443665855897206776665532235677741899727630201476653
Q gi|254780439|r 559 LSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFD 638 (1162)
Q Consensus 559 l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFD 638 (1162)
+|++++++||++|++++|+|+||+||||||||+|.||||||||+.+ +|+.+++++|||||||||||||||||||
T Consensus 500 l~~~~~~~Vr~~R~~~~I~P~yK~VDTcAgEF~a~T~Y~YSTY~~e------~e~~~~~~~kvlvlGsGp~rIGqgiEFD 573 (1063)
T PRK05294 500 LLGVTEDEVRKLRKELGIHPVYKRVDTCAAEFEADTPYMYSTYEEE------CESNPSDRKKVMILGGGPNRIGQGIEFD 573 (1063)
T ss_pred HHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCC------CCCCCCCCCCEEEECCCCCCCCCCCCCH
T ss_conf 8499999999999987995389841563234566787267645777------7767778863799657773204442300
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 18999999999659806996068652112324586379841678899999987485678227998445124668988888
Q gi|254780439|r 639 YCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILE 718 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~ 718 (1162)
||||||+++||++||+||||||||||||||||+||||||||||+|+|++|+++|+|+| |++|||||||+||+..|+
T Consensus 574 Y~~v~a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E~p~g----vi~qfGGQt~~nla~~L~ 649 (1063)
T PRK05294 574 YCCVHAALALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG----VIVQFGGQTPLKLAKALE 649 (1063)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCE----EEEECCCCCHHHHHHHHH
T ss_conf 6799999999965981589537811111565667614543688999999999758987----999738836789999999
Q ss_pred HCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHH
Q ss_conf 75983861275203310286789998887098668542112156655565536971675134444565412554899999
Q gi|254780439|r 719 KNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQ 798 (1162)
Q Consensus 719 ~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~ 798 (1162)
++|++|||||+++||.||||++|+++|+++||+||+|.+++|.+||+++|+++||||||||||||||++|+||||++||+
T Consensus 650 ~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyPvlvRPSyVLGG~~M~iv~~~~eL~ 729 (1063)
T PRK05294 650 AAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEEIGYPVLVRPSYVLGGRAMEIVYDEEELE 729 (1063)
T ss_pred HCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHH
T ss_conf 87994777887887878758889999986599999970766899999999864986684343102577147856999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEE
Q ss_conf 99997521013221111223333333345577774567022012010010102307984999852011021524576279
Q gi|254780439|r 799 DYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSAC 878 (1162)
Q Consensus 799 ~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~ 878 (1162)
+|+.+|+ .+|++|||||||||++|+|+|||++|||++++|+|||||||+||||||||+|
T Consensus 730 ~yl~~a~---------------------~vs~~~pvlIdkfl~ga~E~eVDai~Dg~~v~I~gImEHIE~AGVHSGDS~~ 788 (1063)
T PRK05294 730 RYMREAV---------------------KVSPDHPVLIDRFLEDAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSAC 788 (1063)
T ss_pred HHHHHHH---------------------HHCCCCCEEEEHHHHHCHHHHHHEEECCCEEEEEEEEEECCCCCCCCCCCEE
T ss_conf 9999998---------------------6389997786354320245443023148848999987200145756678428
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 81686689999999999999998741335762478851288599985244445630456777398899999999859721
Q gi|254780439|r 879 SLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESL 958 (1162)
Q Consensus 879 v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L 958 (1162)
|+|||+|+++++++|+++|.+||++|+|+|+|||||+++|+++||||||||||||+||+||+||+||+++||++|+|++|
T Consensus 789 V~Pp~~Ls~~~~~~i~~~t~~ia~~l~v~G~~NiQf~vk~~~vyVIE~NpRaSRtvPfvSKatg~pl~~iAtk~~lG~~l 868 (1063)
T PRK05294 789 SLPPYTLSEEIIDEIREQTKKLALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKL 868 (1063)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCH
T ss_conf 81685589999999999999999855666642033554098389999447444530445764199799999999829973
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 00246666777766687389972038834459998670775631013777419999999999998388798872599996
Q gi|254780439|r 959 DASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSV 1038 (1162)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv 1038 (1162)
+++++.... .++||+||+|||||+||+|+|+.|||||||||||||+|++|++||+|||+|+|+++|++|++|+|+
T Consensus 869 ~~l~~~~~~-----~~~~v~VK~pvFsf~k~~g~d~~LGpEMkSTGEVmg~g~~~~eAl~Ka~~aag~~iP~~G~v~iSv 943 (1063)
T PRK05294 869 AELGYTKEI-----IPPHVSVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNRLPTSGTVLVSV 943 (1063)
T ss_pred HHCCCCCCC-----CCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 442788778-----888289975648743349999887877243434157349999999999986699889888799994
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 44128999999999998898999938889999987981569750568781078898679854999678998523110899
Q gi|254780439|r 1039 RDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSL 1118 (1162)
Q Consensus 1039 ~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~~~dg~~i 1118 (1162)
+|+||.+++++|++|.+|||+||||+|||+||+++||+++.|+|++|++||++|+|++++|+||||||.++++.+|||.|
T Consensus 944 ~d~dK~~~~~~a~~l~~lGf~i~AT~GTa~~L~~~GI~~~~V~Kv~e~~p~i~d~i~~~~I~lVINt~~~~~~~~dg~~I 1023 (1063)
T PRK05294 944 RDRDKEEVVELAKRLLELGFKILATEGTAKFLEEAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPEGRQAIRDGFSI 1023 (1063)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 24257999999999997699899841789999976991599646578992599999769826999799998777762999
Q ss_pred HHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCEEECHHHC
Q ss_conf 999997099799459999999999996105897177745531
Q gi|254780439|r 1119 RRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSYR 1160 (1162)
Q Consensus 1119 Rr~Ai~~~ip~~T~~~~a~a~~~al~~~~~~~~~v~slqey~ 1160 (1162)
||+|++++|||||++++|+++++||++++ ++++++|||||
T Consensus 1024 RR~Av~~~IP~~Tsl~~A~a~v~al~~~~--~~~v~~lqey~ 1063 (1063)
T PRK05294 1024 RRAALEYKVPYITTLAGARAAAEAIEALK--ELEVRSLQEYH 1063 (1063)
T ss_pred HHHHHHHCCCEEECHHHHHHHHHHHHHHH--CCCCEEHHHCC
T ss_conf 99999709998967999999999999721--68830555409
No 4
>KOG0370 consensus
Probab=100.00 E-value=0 Score=2514.38 Aligned_cols=1032 Identities=41% Similarity=0.679 Sum_probs=988.2
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCC
Q ss_conf 66556999976775420505466688899999999879789997487650107845131004337999999999986289
Q gi|254780439|r 4 RQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 4 ~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~p 83 (1162)
+...+||||+|||...||||+||||||+||+|||||+|++|||||||+|||||+..+||++||.|+|++++.++|+.|+|
T Consensus 374 ~~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erP 453 (1435)
T KOG0370 374 RVEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERP 453 (1435)
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf 22351799981587332124035540788987655326179997896010002555212899950587999999886187
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898886200023443333323333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHE 163 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~ 163 (1162)
|||+.+|||||||||..+|.+.|++++|+++.|||+.++|...|||++|.+.|.++++++.+|..+
T Consensus 454 d~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~-------------- 519 (1435)
T KOG0370 454 DGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAV-------------- 519 (1435)
T ss_pred CEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHH--------------
T ss_conf 737884277654456435300210000341543787552123142788999987631505625667--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 33344444444333322211111123344444445544489999999998719969994132678664511169999999
Q gi|254780439|r 164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLE 243 (1162)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~ 243 (1162)
.++++|+++|+++|||||||++|.|||.|+|++.|++||..
T Consensus 520 ---------------------------------------~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~ 560 (1435)
T KOG0370 520 ---------------------------------------STIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQD 560 (1435)
T ss_pred ---------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf ---------------------------------------67999998888628289999999853766433444899999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99989985799827986644997899999997289988999630000001000010134337322898899999999999
Q gi|254780439|r 244 IVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIA 323 (1162)
Q Consensus 244 ~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~k 323 (1162)
.+..+++.+| |+|||||+.||||+||||+||..|||+.+|+|||+||+|||||||++|||+|||+|++||+||.+|+|
T Consensus 561 l~~~a~a~s~--QilvekSlkGwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaik 638 (1435)
T KOG0370 561 LAAQALALSP--QILVEKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIK 638 (1435)
T ss_pred HHHHCCCCCC--EEEEHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCHH
T ss_conf 9764312586--15422332443434899980200040533577345762010165079961422576889998750202
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99871834576468999955898499985044431035788876346147677764134461013577567777666577
Q gi|254780439|r 324 VLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEP 403 (1162)
Q Consensus 324 I~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep 403 (1162)
++|+||+ ||.||||||++|.+-+||+||||.|+||||||||||||||+||+||||++|++|+|++|.+|+ +|+|||||
T Consensus 639 Virhlgv-vGEcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~n~Vt~-~T~AcFEp 716 (1435)
T KOG0370 639 VIRHLGV-VGECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELKNSVTK-TTTACFEP 716 (1435)
T ss_pred HEECCCC-CCCCCCEEEECCCCEEEEEEEEEEEEEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CEECCCCC
T ss_conf 1102687-665653044166630479999875774013443267667589999987048603467761125-20014575
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67768985442012114776666677310010022226768999998997503787676655766766458989999976
Q gi|254780439|r 404 SIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRSAI 483 (1162)
Q Consensus 404 ~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l~~~L 483 (1162)
++||+|+|+|||+..||..++.++|+.|||+||||+|||+||||||||+|+.+....||... .+ ..++.++|
T Consensus 717 slDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iGR~feea~QKalr~vd~~~~Gf~~~-~~-------~~~~~~eL 788 (1435)
T KOG0370 717 SLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIGRTFEEAFQKALRMVDPSLLGFMST-PF-------LDDLDEEL 788 (1435)
T ss_pred CHHHEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC-CC-------HHHHHHHH
T ss_conf 32013440565337878788876252565246666221307999988775149232373010-21-------44577773
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 079824899999999738978899877188989999999999999987530376-0279999865337998899988589
Q gi|254780439|r 484 SIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLP-KDFQNLQAIKAMGFSDARLSILSGI 562 (1162)
Q Consensus 484 ~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~-~~~~~l~~aK~~GFSD~~IA~l~~~ 562 (1162)
..|+|.|+|++++||..|||+|+++++|+||+|||+|+++|+++++.|.+.... .+.++|++||++||||+|||++.+.
T Consensus 789 ~~ptd~r~faia~a~~~~~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~~~ll~~AK~~GFsD~QIa~~i~s 868 (1435)
T KOG0370 789 STPTDRRVFAIAAALAKGYSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLPKELLLRAKKLGFSDKQIAKFIGS 868 (1435)
T ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 58754148999999872577999999998999999999999999999874365669999999998729868999988572
Q ss_pred CHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHH
Q ss_conf 99999988986398479986214324436658558972067766655322356777418997276302014766531899
Q gi|254780439|r 563 PCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCC 642 (1162)
Q Consensus 563 ~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v 642 (1162)
+|.+||++|+++||+|..|+|||.||||||.|||+|.||++. ..+..++.+.+||||||+||||+++|||||||
T Consensus 869 ~El~vR~~R~~~gi~P~VKqIDTvAaE~Pa~TNYLY~tyn~~------~hDv~F~~~g~mVlGsGvYrIGSSVEFDwcaV 942 (1435)
T KOG0370 869 TELAVRRLRKELGIHPFVKQIDTVAAEFPAQTNYLYTTYNAT------EHDVDFNEHGVMVLGSGVYRIGSSVEFDWCAV 942 (1435)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCC------CCCCCCCCCCEEEECCCCEECCCCEEECHHHH
T ss_conf 189999999862987045422124223766333699970574------24653388865997243256356205513355
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 99999996598069960686521123245863798416788999999874856782279984451246689888887598
Q gi|254780439|r 643 HASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQI 722 (1162)
Q Consensus 643 ~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv 722 (1162)
.|+++||++|++||||||||||||||||.|||||||+|++|+||||++.|++.| +|+.+|||+|+|+|..|++.|+
T Consensus 943 ~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G----~iis~GGQ~pnNiA~~L~r~~~ 1018 (1435)
T KOG0370 943 GCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEG----IIISVGGQLPNNIALKLHRNGV 1018 (1435)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC----EEEEECCCCCCHHHHHHHHCCC
T ss_conf 479999970984699956865435756777667675423665343554306772----6998368486202137586288
Q ss_pred EEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHH
Q ss_conf 38612752033102867899988870986685421121566555655369716751344445654125548999999999
Q gi|254780439|r 723 PILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLL 802 (1162)
Q Consensus 723 ~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~ 802 (1162)
+|+||||+.||.||||.+|+++|+++|+.||+|+..+|++||.+||+++||||||||||||+|.+|.++|++.+|+.|++
T Consensus 1019 kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~ 1098 (1435)
T KOG0370 1019 KILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLE 1098 (1435)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHCHHHHHHHHH
T ss_conf 67548857611145677899988772788610233226889999998659966851101331015552104788999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECC
Q ss_conf 75210132211112233333333455777745670220120100101023079849998520110215245762798168
Q gi|254780439|r 803 DTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPS 882 (1162)
Q Consensus 803 ~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~Pp 882 (1162)
.|. .+|++|||+|+||+++|+|+||||++-.+.++..+|.||+|+|||||||++.++||
T Consensus 1099 ~A~---------------------~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~haiSEHvEnAGVHSGDAtlv~Pp 1157 (1435)
T KOG0370 1099 QAS---------------------AVSPDHPVVISKFIEGAKEIDVDAVASDGKVLVHAISEHVENAGVHSGDATLVLPP 1157 (1435)
T ss_pred HHH---------------------HCCCCCCEEHHHHHCCCCEECHHHHCCCCEEEEEEHHHHHHCCCCCCCCEEEECCC
T ss_conf 776---------------------40877977727754445010312310478189986233411246557860375781
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 66899999999999999987413357624788512885999852444456304567773988999999998597210024
Q gi|254780439|r 883 RSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASI 962 (1162)
Q Consensus 883 qsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~ 962 (1162)
|.|++.+.++|+++|.+++++|+|.||+|+||+.||+++.|||||.|+||++||+||+.|++++.+|||+|+|..+....
T Consensus 1158 q~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g~~~~~~~ 1237 (1435)
T KOG0370 1158 QDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMGVPVPPDL 1237 (1435)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEEEECCCCCEEHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 12498899999999999988861668743799954980789996403433666300105831999988997389788753
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
Q ss_conf 66667777666873899720388344599986707756310137774199999999999983887988725999964412
Q gi|254780439|r 963 AAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDAD 1042 (1162)
Q Consensus 963 ~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv~d~d 1042 (1162)
. ...+|++||+|+|||.|+.|+||.||+||.|||||+|||++..|||+|||+|+||++|+++..+..+++
T Consensus 1238 ~--------~~~dyV~vKvPqFSf~RLagADp~LgvEMaSTGEVAcFG~~~~eaylkam~sTgF~iPk~~i~i~ig~~-- 1307 (1435)
T KOG0370 1238 L--------LHPDYVAVKVPQFSFSRLAGADPVLGVEMASTGEVACFGEDRYEAYLKAMLSTGFKIPKKNILISIGSY-- 1307 (1435)
T ss_pred C--------CCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC--
T ss_conf 5--------578868997465454000489863456751555134426526999999998537634688717883464--
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCC-CCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 899999999999889899993888999998798156975056878-1078898679854999678998523110899999
Q gi|254780439|r 1043 KKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGR-PHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRA 1121 (1162)
Q Consensus 1043 K~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~-~~i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr~ 1121 (1162)
|.+++++++.|..+||+||||.||++||.++--. +. ..|.. ..+.+++.++.|+||||+|+..++.++||.+||+
T Consensus 1308 k~ell~~~~~l~~~gy~lyat~~t~d~~~~~~~~-~~---~~~~~~~~l~~~~~~~~i~lvinlpr~~~~~~~~Y~~RR~ 1383 (1435)
T KOG0370 1308 KPELLPSARDLAKLGYKLYATNGTADFYLENKYA-EV---SEEPTNDKLRELLANYNIDLVINLPRPSSFVDHGYKTRRL 1383 (1435)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCH-HH---CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 5888899999985480468714635666456776-54---1578737899998627615999657752221467255542
Q ss_pred HHHCCCCEEECHHHHHHHHHHHHH
Q ss_conf 997099799459999999999996
Q gi|254780439|r 1122 TLIRKIPYYTTIAGADAVFQAIQA 1145 (1162)
Q Consensus 1122 Ai~~~ip~~T~~~~a~a~~~al~~ 1145 (1162)
|+|++||++|++++|++|++|++.
T Consensus 1384 AvD~~ipLit~~kcaklf~eal~~ 1407 (1435)
T KOG0370 1384 AVDFSIPLITDVKCAKLFVEALKE 1407 (1435)
T ss_pred ECCCCCCEEECCHHHHHHHHHHHH
T ss_conf 001477322030599999999753
No 5
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=0 Score=1063.69 Aligned_cols=491 Identities=31% Similarity=0.491 Sum_probs=420.2
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 77741899727630201476653189999999996598069960686521123245863798416788999999874856
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
++=+|||||||||+.|||..||||+..|||+||||+||+||+||+||.||+||..+||++||||||+|.|..||++|+|+
T Consensus 4 ~~i~kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPD 83 (1089)
T TIGR01369 4 TDIKKVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPD 83 (1089)
T ss_pred CCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 88878999666731131202302478999999876495799975884723388668660025254588886665316866
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH------HCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78227998445124668988888------759838612752033102867899988870986685421121566555655
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILE------KNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~------~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
| ++..||||||||||.+|+ ++||++|||+.++|..||||++|.++|+++|+|+|++..++|.+||+++|+
T Consensus 84 g----iL~t~GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~ 159 (1089)
T TIGR01369 84 G----ILPTLGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKAAK 159 (1089)
T ss_pred C----HHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 0----002576035777788662068514529178523424352020279999999973899881100278899999996
Q ss_pred HCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 36971675134444565412554899999999975210132211112233333333455777745670220120100101
Q gi|254780439|r 770 EIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVD 849 (1162)
Q Consensus 770 ~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVD 849 (1162)
+|||||+|||||.|||+|..|++|.+||++.+++|++ .||.++|||||+|.||||+|++
T Consensus 160 ~~GyPviVRpAftLGG~GgGiA~n~eEL~~~~~~aL~---------------------~SpI~qvL~EkSl~GWKE~EYE 218 (1089)
T TIGR01369 160 EIGYPVIVRPAFTLGGTGGGIASNEEELKEIVERALS---------------------ASPINQVLVEKSLAGWKEIEYE 218 (1089)
T ss_pred HCCCCEEECCCHHCCCCCCCEECCHHHHHHHHHHHHH---------------------HCCCCEEEEEEECCCCEEEEEE
T ss_conf 2689689810032388998522577899999998863---------------------0888557501100331788988
Q ss_pred EEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEC--CCEEEEEE
Q ss_conf 023079-849998520110215245762798168668999999999999999874133576-24788512--88599985
Q gi|254780439|r 850 ALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGL-INVQYAIK--DGKIYILE 925 (1162)
Q Consensus 850 ai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~-~NIQfa~k--d~~iYVIE 925 (1162)
++||-. |+.+.|-||++||+|||+|||+.|+|+|||||.++|.||++|.+|+|+|||.|. ||||||++ ++++||||
T Consensus 219 VmRD~~dNCItVCNmEN~DPmGVHTGdSIVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgGCNvQFAL~P~s~~Y~vIE 298 (1089)
T TIGR01369 219 VMRDSKDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGGCNVQFALDPDSGRYYVIE 298 (1089)
T ss_pred EEEECCCCEEEEECCCCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEE
T ss_conf 98626878899974547689845707833650763688078999999999999873912167421321507897069998
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCEEEEEEECCCHHHCCCCCCCCCCCCCC
Q ss_conf 2444456304567773988999999998597210024666677776---6687389972038834459998670775631
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDL---SQIKHFAVKESVFPFNKFPGVDILLGPEMRS 1002 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~---~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkS 1002 (1162)
||||.|||.+++|||||||||++|||+++|++|.|+.++.+..+.+ |.+|||.||.|+|||.||++||..||+.|||
T Consensus 299 vNPRvSRSSALASKATGYPiAkvAAKLAvGY~LdEl~N~vT~~T~A~FEPSLDYvVvKIPRW~f~KF~~v~r~LGt~MKS 378 (1089)
T TIGR01369 299 VNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKNPVTKTTPASFEPSLDYVVVKIPRWDFDKFEGVDRKLGTQMKS 378 (1089)
T ss_pred ECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCEEEE
T ss_conf 67882135898766516628999999846887876568888853541046748088606788722105788541521015
Q ss_pred CEEEEEEECCHHHHHHHHHHHCCCCCCC---CCEEEEEECCHHHHHHHHH--HHH---HHHCCCEEEEEHHHHHHHHHCC
Q ss_conf 0137774199999999999983887988---7259999644128999999--999---9988989999388899999879
Q gi|254780439|r 1003 TGEVIGIDQDFPLAFAKSQLGIGVDLPH---EGTVFVSVRDADKKRIVPI--IQN---FKKLGFKIMATEGTARFLESHG 1074 (1162)
Q Consensus 1003 TGEVmgig~~~~eA~~Ka~~a~g~~lP~---~g~vfisv~d~dK~~~~~~--a~~---l~~lGf~l~AT~GTa~~L~~~G 1074 (1162)
|||||+|||||+|||+||+.+...+..- .+.-..-..+.+..+.+.- .+| +--. ++.|+ .|
T Consensus 379 vGEVMAIGRtFEEALQKA~Rsle~~~~Gf~~~~~~~~~~~~~~~~~~l~~p~d~RPYW~f~i----------~~Al~-~G 447 (1089)
T TIGR01369 379 VGEVMAIGRTFEEALQKALRSLEIGLLGFEFDLPDKEVESDEDLEEALKKPTDRRPYWIFAI----------AEALR-RG 447 (1089)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH----------HHHHH-CC
T ss_conf 77773467138999989887653784113644562000357899999728698876189989----------99987-58
Q ss_pred CEEEEEECCCCC-------CCCHH---HHHHCC--CEEEEEECCCC--CCCCCCHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 815697505687-------81078---898679--85499967899--85231108999999970997994599999999
Q gi|254780439|r 1075 LETQKINKVLEG-------RPHIE---DAISNR--QVHLVINTTEG--KKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140 (1162)
Q Consensus 1075 i~~~~v~k~~e~-------~~~i~---d~i~~~--~i~lVINt~~~--~~~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~ 1140 (1162)
..++.|+-++.= =.+|+ +.|++. +..++-..+.. ++.-+-||.=++.|.-.+++-.++++ ..-|
T Consensus 448 ~~V~~~~ElT~ID~wFL~k~~~iV~~e~~l~~~~n~~~~I~~~~~e~L~~aK~lGFSD~~iA~~~~~~~~~~~~--~~~v 525 (1089)
T TIGR01369 448 VSVEEIHELTKIDRWFLHKIKNIVELEKELEELKNKLTGIEELDKELLRKAKKLGFSDAQIARLVNVTEAESIE--ELEV 525 (1089)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHCCC--HHHH
T ss_conf 86899986527888899999999999999875301244533489889999864188878999986897444200--6899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780439|r 1141 QAIQ 1144 (1162)
Q Consensus 1141 ~al~ 1144 (1162)
+.++
T Consensus 526 R~~R 529 (1089)
T TIGR01369 526 RKLR 529 (1089)
T ss_pred HHHH
T ss_conf 9999
No 6
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1022.13 Aligned_cols=393 Identities=73% Similarity=1.156 Sum_probs=387.1
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 76775420505466688899999999879789997487650107845131004337999999999986289889975887
Q gi|254780439|r 13 IGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG 92 (1162)
Q Consensus 13 iGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG 92 (1162)
|||||++|||+|||||||+|||+||||+|++||+|||||||+|||+.+||++|++|+++|++.+||++|+||||+|++||
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~gg 80 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGG 80 (400)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99876066764111436789999998669759997288721247800053026624737889999975376626324687
Q ss_pred CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02688889988759628828757149989998605889999999987898886200023443333323333333444444
Q gi|254780439|r 93 QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKT 172 (1162)
Q Consensus 93 qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1162)
||+||++..|.++|+|++|||+++|+++++|+.+|||++|+++|+++|+|+| |.++
T Consensus 81 qt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~----------------------- 136 (400)
T COG0458 81 QTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIA----------------------- 136 (400)
T ss_pred CCHHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC-----------------------
T ss_conf 4134688998772645644977994587895564209999999998399988-4123-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44333322211111123344444445544489999999998719969994132678664511169999999999899857
Q gi|254780439|r 173 LSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHAS 252 (1162)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s 252 (1162)
++++++.+++++|||||||||+|++||+|++|++|++||.+++..++..|
T Consensus 137 ------------------------------~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s 186 (400)
T COG0458 137 ------------------------------HSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS 186 (400)
T ss_pred ------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCC
T ss_conf ------------------------------56777765576369977980685788875168718999999987322447
Q ss_pred CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99827986644997899999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r 253 PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES 332 (1162)
Q Consensus 253 ~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v 332 (1162)
|.+||++|||+.||||+|++||||.++||+++|+|||+||+|+|||||++|+|+|||+|.+||+||+++++++|+||++
T Consensus 187 ~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~- 265 (400)
T COG0458 187 PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIE- 265 (400)
T ss_pred CCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC-
T ss_conf 6420012442168569999999837998799986786565664443236521455654378899888777788874114-
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 76468999955898499985044431035788876346147677764134461013577567777666577677689854
Q gi|254780439|r 333 GGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKI 412 (1162)
Q Consensus 333 G~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~ldyv~vK~ 412 (1162)
|+||||||++|.+++|||||||||+||||||||||||||+|++|+|+|+||+|+|++||+|+ .++|+|||++|||++|+
T Consensus 266 G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~it~-~t~a~fePsldyvv~k~ 344 (400)
T COG0458 266 GGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDITG-RTPASFEPSLDYVVTKI 344 (400)
T ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCC-CCCCCCCCCCCEEEEEC
T ss_conf 78731489869985599999568767640315544687699999975035670654476644-43444577666036634
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 4201211477666667731001002222676899999899750378767
Q gi|254780439|r 413 PRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTG 461 (1162)
Q Consensus 413 p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g 461 (1162)
|||+|+||+++|++|||+|||+||||+|||||+||||||+||||.+..|
T Consensus 345 pr~~f~kf~~~~~~l~~~mks~gevm~igr~f~eal~ka~~~l~~~~~~ 393 (400)
T COG0458 345 PRFDFEKFPGADRRLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGLAG 393 (400)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 7787321345563310023001028996312999999999861146651
No 7
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=1013.16 Aligned_cols=389 Identities=35% Similarity=0.595 Sum_probs=358.7
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 77741899727630201476653189999999996598069960686521123245863798416788999999874856
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
.+-||||||||||++|||++||||||+||+++|||+||++|||||||+|||||+|++||+||||||+|.|..|+++|+|+
T Consensus 5 ~~ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd 84 (1063)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPD 84 (1063)
T ss_pred CCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 78788999898825103723326569999999998699899987985441078776643787279899999999975999
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78227998445124668988888759------838612752033102867899988870986685421121566555655
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQ------IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~g------v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
| ++++||||||+||+..|++.| +++|||++++|+.+|||++|.++|+++|+|+|++.+++|.+||+++|+
T Consensus 85 ~----il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~a~ 160 (1063)
T PRK05294 85 A----ILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEVAE 160 (1063)
T ss_pred E----EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHH
T ss_conf 7----886677805999999999759677649727569999999777899999999976999997253099999999998
Q ss_pred HCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 36971675134444565412554899999999975210132211112233333333455777745670220120100101
Q gi|254780439|r 770 EIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVD 849 (1162)
Q Consensus 770 ~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVD 849 (1162)
++||||||||||+|||+||.||+|++||++++.+++. .|+.+|||||+||.||+|+|+|
T Consensus 161 ~igyPvivRps~~LGG~g~~i~~n~~eL~~~~~~~~~---------------------~S~~~qvLie~sl~gwkEie~e 219 (1063)
T PRK05294 161 EIGYPVIIRPSFTLGGTGGGIAYNREELEEIVERGLD---------------------LSPTTEVLIEESLLGWKEYEME 219 (1063)
T ss_pred HCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHH---------------------HCCCCCEEEEHHCCCCEEEEEE
T ss_conf 6599889984421678764043499999999999996---------------------1999868966111798899999
Q ss_pred EEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEE--CCCEEEEEE
Q ss_conf 023079-8499985201102152457627981686689999999999999998741335-762478851--288599985
Q gi|254780439|r 850 ALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVI-GLINVQYAI--KDGKIYILE 925 (1162)
Q Consensus 850 ai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~-G~~NIQfa~--kd~~iYVIE 925 (1162)
++||+. ++++.|.|||+||+|||||||+||+|+|||+++++|+||+++.+|+++|||+ |.||||||+ +++++||||
T Consensus 220 v~rD~~~n~i~v~~mEnidp~GIHtGDSi~vaP~qTL~d~e~q~lR~~a~kI~~~L~iv~G~~NiQfA~~p~~~~~~VIE 299 (1063)
T PRK05294 220 VMRDKADNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAILREIGVETGGSNVQFAVNPKDGRYVVIE 299 (1063)
T ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 99818999899954113545645666725356886589899999999999999982957364479998748998489996
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC
Q ss_conf 24444563045677739889999999985972100246666777---766687389972038834459998670775631
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRP---DLSQIKHFAVKESVFPFNKFPGVDILLGPEMRS 1002 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~---~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkS 1002 (1162)
+|||+|||+||+|||||||++++|+|+|+|++|.++.++..... ..|.+||++||.|+|||.||+++|..|||+|||
T Consensus 300 vNPR~SRssalaSKaTGyPiA~vaaklalG~~L~ei~n~vT~~t~A~fEP~ldyv~vK~p~~~f~kf~~~~~~Lg~~mks 379 (1063)
T PRK05294 300 MNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIKNDITGKTPASFEPSIDYVVTKIPRFAFEKFPGADRRLTTQMKS 379 (1063)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCC
T ss_conf 37750010688888738878999999871797578367644663144477566599970477710035854432430113
Q ss_pred CEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 013777419999999999998388798
Q gi|254780439|r 1003 TGEVIGIDQDFPLAFAKSQLGIGVDLP 1029 (1162)
Q Consensus 1003 TGEVmgig~~~~eA~~Ka~~a~g~~lP 1029 (1162)
||||||+|++|+|||+||+.+.....+
T Consensus 380 ~Gevm~igr~feea~~KAirSle~~~~ 406 (1063)
T PRK05294 380 VGEVMAIGRTFEESLQKALRSLEIGLT 406 (1063)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 410222223289999999984425866
No 8
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=0 Score=1004.81 Aligned_cols=388 Identities=35% Similarity=0.574 Sum_probs=371.7
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 77741899727630201476653189999999996598069960686521123245863798416788999999874856
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
++-||||||||||++|||+.||||||+||+++|||+||++|||||||+|||||++++||+||||||+|.|..|+++|+|+
T Consensus 5 ~dikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd 84 (1068)
T PRK12815 5 TDIKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPD 84 (1068)
T ss_pred CCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 77888999898815312344656569999999998699899988983262089874443788589899999999974999
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78227998445124668988888759------838612752033102867899988870986685421121566555655
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQ------IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~g------v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
| ++.+|||||++||+..|.+.| +++|||++++|+.+|||++|.++|+++|+|+|++.+++|.+||+++|+
T Consensus 85 ~----il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~a~ 160 (1068)
T PRK12815 85 A----LLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRFAE 160 (1068)
T ss_pred E----EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHH
T ss_conf 8----986777847999999999759778659649679999998645999999999976999997052199999999998
Q ss_pred HCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 36971675134444565412554899999999975210132211112233333333455777745670220120100101
Q gi|254780439|r 770 EIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVD 849 (1162)
Q Consensus 770 ~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVD 849 (1162)
++||||+|||||+|||++|.|++|++||++|+.+++. .|+.+|||||+||.+|+|+|+|
T Consensus 161 ~ig~PvivRps~~lGg~g~~i~~n~~eL~~~~~~~~~---------------------~S~~~~vlie~sl~gwkEie~e 219 (1068)
T PRK12815 161 KIGFPIIVRPAYTLGGDGGGIAENEEELEQLARQGLQ---------------------ASPIHQCLLEESIAGWKEIEYE 219 (1068)
T ss_pred HCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHH---------------------HCCCCCEEEEHHCCCCEEEEEE
T ss_conf 6699899983610668965044599999999999996---------------------3999857865011797699999
Q ss_pred EEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCEEEEEEE
Q ss_conf 023079-84999852011021524576279816866899999999999999987413357624788512--885999852
Q gi|254780439|r 850 ALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK--DGKIYILEV 926 (1162)
Q Consensus 850 ai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k--d~~iYVIEv 926 (1162)
++||+. ++++.|.|||+||+|||||||+||+|+|||+++++|+||+++.+|+++|||+|.||||||++ ++++|||||
T Consensus 220 v~RD~~~n~i~vc~mEnidP~GIHTGDSi~vaP~qTL~d~e~q~lR~~a~~I~~~lgv~G~~NiQFAv~p~~~~~~VIEv 299 (1068)
T PRK12815 220 VMRDRNDNCVTVCNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRSASLKIIRALGVVGGCNIQFALDPRSKQYYVIEV 299 (1068)
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCEEEEEC
T ss_conf 99988989799854123544543567745345781269999999999999999972801010579988699982899964
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCC
Q ss_conf 44445630456777398899999999859721002466667777---666873899720388344599986707756310
Q gi|254780439|r 927 NPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPD---LSQIKHFAVKESVFPFNKFPGVDILLGPEMRST 1003 (1162)
Q Consensus 927 NpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~---~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkST 1003 (1162)
|||+|||+||+|||||||++++|+|+|+|++|.++.++...... .|.+||++||.|+|||.||+++|..|||+||||
T Consensus 300 NPR~SRssalaSKATGyPiAkvaaklalG~~L~ei~n~iTg~t~A~fEP~lDyvvvK~P~~~F~kf~~~d~~Lgt~Mks~ 379 (1068)
T PRK12815 300 NPRVSRSSALASKATGYPIAKIAAKLAVGYTLDEIKNPLTGLTYASFEPTLDYVVVKFPRWPFDKFGYADRTLGTQMKAT 379 (1068)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 78622024788875088489999998638877770664137730333775776999740566444678875447512333
Q ss_pred EEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 1377741999999999999838879
Q gi|254780439|r 1004 GEVIGIDQDFPLAFAKSQLGIGVDL 1028 (1162)
Q Consensus 1004 GEVmgig~~~~eA~~Ka~~a~g~~l 1028 (1162)
|||||||++|+|||+||+.|.....
T Consensus 380 Gevm~igr~f~eA~~KAlrsle~~~ 404 (1068)
T PRK12815 380 GEVMAIGRNFESAFQKALRSLEIKR 404 (1068)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2220030028999999998633576
No 9
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=673.68 Aligned_cols=380 Identities=33% Similarity=0.597 Sum_probs=361.0
Q ss_pred ECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 72763020147665318999999999659806996068652112324586379841678899999987485678227998
Q gi|254780439|r 624 LGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIV 703 (1162)
Q Consensus 624 lGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~ 703 (1162)
+||||+.|||.+||||+..+|+++||+.||++|+||+||.|.+||+..+|+.|+||++.|.+..|+++|+|++ ++.
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Da----ilp 76 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDA----ILP 76 (400)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCE----EEC
T ss_conf 9987606676411143678999999866975999728872124780005302662473788999997537662----632
Q ss_pred ECCCHHHHHHHHHHHHC------CCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 44512466898888875------983861275203310286789998887098668542112156655565536971675
Q gi|254780439|r 704 QFGGQTPLKLSKILEKN------QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLI 777 (1162)
Q Consensus 704 q~gGqt~~~la~~L~~~------gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLV 777 (1162)
.|||||++|++..|++. |++++|+++++|..+|||++|++.|+++|++.| +..+++.+++.+++.++||||+|
T Consensus 77 ~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIV 155 (400)
T COG0458 77 TLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIV 155 (400)
T ss_pred CCCCCCHHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 46874134688998772645644977994587895564209999999998399988-41235677776557636997798
Q ss_pred ECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC-C
Q ss_conf 134444565412554899999999975210132211112233333333455777745670220120100101023079-8
Q gi|254780439|r 778 RPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND-Q 856 (1162)
Q Consensus 778 RPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~-~ 856 (1162)
||||.+||.+-.|+||++||.+++...+. .++.++||+++|+.+|+|+|+++++|+. +
T Consensus 156 rP~~~lGG~G~~i~~n~eel~~~~~~~l~---------------------~s~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 156 KPSFGLGGSGGGIAYNEEELEEIIEEGLR---------------------ASPVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred ECCCCCCCCCEEEEECHHHHHHHHHHCCC---------------------CCCCCCCEEEEEECCCEEEEEEEEEECCCC
T ss_conf 06857888751687189999999873224---------------------476420012442168569999999837998
Q ss_pred EEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--CEEEEEEECCCCCCCH
Q ss_conf 49998520110215245762798168668999999999999999874133576247885128--8599985244445630
Q gi|254780439|r 857 VIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIYILEVNPRASRTV 934 (1162)
Q Consensus 857 v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd--~~iYVIEvNpRaSRtv 934 (1162)
+++.+-||+++++|+|.|||+.+.|+|+|++..++.+|..+.+++++|++.|.+|+||++.+ +++||||+|||.|||.
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 79998678656566444323652145565437889988877778887411478731489869985599999568767640
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 45677739889999999985972100246666777---766687389972038834459998670775631013777419
Q gi|254780439|r 935 PFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRP---DLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQ 1011 (1162)
Q Consensus 935 PfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~---~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~ 1011 (1162)
+..|||||+|++++|+++++|..|.++..+..... ..|.++|+.+|.|.|+|.||+++|..||++|||+||||.+|+
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr 374 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGR 374 (400)
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECC
T ss_conf 31554468769999997503567065447664443444577666036634778732134556331002300102899631
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998388798
Q gi|254780439|r 1012 DFPLAFAKSQLGIGVDLP 1029 (1162)
Q Consensus 1012 ~~~eA~~Ka~~a~g~~lP 1029 (1162)
+|+||++||+.|.....+
T Consensus 375 ~f~eal~ka~~~l~~~~~ 392 (400)
T COG0458 375 TFEEALQKALRSLEIGLA 392 (400)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 299999999986114665
No 10
>KOG0370 consensus
Probab=100.00 E-value=0 Score=678.85 Aligned_cols=384 Identities=32% Similarity=0.470 Sum_probs=363.9
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 77418997276302014766531899999999965980699606865211232458637984167889999998748567
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
..+||+|||||..-|||..||||+..||+++|||.|+.||+||.|-.||+|.-..+|++||-|+|.|.|..+++.|+|+|
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~ 455 (1435)
T KOG0370 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDG 455 (1435)
T ss_pred CCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCE
T ss_conf 35179998158733212403554078898765532617999789601000255521289995058799999988618773
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 82279984451246689888887------598386127520331028678999888709866854211215665556553
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEK------NQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE 770 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~------~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~ 770 (1162)
+.+.|||||++|+.-.|.+ .|+++|||+.++|-..|||..|++-|++++.+..++..+.++++|+++|++
T Consensus 456 ----il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~ 531 (1435)
T KOG0370 456 ----ILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAER 531 (1435)
T ss_pred ----EEEECCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----7884277654456435300210000341543787552123142788999987631505625667679999988886
Q ss_pred CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 69716751344445654125548999999999752101322111122333333334557777456702201201001010
Q gi|254780439|r 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDA 850 (1162)
Q Consensus 771 iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDa 850 (1162)
+||||+||..|-|||.|..++.|++||......++ +...+||+||.+.||||+|+++
T Consensus 532 l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~-----------------------a~s~QilvekSlkGwkevEyev 588 (1435)
T KOG0370 532 LGYPVIVRAAYALGGLGSGFANNEEELQDLAAQAL-----------------------ALSPQILVEKSLKGWKEVEYEV 588 (1435)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------------------CCCCEEEEHHHHCCCCCEEEEE
T ss_conf 28289999999853766433444899999976431-----------------------2586154223324434348999
Q ss_pred EEECCCEEE-EEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCEEEEEEEC
Q ss_conf 230798499-9852011021524576279816866899999999999999987413357624788512--8859998524
Q gi|254780439|r 851 LCQNDQVIV-VGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK--DGKIYILEVN 927 (1162)
Q Consensus 851 i~Dg~~v~I-~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k--d~~iYVIEvN 927 (1162)
++|..+.+| .+.||++||.|||.|||+.|.|+|+||+++++.+|..+.++.++|+|+|.||||||+. ..++|+||+|
T Consensus 589 vrDa~~nciTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVN 668 (1435)
T KOG0370 589 VRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVN 668 (1435)
T ss_pred EECCCCCHHHHCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCHHHEECCCCCCCCCCEEEECCCCEEEEEEEEE
T ss_conf 80200040533577345762010165079961422576889998750202110268766565304416663047999987
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCE
Q ss_conf 444563045677739889999999985972100246666777---76668738997203883445999867077563101
Q gi|254780439|r 928 PRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRP---DLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTG 1004 (1162)
Q Consensus 928 pRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~---~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTG 1004 (1162)
.|.||+.++.||+|||||+.+|+|+.+|..|.++........ ..|.+||+.||.|.|...||..|+..+|.-|||.|
T Consensus 669 arLSrssaLASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~AcFEpslDY~v~KiprWDl~kf~~vs~~igssmKSvg 748 (1435)
T KOG0370 669 ARLSRSSALASKATGYPLAYTAAKLALGIPLPELKNSVTKTTTACFEPSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVG 748 (1435)
T ss_pred EEEEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHEEEECCCCCHHHHHHHHHHHCHHHHHHH
T ss_conf 57740134432676675899999870486034677611252001457532013440565337878788876252565246
Q ss_pred EEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 37774199999999999983887
Q gi|254780439|r 1005 EVIGIDQDFPLAFAKSQLGIGVD 1027 (1162)
Q Consensus 1005 EVmgig~~~~eA~~Ka~~a~g~~ 1027 (1162)
|||+|||+|+|||.||+......
T Consensus 749 Evm~iGR~feea~QKalr~vd~~ 771 (1435)
T KOG0370 749 EVMAIGRTFEEAFQKALRMVDPS 771 (1435)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 66622130799998877514923
No 11
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=0 Score=593.57 Aligned_cols=458 Identities=23% Similarity=0.298 Sum_probs=392.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
.|||||.+.|.| +..++|||||+||+||+|||||++.|++..+||++| ++| |+.+.|.++.
T Consensus 2 f~kvLIANRGEI-----------A~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A 70 (497)
T PRK08654 2 FKKILIANRGEI-----------AIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVA 70 (497)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 760899878799-----------999999999859939998883785489978889899848988321216899999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
++.++|||||||| +|+|+.-| ++.||+|+|+++++|+.++||..|+++|.++|+|++|+
T Consensus 71 ~~~g~dAIhPGYG---------FLSEn~~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG-------- 133 (497)
T PRK08654 71 KKAGAEAIHPGYG---------FLSENPKFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPG-------- 133 (497)
T ss_pred HHHCCCEEECCHH---------HHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC--------
T ss_conf 9809999957776---------75548999999998799999939999998658899999999809986899--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
+...+++.++|.++|++|||||||||||++||+||++
T Consensus 134 -------------------------------------------~~~~v~~~~ea~~~A~~IGyPV~iKAs~GGGGrGmri 170 (497)
T PRK08654 134 -------------------------------------------TEEGIEDIEEAKEVAEEIGYPVIIKASAGGGGIGMRV 170 (497)
T ss_pred -------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEE
T ss_conf -------------------------------------------7566799999999998649845876526888886589
Q ss_pred CCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 169999999999----8998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|++++||.++++ ++..+|++++|+|||||.+|||||+||++|++||++++|.+||+.|+++|+..++ +|+++|+
T Consensus 171 V~~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RHIEVQvl~D~~GnvihlgeRdCSiQRr~QKvIEe--aPap~l~ 248 (497)
T PRK08654 171 VYNEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQVLADKHGNVIHLGDRECSIQRRHQKLIEE--APSPIMT 248 (497)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEECCEECCEEECCCCEEEE--CCCCCCC
T ss_conf 96025689999999999887459984579884155537899999844797867146023436268636997--8999898
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
++.+|+|+++|+++++++|| +|+|||||+++ +++|||||||||+++..+..+++||++|.+...+||.|++|+...+
T Consensus 249 ~~~r~~m~~~Av~la~~vgY-~gaGTVEFl~d--~g~fyFlEmNtRlQVEHpVTE~vTGiDLV~~Qi~iA~G~~L~~~q~ 325 (497)
T PRK08654 249 PELRERMGEAAVKAAKAINY-ENAGTVEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEKLSFKQE 325 (497)
T ss_pred HHHHHHHHHHHHHHHHHHCE-ECCCEEEEEEE--CCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 89999999999998887343-02332799874--8839999612442245542166608719999999867998891003
Q ss_pred CCCCCCCCC------CCCCCCCEEEE--EEEECCCCCCCCCCCCCCCCCCCC---------CHHHHCCCCHHHHHHHHHH
Q ss_conf 756777766------65776776898--544201211477666667731001---------0022226768999998997
Q gi|254780439|r 391 DITGGKTPA------SFEPSIDYIVT--KIPRFTFEKFPGSDVTLTTSMKSV---------GEVMAIGRTFAESLQKALR 453 (1162)
Q Consensus 391 ~~~~~~~~a------~~Ep~ldyv~v--K~p~f~f~kf~~~~~~Lgt~MkS~---------GEvm~iGr~f~eA~~KAlr 453 (1162)
++....+ | +-.|.-|+.-. ++.+|.+...+++...-|..+..+ +.++..|++.++|+.|..|
T Consensus 326 ~i~~~Gh-AIe~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvD~~v~~G~~v~~~yDsmlaKli~~g~~R~~Ai~r~~r 404 (497)
T PRK08654 326 DITIRGH-AIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYTIPPYYDSMISKLIVWGRTREEAIARMKR 404 (497)
T ss_pred CCCCCEE-EEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHHHHHHH
T ss_conf 7777513-999981035888786458736607975999988996456468973886543330367988999999999999
Q ss_pred HCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH-HHHHHH
Q ss_conf 50378-7676655766766458989999976079824899999999738978899877188989999999999-999987
Q gi|254780439|r 454 GLETG-LTGLDEIHIPSMESDNDPNALRSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIV-DVEHRI 531 (1162)
Q Consensus 454 sle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv-~~e~~l 531 (1162)
+|..- ..|. ..+...|...|.+|. |+. ..+|--||+++.+|+ .+++.+
T Consensus 405 AL~e~~I~Gv----------~Tni~~l~~il~~~~----------F~~----------g~~~T~fle~~~~~~~~~~~~~ 454 (497)
T PRK08654 405 ALYEYIILGV----------KTNIPFHKAVMRNPN----------FIR----------GNLHTHFIEELENILEAMKRYV 454 (497)
T ss_pred HHHCCEEECC----------CCCHHHHHHHHCCCC----------EEC----------CCCCCHHHHCCHHHHHHHHHHH
T ss_conf 9854699895----------487999999857902----------007----------9973426744888999999998
Q ss_pred HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 53037602799998653379988999885899999998898639
Q gi|254780439|r 532 REHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMG 575 (1162)
Q Consensus 532 ~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~ 575 (1162)
+...... -..+++++-+++.+|.+.+....-++.+.++.+
T Consensus 455 ~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 494 (497)
T PRK08654 455 KEEKERE----ATLAEKFFAGNKKVAAIAAAVNAYISSLSKKNE 494 (497)
T ss_pred HHHHHHH----HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCC
T ss_conf 7777668----789998568872004578779999999986313
No 12
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=0 Score=545.00 Aligned_cols=399 Identities=21% Similarity=0.281 Sum_probs=343.6
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHH
Q ss_conf 66556999976775420505466688899999999879789997487650107845131004-337-------9999999
Q gi|254780439|r 4 RQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVA 75 (1162)
Q Consensus 4 ~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~ 75 (1162)
+.++|||||+++|+| +.+++|||||+|++||+|||+++.-+.....||+.| +.| |+.+.|.
T Consensus 1 kr~~kkvLIANRGEI-----------A~Ri~ra~~elgi~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii 69 (446)
T PRK08462 1 KKELKRILIANRGEI-----------ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAII 69 (446)
T ss_pred CCCCCEEEEECCHHH-----------HHHHHHHHHHCCCCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 997888999896099-----------999999999829969999376771676287598989828998433414899999
Q ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHCC----CHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9998628988997588702688889988759----628828757149989998605889999999987898886200023
Q gi|254780439|r 76 KIIEKERPDAILPTTGGQTALNTALSLKRMG----VLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA 151 (1162)
Q Consensus 76 ~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~g----il~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~ 151 (1162)
++.+..++|||||||| +|+|+. .++++|+.|+|+++++|++++||..++++|.++|+|++|+
T Consensus 70 ~~a~~~~~dAihPGyG---------fLSEn~~fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg----- 135 (446)
T PRK08462 70 SAAEIFEADAIFPGYG---------FLSENQNFVEICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPG----- 135 (446)
T ss_pred HHHHHHCCCEEECCCH---------HHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC-----
T ss_conf 9999959198986820---------55408799999997799898959999998409598999999859980678-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 44333332333333344444444333322211111123344444445544489999999998719969994132678664
Q gi|254780439|r 152 TDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTG 231 (1162)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G 231 (1162)
+...+++.++|.++|++|||||||||++++||+|
T Consensus 136 ----------------------------------------------~~~~v~~~~ea~~~a~~iGyPV~lKas~GGGGrG 169 (446)
T PRK08462 136 ----------------------------------------------SDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRG 169 (446)
T ss_pred ----------------------------------------------CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCE
T ss_conf ----------------------------------------------6787799999999999729956876327899874
Q ss_pred CCCCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCC
Q ss_conf 51116999999999----98998579982798664499789999999728998899963000000100001013433732
Q gi|254780439|r 232 GGIAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPAL 307 (1162)
Q Consensus 232 ~~iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~q 307 (1162)
|++|++++||.+++ .+|+..|++++|+|||||.+|||||+||++|++||+++++.+||+.|++.|+. +.++|++
T Consensus 170 mriv~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIEvQvl~D~~Gn~ihl~eRdCSiQRr~QKv--iEeaPa~ 247 (446)
T PRK08462 170 MRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSMQRRHQKL--IEESPAV 247 (446)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCE--EEECCCC
T ss_conf 28957679999999999877886058886699985035507899988528998888532123663467875--8978999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 28988999999999999987183457646899995589849998504443103578887634614767776413446101
Q gi|254780439|r 308 TLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE 387 (1162)
Q Consensus 308 TL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~e 387 (1162)
+|+++.+|+|+++|.++++++|| .|+|||||++|+++++|||||||||+....+....+||.+|.+.-.+||.|++|..
T Consensus 248 ~l~~~~r~~m~~~A~~la~~vgY-~gaGTvEFl~d~~~~~fyFlE~NtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~l~~ 326 (446)
T PRK08462 248 VLDEKTRERLLETAIKAAKAIGY-VGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPS 326 (446)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 89989999988899999986483-65433899980799718999743342100111122148779999999867999875
Q ss_pred CCC-C---------CCCCCCCCCCCCCCCEEEEE-EEE---CCCCCCCCCCCCCCCCCCC-CCHHHHCCCCHHHHHHHHH
Q ss_conf 357-7---------56777766657767768985-442---0121147766666773100-1002222676899999899
Q gi|254780439|r 388 LGN-D---------ITGGKTPASFEPSIDYIVTK-IPR---FTFEKFPGSDVTLTTSMKS-VGEVMAIGRTFAESLQKAL 452 (1162)
Q Consensus 388 i~~-~---------~~~~~~~a~~Ep~ldyv~vK-~p~---f~f~kf~~~~~~Lgt~MkS-~GEvm~iGr~f~eA~~KAl 452 (1162)
-.+ . ++-.+ +..|.|+...+..- .|- ..++..-.....+.+...| .+.++..|+++++|+.|..
T Consensus 327 q~~i~~~GhaIe~Ri~AEd-p~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai~rl~ 405 (446)
T PRK08462 327 QESIKLKGHAIECRITAED-PKKFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMK 405 (446)
T ss_pred CCCCCCCCEEEEEEEECCC-CCCCCCCCEEEEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHHHHHH
T ss_conf 6666726434223420458-776799875887898799999896388778598797655741358898999999999999
Q ss_pred HHC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 750-37876766557667664589899999760798
Q gi|254780439|r 453 RGL-ETGLTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 453 rsl-e~~~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
|.| +....|.. .+...|...|.+|.
T Consensus 406 ~aL~e~~I~Gv~----------Tni~~l~~il~~~~ 431 (446)
T PRK08462 406 RALDEFKVEGIK----------TTIPFHLEMMENAD 431 (446)
T ss_pred HHHHCCEEECCC----------CCHHHHHHHHCCCC
T ss_conf 998445998932----------84999999857820
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=0 Score=482.65 Aligned_cols=394 Identities=19% Similarity=0.281 Sum_probs=334.1
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHH
Q ss_conf 6556999976775420505466688899999999879789997487650107845131004-337-------99999999
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAK 76 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~ 76 (1162)
+.||||||.+.|.| +..++|+|||+||+||.|+|.++.-+.+-.+||+.| ++| |+.+.|.+
T Consensus 3 ~~ikkvLIANRGEI-----------A~Riirt~relgi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii~ 71 (458)
T PRK12833 3 SRIRTVLVANRGEI-----------AVRVIRAAHELGMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILA 71 (458)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 77878999778699-----------9999999998399899991857655835874999998289870013269999999
Q ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99862898899758870268888998875962----88287571499899986058899999999878988862000234
Q gi|254780439|r 77 IIEKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANAT 152 (1162)
Q Consensus 77 Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~ 152 (1162)
+.+..+.|||||||| +|+|+.-| ++.||.|+|+++++|++++||..++++|.+.|+|+.|+
T Consensus 72 ~A~~~g~dAiHPGYG---------FLSEna~FA~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpg------ 136 (458)
T PRK12833 72 AARQCGADAIHPGYG---------FLSENAAFAAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPG------ 136 (458)
T ss_pred HHHHHCCCEEECCCC---------HHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC------
T ss_conf 999829999976866---------25529999999997899899949999998509699999999849996689------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 43333323333333444444443333222111111233444444455444899999999987199699941326786645
Q gi|254780439|r 153 DIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGG 232 (1162)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~ 232 (1162)
+...+++.+++.++|++||||||+||++++||+||
T Consensus 137 ---------------------------------------------s~~~v~~~~ea~~~a~~iGyPv~iKAs~GGGGrGm 171 (458)
T PRK12833 137 ---------------------------------------------SDGVVASLDAALEVAARIGYPVMIKAAAGGGGRGI 171 (458)
T ss_pred ---------------------------------------------CCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCE
T ss_conf ---------------------------------------------66766779999999986597542133258998710
Q ss_pred CCCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 1116999999999----989985799827986644997899999997289988999630000001000010134337322
Q gi|254780439|r 233 GIAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALT 308 (1162)
Q Consensus 233 ~iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qT 308 (1162)
++|++++||.+++ .++..+|++++++|||++.+|||||+||++|++ |+++++.+||+.|++.|+..+++ |++.
T Consensus 172 riv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~-~~vhl~eRdCSiQRr~QKviEea--Psp~ 248 (458)
T PRK12833 172 RVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-NVVHLFERECSLQRRRQKILEEA--PSPS 248 (458)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCC-CEEEEEECCCCCCCCCCCEEEEC--CCCC
T ss_conf 79526411489999999999972699764787613675079999985478-76998502565656777558877--9997
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 89889999999999999871834576468999955898499985044431035788876346147677764134461013
Q gi|254780439|r 309 LTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDEL 388 (1162)
Q Consensus 309 L~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei 388 (1162)
|+++.+++|+++|.++++++|| +|+|||||++|+.+++|||||||||+..--+--...||..|.+.--+||.|..|.-.
T Consensus 249 l~~~~r~~l~~~a~~la~~v~y-~gagTvEFl~d~~~~~fyFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L~~~ 327 (458)
T PRK12833 249 LTPAQRDALCASATRLARAVGY-RGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVREMLRIADGEPLRFA 327 (458)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf 8999999998899999885331-000026667865889689996213644444212233188599999999779977864
Q ss_pred CCCCCC-----------CCCCCCCCCCCCEEEEEEEECCCCCCCCC--------CCCCCCCCCC-CCHHHHCCCCHHHHH
Q ss_conf 577567-----------77766657767768985442012114776--------6666773100-100222267689999
Q gi|254780439|r 389 GNDITG-----------GKTPASFEPSIDYIVTKIPRFTFEKFPGS--------DVTLTTSMKS-VGEVMAIGRTFAESL 448 (1162)
Q Consensus 389 ~~~~~~-----------~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~--------~~~Lgt~MkS-~GEvm~iGr~f~eA~ 448 (1162)
..++.. .+....|-|+.-. +-+|.|..-+++ .....+.--| .+-++..|++.++|+
T Consensus 328 q~~i~~~GhaIe~RI~AEdp~~~f~Ps~G~----i~~~~~P~g~gvRvDt~v~~G~~v~~~yDsllaKlI~~g~~R~~Ai 403 (458)
T PRK12833 328 QGDIALRGAALECRINAEDPLQDFRPNPGR----IDALVWPAGPGVRVDSLLYPGYAVPPFYDSLLAKLIVHDESRAAAL 403 (458)
T ss_pred HHCCCCCCEEEEEEEECCCCCCCCCCCCEE----EEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHEEEEECCCHHHHH
T ss_conf 210666750899975225887786768838----5268639999888888702779748875504300368889999999
Q ss_pred HHHHHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9899750378-76766557667664589899999760798
Q gi|254780439|r 449 QKALRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 449 ~KAlrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
.|..|.|..- ..|+ ..+...|.+.|.+|.
T Consensus 404 ~rl~~aL~e~~I~Gv----------~TNi~~l~~il~~~~ 433 (458)
T PRK12833 404 ARAARALEELRIDGM----------KTTAPLHRALLADAD 433 (458)
T ss_pred HHHHHHHHCCEEECC----------CCCHHHHHHHHCCCC
T ss_conf 999999844799893----------387999999867900
No 14
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=492.00 Aligned_cols=826 Identities=20% Similarity=0.285 Sum_probs=523.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEE-----------CC----CCHHH
Q ss_conf 9999767754205054666888999999998797899974876501078451310043-----------37----99999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYT-----------EP----ITPEV 73 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~-----------eP----lt~e~ 73 (1162)
||||.++|.|-| ..-|||.|+|||||+|+|.-...++++-.||+.|+ .| |..+-
T Consensus 1 kvLVANRgEIAI-----------RvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~e 69 (1169)
T TIGR01235 1 KVLVANRGEIAI-----------RVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDE 69 (1169)
T ss_pred CEEEECCCCCCH-----------HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 914531665202-----------464231013872699965315745574023410011476310102687213047156
Q ss_pred HHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHH----HHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999998628988997588702688889988759628----8287571499899986058899999999878988862000
Q gi|254780439|r 74 VAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLD----RYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILA 149 (1162)
Q Consensus 74 v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~----~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~ 149 (1162)
|.+|.++.+.|||||||| +|+|+.-|. +-||.+||+++++|++.+|+-..|++..+.|+|+.|
T Consensus 70 iI~vAk~~~vDaiHPGYG---------fLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvP---- 136 (1169)
T TIGR01235 70 IIRVAKKNKVDAIHPGYG---------FLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVP---- 136 (1169)
T ss_pred HHHHHHCCCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEEC----
T ss_conf 989960078977708856---------2248878999998689567379747775405768999888877887636----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 23443333323333333444444443333222111111233444444455444899999999987199699941326786
Q gi|254780439|r 150 NATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGG 229 (1162)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG 229 (1162)
+....+++++|+.+|++++|||||+|+||++||
T Consensus 137 -----------------------------------------------gt~Gp~~t~eev~~f~~~~GYPvi~KAs~GGGG 169 (1169)
T TIGR01235 137 -----------------------------------------------GTDGPVETLEEVLDFAKAIGYPVIIKASYGGGG 169 (1169)
T ss_pred -----------------------------------------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf -----------------------------------------------886875259999999975699589872168897
Q ss_pred CCCCCCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 6451116999999999----989985799827986644997899999997289988999630000001000010134337
Q gi|254780439|r 230 TGGGIAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAP 305 (1162)
Q Consensus 230 ~G~~iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP 305 (1162)
||||||..++|+.+.+ +||.++|+.++|+|||+|+.+||||+|++.|++||++|+.+|+|+.||++|+..+ |||
T Consensus 170 RGMRvvR~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSVQRRhQKVvE--~AP 247 (1169)
T TIGR01235 170 RGMRVVRSEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE--VAP 247 (1169)
T ss_pred CCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCEEECCEEEE--ECC
T ss_conf 201686075679999888768873104898069851024882078987634889878887507762000550788--678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 32289889999999999999871834576468999955898499985044431035788876346147677764134461
Q gi|254780439|r 306 ALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTL 385 (1162)
Q Consensus 306 ~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L 385 (1162)
+.+|+.+.+|+|.++|+|||+++|| .+++||+|++|-.+++|||||||||+===-..-...||..|.+-=-+||-|.+|
T Consensus 248 A~~Ls~e~Rd~~~~~AvkLAk~~nY-~nAGTvEFL~d~~~G~FYFIEvNpRiQVEHTvTE~iTGiDiV~aQI~va~G~sL 326 (1169)
T TIGR01235 248 APSLSREVRDEIAEYAVKLAKEVNY-INAGTVEFLVDNDTGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIRVAEGASL 326 (1169)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 8778888999999999999874289-888724885554889377899888000115586467340377789999655746
Q ss_pred C--CCCCC---------------CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCH------------
Q ss_conf 0--13577---------------567777666577677689854420121147766666773100100------------
Q gi|254780439|r 386 D--ELGND---------------ITGGKTPASFEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGE------------ 436 (1162)
Q Consensus 386 ~--ei~~~---------------~~~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GE------------ 436 (1162)
. ++--+ +|+...-.-|-|+--.+-+ |..-.|.-.+|-+---=-|-
T Consensus 327 ~~~~~g~~~Q~~I~t~GyAiQcRvTTEDP~~dF~PdtGri~~------YRSa~G~GvRLD~G~sY~GAiItpYYDsLLVK 400 (1169)
T TIGR01235 327 PSKQLGVPEQEDIKTRGYAIQCRVTTEDPANDFQPDTGRIEV------YRSAGGFGVRLDGGNSYAGAIITPYYDSLLVK 400 (1169)
T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEE------EEECCCCEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 877577886544035014887225445864266889672789------98178431761676641463016752331010
Q ss_pred HHHCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCH
Q ss_conf 222267689999989975037-8767665576676645898999997607982489999999973897889987718898
Q gi|254780439|r 437 VMAIGRTFAESLQKALRGLET-GLTGLDEIHIPSMESDNDPNALRSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDP 515 (1162)
Q Consensus 437 vm~iGr~f~eA~~KAlrsle~-~~~g~~~~~~~~~~~~~~~~~l~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~ 515 (1162)
|.+.+.+|++|..|=.|.|.. -..|.. .+. --|+.-|.||. |
T Consensus 401 ~~~~A~~~~~a~~kM~RaL~EFRIRGvk--------TNi--pFL~~v~~~~k----------F----------------- 443 (1169)
T TIGR01235 401 VSAWASTFEEAAAKMVRALREFRIRGVK--------TNI--PFLLNVLKHPK----------F----------------- 443 (1169)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCC--------CCH--HHHHHHHCCCE----------E-----------------
T ss_conf 0103789899999975420111002211--------253--79999853871----------2-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH----HHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 999999999999998753037602799998653379988999885899999----9988986398479986214324436
Q gi|254780439|r 516 WFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNE----IRKIRHQMGLHPVFKCVDTCAGEFS 591 (1162)
Q Consensus 516 wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~----Vr~~R~~~~i~P~yK~VDtcAgEF~ 591 (1162)
++......-.+.+.++.+.+|+.-=.-+.+-.|.++..+= +....+.+.-.|
T Consensus 444 -----------~~g~Y~T~FID~tP~LF~~~k~~dRA~KLL~YLa~V~VNG~~~~~~~~~kpl~~~p------------- 499 (1169)
T TIGR01235 444 -----------LEGSYDTSFIDTTPELFQFVKSKDRATKLLTYLADVTVNGSSPELKKKLKPLEDKP------------- 499 (1169)
T ss_pred -----------ECCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC-------------
T ss_conf -----------15705687733880552000000157888775502531378785555788600278-------------
Q ss_pred CCCCEEEEECCCCCCC---CCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 6585589720677666---5532235677741899727630201476653189999999996598069960686521123
Q gi|254780439|r 592 SPTSYMYSTYETNFIN---KPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTD 668 (1162)
Q Consensus 592 a~T~Y~YsTY~~e~~~---~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTD 668 (1162)
..|-+|.--..+-.. ....-+.|..+-|=|..--||-. | ++..|+. +.++. ||
T Consensus 500 -~~v~~~~~~~~v~~~~~ekGkkv~~P~~G~kqiL~e~Gp~~------f-------A~~vr~~--k~~LL--------~D 555 (1169)
T TIGR01235 500 -RVVKLDVDQSPVILVAKEKGKKVSEPPRGTKQILDEKGPEG------F-------AKWVREQ--KSVLL--------TD 555 (1169)
T ss_pred -CCCEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCHHH------H-------HHHHHHH--CCCCC--------CC
T ss_conf -99600047886077540258502788851577763028588------9-------9999985--78220--------10
Q ss_pred CCCCC----------EEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEC---CCCHHHHC
Q ss_conf 24586----------379841678899999987485678227998445124668988888759838612---75203310
Q gi|254780439|r 669 YDIAD----------RLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPILGT---QPDSIDLA 735 (1162)
Q Consensus 669 yd~sD----------rLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGt---s~~~Id~a 735 (1162)
--+=| |.| |+..| .+-++-.|..- .-+..||= +....=+.
T Consensus 556 TT~RDAHQSLLATRvRth-------DL~~I-----------------A~~~ah~l~~l---fSLE~WGGATFDVA~RFL~ 608 (1169)
T TIGR01235 556 TTFRDAHQSLLATRVRTH-------DLAKI-----------------APTTAHALPNL---FSLECWGGATFDVAMRFLH 608 (1169)
T ss_pred CCHHHHHHHHHHHHHHHH-------HHHHH-----------------HHHHHHHHHCC---CEEHHCCCHHHHHHHHHCC
T ss_conf 330256676787887788-------66530-----------------12688873033---0002058611678765157
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 28678999888709866854211215665556553697167513444456541255489999999997521013221111
Q gi|254780439|r 736 EDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKR 815 (1162)
Q Consensus 736 EDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~ 815 (1162)
||+=.=-+.|++. .|+- =++=.+.=|+-+||- =|-+.-.+.|++.+..-..
T Consensus 609 EDPWeRL~~lR~~----vPN~---lfQMLLRgANaVGYt----------------nYPDNvv~~Fv~qa~~~Gi------ 659 (1169)
T TIGR01235 609 EDPWERLEDLRKE----VPNI---LFQMLLRGANAVGYT----------------NYPDNVVKKFVKQAAQSGI------ 659 (1169)
T ss_pred CCHHHHHHHHHHH----CCCH---HHHHHHHHHHHHCCC----------------CCCHHHHHHHHHHHHHCCC------
T ss_conf 8837999999854----6852---468887541000024----------------7753489999998884683------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEE----------------------CCCCHHCCCC
Q ss_conf 223333333345577774567022012010010102307984999852----------------------0110215245
Q gi|254780439|r 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGII----------------------EHIEEAGIHS 873 (1162)
Q Consensus 816 ~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gim----------------------EHiE~aGVHS 873 (1162)
-+|.-+..| -|++ ...+=|||+++-+.|+=.+|+ +-+|.||-|
T Consensus 660 -----------D~FRvFDsL--N~l~-~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaH- 724 (1169)
T TIGR01235 660 -----------DIFRVFDSL--NWLE-NLKLGMDAVKEAGKVVEAAICYTGDILDPARKKYDLKYYTNLAEELVKAGAH- 724 (1169)
T ss_pred -----------EEEECCCCC--CCCC-CCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC-
T ss_conf -----------078700111--3321-0201636777509979999752003268889743778899999999970980-
Q ss_pred CCEEEEECCCCCCHHHHH-HHH-HHHHHHHHHCCCCC-CCEEEEEECCCEEEEEEECCCCCCCHHHHHH--HHCCCHHHH
Q ss_conf 762798168668999999-999-99999987413357-6247885128859998524444563045677--739889999
Q gi|254780439|r 874 GDSACSLPSRSLSQQLKD-ELI-SQTKALAGALNVIG-LINVQYAIKDGKIYILEVNPRASRTVPFIAK--AIGFPVAKV 948 (1162)
Q Consensus 874 GDS~~v~PpqsLs~~~~~-~i~-~~t~~ia~~L~v~G-~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSK--atG~pl~~i 948 (1162)
=|-=+... -|+ .+|+-|..+|.=+= -+=|+|=-||- +.-.+.-+.| --|+|.+++
T Consensus 725 ----------IL~iKDMAGlLKP~AAk~L~~ALre~~PD~PiH~HTHDt----------SG~ava~~~aaveAGvDvvDv 784 (1169)
T TIGR01235 725 ----------ILGIKDMAGLLKPAAAKLLIKALREKIPDLPIHLHTHDT----------SGAAVASMLAAVEAGVDVVDV 784 (1169)
T ss_pred ----------EEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCC----------HHHHHHHHHHHHHCCCCEEHH
T ss_conf ----------343010112442899999999997327998568626661----------268999999998758861145
Q ss_pred HHHHHCCCCCCCC-------CCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCC--CCCCCE-EE------------
Q ss_conf 9999859721002-------4666677776668738997203883445999867077--563101-37------------
Q gi|254780439|r 949 AARIIAGESLDAS-------IAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGP--EMRSTG-EV------------ 1006 (1162)
Q Consensus 949 At~v~lG~~L~~~-------~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGp--EMkSTG-EV------------ 1006 (1162)
|...|.|-+=... ..+....| .++--.|+.==+=|...+.--..+-. .|||-- ||
T Consensus 785 Av~smSG~TSQPS~~a~~~aL~G~~~dp---gln~~~v~~ls~YWe~~R~~Ya~FEstt~lKsP~~evY~hE~PGGQytN 861 (1169)
T TIGR01235 785 AVDSMSGLTSQPSLGALVAALEGSERDP---GLNVEDVRELSAYWEEVRKLYAAFESTTDLKSPDSEVYLHEIPGGQYTN 861 (1169)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 6764104500333899999727898988---8898999898788999974421111036788778543335788504467
Q ss_pred -------EEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEE
Q ss_conf -------7741999999999999838879887259999644128999999999998898999938889999987981569
Q gi|254780439|r 1007 -------IGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQK 1079 (1162)
Q Consensus 1007 -------mgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~ 1079 (1162)
.|+|..|.+ ..+|+.-++.-+ |=| +-|.=..|. .-.+| -|+-.|.++..-
T Consensus 862 L~~QA~~lGLg~~w~~-vk~aYr~aN~ll---GDI-vKVTPSSKV-VGDlA-----------------lfMV~n~LT~~d 918 (1169)
T TIGR01235 862 LQFQAKSLGLGDRWEE-VKKAYREANQLL---GDI-VKVTPSSKV-VGDLA-----------------LFMVSNDLTEDD 918 (1169)
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHHHHHHC---CCE-EEECCCCCH-HHHHH-----------------HHHHHHHCCHHH
T ss_conf 9999865483126899-999999987751---983-898378722-65478-----------------764303015687
Q ss_pred EECCCCC--CCC-HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 7505687--810-788986798549996789985231108999999970
Q gi|254780439|r 1080 INKVLEG--RPH-IEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIR 1125 (1162)
Q Consensus 1080 v~k~~e~--~~~-i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr~Ai~~ 1125 (1162)
|....+. -|+ ++|+++ |.|. +|-|.=+ -.+|..++..
T Consensus 919 V~~~~~~l~FP~SVv~~l~-G~iG----qP~gGFP----E~l~~~vLk~ 958 (1169)
T TIGR01235 919 VVEKAEELDFPDSVVEFLK-GDIG----QPHGGFP----EPLRKKVLKG 958 (1169)
T ss_pred HHCCCCCCCCCHHHHHHHC-CCCC----CCCCCCC----HHHHHHHHHC
T ss_conf 3133457787468999833-7778----3348887----2568899608
No 15
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=0 Score=474.00 Aligned_cols=392 Identities=20% Similarity=0.259 Sum_probs=330.3
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
+|||||.++|.| +...+|+++|+|+++|.|+|.+..-+....+||+.| +.| |+.+.|.++.
T Consensus 2 ~~kvLIANRGEI-----------A~Ri~rt~~~lgi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A 70 (447)
T PRK05586 2 FKKILIANRGEI-----------AVRIIRACREMGIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSAT 70 (447)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHH
T ss_conf 754999898799-----------999999999839959999170336785476498998739999565114899999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
+..+.|||||||| +|+|+.-| ++.|+.++|+++++|+.++|+..+++++.+.|+|++|+
T Consensus 71 ~~~g~dAihPGYG---------FLSEna~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg-------- 133 (447)
T PRK05586 71 VLTGAQAIHPGFG---------FLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPG-------- 133 (447)
T ss_pred HHHCCCEEECCCC---------HHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCC--------
T ss_conf 9849989971855---------32238999999998798798959999998538499999999849976568--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
+...+++.++|+++|++||||||+||++++||+||++
T Consensus 134 -------------------------------------------~~~~v~~~~ea~~~a~~iGyPv~lKAa~GGGGrGmri 170 (447)
T PRK05586 134 -------------------------------------------SEGEIENEEEALKIAEEIGYPVMVKASAGGGGRGIRI 170 (447)
T ss_pred -------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf -------------------------------------------6888899999999998629823763056999773699
Q ss_pred CCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 169999999999----8998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|++++||..+++ ++..+|++++++|||||.+|||||+||++|++||+++++.+||+.|++.|+..+++ |+++|+
T Consensus 171 v~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKvIEea--Pap~l~ 248 (447)
T PRK05586 171 VRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEA--PSPVMT 248 (447)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEC--CCCCCC
T ss_conf 899999999999999999982799846887724787179999997079988884064246656886379988--999888
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
++++++|+++|+++++++|| +|+|||||++| .+++|||||||||+----+--.-.||..|.+.--+||.|.+|.-...
T Consensus 249 ~~~r~~m~~~A~~la~~vgY-~gaGTvEFl~d-~~~~fyFlEvNtRlQVEH~VTE~vtGvDLV~~Qi~iA~G~~L~~~q~ 326 (447)
T PRK05586 249 EELRKKMGEIAVKAAKAVNY-KNAGTIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSITQE 326 (447)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEC-CCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999988886060-33324788875-89978999334355556641100037768999999867999997701
Q ss_pred CCC-----------CCCCCCCCCCCCCEEEEEEEECCCCCCCCC--------CCCCCCCCCCC-CHHHHCCCCHHHHHHH
Q ss_conf 756-----------777766657767768985442012114776--------66667731001-0022226768999998
Q gi|254780439|r 391 DIT-----------GGKTPASFEPSIDYIVTKIPRFTFEKFPGS--------DVTLTTSMKSV-GEVMAIGRTFAESLQK 450 (1162)
Q Consensus 391 ~~~-----------~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~--------~~~Lgt~MkS~-GEvm~iGr~f~eA~~K 450 (1162)
++. -......|-|+.-.+ -+|.|..-+++ .....+.--|- +-++..|++.++|+.+
T Consensus 327 ~i~~~GhAIe~Ri~AEdp~~~f~Ps~G~i----~~~~~P~g~gvRvDt~~~~G~~v~~~yDsllaK~I~~g~~R~~Ai~r 402 (447)
T PRK05586 327 DIKINGHAIECRINAEDPENGFMPCPGKI----EELYIPGGLGVRLDSAIYSGYTIPPYYDSMIGKLIVYGKDREEAIQK 402 (447)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEE----EEEECCCCCCEEEECCCCCCCCCCCCCCCHHCEEEEECCCHHHHHHH
T ss_conf 07878569999821457887850587566----58976999988987874587964886462232477988999999999
Q ss_pred HHHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99750378-76766557667664589899999760798
Q gi|254780439|r 451 ALRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 451 Alrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
..|.|..- ..|+ ..+...|...|.+|.
T Consensus 403 l~~aL~~~~i~Gv----------~Tni~~l~~il~~~~ 430 (447)
T PRK05586 403 MKRALGEFIIEGV----------KTNIDFQFIILENEN 430 (447)
T ss_pred HHHHHHCCEEECC----------CCCHHHHHHHHCCHH
T ss_conf 9999843799793----------487999999867930
No 16
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=0 Score=467.30 Aligned_cols=391 Identities=23% Similarity=0.302 Sum_probs=329.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
+|||||.+.|.| +...+|++||+||+||+|+|+++.-+.+..+||+.| ++| |+.+.|.++.
T Consensus 2 ~~kvLIANRGEI-----------A~RiiRt~~elgi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A 70 (449)
T PRK08591 2 FDKILIANRGEI-----------ALRILRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAA 70 (449)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 644889678499-----------999999999849949998685752785288598889958988433304899999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
++.++|||||||| +|+|+.-| ++.|+.|+|+++++|+.++|+..++++|.+.|+|+.|+
T Consensus 71 ~~~g~dAihPGYG---------FLSEna~FA~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpg-------- 133 (449)
T PRK08591 71 EITGADAIHPGYG---------FLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPG-------- 133 (449)
T ss_pred HHHCCCEEECCCC---------HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC--------
T ss_conf 9829998972742---------43258999999998799999929999998769899999999839997888--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
+...+++.++|.++|++|||||||||++++||+||++
T Consensus 134 -------------------------------------------s~~~~~~~~ea~~~a~~iGyPv~iKA~~GGGGrGmrv 170 (449)
T PRK08591 134 -------------------------------------------SDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRV 170 (449)
T ss_pred -------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
T ss_conf -------------------------------------------7665568999999998749966988526898776999
Q ss_pred CCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 169999999999----8998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|++++||.+.++ ++..+|++++++|||+|.++||||+||++|++||+++++.+||+.|+++|+..+++ |++.|+
T Consensus 171 v~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEVQilgD~~Gn~vhl~eRdCSiQRR~QKvIEEa--Pap~l~ 248 (449)
T PRK08591 171 VRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEA--PSPAIT 248 (449)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHCCCEEEEEC--CCCCCC
T ss_conf 856789999999999999973799856787712565367899986389988987477567201461379977--998789
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
++.+++|.++|+++++++|| +|++||+|++| +++|||||||||+-=--+--.-.||..|.+.--++|.|..|+--..
T Consensus 249 ~~~r~~m~~~A~~la~~v~Y-~~aGTvEFL~d--~~~fyFlEmNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L~~~q~ 325 (449)
T PRK08591 249 EELRRKIGEAAVKAAKAIGY-RGAGTIEFLYE--NGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSIKQE 325 (449)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEE--CCEEEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999997496-42103899997--8908999624341245652266507719999999867999997710
Q ss_pred CCCCCC----------CCCCCCCCCCEEEEEEEECCCCCCCCC--CC------CCCCCCCC-CCHHHHCCCCHHHHHHHH
Q ss_conf 756777----------766657767768985442012114776--66------66773100-100222267689999989
Q gi|254780439|r 391 DITGGK----------TPASFEPSIDYIVTKIPRFTFEKFPGS--DV------TLTTSMKS-VGEVMAIGRTFAESLQKA 451 (1162)
Q Consensus 391 ~~~~~~----------~~a~~Ep~ldyv~vK~p~f~f~kf~~~--~~------~Lgt~MkS-~GEvm~iGr~f~eA~~KA 451 (1162)
++.... .+..|-|+.-.+ -+|.+..-+++ |. ...+.--| .+-++..|++.++|+.|.
T Consensus 326 ~i~~~GhAIE~Ri~AEdP~~f~Ps~G~i----~~~~~P~g~gvRvDt~~~~G~~v~~~YDsmlaKlI~~g~~R~~Ai~rl 401 (449)
T PRK08591 326 DIVFRGHAIECRINAEDPKNFMPSPGKI----TRYHPPGGPGVRVDSHVYTGYTIPPYYDSMIGKLIVHGETREEAIARM 401 (449)
T ss_pred CCCCCCCCHHEEECCCCCCCCCCCCEEE----EEEECCCCCCEEEECCCCCCCEECCCCCCHHCEEEEECCCHHHHHHHH
T ss_conf 0675761121010135845467887278----799748999889958815689848874553203889789999999999
Q ss_pred HHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9750378-76766557667664589899999760798
Q gi|254780439|r 452 LRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 452 lrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
.|.|..- ..|+ ..+...|...|.+|.
T Consensus 402 ~~AL~e~~I~Gv----------~TN~~~l~~il~~~~ 428 (449)
T PRK08591 402 KRALSEFVIDGI----------KTTIPLHLRLLNDPN 428 (449)
T ss_pred HHHHHCCEEECC----------CCCHHHHHHHHCCHH
T ss_conf 999736699796----------686999999967921
No 17
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=0 Score=463.53 Aligned_cols=391 Identities=21% Similarity=0.324 Sum_probs=328.0
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC------CCHHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337------99999999998
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP------ITPEVVAKIIE 79 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP------lt~e~v~~Ii~ 79 (1162)
+|||||.+.|.| +..++|+|||+||+||.|+|....-+..-.+||+.| +++ |+.+.|.++.+
T Consensus 2 ~~kvLIANRGEI-----------A~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea~~ig~~~~~sYln~~~Ii~~A~ 70 (471)
T PRK07178 2 IKKILIANRGEI-----------AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAHSIGADPLAGYLNPRKLVNLAV 70 (471)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEECCCCHHHHHCCHHHHHHHHH
T ss_conf 760899778699-----------999999999839948999083756683688488888718872665449999999999
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 62898899758870268888998875962----88287571499899986058899999999878988862000234433
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
..+.|||||||| +|+|+.-| ++.|+.|+|+++++|++++|+..+++++.+.|+|+.|+
T Consensus 71 ~~g~dAiHPGYG---------FLSEn~~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pg--------- 132 (471)
T PRK07178 71 ETGCDALHPGYG---------FLSENAELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPG--------- 132 (471)
T ss_pred HHCCCEEECCCC---------HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC---------
T ss_conf 969999977833---------31159899999997899899959999998748398999999869982689---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 33323333333444444443333222111111233444444455444899999999987199699941326786645111
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIA 235 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv 235 (1162)
+.+.+++.++++++|++||||||+||++++||+||++|
T Consensus 133 ------------------------------------------s~~~v~~~eea~~~A~~iGyPV~lKAa~GGGGrGmrvv 170 (471)
T PRK07178 133 ------------------------------------------SEGNLADIDEALAEAERIGYPVMLKATSGGGGRGIRRC 170 (471)
T ss_pred ------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE
T ss_conf ------------------------------------------68865669999999986698158632026876644997
Q ss_pred CCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 6999999999----989985799827986644997899999997289988999630000001000010134337322898
Q gi|254780439|r 236 YNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTD 311 (1162)
Q Consensus 236 ~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d 311 (1162)
++++||.+.+ .++..+|++++++|||+|.+|||||+||++|++||+++++.+||+.|++.|+..+++ |++.|++
T Consensus 171 ~~~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RHIEVQilgD~~Gnvihl~eRdCSiQRr~QKvIEea--Pa~~l~~ 248 (471)
T PRK07178 171 NSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSFGNVVHLFERDCSIQRRNQKLIEIA--PSPQLTP 248 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEC--CCCCCCH
T ss_conf 66056889999999999984499736876604676289999998078988888412346510787327876--9998889
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999871834576468999955898499985044431035788876346147677764134461013577
Q gi|254780439|r 312 KEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGND 391 (1162)
Q Consensus 312 ~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~ 391 (1162)
+.+++|+++|+++++++|| +|++||||+++ +++|||||||||+----+--...||..|.+.--+||.|..|.-...+
T Consensus 249 ~~r~~l~~~A~~la~~v~Y-~gaGTvEFlv~--~~~~yFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L~~~q~~ 325 (471)
T PRK07178 249 EQRAYIGDLAVRAAKAVGY-ENAGTVEFLLA--DGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPLSVKQED 325 (471)
T ss_pred HHHHHHHHHHHHHHHHCCC-CEEEEEEEEEE--CCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999998899999996486-50126999986--79479983246665554213666167589999998679978831024
Q ss_pred CCCC-----------CCCCCCCCCCCEEEEEEEECCCCCCCCC--C------CCCCCCCCC-CCHHHHCCCCHHHHHHHH
Q ss_conf 5677-----------7766657767768985442012114776--6------666773100-100222267689999989
Q gi|254780439|r 392 ITGG-----------KTPASFEPSIDYIVTKIPRFTFEKFPGS--D------VTLTTSMKS-VGEVMAIGRTFAESLQKA 451 (1162)
Q Consensus 392 ~~~~-----------~~~a~~Ep~ldyv~vK~p~f~f~kf~~~--~------~~Lgt~MkS-~GEvm~iGr~f~eA~~KA 451 (1162)
+... .....|-|+.--+ -+|.+..-+++ | ....+.--| .+-++..|.++++|+.|.
T Consensus 326 i~~~GhAIe~Ri~AEDp~~~F~Ps~G~i----~~~~~P~g~gvR~Dt~~~~G~~v~~~yDsmlaKli~~g~~R~~Ai~rl 401 (471)
T PRK07178 326 IQHRGFALQFRINAEDPKNNFLPSFGKI----TRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCLKLIVWALTWEEALDRG 401 (471)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCEE----EEEECCCCCCEEEECCCCCCCEECCCCCCHHHHHEEECCCHHHHHHHH
T ss_conf 4558858999985137766865687257----789769999889866776889618874425361048889999999999
Q ss_pred HHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9750378-76766557667664589899999760798
Q gi|254780439|r 452 LRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 452 lrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
.|.|..- ..|. ..+...|...|.+|.
T Consensus 402 ~~aL~e~~I~Gv----------~Tni~~l~~il~~~~ 428 (471)
T PRK07178 402 LRALDDMRVQGV----------KTTAPYYQEILRNPE 428 (471)
T ss_pred HHHHHCCEEECC----------CCCHHHHHHHHCCHH
T ss_conf 998626599794----------686999999867811
No 18
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=0 Score=466.52 Aligned_cols=391 Identities=22% Similarity=0.312 Sum_probs=329.7
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
+|||||.+.|.| +...+|+|||+|+++|.|+|.+..-+....+||+.| ++| |+.+.|.++.
T Consensus 2 ~~kvLIANRGEI-----------A~Ri~rt~~elgi~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A 70 (449)
T PRK06111 2 FQKVLIANRGEI-----------AVRIIRTCQKLGIRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIA 70 (449)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHH
T ss_conf 761899878799-----------999999999849979999173645683587498988808997454333999999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
++...|||||||| +|+|+.-| ++.|+.|+|+++++|+.++|+..+++++.+.|+|+.|+
T Consensus 71 ~~~g~dAIHPGYG---------FLSEna~FA~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG-------- 133 (449)
T PRK06111 71 KKTGAEAIHPGYG---------LLSENASFAERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPG-------- 133 (449)
T ss_pred HHHCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCC--------
T ss_conf 9839999977987---------31169899999998899899929999998648699999999839985578--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
+...+++.+++.++|++||||||+||++++||+||++
T Consensus 134 -------------------------------------------~~~~~~~~~ea~~~a~~iGyPvliKAa~GGGGrGmri 170 (449)
T PRK06111 134 -------------------------------------------ITTALEDAEEAIAIARQIGYPVMLKASAGGGGIGMQL 170 (449)
T ss_pred -------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf -------------------------------------------6777899999999998659802662035898672089
Q ss_pred CCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 16999999999----98998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|++++||.+++ ++|..+|++++++|||||.+|+|||+||++|++||+++++.+||+.|+++|+..+++ |++.|+
T Consensus 171 v~~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKviEea--Pap~l~ 248 (449)
T PRK06111 171 VETEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEEA--PSPFLD 248 (449)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEC--CCCCCC
T ss_conf 579999999999999999986399602554413577337999997068888883051226635774169978--999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
++.+++|.++|.++++++|| .|++||||.+| .+++|||||||||+-.--+--...||..|.+.--++|.|..|.--..
T Consensus 249 ~~~r~~~~~~A~~la~~v~Y-~g~gTvEFl~d-~~~~fyFlEvNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L~~~q~ 326 (449)
T PRK06111 249 EETRKAMGEAAVQAAKAIGY-TNAGTIEFLVD-NQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSFTQD 326 (449)
T ss_pred HHHHHHHHHHHHHHHHHCCE-EEEEEEEEEEE-CCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999999887171-02468999994-89868999534354446640455538848999999867998998966
Q ss_pred CC-----------CCCCCCCCCCCCCCEEEEEEEECCCCCCCCC--C------CCCCCCCCC-CCHHHHCCCCHHHHHHH
Q ss_conf 75-----------6777766657767768985442012114776--6------666773100-10022226768999998
Q gi|254780439|r 391 DI-----------TGGKTPASFEPSIDYIVTKIPRFTFEKFPGS--D------VTLTTSMKS-VGEVMAIGRTFAESLQK 450 (1162)
Q Consensus 391 ~~-----------~~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~--~------~~Lgt~MkS-~GEvm~iGr~f~eA~~K 450 (1162)
++ +-.. +..|-|+.-. +-+|.+..-+++ | ....+.--| .+-++..|++.++|+.|
T Consensus 327 ~i~~~GhAIe~Ri~AEd-p~~f~Ps~G~----i~~~~~P~g~gvRvDs~~~~G~~v~~~yDsmlaKlI~~g~~R~~Ai~r 401 (449)
T PRK06111 327 DIKRSGHAIEVRIYAED-PKTFFPSPGK----ITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKVIAHGETREEAIAR 401 (449)
T ss_pred HCCCCCEEHHHHHHCCC-CCCCCCCCEE----EEEEECCCCCCEEEECCCCCCCEECCCCCCHHHEEEEECCCHHHHHHH
T ss_conf 66856120555551378-5657899869----999984899988885366685970887565332567987999999999
Q ss_pred HHHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99750378-76766557667664589899999760798
Q gi|254780439|r 451 ALRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPC 487 (1162)
Q Consensus 451 Alrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~ 487 (1162)
..|.|..- ..|+ ..+...|...|.+|.
T Consensus 402 l~~aL~e~~I~Gv----------~Tni~~l~~il~~~~ 429 (449)
T PRK06111 402 LHDALEELKVEGI----------KTNIPLLLQILEDPV 429 (449)
T ss_pred HHHHHHCCEEECC----------CCCHHHHHHHHCCHH
T ss_conf 9999851699894----------385999999858843
No 19
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=0 Score=457.20 Aligned_cols=374 Identities=24% Similarity=0.321 Sum_probs=319.7
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-EC-C-------CCHHHHH
Q ss_conf 6556999976775420505466688899999999879789997487650107845131004-33-7-------9999999
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TE-P-------ITPEVVA 75 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~e-P-------lt~e~v~ 75 (1162)
..+|||||.++|.| +...+|||+|+||+||.|+|....-+.+...||+.| +. + |+.+.|.
T Consensus 3 ~~~~kvLiANRGEI-----------A~Ri~Ra~~elgi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii 71 (1147)
T PRK12999 3 KKIKKVLVANRGEI-----------AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEII 71 (1147)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHH
T ss_conf 76878999668199-----------9999999998399589997846457825885885677289997131112999999
Q ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999862898899758870268888998875962----8828757149989998605889999999987898886200023
Q gi|254780439|r 76 KIIEKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA 151 (1162)
Q Consensus 76 ~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~ 151 (1162)
++.++.+.|||||||| +|+|+.-| ++.|+.|+|+++++|+.++|+...++++.+.|+|+.|+
T Consensus 72 ~~A~~~~~dAiHPGYG---------FLSEn~~Fa~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg----- 137 (1147)
T PRK12999 72 RVAKQAGVDAIHPGYG---------FLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPG----- 137 (1147)
T ss_pred HHHHHHCCCEEECCCC---------HHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCC-----
T ss_conf 9999949899977962---------20079999999998789998949999998559999999999839898889-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 44333332333333344444444333322211111123344444445544489999999998719969994132678664
Q gi|254780439|r 152 TDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTG 231 (1162)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G 231 (1162)
+...+++.++|.++|++||||||+|+++++||+|
T Consensus 138 ----------------------------------------------s~~~~~~~~~~~~~a~~iGyPv~iKA~~GGGGrG 171 (1147)
T PRK12999 138 ----------------------------------------------TEGPIDDLEEALEFAEEIGYPLMLKASAGGGGRG 171 (1147)
T ss_pred ----------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf ----------------------------------------------8998899999999998719978999777898051
Q ss_pred CCCCCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCC
Q ss_conf 511169999999999----8998579982798664499789999999728998899963000000100001013433732
Q gi|254780439|r 232 GGIAYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPAL 307 (1162)
Q Consensus 232 ~~iv~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~q 307 (1162)
|++|++++||.+.++ +|.++|+++.|+|||+|.++||||+||++|++||+++++.+||+.|+++|+..+++ |+.
T Consensus 172 mrvv~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rHiEvQilgD~~Gnvvhl~eRdCSiQRR~QKviEea--Pap 249 (1147)
T PRK12999 172 MRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIA--PAP 249 (1147)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCHHHCCCEEEEEC--CCC
T ss_conf 489589899999999999999983699756885503678647999996288988871476564322351357866--899
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 28988999999999999987183457646899995589849998504443103578887634614767776413446101
Q gi|254780439|r 308 TLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE 387 (1162)
Q Consensus 308 TL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~e 387 (1162)
.|+++.+++|.++|+++++++|| .|+++|+|.+|+ +++|||||||||+-=--+--.-.||..|.+.--+||-|.+|.+
T Consensus 250 ~l~~~~r~~l~~~A~~~a~~v~Y-~~aGTvEFL~d~-~~~fyFiE~N~RlQVEH~VTE~vtGiDlV~~Qi~iA~G~~L~~ 327 (1147)
T PRK12999 250 GLSPELREEICEAAVKLARAVGY-VNAGTVEFLVDA-DGNFYFIEVNPRIQVEHTVTEMVTGIDIVQSQILIAEGATLGD 327 (1147)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEECC-CCCEEEEEEECCCCCCCCCHHHEECCCHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999997697-643227899838-8878999866565645653021015508999999857997566
Q ss_pred CCC------C-----------CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC--C-------CCCCCCCCC-CCHHHHC
Q ss_conf 357------7-----------56777766657767768985442012114776--6-------666773100-1002222
Q gi|254780439|r 388 LGN------D-----------ITGGKTPASFEPSIDYIVTKIPRFTFEKFPGS--D-------VTLTTSMKS-VGEVMAI 440 (1162)
Q Consensus 388 i~~------~-----------~~~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~--~-------~~Lgt~MkS-~GEvm~i 440 (1162)
... + ++.......|-|+--.+ ..-+|| .-+|+ | ....+.--| ..-++..
T Consensus 328 ~~~~~~~Q~~i~~~G~Aie~Ri~aEdp~~~F~P~~G~i--~~~~~p--~G~gvR~D~g~~~~G~~v~p~yDsllaK~i~~ 403 (1147)
T PRK12999 328 LEVGIPSQEDIRLRGHAIQCRITTEDPANNFMPDTGRI--TAYRSP--GGFGVRLDGGNAYAGAVITPYYDSLLVKLTTW 403 (1147)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEE--EEEECC--CCCCEEECCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 76787754467766489999986117752567887740--378469--99998967786767896688757042522266
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 67689999989975037
Q gi|254780439|r 441 GRTFAESLQKALRGLET 457 (1162)
Q Consensus 441 Gr~f~eA~~KAlrsle~ 457 (1162)
|+++++|+.|..|.|..
T Consensus 404 g~~r~~ai~r~~raL~e 420 (1147)
T PRK12999 404 GRTFEEAIARMDRALRE 420 (1147)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 69899999999998642
No 20
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00 E-value=0 Score=471.78 Aligned_cols=373 Identities=24% Similarity=0.316 Sum_probs=320.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCC-EEECC-------CCHHHHHHHH
Q ss_conf 569999767754205054666888999999998797899974876501078451310-04337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADA-TYTEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~-vY~eP-------lt~e~v~~Ii 78 (1162)
++||||.++|.| +...+|||+|+||+||+|+|..+-=..+-.+||+ ++|.| |+..+|....
T Consensus 2 ~~K~lIANRGEI-----------A~RIiRAC~ElGi~TVAVyS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA 70 (451)
T TIGR00514 2 LDKILIANRGEI-----------ALRIIRACKELGIATVAVYSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAA 70 (451)
T ss_pred CCEEEEECCHHH-----------HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf 854899526067-----------889999888649863986004413323434302530068622112441158899988
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
+....|||||||| ||+||--| ++.|+.|+|+++++|..|+|+...+++|+++|+|+.|
T Consensus 71 ~~tG~~AiHPGYG---------FLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VP--------- 132 (451)
T TIGR00514 71 EITGADAIHPGYG---------FLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVP--------- 132 (451)
T ss_pred HHCCCCEECCCCC---------HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEC---------
T ss_conf 7748807628877---------3443124788987388266678712011268868999999748876623---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 3333233333334444444433332221111112334444444554-448999999999871996999413267866451
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRY-ICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGG 233 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~ 233 (1162)
||++ .+++++|++..|++||||||||++.++||||||
T Consensus 133 ------------------------------------------GS~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR 170 (451)
T TIGR00514 133 ------------------------------------------GSDGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMR 170 (451)
T ss_pred ------------------------------------------CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEE
T ss_conf ------------------------------------------88886310278899999747896899962589972258
Q ss_pred CCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 116999999999----9899857998279866449978999999972899889996300000010000101343373228
Q gi|254780439|r 234 IAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTL 309 (1162)
Q Consensus 234 iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL 309 (1162)
+|..++||.+.+ .+|.++|.+..|||||||++++|||+||+.|++||+|++++++|+-|++.|+.-+++ ||..|
T Consensus 171 ~vR~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~~GN~vyLgERDCSiQRR~QKllEEa--PsP~L 248 (451)
T TIGR00514 171 VVREEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQVLADKYGNVVYLGERDCSIQRRNQKLLEEA--PSPAL 248 (451)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCCHHCCCCCEEEEC--CCCCC
T ss_conf 8628689999999999999740287962786333699407999875178887897121462000465446546--88877
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCE-EEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCC-
Q ss_conf 98899999999999998718345764689999558984-9998504443103578887634614767776413446101-
Q gi|254780439|r 310 TDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGK-MVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE- 387 (1162)
Q Consensus 310 ~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~-~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~e- 387 (1162)
+.+.++.|.++|.+.++.+|| .|++||+|++| ++++ |||||||+|.-==-|.-...||..|.+-=-++|-|..|.=
T Consensus 249 t~ElR~~~G~~Av~aA~~iGY-~GaGTvEFLld-~~~~rFYFmEMNTRIQVEHPVTEmvtGvDL~keQirvA~G~~L~~k 326 (451)
T TIGR00514 249 TSELREKMGDAAVKAAKSIGY-TGAGTVEFLLD-KNGQRFYFMEMNTRIQVEHPVTEMVTGVDLIKEQIRVAAGEKLSLK 326 (451)
T ss_pred CHHHHHHHHHHHHHHHHHCCC-EECCEEEEEEE-CCCCEEEEEEECCEEEEEECCEEEEECHHHHHHHHHHHCCCCCCCC
T ss_conf 889999998999999986498-00351688862-5887357765176021110320146002578889987378956643
Q ss_pred ---C-------CCCCCCCCCCCCCCCCCCEEEEEEE------ECCCCCCCCCCCCCCCCCCC-CCHHHHCCCCHHHHHHH
Q ss_conf ---3-------5775677776665776776898544------20121147766666773100-10022226768999998
Q gi|254780439|r 388 ---L-------GNDITGGKTPASFEPSIDYIVTKIP------RFTFEKFPGSDVTLTTSMKS-VGEVMAIGRTFAESLQK 450 (1162)
Q Consensus 388 ---i-------~~~~~~~~~~a~~Ep~ldyv~vK~p------~f~f~kf~~~~~~Lgt~MkS-~GEvm~iGr~f~eA~~K 450 (1162)
| .-.+.-.....-|-|+.-.+--=.| ||+=. -+.++...|-=-| .|-++..|.|=++|...
T Consensus 327 Qe~v~~~GHaieCRINAEDP~~~F~PsPG~i~~ylpPGG~gVR~DSh--~Y~gY~iPPyYDSmIaKlI~~G~~R~~AI~r 404 (451)
T TIGR00514 327 QEDVKLRGHAIECRINAEDPIKNFLPSPGRITSYLPPGGPGVRVDSH--VYSGYTIPPYYDSMIAKLITYGKTREEAIAR 404 (451)
T ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE--ECCCCCCCCCCHHCCEEEEECCCCHHHHHHH
T ss_conf 11479998899865145587877868885015546879752201003--4487876984020201246405898899999
Q ss_pred HHHHCC
Q ss_conf 997503
Q gi|254780439|r 451 ALRGLE 456 (1162)
Q Consensus 451 Alrsle 456 (1162)
==|.|.
T Consensus 405 MKrAL~ 410 (451)
T TIGR00514 405 MKRALS 410 (451)
T ss_pred HHHHHH
T ss_conf 988754
No 21
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=0 Score=458.35 Aligned_cols=423 Identities=21% Similarity=0.299 Sum_probs=331.5
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE--------ECCHHHHHHHHH
Q ss_conf 418997276302014766531899999999965980699606865211232458637984--------167889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE--------SLTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE--------plt~E~V~~I~~ 690 (1162)
+||||---|-+ .++.++++|++|++||.||+||.+.|++...+|..|+- -|..+.|+++++
T Consensus 3 ~kvLIANRGEI-----------A~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~ 71 (497)
T PRK08654 3 KKILIANRGEI-----------AIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAK 71 (497)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 60899878799-----------9999999998599399988837854899788898998489883212168999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 7485678227998445124668--98888875983861275203310286789998887098668542--1121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea~~ 766 (1162)
..+.+++++|+ |....| ++..|+++|+.++|+++++|+.++||..|.+++.++|+|.++|. .+++.+|+++
T Consensus 72 ~~g~dAIhPGY-----GFLSEn~~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~ 146 (497)
T PRK08654 72 KAGAEAIHPGY-----GFLSENPKFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKE 146 (497)
T ss_pred HHCCCEEECCH-----HHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 80999995777-----6755489999999987999999399999986588999999998099868997566799999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|++|||||||||||++||+||++|++++||++++..+.. +....+++.+|+|||||++|+|+
T Consensus 147 ~A~~IGyPV~iKAs~GGGGrGmriV~~~~eL~~~~~~a~~-----------------eA~~~fgd~~v~iEk~i~~~RHI 209 (497)
T PRK08654 147 VAEEIGYPVIIKASAGGGGIGMRVVYNEEELEEAIESTQS-----------------IAQSAFGDSTVFIEKYLEKPRHI 209 (497)
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCCCEEE
T ss_conf 9986498458765268888865899602568999999999-----------------98874599845798841555378
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 101023079-8499985201102152457627981686689999999999999998741335762478851288599985
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILE 925 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIE 925 (1162)
||++++|+. ++++. .|.-+....|.++.+...|+++|+++++++|++++.+++++++|+|++||||+++++++|+||
T Consensus 210 EVQvl~D~~Gnvihl--geRdCSiQRr~QKvIEeaPap~l~~~~r~~m~~~Av~la~~vgY~gaGTVEFl~d~g~fyFlE 287 (497)
T PRK08654 210 EIQVLADKHGNVIHL--GDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLE 287 (497)
T ss_pred EEEEEEECCCCEEEE--CCEECCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCEEEEEEECCEEEEEE
T ss_conf 999998447978671--460234362686369978999898899999999999988873430233279987488399996
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEE
Q ss_conf 24444563045677739889999999985972100246666777766687389972038834459998670775631013
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGE 1005 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGE 1005 (1162)
||||.|+++|.++++||+||++.+.+++.|++|+..+......+++.+.+.++ ..|.=.|..-||.=..+-+- .|.
T Consensus 288 mNtRlQVEHpVTE~vTGiDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIe~Ri~A-EdP~~~F~Ps~G~i~~~~~P---~g~ 363 (497)
T PRK08654 288 MNTRLQVEHPITEMVTGIDIVKEQIKIAAGEKLSFKQEDITIRGHAIECRINA-EDPLNDFAPSPGKIKRYRSP---GGP 363 (497)
T ss_pred EECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC-CCCCCCCCCCCCEEEEEECC---CCC
T ss_conf 12442245542166608719999999867998891003777751399998103-58887864587366079759---999
Q ss_pred EEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHHHC------
Q ss_conf 77741999999999999838879887-----25999964412899999-9999998898999938889999987------
Q gi|254780439|r 1006 VIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLESH------ 1073 (1162)
Q Consensus 1006 Vmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~~~------ 1073 (1162)
-.-++.. ...|..+|.. ++++ +++.|+.+.+. +.+.|. .|.|..-.-+-.||..-
T Consensus 364 gvRvD~~---------v~~G~~v~~~yDsmlaKli--~~g~~R~~Ai~r~~rAL~--e~~I~Gv~Tni~~l~~il~~~~F 430 (497)
T PRK08654 364 GVRVDSG---------VHMGYTIPPYYDSMISKLI--VWGRTREEAIARMKRALY--EYIILGVKTNIPFHKAVMRNPNF 430 (497)
T ss_pred CEEEECC---------CCCCCCCCCCCCCHHCEEE--EECCCHHHHHHHHHHHHH--CCEEECCCCCHHHHHHHHCCCCE
T ss_conf 8899645---------6468973886543330367--988999999999999985--46998954879999998579020
Q ss_pred ---CCEEEEEECCCCCCCCHHHHHHCC
Q ss_conf ---981569750568781078898679
Q gi|254780439|r 1074 ---GLETQKINKVLEGRPHIEDAISNR 1097 (1162)
Q Consensus 1074 ---Gi~~~~v~k~~e~~~~i~d~i~~~ 1097 (1162)
.+.+..+ |..|++++.+++.
T Consensus 431 ~~g~~~T~fl----e~~~~~~~~~~~~ 453 (497)
T PRK08654 431 IRGNLHTHFI----EELENILEAMKRY 453 (497)
T ss_pred ECCCCCCHHH----HCCHHHHHHHHHH
T ss_conf 0799734267----4488899999999
No 22
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=0 Score=445.50 Aligned_cols=417 Identities=20% Similarity=0.276 Sum_probs=338.1
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC------CCHHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337------99999999998
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP------ITPEVVAKIIE 79 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP------lt~e~v~~Ii~ 79 (1162)
+|||||.+.|.| +...+|++||+||++|.|+|.+..-+....+||+.| +++ |+.+.|.++.+
T Consensus 2 ~~kvLIANRGEI-----------A~Riirt~relgi~tVavys~~D~~s~hv~~Adea~~lg~~~~~sYLn~~~Ii~~A~ 70 (478)
T PRK08463 2 IHKILIANRGEI-----------AVRIIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAK 70 (478)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCCHHHHCCEEEECCCCHHHHHCCHHHHHHHHH
T ss_conf 761789668699-----------999999999839978999785765783477578766528873453069999999999
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 62898899758870268888998875962----88287571499899986058899999999878988862000234433
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
..+.|||||||| +|+|+.-| ++.|+.|+|+++++|+.++|+..++++|.+.|+|+.|+....
T Consensus 71 ~~gadAiHPGYG---------FLSEna~FA~~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~----- 136 (478)
T PRK08463 71 ACGADAIHPGYG---------FLSENYEFAKAVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKL----- 136 (478)
T ss_pred HHCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----
T ss_conf 849999936876---------234699999999978998999499999998648999999998399846676778-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 33323333333444444443333222111111233444444455444899999999987199699941326786645111
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIA 235 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv 235 (1162)
..++.+++.++|++||||||+||++++||+||++|
T Consensus 137 ---------------------------------------------~~~~~~~~~~~a~~iGyPv~lKA~~GGGGrGmrvv 171 (478)
T PRK08463 137 ---------------------------------------------NSESMEEIKIFARKIGYPVILKASGGGGGRGIRVV 171 (478)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
T ss_conf ---------------------------------------------87679999999986598047840359998711785
Q ss_pred CCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 69999999999----89985799827986644997899999997289988999630000001000010134337322898
Q gi|254780439|r 236 YNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTD 311 (1162)
Q Consensus 236 ~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d 311 (1162)
++++||.+.++ ++...|++++|+|||+|.+++|||+||++|++||+++++.+||+.|+++|+..+++ |++.|++
T Consensus 172 ~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHiEVQvlgD~~Gnvi~l~eRdCSiQRr~QKviEea--Pap~l~~ 249 (478)
T PRK08463 172 WKEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIA--PCPGISD 249 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEC--CCCCCCH
T ss_conf 57899999999999999984699854788750245178999986179978896305134334675168966--9998788
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999871834576468999955898499985044431035788876346147677764134461013577
Q gi|254780439|r 312 KEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGND 391 (1162)
Q Consensus 312 ~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~ 391 (1162)
+.+++|.++|.++++++|| .|++||+|.+| ++++|||||||||+----+--.-.||..|.+.--+||.|..|+--..+
T Consensus 250 ~~r~~m~~~A~~la~~v~Y-~~aGTvEFL~d-~~~~fyFlEmNtRlQVEHpVTE~vTGvDLV~~Qi~iA~G~~L~~~q~~ 327 (478)
T PRK08463 250 NLRKTMGVTAVAAAKAVGY-TNAGTIEFLLD-DYNNFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDLEQSD 327 (478)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCEEEEEEC-CCCCEEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999998899876663051-66533898883-899789996075545566541100388689999998679988854003
Q ss_pred CCCCCC-----------CCCCCCCCCEEEEEEEECCCCCCCCC--C------CCCCCCCCC-CCHHHHCCCCHHHHHHHH
Q ss_conf 567777-----------66657767768985442012114776--6------666773100-100222267689999989
Q gi|254780439|r 392 ITGGKT-----------PASFEPSIDYIVTKIPRFTFEKFPGS--D------VTLTTSMKS-VGEVMAIGRTFAESLQKA 451 (1162)
Q Consensus 392 ~~~~~~-----------~a~~Ep~ldyv~vK~p~f~f~kf~~~--~------~~Lgt~MkS-~GEvm~iGr~f~eA~~KA 451 (1162)
+....+ ...|-|+.--+. .|-+..-+++ | ....+---| .+-++..|+++++|+.|.
T Consensus 328 i~~~GhAIE~RI~AEdp~~~F~Ps~G~i~----~~~~p~g~gvRvDs~~~~G~~v~~~yDsmiaKlI~~g~~R~~Ai~rl 403 (478)
T PRK08463 328 IKPRGFAIEARITAENVWKNFIPSPGKIT----GYYPALGPSVRVDSHIYKDYTIPPFYDSMLAKLIVKATSYDLAVNKL 403 (478)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCEEEE----EEECCCCCCEEEECCCCCCCCCCCCCCHHHCEEEEECCCHHHHHHHH
T ss_conf 46674599999851477667465874887----89728999989808867869808975704534889889999999999
Q ss_pred HHHCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH-HHHHHHHHHHH
Q ss_conf 9750378-767665576676645898999997607982489999999973897889987718898999-99999999999
Q gi|254780439|r 452 LRGLETG-LTGLDEIHIPSMESDNDPNALRSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFI-QQIKMIVDVEH 529 (1162)
Q Consensus 452 lrsle~~-~~g~~~~~~~~~~~~~~~~~l~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl-~~i~~iv~~e~ 529 (1162)
.|.|..- ..|. ..+...|...|.+|. |+.| .+|--|| +.+.++++-.+
T Consensus 404 ~~AL~e~~I~Gv----------~Tni~~l~~il~~~~----------F~~g----------~~~T~fle~~~~el~~~~~ 453 (478)
T PRK08463 404 ERALKEFTIEGV----------RTTIPFLIAISKTRE----------FRRG----------YFDTSYIETHMQELLEKTE 453 (478)
T ss_pred HHHHHCCEEECC----------CCCHHHHHHHHCCCC----------EECC----------CCCCHHHHHHHHHHCCCCC
T ss_conf 999726699895----------585999999867914----------2279----------9621277640786567755
Q ss_pred HH
Q ss_conf 87
Q gi|254780439|r 530 RI 531 (1162)
Q Consensus 530 ~l 531 (1162)
..
T Consensus 454 ~~ 455 (478)
T PRK08463 454 DR 455 (478)
T ss_pred CC
T ss_conf 54
No 23
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=0 Score=439.56 Aligned_cols=667 Identities=21% Similarity=0.257 Sum_probs=424.9
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEE-----CC----CCHHHH
Q ss_conf 665569999767754205054666888999999998797899974876501078451310043-----37----999999
Q gi|254780439|r 4 RQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYT-----EP----ITPEVV 74 (1162)
Q Consensus 4 ~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~-----eP----lt~e~v 74 (1162)
-..||||||.+.|.|-| .+.||+.|+|++||.|+|+..+.|.+.-.||+.|. .| |..+-|
T Consensus 4 ~~~~~KvLVANRgEIAI-----------RvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeI 72 (1149)
T COG1038 4 GEKIKKVLVANRGEIAI-----------RVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEI 72 (1149)
T ss_pred HHHHHEEEEECCCHHHH-----------HHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHH
T ss_conf 33102025504533669-----------9999888608648998514454304430355106606788726874329999
Q ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999862898899758870268888998875962----882875714998999860588999999998789888620002
Q gi|254780439|r 75 AKIIEKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 75 ~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
.+|.++.+.|||||+|| +|+|+.-| .+.||.|+|++++.+++.+|+...+.+..+.|+|+.|+
T Consensus 73 I~iAk~~gaDaIhPGYG---------fLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipg---- 139 (1149)
T COG1038 73 IRIAKRSGADAIHPGYG---------FLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPG---- 139 (1149)
T ss_pred HHHHHHCCCCEECCCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCC----
T ss_conf 99999708873137843---------24479899999997597896888799988442888999999759985569----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 34433333233333334444444433332221111112334444444554448999999999871996999413267866
Q gi|254780439|r 151 ATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGT 230 (1162)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~ 230 (1162)
....+.+++++.++|+++|||||||++.++|||
T Consensus 140 -----------------------------------------------t~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGR 172 (1149)
T COG1038 140 -----------------------------------------------TDGPIETIEEALEFAEEYGYPVMIKAAAGGGGR 172 (1149)
T ss_pred -----------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf -----------------------------------------------999821299999999866985899971479866
Q ss_pred CCCCCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 451116999999999----9899857998279866449978999999972899889996300000010000101343373
Q gi|254780439|r 231 GGGIAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPA 306 (1162)
Q Consensus 231 G~~iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~ 306 (1162)
|||++.++++|.+.+ ++|.++|++++|+|||++.++||||+|++.|++||++|+.+++|+.|+++|+..++ ||+
T Consensus 173 GMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~--APa 250 (1149)
T COG1038 173 GMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEV--APA 250 (1149)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCEEEEE--CCC
T ss_conf 526625888999999998899997418980665655248652689986057787888862355331014403785--688
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 22898899999999999998718345764689999558984999850444310357888763461476777641344610
Q gi|254780439|r 307 LTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLD 386 (1162)
Q Consensus 307 qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ 386 (1162)
+.|+.+.+|+|+++|+||+|++|| +|+++|+|.+| .+++|||||||||+----..-...||..|.+---.||-|++|.
T Consensus 251 ~~L~~~~R~~ic~~Avkla~~~~Y-~~AGTvEFLvd-~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~ 328 (1149)
T COG1038 251 PYLSPELRDEICDDAVKLARNIGY-INAGTVEFLVD-EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLH 328 (1149)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEC-CCCCEEEEEECCCEEEEEEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf 889999999999999999997397-65664788873-8886899995473456776455441216788789885356568
Q ss_pred --CCCCCC---------------CCCCCCCCCCCCCCEEEE-EEEECCCCCCCCCCCCCCCCCCCCC-----HHHHCCCC
Q ss_conf --135775---------------677776665776776898-5442012114776666677310010-----02222676
Q gi|254780439|r 387 --ELGNDI---------------TGGKTPASFEPSIDYIVT-KIPRFTFEKFPGSDVTLTTSMKSVG-----EVMAIGRT 443 (1162)
Q Consensus 387 --ei~~~~---------------~~~~~~a~~Ep~ldyv~v-K~p~f~f~kf~~~~~~Lgt~MkS~G-----Evm~iGr~ 443 (1162)
|+-.|. |+......|-|.--.+-+ +.+-=-=-++.+-+...|....-.= -+-+.|++
T Consensus 329 ~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t 408 (1149)
T COG1038 329 TPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGST 408 (1149)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEECCCCCCCEEEEEECCCC
T ss_conf 74459974444033643788774133745477888752788862787438745776656646314455414456324899
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-----------------------HHH----HHHHH
Q ss_conf 89999989975037-876766557667664589899999760798-----------------------248----99999
Q gi|254780439|r 444 FAESLQKALRGLET-GLTGLDEIHIPSMESDNDPNALRSAISIPC-----------------------PDR----LRTVA 495 (1162)
Q Consensus 444 f~eA~~KAlrsle~-~~~g~~~~~~~~~~~~~~~~~l~~~L~~p~-----------------------~~R----l~~i~ 495 (1162)
|++|..|++|+|-. ...|.. .+.--|+.-|.||+ .+| |-+|+
T Consensus 409 ~e~a~~km~RaL~EfrIrGVk----------TNi~FL~~vl~h~~F~~g~y~T~FId~tPeLf~~~~~~Dr~tK~L~yl~ 478 (1149)
T COG1038 409 FEEAIRKMIRALREFRIRGVK----------TNIPFLEAVLNHPDFRSGRYTTSFIDTTPELFQFPKSQDRGTKLLTYLA 478 (1149)
T ss_pred HHHHHHHHHHHHHHHEECCEE----------CCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf 899999999988884511213----------2818999985595302686323340589888536612231577998876
Q ss_pred HHHHCCCCHHH------HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHH--HH
Q ss_conf 99973897889------98771889899999999999999875303760279999865337998899988589999--99
Q gi|254780439|r 496 QALRLGVSVEE------THQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCN--EI 567 (1162)
Q Consensus 496 eAlr~G~sv~e------i~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~--~V 567 (1162)
+---.|+.--+ ...-....+|+-.+.- ---.+.|.+.+...-.+++++-|.....|...-.--+ +.. .|
T Consensus 479 dvtVNg~P~~~~r~kp~~~~~~~~~~~~~~~~~--~Gtkq~Ld~~GP~~fa~wvr~q~~vlltDTT~RDaHQ-SLLATRv 555 (1149)
T COG1038 479 DVTVNGFPGLKSRPKPAYDDAKLPVINVSKPPP--RGTKQILDELGPEGFARWVREQKAVLLTDTTFRDAHQ-SLLATRV 555 (1149)
T ss_pred HHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHCHHHHHHHHHHCCCEEEEECCHHHHHH-HHHHHHH
T ss_conf 722447876688888666666678566567899--6478998765919899999844656554050366788-8888888
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCCCCCEEEE-------ECCC------CCCCCCC---CCCCCCCCCEEEEECCCCEEE
Q ss_conf 98898639847998621432443665855897-------2067------7666553---223567774189972763020
Q gi|254780439|r 568 RKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYS-------TYET------NFINKPV---SEDKVSDRKKIVILGGGPNRI 631 (1162)
Q Consensus 568 r~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~Ys-------TY~~------e~~~~~~---~e~~~~~~kkviVlGsGp~RI 631 (1162)
|..- -.+|-| -.....|-++| ||+. |+.-... -+..|. --.-.|=-|.|-.
T Consensus 556 Rt~d-l~~IA~----------~~a~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~~lRk~~PN--vlfQMLLRgaN~V 622 (1149)
T COG1038 556 RTHD-LARIAP----------ATARALPQLFSLEMWGGATFDVAMRFLKEDPWERLERLRKAVPN--VLFQMLLRGANGV 622 (1149)
T ss_pred HHHH-HHHHHH----------HHHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC--HHHHHHHCCCCCC
T ss_conf 6664-666657----------89886044301043087137888986414888999999876864--6899986005656
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHH-HHHHCCCCCCCEEEEECCCH--
Q ss_conf 147665318999999999659806996068652112324586379841678899999-98748567822799844512--
Q gi|254780439|r 632 GQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEI-LRVEQQKGELVGIIVQFGGQ-- 708 (1162)
Q Consensus 632 GqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I-~~~E~p~g~~~~vi~q~gGq-- 708 (1162)
|-.-==|-.+-+.++.-.+.|+..--| |+.|.+=.=|.+ ++.-+-.|.+...-..+.|.
T Consensus 623 gY~nyPDnVi~~Fvkqaa~~GIDvFRi------------------FDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDil 684 (1149)
T COG1038 623 GYKNYPDNVIREFVKQAAKSGIDVFRI------------------FDSLNWVEQMRVAIDAVREAGKVAEATICYTGDIL 684 (1149)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEE------------------EHHHCCHHHCHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 767796689999999987669648984------------------10010254344589999862984799887305667
Q ss_pred ----------HHHHHHHHHHHCCCEEEECCCCH--HHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHCCCC
Q ss_conf ----------46689888887598386127520--331028678999888709866854--2112156655565536971
Q gi|254780439|r 709 ----------TPLKLSKILEKNQIPILGTQPDS--IDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 709 ----------t~~~la~~L~~~gv~ilGts~~~--Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~~~a~~iGyP 774 (1162)
-=.+||++|++.|.+|||-.--+ ..-+--+..|+.|-++.++|.--- .++-+----...|-+.|--
T Consensus 685 dp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AGvD 764 (1149)
T COG1038 685 DPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAGVD 764 (1149)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 87764444899999999999667727876333421476999999999987448844875167887189999999983863
Q ss_pred EEEECCCCCCCCCCE
Q ss_conf 675134444565412
Q gi|254780439|r 775 LLIRPSYVLGGRAMQ 789 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~ 789 (1162)
++=-.+.-++|...+
T Consensus 765 ivD~A~~smsG~TSQ 779 (1149)
T COG1038 765 IVDVAMASMSGLTSQ 779 (1149)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 666654421488778
No 24
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=0 Score=426.28 Aligned_cols=337 Identities=19% Similarity=0.286 Sum_probs=292.0
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE-E-------CCHHHHHHH
Q ss_conf 77418997276302014766531899999999965980699606865211232458637984-1-------678899999
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE-S-------LTEEDILEI 688 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE-p-------lt~E~V~~I 688 (1162)
+=|||||.+.|++-+ +.++++|++|++||.|++++..-|..-..+|..|.- | |..+.|+++
T Consensus 3 ~~kkvLIANRGEIA~-----------Ri~ra~~elgi~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii~~ 71 (446)
T PRK08462 3 ELKRILIANRGEIAL-----------RAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISA 71 (446)
T ss_pred CCCEEEEECCHHHHH-----------HHHHHHHHCCCCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 788899989609999-----------999999982996999937677167628759898982899843341489999999
Q ss_pred HHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHH
Q ss_conf 987485678227998445124668--98888875983861275203310286789998887098668542--11215665
Q gi|254780439|r 689 LRVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHA 764 (1162)
Q Consensus 689 ~~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea 764 (1162)
.+..+++.+++|+ |....| ++..|.++|+.++|+++++|+.++||..|.+++.++|+|.++|. .+++.+++
T Consensus 72 a~~~~~dAihPGy-----GfLSEn~~fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~ea 146 (446)
T PRK08462 72 AEIFEADAIFPGY-----GFLSENQNFVEICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEEA 146 (446)
T ss_pred HHHHCCCEEECCC-----HHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 9995919898682-----05540879999999779989895999999840959899999985998067867877999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 55655369716751344445654125548999999999752101322111122333333334557777456702201201
Q gi|254780439|r 765 RLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAM 844 (1162)
Q Consensus 765 ~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~ 844 (1162)
.++|++||||||+||||++||+||++|++++||++.+..+-. +....|++.+|++|||+++++
T Consensus 147 ~~~a~~iGyPV~lKas~GGGGrGmriv~~~~el~~~~~~a~~-----------------ea~~~fg~~~v~vEk~i~~~r 209 (446)
T PRK08462 147 KKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAES-----------------EALSAFGDGTMYMEKFINNPR 209 (446)
T ss_pred HHHHHHHCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEEECCCE
T ss_conf 999997299568763278998742895767999999999987-----------------788605888669998503550
Q ss_pred EEEEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCEE
Q ss_conf 00101023079-84999852011021524576279816866899999999999999987413357624788512--8859
Q gi|254780439|r 845 EIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK--DGKI 921 (1162)
Q Consensus 845 EiEVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k--d~~i 921 (1162)
|+||++++|+. ++++. .|+-+..+.|+++++.+.|+++|+++++++|.+++.+++++++|+|++||||+++ ++++
T Consensus 210 HIEvQvl~D~~Gn~ihl--~eRdCSiQRr~QKviEeaPa~~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~~f 287 (446)
T PRK08462 210 HIEVQILGDKHGNVIHV--GERDCSMQRRHQKLIEESPAVVLDEKTRERLLETAIKAAKAIGYVGAGTFEFLLDSNMKDF 287 (446)
T ss_pred EEEEEEEECCCCCEEEE--ECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEE
T ss_conf 78999885289988885--3212366346787589789998998999998889999998648365433899980799718
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCC
Q ss_conf 9985244445630456777398899999999859721002466667777666873899720388344599
Q gi|254780439|r 922 YILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPG 991 (1162)
Q Consensus 922 YVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g 991 (1162)
|+||||||.++.+|.++.+||+||++.+.+++.|++|... ......+++.+.+.+| ..| ..|..-+|
T Consensus 288 yFlE~NtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~l~~q-~~i~~~GhaIe~Ri~A-Edp-~~F~Ps~G 354 (446)
T PRK08462 288 YFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ-ESIKLKGHAIECRITA-EDP-KKFYPSPG 354 (446)
T ss_pred EEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCEEEEEEEEC-CCC-CCCCCCCE
T ss_conf 9997433421001111221487799999998679998756-6667264342234204-587-76799875
No 25
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=0 Score=423.80 Aligned_cols=312 Identities=22% Similarity=0.300 Sum_probs=288.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
++||||.+.|.| ++..||++|++||+||.|||.|..=+.+-.+||+.| |+| |..+.|.+.+
T Consensus 2 f~KiLIANRGEI-----------AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa 70 (645)
T COG4770 2 FSKILIANRGEI-----------ACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAA 70 (645)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHH
T ss_conf 624887246434-----------689999999809956999725777852666412244317996012122688999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
++...|||||+|| +|+|+.-| ++-|+-++|+|+++|+.++|+...+++|.+.|+|+.|
T Consensus 71 ~~tGA~AIHPGYG---------FLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VP--------- 132 (645)
T COG4770 71 RRTGAQAIHPGYG---------FLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVP--------- 132 (645)
T ss_pred HHHCCCCCCCCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCC---------
T ss_conf 9738321368842---------1235989999999779189788979999844679999999974998068---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
|+.+.+++.+++..+|++||||||||+++++||+||++
T Consensus 133 ------------------------------------------G~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRv 170 (645)
T COG4770 133 ------------------------------------------GYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRV 170 (645)
T ss_pred ------------------------------------------CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf ------------------------------------------97874458999999998639858999636899775376
Q ss_pred CCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 16999999999----98998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|++.+|+.+.+ .+|...|++..|+|||||..++|||+||+.|++||+++++++||+-|+++|+..+.+ |+..|+
T Consensus 171 v~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEA--PaP~l~ 248 (645)
T COG4770 171 VETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEA--PAPFLT 248 (645)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHCCHHHHCC--CCCCCC
T ss_conf 268899999999999998850488647624551787448999986277878886325332423112232008--999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
+++++.|.++|.++++++|| +|+++|+|.++ .++.|||+|||+|+-=--|.-.-.||..|..---++|-|..|+-..+
T Consensus 249 ~~~R~amg~aAv~~a~avgY-~gAGTVEFivd-~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~~Q~ 326 (645)
T COG4770 249 EETREAMGEAAVAAAKAVGY-VGAGTVEFIVD-ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPFTQD 326 (645)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEC-CCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999986297-75755899983-89868999862202025641224201389999999743885776656
Q ss_pred CCC
Q ss_conf 756
Q gi|254780439|r 391 DIT 393 (1162)
Q Consensus 391 ~~~ 393 (1162)
++.
T Consensus 327 di~ 329 (645)
T COG4770 327 DIP 329 (645)
T ss_pred CCC
T ss_conf 654
No 26
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=100.00 E-value=0 Score=424.82 Aligned_cols=375 Identities=20% Similarity=0.251 Sum_probs=323.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHHH
Q ss_conf 6999976775420505466688899999999879789997487650107845131004-337-------99999999998
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKIIE 79 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii~ 79 (1162)
+||||.++|.| ++..||+||++||++|+|||.|.--|.+=..||..| |+| |..+-|.+|.+
T Consensus 2 ~~vLiANRGEI-----------A~RiirTL~~lgi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esYL~~dkil~~Ak 70 (1226)
T TIGR02712 2 KTVLIANRGEI-----------AVRIIRTLRKLGIRSVAVYSDADRASQHVLDADEAVCLGGATAAESYLDIDKILAIAK 70 (1226)
T ss_pred CEEEEECCHHH-----------HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf 65677644379-----------9999999877186379863210021578236050260589541322214789999997
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 62898899758870268888998875962----88287571499899986058899999999878988862000234433
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
+...+||||||| ||+|+--| ++-||.|+|++++.|++-+=+...+++..+.|+|..|.+-+
T Consensus 71 ~tGA~AI~PGYG---------FLSENA~FA~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgL------ 135 (1226)
T TIGR02712 71 KTGAQAIHPGYG---------FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGL------ 135 (1226)
T ss_pred HCCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHH------
T ss_conf 558938745887---------23578779989984795787787066744383256899999668898885155------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 33323333333444444443333222111111233444444455444899999999987199699941326786645111
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIA 235 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv 235 (1162)
+.|++||+++|++||||||+|...++||-||..|
T Consensus 136 ----------------------------------------------L~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c 169 (1226)
T TIGR02712 136 ----------------------------------------------LESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKC 169 (1226)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf ----------------------------------------------8779999999864699547987078765245111
Q ss_pred CCHHHHHHHHHH----HHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 699999999998----9985799827986644997899999997289988999630000001000010134337322898
Q gi|254780439|r 236 YNRSEFLEIVEN----GLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTD 311 (1162)
Q Consensus 236 ~n~eeL~~~~~~----al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d 311 (1162)
.|.+||++.++. |.+.|.+.-|++||||+.++|||||||.|++|+++.++.|+|+-||+.||..+++ |+..|+.
T Consensus 170 ~~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQRRNQKVvEET--PAP~LP~ 247 (1226)
T TIGR02712 170 DNAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET--PAPNLPE 247 (1226)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEC--CCCCCCH
T ss_conf 89899999999989988632363514340320378428998752697336997116754444566558727--7468648
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999871834576468999955898499985044431035788876346147677764134461013577
Q gi|254780439|r 312 KEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGND 391 (1162)
Q Consensus 312 ~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~ 391 (1162)
+.++.|++||.+++..|+|+ +++||+|.+|++.++|||+|||+|+===-|.-...||..|..-=-+||-|..++.=..+
T Consensus 248 ~~R~~L~~AA~~Lg~~V~Yr-SAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~VtGlDLVEWM~r~AAg~~p~~~~~~ 326 (1226)
T TIGR02712 248 ETRAALLAAAEKLGEAVNYR-SAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMVRIAAGELPDFDSLN 326 (1226)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCHHHCC
T ss_conf 99999999999999971876-37604774022108712113234111335730178464089899997168888852443
Q ss_pred C------C--C---------CCCCCCCCCCCCE-EEEEEEECCCCCCCCCCCC--CCCCCCC-----CCHHHHCCCCHHH
Q ss_conf 5------6--7---------7776665776776-8985442012114776666--6773100-----1002222676899
Q gi|254780439|r 392 I------T--G---------GKTPASFEPSIDY-IVTKIPRFTFEKFPGSDVT--LTTSMKS-----VGEVMAIGRTFAE 446 (1162)
Q Consensus 392 ~------~--~---------~~~~a~~Ep~ldy-v~vK~p~f~f~kf~~~~~~--Lgt~MkS-----~GEvm~iGr~f~e 446 (1162)
. + | .+...-|.||--- +-|+||.|.=.. --+|.= =||+--. -=-++..|.+=++
T Consensus 327 ~~~~~~l~p~G~aiEaRvYAEnP~k~F~PSpG~Lt~V~FP~~~G~~-~RvDTWV~~Gtevsp~YDPmlAKiIv~g~~R~~ 405 (1226)
T TIGR02712 327 IEIFDNLTPRGAAIEARVYAENPAKNFQPSPGLLTEVQFPDDGGKA-VRVDTWVETGTEVSPEYDPMLAKIIVHGKDRED 405 (1226)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCE-EEEECEECCCCEECCCCCCCEEEEEECCCCHHH
T ss_conf 0003578875038999984407767772698606887727888953-787021127835677658742446643679789
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999899750378
Q gi|254780439|r 447 SLQKALRGLETG 458 (1162)
Q Consensus 447 A~~KAlrsle~~ 458 (1162)
|++|-.+.|+..
T Consensus 406 A~~kL~~AL~~T 417 (1226)
T TIGR02712 406 AIAKLSQALDET 417 (1226)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999887301
No 27
>KOG0238 consensus
Probab=100.00 E-value=0 Score=400.69 Aligned_cols=302 Identities=22% Similarity=0.309 Sum_probs=283.4
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHHHHH
Q ss_conf 99976775420505466688899999999879789997487650107845131004-337-------9999999999862
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKIIEKE 81 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii~~E 81 (1162)
|||.+.|.| ++..+|++|++||+||.|+|.|..-|.+-.+||+.| +.| |..+.|.+.+++.
T Consensus 1 iLiANRGEI-----------AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238 1 ILIANRGEI-----------ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred CEECCCCCE-----------EEHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 922246606-----------511566799729758999715763432000045103428873444341378999999862
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 898899758870268888998875962----8828757149989998605889999999987898886200023443333
Q gi|254780439|r 82 RPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEH 157 (1162)
Q Consensus 82 ~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~ 157 (1162)
...||||+|| +|+|+--| ++.||.|+|+++++|+-++|+..-++.|.+.|+|+.|
T Consensus 70 gaqaihPGYG---------FLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vp------------ 128 (670)
T KOG0238 70 GAQAIHPGYG---------FLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVP------------ 128 (670)
T ss_pred CCCEECCCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCC------------
T ss_conf 8846217855---------3235538999998769868798879988731257789999864996136------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 32333333344444444333322211111123344444445544489999999998719969994132678664511169
Q gi|254780439|r 158 DRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYN 237 (1162)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n 237 (1162)
|+++..+|.+++.+.|++||||||||+++++||+||+||++
T Consensus 129 ---------------------------------------G~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~ 169 (670)
T KOG0238 129 ---------------------------------------GYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWS 169 (670)
T ss_pred ---------------------------------------CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf ---------------------------------------85643266799999998619857999515788763175148
Q ss_pred HHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 999999999----8998579982798664499789999999728998899963000000100001013433732289889
Q gi|254780439|r 238 RSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKE 313 (1162)
Q Consensus 238 ~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~ 313 (1162)
++||++.++ +|.+.|++..+|+|||+.+++|||+||+.|++||.+++++++|+.|++.|+..+.+ |+..|+.+.
T Consensus 170 ~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEa--Pap~l~~e~ 247 (670)
T KOG0238 170 EEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEA--PAPNLPEET 247 (670)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCC--CCCCCCHHH
T ss_conf 688999999888888763186411077763687548999973477768885045442423211566308--999999899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 9999999999998718345764689999558984999850444310357888763461476777641344610
Q gi|254780439|r 314 YQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLD 386 (1162)
Q Consensus 314 ~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ 386 (1162)
+..|+++|...++++|| +|+++|+|.+|+ .++|||+|||+|+----|.....||..+..---++|.|+.|+
T Consensus 248 R~~lgeaAv~aa~avgY-~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp 318 (670)
T KOG0238 248 RRALGEAAVRAAKAVGY-VGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLP 318 (670)
T ss_pred HHHHHHHHHHHHHHHCC-CCCCEEEEEECC-CCCEEEEEEECEEEECCCCHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999999886387-644449999837-885799984022530364163212227899999986499999
No 28
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=0 Score=385.77 Aligned_cols=404 Identities=19% Similarity=0.255 Sum_probs=323.0
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE-EE-------CCHHHHH
Q ss_conf 677741899727630201476653189999999996598069960686521123245863798-41-------6788999
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYF-ES-------LTEEDIL 686 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYF-Ep-------lt~E~V~ 686 (1162)
|..=|||||---|-+ .++.++++|++|++||.|.+.+..-|..-..+|..|. .| |..+.|+
T Consensus 2 p~~ikkvLIANRGEI-----------A~Riirt~relgi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii 70 (458)
T PRK12833 2 PSRIRTVLVANRGEI-----------AVRVIRAAHELGMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (458)
T ss_pred CCCCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 977878999778699-----------999999999839989999185765583587499999828987001326999999
Q ss_pred HHHHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHH
Q ss_conf 99987485678227998445124668--98888875983861275203310286789998887098668542--112156
Q gi|254780439|r 687 EILRVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVE 762 (1162)
Q Consensus 687 ~I~~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~e 762 (1162)
++.+..+.+.+++|+ |....| +|..++++|+.++|+++++|..++|+..+.+++.++|+|..+|. .+.+.+
T Consensus 71 ~~A~~~g~dAiHPGY-----GFLSEna~FA~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ 145 (458)
T PRK12833 71 AAARQCGADAIHPGY-----GFLSENAAFAAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLD 145 (458)
T ss_pred HHHHHHCCCEEECCC-----CHHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 999982999997686-----625529999999997899899949999998509699999999849996689667667799
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 65556553697167513444456541255489999999997521013221111223333333345577774567022012
Q gi|254780439|r 763 HARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSD 842 (1162)
Q Consensus 763 ea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~ 842 (1162)
++.++|++||||||+|+|+.+||+||++|++++||+.++..+-. +....|++.+|+++||+.+
T Consensus 146 ea~~~a~~iGyPv~iKAs~GGGGrGmriv~~~~el~~~~~~a~~-----------------ea~~~Fg~~~v~iEk~i~~ 208 (458)
T PRK12833 146 AALEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAELPLAQR-----------------EAQAAFGDGGVYLERFIAR 208 (458)
T ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCC
T ss_conf 99999986597542133258998710795264114899999999-----------------9997269976478761367
Q ss_pred CEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCE
Q ss_conf 010010102307984999852011021524576279816866899999999999999987413357624788512--885
Q gi|254780439|r 843 AMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK--DGK 920 (1162)
Q Consensus 843 a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k--d~~ 920 (1162)
++|+||++++|+.++++ +.|+-+..+.|+++.+.+.|++.|+++++++|.+++.+++++++++|++||||+++ +++
T Consensus 209 ~RHIEVQvl~D~~~~vh--l~eRdCSiQRr~QKviEeaPsp~l~~~~r~~l~~~a~~la~~v~y~gagTvEFl~d~~~~~ 286 (458)
T PRK12833 209 ARHIEVQILGDGENVVH--LFERECSLQRRRQKILEEAPSPSLTPAQRDALCASATRLARAVGYRGAGTLEYLFDDARGE 286 (458)
T ss_pred CEEEEEEEEECCCCEEE--EEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCC
T ss_conf 50799999854787699--8502565656777558877999789999999988999998853310000266678658896
Q ss_pred EEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCC
Q ss_conf 99985244445630456777398899999999859721002466667777666873899720388344599986707756
Q gi|254780439|r 921 IYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEM 1000 (1162)
Q Consensus 921 iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEM 1000 (1162)
+|+||||||.++.||.+..+||+||++.+.+++.|.+|..........+++.+.+.+| ..|.=.|..-+|.=..+-.
T Consensus 287 fyFlEvNtRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L~~~q~~i~~~GhaIe~RI~A-Edp~~~f~Ps~G~i~~~~~-- 363 (458)
T PRK12833 287 FYFIEMNTRIQVEHPVTEAITGIDLVREMLRIADGEPLRFAQGDIALRGAALECRINA-EDPLQDFRPNPGRIDALVW-- 363 (458)
T ss_pred EEEEEEECCCCCCCCEEHHHCCCCHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEEEEC-CCCCCCCCCCCEEEEEEEC--
T ss_conf 8999621364444421223318859999999977997786421066675089997522-5887786768838526863--
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 3101377741999999999999838879887-----25999964412899999-9999998898999938889999
Q gi|254780439|r 1001 RSTGEVIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFL 1070 (1162)
Q Consensus 1001 kSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L 1070 (1162)
..|.-.-++... ..|..+|.. ++++ ++..|+.+.+. +.+.|.+ |.|..-+-+-.||
T Consensus 364 -P~g~gvRvDt~v---------~~G~~v~~~yDsllaKlI--~~g~~R~~Ai~rl~~aL~e--~~I~Gv~TNi~~l 425 (458)
T PRK12833 364 -PAGPGVRVDSLL---------YPGYAVPPFYDSLLAKLI--VHDESRAAALARAARALEE--LRIDGMKTTAPLH 425 (458)
T ss_pred -CCCCCEEEECCC---------CCCCCCCCCCCCHHHEEE--EECCCHHHHHHHHHHHHHC--CEEECCCCCHHHH
T ss_conf -999988888870---------277974887550430036--8889999999999999844--7998933879999
No 29
>KOG0369 consensus
Probab=100.00 E-value=0 Score=383.26 Aligned_cols=369 Identities=22% Similarity=0.333 Sum_probs=313.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEC-----C----CCHHHHHHH
Q ss_conf 5699997677542050546668889999999987978999748765010784513100433-----7----999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE-----P----ITPEVVAKI 77 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~e-----P----lt~e~v~~I 77 (1162)
-+||||.+.|.|-| ...||+.|+|+++|.|+|.-.+.|-+...||+.|+- | |+.+.+.+|
T Consensus 33 ~~kvlVANRgEIaI-----------RvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~i 101 (1176)
T KOG0369 33 KNKVLVANRGEIAI-----------RVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISI 101 (1176)
T ss_pred HCEEEEECCCCCHH-----------HHHHHHHHHCCEEEEEEECCCHHHHHHHCCCHHEECCCCCCCHHHHHCHHHHHHH
T ss_conf 03478852762004-----------7887777625447999731111246563043012326777826765147999999
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHCCCHH----HHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98628988997588702688889988759628----82875714998999860588999999998789888620002344
Q gi|254780439|r 78 IEKERPDAILPTTGGQTALNTALSLKRMGVLD----RYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATD 153 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqtalnl~~~L~e~gil~----~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~ 153 (1162)
.++.+.|+|||+|| +|+|+.-|. +.|+.++|+|++.|++++|+...+.+..+.|+|+.|.
T Consensus 102 ak~~~vdavHPGYG---------FLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPG------- 165 (1176)
T KOG0369 102 AKKHNVDAVHPGYG---------FLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPG------- 165 (1176)
T ss_pred HHHCCCCEECCCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-------
T ss_conf 98728873257742---------12212489999986596696889799988420888889999719971589-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 33333233333334444444433332221111112334444444554448999999999871996999413267866451
Q gi|254780439|r 154 IKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGG 233 (1162)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~ 233 (1162)
-.+.+++.+||++|+++.|||||++++|++||+||+
T Consensus 166 --------------------------------------------TpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmR 201 (1176)
T KOG0369 166 --------------------------------------------TPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMR 201 (1176)
T ss_pred --------------------------------------------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEE
T ss_conf --------------------------------------------999754299999999861983899610168976437
Q ss_pred CCCCHHHHHHHH----HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 116999999999----9899857998279866449978999999972899889996300000010000101343373228
Q gi|254780439|r 234 IAYNRSEFLEIV----ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTL 309 (1162)
Q Consensus 234 iv~n~eeL~~~~----~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL 309 (1162)
+|+..+++++.+ ++|+.+|+++.++|||||+.+||||+|++.|++||++++.+++|+.|+++|+..+|+ |+.+|
T Consensus 202 vVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVEiA--PA~~L 279 (1176)
T KOG0369 202 VVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIA--PAKTL 279 (1176)
T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHCCEEEEC--CCCCC
T ss_conf 7502556999999888999986178615378662586526898721356878987614551643201036734--55659
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 98899999999999998718345764689999558984999850444310357888763461476777641344610135
Q gi|254780439|r 310 TDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELG 389 (1162)
Q Consensus 310 ~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~ 389 (1162)
..+.+++|-+.|+|++|++||+ -+++++|.+| ..+++||||+|||+----....-.||..|...--.+|-|.+|+++.
T Consensus 280 p~~vR~~~~~davklAk~vgY~-NAGTvEFLvD-~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lg 357 (1176)
T KOG0369 280 PPEVRDAILTDAVKLAKHVGYE-NAGTVEFLVD-QKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDLG 357 (1176)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEC-CCCCEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCC
T ss_conf 9899999999999999984756-5770788771-6797899995464356655231004520101111343178753235
Q ss_pred CCCC--------------CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC------------CHHHHCCCC
Q ss_conf 7756--------------77776665776776898544201211477666667731001------------002222676
Q gi|254780439|r 390 NDIT--------------GGKTPASFEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSV------------GEVMAIGRT 443 (1162)
Q Consensus 390 ~~~~--------------~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~------------GEvm~iGr~ 443 (1162)
.... .......|.|....+-| |. .-.|.-.+|...--=- =-|.+-|++
T Consensus 358 l~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEV----fR--SgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~ 431 (1176)
T KOG0369 358 LTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEV----FR--SGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGST 431 (1176)
T ss_pred CCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEE----EE--CCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 43020320433799887235855468998750799----97--0787447624754356641165555327889853886
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8999998997503
Q gi|254780439|r 444 FAESLQKALRGLE 456 (1162)
Q Consensus 444 f~eA~~KAlrsle 456 (1162)
.+.+--|-+|+|-
T Consensus 432 ~~~~a~KMiRaL~ 444 (1176)
T KOG0369 432 YEIAARKMIRALI 444 (1176)
T ss_pred CHHHHHHHHHHHH
T ss_conf 5678999999999
No 30
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=7e-45 Score=373.27 Aligned_cols=374 Identities=23% Similarity=0.290 Sum_probs=309.5
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECC-------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004-337-------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEP-------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~eP-------lt~e~v~~Ii 78 (1162)
.+||||.++|.+ +...++|++|+|++||.|+|.|.--+-...+||+.| +.| ++.+.+...-
T Consensus 2 ~~kiLIanrGei-----------a~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a 70 (449)
T COG0439 2 FKKILIANRGEI-----------AVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAA 70 (449)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 736999558536-----------899999999849858999661002252566375679838865034565188899899
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 862898899758870268888998875962----8828757149989998605889999999987898886200023443
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDI 154 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~ 154 (1162)
+...+|||||+|| +|+++.-| ++.|+.++|+++++|+++.|+...+++|.+.|+|++|.+
T Consensus 71 ~~~gadai~pGyg---------flsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs------- 134 (449)
T COG0439 71 EETGADAIHPGYG---------FLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS------- 134 (449)
T ss_pred HHCCCCEECCCCH---------HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------
T ss_conf 8608766723503---------421788999999974975108498999974458999999997499958997-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33332333333344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 155 KEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
.+.+.+.+++.+.|++|||||||||++++||+||++
T Consensus 135 --------------------------------------------~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~ 170 (449)
T COG0439 135 --------------------------------------------DGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRV 170 (449)
T ss_pred --------------------------------------------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf --------------------------------------------877688899999998719978999778899654799
Q ss_pred CCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 169999999999----8998579982798664499789999999728998899963000000100001013433732289
Q gi|254780439|r 235 AYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~ 310 (1162)
|+|++||.+.++ ++..+|+...|++||||.+.+|+|+||+.|++||+++++.++|.-|++.++--.++ |+.-++
T Consensus 171 v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvieea--psp~~~ 248 (449)
T COG0439 171 VRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEA--PSPLLT 248 (449)
T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEC--CCCCCC
T ss_conf 799999999999999888875589727863410588468999987686658999864668767766155305--888899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999987183457646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
++.++++..++.|.++.+|| .|.++++|.++. ++++||||||||++.-.+....+||..+.+..-++++|..|+--..
T Consensus 249 ~e~r~~i~~~a~~a~~~~gY-~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~~q~ 326 (449)
T COG0439 249 EELREKIGEAAVRAAKLIGY-RGAGTVEFLYDS-NGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSLKQE 326 (449)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEC-CCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999986387-777569999827-9987999986411367630100000428999999976998887777
Q ss_pred CCCCCCC-----------CCCCCCCCCEEEEEEEECC------CCCCCCCCCCCCCCCC-CCCHHHHCCCCHHHHHHHHH
Q ss_conf 7567777-----------6665776776898544201------2114776666677310-01002222676899999899
Q gi|254780439|r 391 DITGGKT-----------PASFEPSIDYIVTKIPRFT------FEKFPGSDVTLTTSMK-SVGEVMAIGRTFAESLQKAL 452 (1162)
Q Consensus 391 ~~~~~~~-----------~a~~Ep~ldyv~vK~p~f~------f~kf~~~~~~Lgt~Mk-S~GEvm~iGr~f~eA~~KAl 452 (1162)
++.-..+ ...|.|+...+- ...+| ++...+.+.+..+.-- ..|.+.+.|++-.+|+.++-
T Consensus 327 ~~~~~g~aie~Ri~aedp~~~f~pspG~i~--~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~ 404 (449)
T COG0439 327 DIKFRGHAIECRINAEDPLGNFLPSPGKIT--RYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMR 404 (449)
T ss_pred CCCCCCEEEECEEECCCCCCCCCCCCCEEE--EECCCCCCCEEEEEECCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHH
T ss_conf 756133131000105688878578997650--140799886688732135852486414013689996488699999999
Q ss_pred HHCCC
Q ss_conf 75037
Q gi|254780439|r 453 RGLET 457 (1162)
Q Consensus 453 rsle~ 457 (1162)
|+|..
T Consensus 405 ~aL~e 409 (449)
T COG0439 405 RALDE 409 (449)
T ss_pred HHHHH
T ss_conf 87876
No 31
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=5.6e-45 Score=374.22 Aligned_cols=402 Identities=16% Similarity=0.205 Sum_probs=319.3
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE-------CCHHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841-------678899999987
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES-------LTEEDILEILRV 691 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp-------lt~E~V~~I~~~ 691 (1162)
+||||---|-+ .++.++++|++|++||.|-+....-|.--..+|.-|.-. |..+.|+++.+.
T Consensus 3 ~kvLIANRGEI-----------A~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea~~ig~~~~~sYln~~~Ii~~A~~ 71 (471)
T PRK07178 3 KKILIANRGEI-----------AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAHSIGADPLAGYLNPRKLVNLAVE 71 (471)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEECCCCHHHHHCCHHHHHHHHHH
T ss_conf 60899778699-----------9999999998399489990837566836884888887188726654499999999999
Q ss_pred HCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 485678227998445124668--98888875983861275203310286789998887098668542--11215665556
Q gi|254780439|r 692 EQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHARLI 767 (1162)
Q Consensus 692 E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea~~~ 767 (1162)
.+.+.+++|+ |....| +|+.++++|+.++|+++++|+.+.|+..+.+++.+.|+|..+|. .+.+.++++++
T Consensus 72 ~g~dAiHPGY-----GFLSEn~~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~ 146 (471)
T PRK07178 72 TGCDALHPGY-----GFLSENAELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAE 146 (471)
T ss_pred HCCCEEECCC-----CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 6999997783-----33115989999999789989995999999874839899999986998268968865669999999
Q ss_pred HHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 55369716751344445654125548999999999752101322111122333333334557777456702201201001
Q gi|254780439|r 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEID 847 (1162)
Q Consensus 768 a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiE 847 (1162)
|+++|||||+|+++++||+||++|+++++|++++.++.. +....|++.+|++|||+.+++|+|
T Consensus 147 A~~iGyPV~lKAa~GGGGrGmrvv~~~~el~~~~~~~~~-----------------EA~~aFg~~~v~lEk~i~~~RHIE 209 (471)
T PRK07178 147 AERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVIS-----------------EATKAFGSAEVFLEKCIVNPKHIE 209 (471)
T ss_pred HHHCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCCCEEEE
T ss_conf 986698158632026876644997660568899999999-----------------999844997368766046762899
Q ss_pred EEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 01023079849998520110215245762798168668999999999999999874133576247885128859998524
Q gi|254780439|r 848 VDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVN 927 (1162)
Q Consensus 848 VDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvN 927 (1162)
|++++|+...++. +.|+-+....|+++.+.+.|++.|+++++++|.+.+.+++++++++|+++|||+++++++|+||||
T Consensus 210 VQilgD~~Gnvih-l~eRdCSiQRr~QKvIEeaPa~~l~~~~r~~l~~~A~~la~~v~Y~gaGTvEFlv~~~~~yFlEvN 288 (471)
T PRK07178 210 VQILADSFGNVVH-LFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLADGEVYFMEMN 288 (471)
T ss_pred EEEEEECCCCEEE-EEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEECC
T ss_conf 9999807898888-841234651078732787699988899999998899999996486501269999867947998324
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 44456304567773988999999998597210024666677776668738997203883445999867077563101377
Q gi|254780439|r 928 PRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVI 1007 (1162)
Q Consensus 928 pRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVm 1007 (1162)
||.+..+|.+.-+||++|++.+.+++.|.+|..........+++.+.+.++ ..|.-.|..-+|-=..+-+- .|.
T Consensus 289 tRlQVEH~VTE~vtGiDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIe~Ri~A-EDp~~~F~Ps~G~i~~~~~P---~g~-- 362 (471)
T PRK07178 289 TRVQVEHTITEEITGIDIVREQIRIASGLPLSVKQEDIQHRGFALQFRINA-EDPKNNFLPSFGKITRYYAP---GGP-- 362 (471)
T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCCCEEEEEECC---CCC--
T ss_conf 666555421366616758999999867997883102445588589999851-37766865687257789769---999--
Q ss_pred EEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 741999999999999838879887-----25999964412899999-99999988989999388899999
Q gi|254780439|r 1008 GIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLE 1071 (1162)
Q Consensus 1008 gig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~ 1071 (1162)
|...+.+ ...|..+|.+ ++++ ++..|+.+.+. +.+.|.+ |.|..-.-+-.||.
T Consensus 363 --gvR~Dt~-----~~~G~~v~~~yDsmlaKli--~~g~~R~~Ai~rl~~aL~e--~~I~Gv~Tni~~l~ 421 (471)
T PRK07178 363 --GVRTDTA-----IYTGYTIPPYYDSMCLKLI--VWALTWEEALDRGLRALDD--MRVQGVKTTAPYYQ 421 (471)
T ss_pred --CEEEECC-----CCCCCEECCCCCCHHHHHE--EECCCHHHHHHHHHHHHHC--CEEECCCCCHHHHH
T ss_conf --8898667-----7688961887442536104--8889999999999998626--59979468699999
No 32
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.1e-44 Score=371.69 Aligned_cols=400 Identities=20% Similarity=0.281 Sum_probs=323.7
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE-E-------CCHHHHHHHHH
Q ss_conf 418997276302014766531899999999965980699606865211232458637984-1-------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE-S-------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE-p-------lt~E~V~~I~~ 690 (1162)
|||||---|-+ .++.++++|++|++||.|.+.+..-|..-..+|.-|.- | |..+.|+++..
T Consensus 3 ~kvLIANRGEI-----------A~RiiRt~~elgi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~ 71 (449)
T PRK08591 3 DKILIANRGEI-----------ALRILRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAE 71 (449)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 44889678499-----------9999999998499499986857527852885988899589884333048999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 7485678227998445124668--98888875983861275203310286789998887098668542--1121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea~~ 766 (1162)
..+.+.+++|+ |....| +|..++++|+.++|+++++|..+.|+..+.+++.+.|+|..||. .+++.+++.+
T Consensus 72 ~~g~dAihPGY-----GFLSEna~FA~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~ea~~ 146 (449)
T PRK08591 72 ITGADAIHPGY-----GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALA 146 (449)
T ss_pred HHCCCEEECCC-----CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 82999897274-----2432589999999987999999299999987698999999998399978887665568999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|+++|||||+|+|+.+||+||++|++++||...+..+-. +....|++..|+++||+++++|+
T Consensus 147 ~a~~iGyPv~iKA~~GGGGrGmrvv~~~~el~~~~~~~~~-----------------Ea~~aFg~~~v~iEk~i~~~RHI 209 (449)
T PRK08591 147 IAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARA-----------------EAKAAFGNPGVYMEKYLENPRHI 209 (449)
T ss_pred HHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCCCCEE
T ss_conf 9987499669885268987769998567899999999999-----------------99973799856787712565367
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 101023079-8499985201102152457627981686689999999999999998741335762478851288599985
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILE 925 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIE 925 (1162)
||++++|+. ++++ +.|+-+....+.++-+...|++.|+++++++|.+++.+++++++|+|+++|+|+++++++|+||
T Consensus 210 EVQilgD~~Gn~vh--l~eRdCSiQRR~QKvIEEaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~fyFlE 287 (449)
T PRK08591 210 EIQVLADGHGNAIH--LGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYENGEFYFIE 287 (449)
T ss_pred EEEEEECCCCCEEE--CCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEE
T ss_conf 89998638998898--7477567201461379977998789999999999999999974964210389999789089996
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEE
Q ss_conf 24444563045677739889999999985972100246666777766687389972038834459998670775631013
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGE 1005 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGE 1005 (1162)
||||.+..+|.+.-+||++|++.+.+++.|++|..........+++.+.+.++ ..| ..|..-+|.=..+-+ .+|.
T Consensus 288 mNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIE~Ri~A-EdP-~~f~Ps~G~i~~~~~---P~g~ 362 (449)
T PRK08591 288 MNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINA-EDP-KNFMPSPGKITRYHP---PGGP 362 (449)
T ss_pred EECCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEECC-CCC-CCCCCCCEEEEEEEC---CCCC
T ss_conf 24341245652266507719999999867999997710067576112101013-584-546788727879974---8999
Q ss_pred EEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 77741999999999999838879887-----25999964412899999-99999988989999388899999
Q gi|254780439|r 1006 VIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLE 1071 (1162)
Q Consensus 1006 Vmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~ 1071 (1162)
-.-+|...+ .|..+|.. ++++ ++..|+.+.+. +.+.|.+ |.|..-.-+-.||.
T Consensus 363 gvRvDt~~~---------~G~~v~~~YDsmlaKlI--~~g~~R~~Ai~rl~~AL~e--~~I~Gv~TN~~~l~ 421 (449)
T PRK08591 363 GVRVDSHVY---------TGYTIPPYYDSMIGKLI--VHGETREEAIARMKRALSE--FVIDGIKTTIPLHL 421 (449)
T ss_pred CEEEECCCC---------CCCEECCCCCCHHCEEE--EECCCHHHHHHHHHHHHHC--CEEECCCCCHHHHH
T ss_conf 889958815---------68984887455320388--9789999999999999736--69979668699999
No 33
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.8e-44 Score=369.77 Aligned_cols=401 Identities=20% Similarity=0.269 Sum_probs=322.4
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE--------CCHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841--------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES--------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp--------lt~E~V~~I~~ 690 (1162)
+||||-.-|-+ .++.++++|++|++|+.|-+.+..-|.--..+|..|.-. |..+.|+++..
T Consensus 3 ~kvLIANRGEI-----------A~Ri~rt~~~lgi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A~ 71 (447)
T PRK05586 3 KKILIANRGEI-----------AVRIIRACREMGIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSATV 71 (447)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHHH
T ss_conf 54999898799-----------9999999998399599991703367854764989987399995651148999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 7485678227998445124668--98888875983861275203310286789998887098668542--1121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea~~ 766 (1162)
.-+.+.+++|+ |....| ++..++++|+.++|+++++|..+.|+..+.+++.+.|+|.++|. .+++.+++++
T Consensus 72 ~~g~dAihPGY-----GFLSEna~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~~ 146 (447)
T PRK05586 72 LTGAQAIHPGF-----GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEALK 146 (447)
T ss_pred HHCCCEEECCC-----CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 84998997185-----5322389999999987987989599999985384999999998499765686888899999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|+++|||||+|+++.+||+||+||++++||..++..+.. +....+++.+|+||||+++++|+
T Consensus 147 ~a~~iGyPv~lKAa~GGGGrGmriv~~~~el~~~~~~a~~-----------------ea~~aFg~~~v~vEk~i~~~RHI 209 (447)
T PRK05586 147 IAEEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKS-----------------EAKAAFGDDSMYIEKFIENPRHI 209 (447)
T ss_pred HHHHCCCCEEEECCCCCCCCEEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCCCCEE
T ss_conf 9986298237630569997736998999999999999999-----------------99982799846887724787179
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEE
Q ss_conf 101023079-8499985201102152457627981686689999999999999998741335762478851-28859998
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYIL 924 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVI 924 (1162)
||++++|+. ++++ +.|+-+..+.|.++.+...|++.|+++++++|.+++.+++++++++|++||||++ +++++|+|
T Consensus 210 EVQvl~D~~Gn~vh--lgeRdCSiQRr~QKvIEeaPap~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~fyFl 287 (447)
T PRK05586 210 EFQILGDNYGNVVH--LGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFM 287 (447)
T ss_pred EEEEEECCCCCEEE--EECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEE
T ss_conf 99999707998888--4064246656886379988999888999999999999888860603332478887589978999
Q ss_pred EECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCE
Q ss_conf 52444456304567773988999999998597210024666677776668738997203883445999867077563101
Q gi|254780439|r 925 EVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTG 1004 (1162)
Q Consensus 925 EvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTG 1004 (1162)
|||||.+..+|.+.-+||++|++.+.+++.|++|..........+++.+.+.++ ..|.-.|..-+|.=..+..- +|
T Consensus 288 EvNtRlQVEH~VTE~vtGvDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIe~Ri~A-Edp~~~f~Ps~G~i~~~~~P---~g 363 (447)
T PRK05586 288 EMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSITQEDIKINGHAIECRINA-EDPENGFMPCPGKIEELYIP---GG 363 (447)
T ss_pred EEECCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCCCCCEEEEEECC---CC
T ss_conf 334355556641100037768999999867999997701078785699998214-57887850587566589769---99
Q ss_pred EEEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 377741999999999999838879887-----25999964412899999-99999988989999388899999
Q gi|254780439|r 1005 EVIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLE 1071 (1162)
Q Consensus 1005 EVmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~ 1071 (1162)
.-.-+|... .+|..+|.. +++++.. .|+.+.+. +.+.|.+ |.|..-.-+-.||.
T Consensus 364 ~gvRvDt~~---------~~G~~v~~~yDsllaK~I~~g--~~R~~Ai~rl~~aL~~--~~i~Gv~Tni~~l~ 423 (447)
T PRK05586 364 LGVRLDSAI---------YSGYTIPPYYDSMIGKLIVYG--KDREEAIQKMKRALGE--FIIEGVKTNIDFQF 423 (447)
T ss_pred CCEEEECCC---------CCCCCCCCCCCCHHCEEEEEC--CCHHHHHHHHHHHHHC--CEEECCCCCHHHHH
T ss_conf 988987874---------587964886462232477988--9999999999999843--79979348799999
No 34
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=5.6e-45 Score=374.11 Aligned_cols=400 Identities=18% Similarity=0.265 Sum_probs=315.0
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE--------CCHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841--------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES--------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp--------lt~E~V~~I~~ 690 (1162)
|||||---|.+ .++.++++|++|++|+.|-+-+..-|.--..+|..|.-+ |..+.|+++..
T Consensus 3 ~kvLIANRGEI-----------A~Ri~rt~~elgi~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A~ 71 (449)
T PRK06111 3 QKVLIANRGEI-----------AVRIIRTCQKLGIRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIAK 71 (449)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHHH
T ss_conf 61899878799-----------9999999998499799991736456835874989888089974543339999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHH
Q ss_conf 7485678227998445124668--9888887598386127520331028678999888709866854--21121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~~ 766 (1162)
....+.+++|+ |..+.| +|+.++++|+.++|+++++|+.+.|+..+.+++.++|+|..|| +.+.+.+++++
T Consensus 72 ~~g~dAIHPGY-----GFLSEna~FA~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~~ 146 (449)
T PRK06111 72 KTGAEAIHPGY-----GLLSENASFAERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAIA 146 (449)
T ss_pred HHCCCEEECCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 83999997798-----7311698999999988998999299999986486999999998399855786777899999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|++||||||+|+|+++||+||++|++++||.+++..+- .++...|++.+|+++||+++++|+
T Consensus 147 ~a~~iGyPvliKAa~GGGGrGmriv~~~~el~~~~~~~~-----------------~eA~~~Fg~~~v~iEk~i~~~RHI 209 (449)
T PRK06111 147 IARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNK-----------------KRAANFFGNGEMYLEKYIEDARHI 209 (449)
T ss_pred HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH-----------------HHHHHHCCCCCEEEEEECCCCCEE
T ss_conf 998659802662035898672089579999999999999-----------------999986399602554413577337
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEE
Q ss_conf 101023079-8499985201102152457627981686689999999999999998741335762478851-28859998
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYIL 924 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVI 924 (1162)
||++++|+. ++.+. .|.-+....|.++.+...|++.|+++++++|.+++.+++++++++|++||||++ +++++|+|
T Consensus 210 EVQvl~D~~Gn~vhl--geRdCSiQRr~QKviEeaPap~l~~~~r~~~~~~A~~la~~v~Y~g~gTvEFl~d~~~~fyFl 287 (449)
T PRK06111 210 EIQLLADTHGNTVYL--WERECSVQRRHQKVIEEAPSPFLDEETRKAMGEAAVQAAKAIGYTNAGTIEFLVDNQKNFYFL 287 (449)
T ss_pred EEEEEECCCCCEEEE--ECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEE
T ss_conf 999997068888883--051226635774169978999999999999999999998871710246899999489868999
Q ss_pred EECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCE
Q ss_conf 52444456304567773988999999998597210024666677776668738997203883445999867077563101
Q gi|254780439|r 925 EVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTG 1004 (1162)
Q Consensus 925 EvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTG 1004 (1162)
|||||.++.+|.+..+||++|++.+.+++.|++|+.........+++.+.+.+| ..| -.|..-+|.=..+..- +|
T Consensus 288 EvNtRlQVEHpVTE~vtGiDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIe~Ri~A-Edp-~~f~Ps~G~i~~~~~P---~g 362 (449)
T PRK06111 288 EMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYA-EDP-KTFFPSPGKITDLTLP---GG 362 (449)
T ss_pred EEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHCCCCCEEHHHHHHC-CCC-CCCCCCCEEEEEEECC---CC
T ss_conf 534354446640455538848999999867998998966668561205555513-785-6578998699999848---99
Q ss_pred EEEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 377741999999999999838879887-----25999964412899999-99999988989999388899999
Q gi|254780439|r 1005 EVIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLE 1071 (1162)
Q Consensus 1005 EVmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~ 1071 (1162)
. |-..+.++ ..|..+|.. ++++ ++..|+.+.+. +.+.|.+ |.|..-.-+-.||+
T Consensus 363 ~----gvRvDs~~-----~~G~~v~~~yDsmlaKlI--~~g~~R~~Ai~rl~~aL~e--~~I~Gv~Tni~~l~ 422 (449)
T PRK06111 363 E----GVRHDHAV-----ENGVTVTPFYDPMIAKVI--AHGETREEAIARLHDALEE--LKVEGIKTNIPLLL 422 (449)
T ss_pred C----CEEEECCC-----CCCCEECCCCCCHHHEEE--EECCCHHHHHHHHHHHHHC--CEEECCCCCHHHHH
T ss_conf 9----88885366-----685970887565332567--9879999999999999851--69989438599999
No 35
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00 E-value=4.5e-44 Score=366.75 Aligned_cols=362 Identities=20% Similarity=0.326 Sum_probs=328.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE---------------------EEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999996598069960686521123245863---------------------7984167889999998748567822
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADR---------------------LYFESLTEEDILEILRVEQQKGELV 699 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDr---------------------LYFEplt~E~V~~I~~~E~p~g~~~ 699 (1162)
.++-+||.+|+|++||-| |.++|| =| |...+|+..++.-..+.+++
T Consensus 14 A~RIiRAC~ElGi~TVAV----------yS~aD~dalHV~LADEavCIGea~S~kSY---L~IpnI~aAA~~tG~~AiHP 80 (451)
T TIGR00514 14 ALRIIRACKELGIATVAV----------YSTADRDALHVLLADEAVCIGEAPSAKSY---LNIPNIIAAAEITGADAIHP 80 (451)
T ss_pred HHHHHHHHHHCCCCEEEE----------CCHHHHHHHHHHHHCCCCCCCCCHHHCCC---CHHHHHHHHHHHCCCCEECC
T ss_conf 889999888649863986----------00441332343430253006862211244---11588999887748807628
Q ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--C-CCCCHHHHHHHHHHCCCC
Q ss_conf 7998445124668--9888887598386127520331028678999888709866854--2-112156655565536971
Q gi|254780439|r 700 GIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--G-ISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 700 ~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~-~a~s~eea~~~a~~iGyP 774 (1162)
|+ |+...| .|.-++++|+.++|+++|+|-.+.|+....++|++.|+|..|| + .+.+.+|++..|++||||
T Consensus 81 GY-----GFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyP 155 (451)
T TIGR00514 81 GY-----GFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYP 155 (451)
T ss_pred CC-----CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 87-----7344312478898738826667871201126886899999974887662388886310278899999747896
Q ss_pred EEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 67513444456541255489999999997521013221111223333333345577774567022012010010102307
Q gi|254780439|r 775 LLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQN 854 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg 854 (1162)
|+|+.+...|||||+||..++||.+.+..| ..++..-|...-|+|||||++.+|+|+++++|+
T Consensus 156 v~IKA~AGGGGRGmR~vR~~~El~~~~~~a-----------------~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~ 218 (451)
T TIGR00514 156 VIIKATAGGGGRGMRVVREEDELVKLIKAA-----------------RAEAAAAFNNDGVYIEKFIENPRHVEIQVLADK 218 (451)
T ss_pred EEEEEECCCCCCEEEEECCHHHHHHHHHHH-----------------HHHHHHCCCCCCEEEEEEECCCCEEEEEEEECC
T ss_conf 899962589972258862868999999999-----------------999974028796278633369940799987517
Q ss_pred C-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCE-EEEEEECCCCC
Q ss_conf 9-84999852011021524576279816866899999999999999987413357624788512-885-99985244445
Q gi|254780439|r 855 D-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGK-IYILEVNPRAS 931 (1162)
Q Consensus 855 ~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~-iYVIEvNpRaS 931 (1162)
. |++..| |+-|......+.-+...|++-|+.+.+++|.+.+.+.|+.+||.|.++|+|+++ +++ ||++|||+|-+
T Consensus 219 ~GN~vyLg--ERDCSiQRR~QKllEEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~rFYFmEMNTRIQ 296 (451)
T TIGR00514 219 YGNVVYLG--ERDCSIQRRNQKLLEEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQRFYFMEMNTRIQ 296 (451)
T ss_pred CCCEEEEC--CCCCCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCEEEEEEECCEEE
T ss_conf 88878971--2146200046544654688877889999998999999986498003516888625887357765176021
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCC-CCCCCCCCCCCEEEEEEE
Q ss_conf 6304567773988999999998597210024666677776668738997203883445999-867077563101377741
Q gi|254780439|r 932 RTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGV-DILLGPEMRSTGEVIGID 1010 (1162)
Q Consensus 932 RtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~-D~~LGpEMkSTGEVmgig 1010 (1162)
..||.+..+||+||++-+.||+.|++|+..+.....++|+.+++..| ..|.-.|..-||- +..|.| .|.|
T Consensus 297 VEHPVTEmvtGvDL~keQirvA~G~~L~~kQe~v~~~GHaieCRINA-EDP~~~F~PsPG~i~~ylpP--------GG~g 367 (451)
T TIGR00514 297 VEHPVTEMVTGVDLIKEQIRVAAGEKLSLKQEDVKLRGHAIECRINA-EDPIKNFLPSPGRITSYLPP--------GGPG 367 (451)
T ss_pred EEECCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf 11032014600257888998737895664311479998899865145-58787786888501554687--------9752
Q ss_pred CCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHHHH-HHHHH
Q ss_conf 999999999999838879887-----2599996441289999999-99998
Q gi|254780439|r 1011 QDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVPII-QNFKK 1055 (1162)
Q Consensus 1011 ~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~~a-~~l~~ 1055 (1162)
...+-|.| +|+.+|++ |++. ++..++++++... |-|.+
T Consensus 368 VR~DSh~Y-----~gY~iPPyYDSmIaKlI--~~G~~R~~AI~rMKrAL~E 411 (451)
T TIGR00514 368 VRVDSHVY-----SGYTIPPYYDSMIAKLI--TYGKTREEAIARMKRALSE 411 (451)
T ss_pred EECCCEEC-----CCCCCCCCCHHCCEEEE--ECCCCHHHHHHHHHHHHHH
T ss_conf 20100344-----87876984020201246--4058988999999887542
No 36
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=100.00 E-value=1.5e-43 Score=362.69 Aligned_cols=328 Identities=19% Similarity=0.291 Sum_probs=291.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC-----------EEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf 999999999659806996068652112324586-----------379841678899999987485678227998445124
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIAD-----------RLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQT 709 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sD-----------rLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt 709 (1162)
.|+.+||||++|++||-|=+.|---|--=..+| --| |..+.|++|+++-....+++|| |+.
T Consensus 13 A~RiirTL~~lgi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esY---L~~dkil~~Ak~tGA~AI~PGY-----GFL 84 (1226)
T TIGR02712 13 AVRIIRTLRKLGIRSVAVYSDADRASQHVLDADEAVCLGGATAAESY---LDIDKILAIAKKTGAQAIHPGY-----GFL 84 (1226)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHH---CCHHHHHHHHHHCCCCEEECCC-----CCC
T ss_conf 99999998771863798632100215782360502605895413222---1478999999755893874588-----723
Q ss_pred HHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 668--988888759838612752033102867899988870986685-42112156655565536971675134444565
Q gi|254780439|r 710 PLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPR-NGISHSVEHARLIACEIGFPLLIRPSYVLGGR 786 (1162)
Q Consensus 710 ~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~-~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~ 786 (1162)
..| .|+.|+++|+.++|+++|.|....=++..++|....|+|..| .+...|++||+..|++||||||++.+...||-
T Consensus 85 SENA~FA~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGI 164 (1226)
T TIGR02712 85 SENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGI 164 (1226)
T ss_pred CCCHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 57877998998479578778706674438325689999966889888515587799999998646995479870787652
Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC-CEEEEEEECC
Q ss_conf 412554899999999975210132211112233333333455777745670220120100101023079-8499985201
Q gi|254780439|r 787 AMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND-QVIVVGIIEH 865 (1162)
Q Consensus 787 ~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~-~v~I~gimEH 865 (1162)
||+.|.|++||++..+.- +...+..|.|.-|.+|||+++|+||||+++.||+ +|+..| |+
T Consensus 165 Gl~~c~~~~eL~~aFe~V-----------------krlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLG--eR 225 (1226)
T TIGR02712 165 GLQKCDNAAELAEAFETV-----------------KRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALG--ER 225 (1226)
T ss_pred CCCCCCCHHHHHHHHHHH-----------------HHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEE--CC
T ss_conf 451118989999999998-----------------99886323635143403203784289987526973369971--16
Q ss_pred CCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 1021524576279816866899999999999999987413357624788512--88599985244445630456777398
Q gi|254780439|r 866 IEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK--DGKIYILEVNPRASRTVPFIAKAIGF 943 (1162)
Q Consensus 866 iE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k--d~~iYVIEvNpRaSRtvPfvSKatG~ 943 (1162)
=|......++.+..+|+++|+++++++|.++|.+|+++++|++.++|+|+++ .+++|+||||+|.+..||.+..+||+
T Consensus 226 DCSLQRRNQKVvEETPAP~LP~~~R~~L~~AA~~Lg~~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~VtGl 305 (1226)
T TIGR02712 226 DCSLQRRNQKVVEETPAPNLPEETRAALLAAAEKLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGL 305 (1226)
T ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECC
T ss_conf 75444456655872774686489999999999999997187637604774022108712113234111335730178464
Q ss_pred CHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCEEEEEEECCCHHHCCCC--CCCC
Q ss_conf 8999999998597210024666------677776668738997203883445999--8670
Q gi|254780439|r 944 PVAKVAARIIAGESLDASIAAY------GKRPDLSQIKHFAVKESVFPFNKFPGV--DILL 996 (1162)
Q Consensus 944 pl~~iAt~v~lG~~L~~~~~~~------~~~~~~~~~~~~aVK~pvFsF~k~~g~--D~~L 996 (1162)
||++++.|++.|+..+.-.... ...+++.+.+-|| .-|+-.|..-||. |+.+
T Consensus 306 DLVEWM~r~AAg~~p~~~~~~~~~~~~l~p~G~aiEaRvYA-EnP~k~F~PSpG~Lt~V~F 365 (1226)
T TIGR02712 306 DLVEWMVRIAAGELPDFDSLNIEIFDNLTPRGAAIEARVYA-ENPAKNFQPSPGLLTEVQF 365 (1226)
T ss_pred HHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCEEEEEEEEEE-ECCCCCCCCCCCEEEEEEC
T ss_conf 08989999716888885244300035788750389999844-0776777269860688772
No 37
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=100.00 E-value=1.8e-42 Score=354.12 Aligned_cols=402 Identities=19% Similarity=0.265 Sum_probs=322.2
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE-------CCHHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841-------678899999987
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES-------LTEEDILEILRV 691 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp-------lt~E~V~~I~~~ 691 (1162)
+||||=--|-+ .++.++++|++|++||.|-+.+..-|.--..+|.-|.-. |+.+.|.++.+.
T Consensus 3 ~kvLIANRGEI-----------A~Riirt~relgi~tVavys~~D~~s~hv~~Adea~~lg~~~~~sYLn~~~Ii~~A~~ 71 (478)
T PRK08463 3 HKILIANRGEI-----------AVRIIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKA 71 (478)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCCHHHHCCEEEECCCCHHHHHCCHHHHHHHHHH
T ss_conf 61789668699-----------9999999998399789997857657834775787665288734530699999999998
Q ss_pred HCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCC---CCCHHHHHH
Q ss_conf 485678227998445124668--988888759838612752033102867899988870986685421---121566555
Q gi|254780439|r 692 EQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGI---SHSVEHARL 766 (1162)
Q Consensus 692 E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~---a~s~eea~~ 766 (1162)
.+.+.+++|+ |+...| ++..++++|+.++|+++++|..+.|+..+.+++.+.|+|..||.. ..+.+++.+
T Consensus 72 ~gadAiHPGY-----GFLSEna~FA~~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~ 146 (478)
T PRK08463 72 CGADAIHPGY-----GFLSENYEFAKAVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKI 146 (478)
T ss_pred HCCCEEECCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 4999993687-----62346999999999789989994999999986489999999983998466767788767999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|+++|||||+++++..||+||++|+++++|.+.+..+.. +....+++.+|+++||+++++|+
T Consensus 147 ~a~~iGyPv~lKA~~GGGGrGmrvv~~~~el~~~~~~a~~-----------------ea~~~Fg~~~v~iEk~i~~~RHi 209 (478)
T PRK08463 147 FARKIGYPVILKASGGGGGRGIRVVWKEEDLENAFESCKR-----------------EAKAYFNNDEVFMEKYVVNPRHI 209 (478)
T ss_pred HHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEEECCCEEE
T ss_conf 9986598047840359998711785578999999999999-----------------99984699854788750245178
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CEEEEE
Q ss_conf 101023079-849998520110215245762798168668999999999999999874133576247885128-859998
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD-GKIYIL 924 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd-~~iYVI 924 (1162)
||++++|+. ++++.+ |+-+....+.++.+...|++.|+++++++|.+++.+++++++|.|+++++|++++ +++|+|
T Consensus 210 EVQvlgD~~Gnvi~l~--eRdCSiQRr~QKviEeaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~~fyFl 287 (478)
T PRK08463 210 EFQILGDNYGNIIHLC--ERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNNFYFM 287 (478)
T ss_pred EEEEEEECCCCEEEEE--EEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEE
T ss_conf 9999861799788963--05134334675168966999878899999988998766630516653389888389978999
Q ss_pred EECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCE
Q ss_conf 52444456304567773988999999998597210024666677776668738997203883445999867077563101
Q gi|254780439|r 925 EVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTG 1004 (1162)
Q Consensus 925 EvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTG 1004 (1162)
|||||.+..+|.+.-+||++|++.+.+++.|++|.-........+++.+.+.++ ..|.-.|..-||.=..+-| ..|
T Consensus 288 EmNtRlQVEHpVTE~vTGvDLV~~Qi~iA~G~~L~~~q~~i~~~GhAIE~RI~A-Edp~~~F~Ps~G~i~~~~~---p~g 363 (478)
T PRK08463 288 EMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITA-ENVWKNFIPSPGKITGYYP---ALG 363 (478)
T ss_pred EEECCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCCCCEEEEEEEC---CCC
T ss_conf 607554556654110038868999999867998885400346674599999851-4776674658748878972---899
Q ss_pred EEEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHH-HHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf 377741999999999999838879887-----25999964412899999-999999889899993888999998
Q gi|254780439|r 1005 EVIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVP-IIQNFKKLGFKIMATEGTARFLES 1072 (1162)
Q Consensus 1005 EVmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~-~a~~l~~lGf~l~AT~GTa~~L~~ 1072 (1162)
.-.-+|... ..|..+|.. ++++ ++..|+.+.+. +.+-|. .|.|..-.-+-.||+.
T Consensus 364 ~gvRvDs~~---------~~G~~v~~~yDsmiaKlI--~~g~~R~~Ai~rl~~AL~--e~~I~Gv~Tni~~l~~ 424 (478)
T PRK08463 364 PSVRVDSHI---------YKDYTIPPFYDSMLAKLI--VKATSYDLAVNKLERALK--EFTIEGVRTTIPFLIA 424 (478)
T ss_pred CCEEEECCC---------CCCCCCCCCCCHHHCEEE--EECCCHHHHHHHHHHHHH--CCEEECCCCCHHHHHH
T ss_conf 998980886---------786980897570453488--988999999999999972--6699895585999999
No 38
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=100.00 E-value=1.2e-42 Score=355.62 Aligned_cols=301 Identities=21% Similarity=0.360 Sum_probs=273.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE----------E-----------EEE----CCHHHHHHHHHHHCCCCC
Q ss_conf 999999965980699606865211232458637----------9-----------841----678899999987485678
Q gi|254780439|r 643 HASFSLKEAGFETIMINCNPETVSTDYDIADRL----------Y-----------FES----LTEEDILEILRVEQQKGE 697 (1162)
Q Consensus 643 ~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrL----------Y-----------FEp----lt~E~V~~I~~~E~p~g~ 697 (1162)
+-=||..|+|++||-| |..-||| | ..| |+.+.|.+|+++.+-+.+
T Consensus 13 RvFRAa~EL~i~tVAv----------Ys~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDai 82 (1169)
T TIGR01235 13 RVFRAANELGIRTVAV----------YSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDAI 82 (1169)
T ss_pred HHHHHHHHCCCCEEEE----------EEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 4642310138726999----------653157455740234100114763101026872130471569899600789777
Q ss_pred CCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHCCC
Q ss_conf 227998445124668--9888887598386127520331028678999888709866854--211215665556553697
Q gi|254780439|r 698 LVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHARLIACEIGF 773 (1162)
Q Consensus 698 ~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~~~a~~iGy 773 (1162)
++|+ |....| .|..+.++|+.+||++++.+|...|+.+.+++..+.|||..|+ +.+.+.+||..|++++||
T Consensus 83 HPGY-----GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GY 157 (1169)
T TIGR01235 83 HPGY-----GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGY 157 (1169)
T ss_pred ECCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 0885-----62248878999998689567379747775405768999888877887636886875259999999975699
Q ss_pred CEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 16751344445654125548999999999752101322111122333333334557777456702201201001010230
Q gi|254780439|r 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853 (1162)
Q Consensus 774 PVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D 853 (1162)
|||++.||..|||||+||.+++|+++-+.+| .+++...|+...|+|||||+++|||||+++.|
T Consensus 158 Pvi~KAs~GGGGRGMRvvR~~~dv~~~~~rA-----------------~sEA~AAFGnd~~yvEklie~pkHiEvQ~LGD 220 (1169)
T TIGR01235 158 PVIIKASYGGGGRGMRVVRSEEDVADAFQRA-----------------KSEAKAAFGNDEVYVEKLIERPKHIEVQLLGD 220 (1169)
T ss_pred CEEEEECCCCCCCCCEEECCHHHHHHHHHHH-----------------HHHHHHCCCCCEEEEEEECCCCCEEEEEEEEC
T ss_conf 5898721688972016860756799998887-----------------68873104898069851024882078987634
Q ss_pred C-CCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC--EEEEEEECCCC
Q ss_conf 7-98499985201102152457627981686689999999999999998741335762478851288--59998524444
Q gi|254780439|r 854 N-DQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDG--KIYILEVNPRA 930 (1162)
Q Consensus 854 g-~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~--~iYVIEvNpRa 930 (1162)
. +||++ ..|+=|......+..+.++|+.+||.+.+++|.+++.|||++.||++.++++|+++++ ++|+||||||.
T Consensus 221 ~~GNVVH--LFERDCSVQRRhQKVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpRi 298 (1169)
T TIGR01235 221 KHGNVVH--LFERDCSVQRRHQKVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPRI 298 (1169)
T ss_pred CCCCEEE--EEECCCCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCE
T ss_conf 8898788--87507762000550788678877888899999999999987428988872488555488937789988800
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCEEEEE
Q ss_conf 56304567773988999999998597210--024666677776668738997
Q gi|254780439|r 931 SRTVPFIAKAIGFPVAKVAARIIAGESLD--ASIAAYGKRPDLSQIKHFAVK 980 (1162)
Q Consensus 931 SRtvPfvSKatG~pl~~iAt~v~lG~~L~--~~~~~~~~~~~~~~~~~~aVK 980 (1162)
+..|-.+.-+||+|+++.+.+|+-|.+|. +++++.... ....-||+-
T Consensus 299 QVEHTvTE~iTGiDiV~aQI~va~G~sL~~~~~g~~~Q~~---I~t~GyAiQ 347 (1169)
T TIGR01235 299 QVEHTVTEEITGIDIVQAQIRVAEGASLPSKQLGVPEQED---IKTRGYAIQ 347 (1169)
T ss_pred EEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCC---EEEEEEEEE
T ss_conf 0115586467340377789999655746877577886544---035014887
No 39
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=7.6e-42 Score=349.14 Aligned_cols=207 Identities=43% Similarity=0.652 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88999999998789888620002344333332333333344444444333322211111123344444445544489999
Q gi|254780439|r 128 DRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAV 207 (1162)
Q Consensus 128 dR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 207 (1162)
||..|+++|.++|+|+|+++.+ .++|.++
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~---------------------------------------------------~~~s~ee 29 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAG---------------------------------------------------PVETEEE 29 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCC---------------------------------------------------CCCCHHH
T ss_conf 9899999999869891998788---------------------------------------------------8799999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEEEEECCCCEEE
Q ss_conf 9999987199699941326786645111699999999998998579----982798664499789999999728998899
Q gi|254780439|r 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASP----TTEVLIEESVLGWKEYELEMMRDIKGNCIV 283 (1162)
Q Consensus 208 a~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~----~~~vlIeksl~g~kEiE~eVirD~~gn~i~ 283 (1162)
|.++|++|||||||||++++||+|+.+|+|.+||.+++++++..++ .++|+||+||.|++|+++++++|++|++++
T Consensus 30 ~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~ 109 (211)
T pfam02786 30 ALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCIT 109 (211)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEE
T ss_conf 99999985997899737778998751241277899999999875143169983899740477658999999827998999
Q ss_pred EEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHH
Q ss_conf 96300000010000101343373228988999999999999987183457646899995589849998504443103578
Q gi|254780439|r 284 VCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSAL 363 (1162)
Q Consensus 284 v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssal 363 (1162)
+|.++|.+| .|+|+++.++|+++|+++++++|+++|.|++++||+ .|.+||||.+++.++++||||||||+|++.++
T Consensus 110 ~~~~~~~~~--~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~-~G~~~vef~~~~~~~~~~~iEvNpR~~~~~~~ 186 (211)
T pfam02786 110 VCNRECSDQ--RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGY-VGAGTVEFALDPFSGEYYFIEMNTRLQVSHAL 186 (211)
T ss_pred EEEEEEEEE--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE-ECCCEEEEEEECCCCEEEEEECCCCCCCHHHH
T ss_conf 996332250--335844468179999999999999999998752644-23324789996799959999670896834778
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8876346147677764134461013
Q gi|254780439|r 364 ASKATGFPIAKIAAKLAVGYTLDEL 388 (1162)
Q Consensus 364 askatgypia~vaakl~~G~~L~ei 388 (1162)
.+++|||++++.++++++|++|+||
T Consensus 187 t~~~tg~~l~~~~~~~a~G~~l~e~ 211 (211)
T pfam02786 187 AEKATGYDLAKEAAKIALGYPLPEL 211 (211)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 8998794899999999779997869
No 40
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=8.2e-40 Score=333.03 Aligned_cols=371 Identities=20% Similarity=0.273 Sum_probs=306.0
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE--E-------CCHHHHHHH
Q ss_conf 7418997276302014766531899999999965980699606865211232458637984--1-------678899999
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE--S-------LTEEDILEI 688 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE--p-------lt~E~V~~I 688 (1162)
=+||||---|-+ .++.+|+++++|++||.|-+....-|.--..+|.-|.- + |..+.|.++
T Consensus 5 ~~kvLiANRGEI-----------A~Ri~Ra~~elgi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii~~ 73 (1147)
T PRK12999 5 IKKVLVANRGEI-----------AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEIIRV 73 (1147)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHHHH
T ss_conf 878999668199-----------999999999839958999784645782588588567728999713111299999999
Q ss_pred HHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHH
Q ss_conf 987485678227998445124668--98888875983861275203310286789998887098668542--11215665
Q gi|254780439|r 689 LRVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHA 764 (1162)
Q Consensus 689 ~~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea 764 (1162)
.+..+.+.+++|+ |+...| +|+.++++|+.++|++++.|..+.|+...++++.+.|+|..+|. .+++.+++
T Consensus 74 A~~~~~dAiHPGY-----GFLSEn~~Fa~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~~~ 148 (1147)
T PRK12999 74 AKQAGVDAIHPGY-----GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLEEA 148 (1147)
T ss_pred HHHHCCCEEECCC-----CHHHCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 9994989997796-----22007999999999878999894999999855999999999983989888989988999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 55655369716751344445654125548999999999752101322111122333333334557777456702201201
Q gi|254780439|r 765 RLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAM 844 (1162)
Q Consensus 765 ~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~ 844 (1162)
.++|+++|||||+++++..|||||++|+++++|++.+..+-. ++...|++..|+++||+++++
T Consensus 149 ~~~a~~iGyPv~iKA~~GGGGrGmrvv~~~~~l~~~~~~a~~-----------------EA~~aFG~~~v~~Ek~i~~~r 211 (1147)
T PRK12999 149 LEFAEEIGYPLMLKASAGGGGRGMRIVRSEEELEEAFERAKR-----------------EAKAAFGNDEVYLEKYVENPR 211 (1147)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCCCEEEEEECCCCC
T ss_conf 999987199789997778980514895898999999999999-----------------999836997568855036786
Q ss_pred EEEEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCEEE
Q ss_conf 00101023079-8499985201102152457627981686689999999999999998741335762478851-288599
Q gi|254780439|r 845 EIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIY 922 (1162)
Q Consensus 845 EiEVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~~iY 922 (1162)
||||++++|+. ++++. .|+-|....+.+.-+...|+..|+++.+++|.+.+.++++++++.|+++++|++ .++++|
T Consensus 212 HiEvQilgD~~Gnvvhl--~eRdCSiQRR~QKviEeaPap~l~~~~r~~l~~~A~~~a~~v~Y~~aGTvEFL~d~~~~fy 289 (1147)
T PRK12999 212 HIEVQILGDKHGNVVHL--YERDCSVQRRHQKVVEIAPAPGLSPELREEICEAAVKLARAVGYVNAGTVEFLVDADGNFY 289 (1147)
T ss_pred EEEEEEEECCCCCEEEE--CCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEE
T ss_conf 47999996288988871--4765643223513578668999999999999999999999769764322789983888789
Q ss_pred EEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCCCEEEEEEECCCHHHCCCCCCCC
Q ss_conf 985244445630456777398899999999859721002466------66777766687389972038834459998670
Q gi|254780439|r 923 ILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAA------YGKRPDLSQIKHFAVKESVFPFNKFPGVDILL 996 (1162)
Q Consensus 923 VIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~------~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~L 996 (1162)
+||||||.+..||.+.-+||++|++.+.+++.|++|.+.... ....+++.+++.++ ..|.=.|..-+|.-..+
T Consensus 290 FiE~N~RlQVEH~VTE~vtGiDlV~~Qi~iA~G~~L~~~~~~~~~Q~~i~~~G~Aie~Ri~a-Edp~~~F~P~~G~i~~~ 368 (1147)
T PRK12999 290 FIEVNPRIQVEHTVTEMVTGIDIVQSQILIAEGATLGDLEVGIPSQEDIRLRGHAIQCRITT-EDPANNFMPDTGRITAY 368 (1147)
T ss_pred EEEEECCCCCCCCCHHHEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-CCCCCCCCCCCCEEEEE
T ss_conf 99866565645653021015508999999857997566767877544677664899999861-17752567887740378
Q ss_pred ----CC--CCCC----C------------EEEEEEECCHHHHHHHHHHHC
Q ss_conf ----77--5631----0------------137774199999999999983
Q gi|254780439|r 997 ----GP--EMRS----T------------GEVIGIDQDFPLAFAKSQLGI 1024 (1162)
Q Consensus 997 ----Gp--EMkS----T------------GEVmgig~~~~eA~~Ka~~a~ 1024 (1162)
|| ..-| + .-++..|.++.+|..|...|-
T Consensus 369 ~~p~G~gvR~D~g~~~~G~~v~p~yDsllaK~i~~g~~r~~ai~r~~raL 418 (1147)
T PRK12999 369 RSPGGFGVRLDGGNAYAGAVITPYYDSLLVKLTTWGRTFEEAIARMDRAL 418 (1147)
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHEEECCCHHHHHHHHHHHH
T ss_conf 46999998967786767896688757042522266698999999999986
No 41
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=312.05 Aligned_cols=292 Identities=24% Similarity=0.375 Sum_probs=243.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCC-----HHHHHHHHHHHC
Q ss_conf 699997677542050546668889999999987978999748765010784513100433799-----999999998628
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPIT-----PEVVAKIIEKER 82 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt-----~e~v~~Ii~~E~ 82 (1162)
.+|||.|+|. ++..+++||+.++...+|++++.+.++....||+.|+.|.. .+.+.+|+++|+
T Consensus 2 ~nILvt~~G~------------~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~ 69 (325)
T PRK12767 2 MNILVTSAGR------------RVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKEN 69 (325)
T ss_pred CEEEEECCCC------------HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 4899986786------------8999999997699859999689989953445488998788898789999999999879
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
+|+|+|+......+ ++.... .|++.||+++++++++|+.+.||.+|.++|++.|+|+|+++...
T Consensus 70 id~iiP~~d~El~~-la~~~~---~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~------------ 133 (325)
T PRK12767 70 IDALIPLIDPELPL-LAQHRD---EFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPE------------ 133 (325)
T ss_pred CCEEEECCCHHHHH-HHHHHH---HHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC------------
T ss_conf 99999778502668-999999---99967998956979999985499999999997599989820558------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 33334444444433332221111112334444444554448999999-99987199699941326786645111699999
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAV-QALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~-~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL 241 (1162)
+.+++. .+++++|||++|||.++.||+|+.+++|.+||
T Consensus 134 -----------------------------------------~~~~~~~~~~~~~~fP~vvKP~~g~gs~Gv~~i~~~~el 172 (325)
T PRK12767 134 -----------------------------------------DLEDLLKALAEELGFPLIVKPRDGSGSIGVFKVNNREEL 172 (325)
T ss_pred -----------------------------------------CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHH
T ss_conf -----------------------------------------999999999865699669853567887754997999999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99999899857998279866449978999999972899889996300000010000101343373228988999999999
Q gi|254780439|r 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAA 321 (1162)
Q Consensus 242 ~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a 321 (1162)
..+.++ ..+++|+++|.| +|+.+++++|.+|+++.++.++.+. ++.|++. ++.|..+ +.+++.+
T Consensus 173 ~~~~~~------~~~~ivqe~i~G-~E~tvdv~~d~~g~~~~~~~~~r~~---~~~G~~~---~~~~~~~---~~l~~~~ 236 (325)
T PRK12767 173 EFLLRY------NPNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIE---VRAGETS---KGVTVKN---PELFKLA 236 (325)
T ss_pred HHHHHH------CCCEEEEECCCC-CEEEEEEEEECCCCEEEEEEEEECC---CCCCCCC---CCEECCH---HHHHHHH
T ss_conf 999974------897498703489-8899999997899999999987336---4457867---7530579---9999999
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC-CCCC
Q ss_conf 999987183457646899995589849998504443103578887634614767776413446-1013
Q gi|254780439|r 322 IAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYT-LDEL 388 (1162)
Q Consensus 322 ~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~-L~ei 388 (1162)
.+++++||+ .|.+||||.++ ++++|+||+|||+|.+++|+ -+.|+.....+.+..+|.. +++.
T Consensus 237 ~~i~~~l~~-~G~~~vq~~~~--~g~~~iiEiNPRf~g~~~l~-~~aG~n~p~~~~~~~lg~~~~~~~ 300 (325)
T PRK12767 237 ERIAEKLGA-RGPLNIQCFVV--DGEPYLFEINPRFGGGYPLR-AMAGFNEPDILIRNLLGGENIPII 300 (325)
T ss_pred HHHHHHCCC-CCEEEEEEEEE--CCEEEEEEEECCCCCCHHHH-HHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 999998198-54599999998--99699999978878646739-883989999999998499989875
No 42
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=5.5e-38 Score=318.55 Aligned_cols=402 Identities=19% Similarity=0.298 Sum_probs=320.5
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE-EEEE-------CCHHHHHHHHH
Q ss_conf 418997276302014766531899999999965980699606865211232458637-9841-------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRL-YFES-------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrL-YFEp-------lt~E~V~~I~~ 690 (1162)
+||||---|-+ .|+.++++|++|+.||-|-+.|..=+.--..+|-- +.-| |..+.|++.++
T Consensus 3 ~KiLIANRGEI-----------AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~ 71 (645)
T COG4770 3 SKILIANRGEI-----------ACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAAR 71 (645)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHHH
T ss_conf 24887246434-----------6899999998099569997257778526664122443179960121226889999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHH
Q ss_conf 7485678227998445124668--9888887598386127520331028678999888709866854--21121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~~ 766 (1162)
+-..+.+++|+ |+...| .+..++++|+.++|+|+.+|..+.|+....+++.+.|+|..|+ +...+.+++..
T Consensus 72 ~tGA~AIHPGY-----GFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~ 146 (645)
T COG4770 72 RTGAQAIHPGY-----GFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVA 146 (645)
T ss_pred HHCCCCCCCCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 73832136884-----2123598999999977918978897999984467999999997499806897874458999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
+|++|||||||++|...||+||++|++.+|+.+.+..+- .+.+..|++..|+|+||++..+||
T Consensus 147 ~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sar-----------------rEA~asFGddrv~iEkyl~~PRHI 209 (645)
T COG4770 147 IAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESAR-----------------REAKASFGDDRVFIEKYLDKPRHI 209 (645)
T ss_pred HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH-----------------HHHHHHCCCCEEEHHHHCCCCCEE
T ss_conf 998639858999636899775376268899999999999-----------------998850488647624551787448
Q ss_pred EEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEEE
Q ss_conf 101023079-84999852011021524576279816866899999999999999987413357624788512-8859998
Q gi|254780439|r 847 DVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIYIL 924 (1162)
Q Consensus 847 EVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iYVI 924 (1162)
|++++.|+. |+++. .|+-|....+.++.+...|++-|++++++.|.+++.++|++.||.|.++|+|++. |+.||++
T Consensus 210 EiQV~aD~HGNvv~L--gERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~Fl 287 (645)
T COG4770 210 EIQVFADQHGNVVHL--GERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFL 287 (645)
T ss_pred EEEEEECCCCCEEEE--ECCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEE
T ss_conf 999986277878886--325332423112232008999999999999999999999862977575589998389868999
Q ss_pred EECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCC----CCCC
Q ss_conf 524444563045677739889999999985972100246666777766687389972038834459998670----7756
Q gi|254780439|r 925 EVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILL----GPEM 1000 (1162)
Q Consensus 925 EvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~L----GpEM 1000 (1162)
|||+|.+..+|.+.-+||++|++++.|++.|++|+-.+.+..+.+++.+.+.|+ ..|-=.|..-+|-=..+ ||-+
T Consensus 288 EMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyA-EDp~r~FLPs~G~l~~~~~P~~~~v 366 (645)
T COG4770 288 EMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYA-EDPARGFLPSTGRLTRYRPPAGPGV 366 (645)
T ss_pred EEECCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCCCCCEEEEECCCCCCCE
T ss_conf 862202025641224201389999999743885776656654465057888733-4755576678850576628888843
Q ss_pred C-CCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHH-HHHHHCCCEEEEEHHHHHHHHH
Q ss_conf 3-1013777419999999999998388798872599996441289999999-9999889899993888999998
Q gi|254780439|r 1001 R-STGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPII-QNFKKLGFKIMATEGTARFLES 1072 (1162)
Q Consensus 1001 k-STGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv~d~dK~~~~~~a-~~l~~lGf~l~AT~GTa~~L~~ 1072 (1162)
+ -||=.- |.. -.-||.+|+|. +.++..|+++.+.-. +.|. .|.+........||+.
T Consensus 367 RvDsGV~~--G~~-Is~~YDpMiAK-----------Li~~G~dR~eAl~rl~~AL~--~~~v~Gi~tn~~Fl~a 424 (645)
T COG4770 367 RVDSGVRE--GDE-ISPFYDPMIAK-----------LIVHGADREEALDRLRRALA--EFEVEGIATNIPFLRA 424 (645)
T ss_pred ECCCCCCC--CCC-CCCCCCHHHHH-----------HHHCCCCHHHHHHHHHHHHH--HHEECCCCCCHHHHHH
T ss_conf 12367433--872-35553558888-----------86438889999999999998--6084474146999999
No 43
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=3.4e-36 Score=304.34 Aligned_cols=390 Identities=19% Similarity=0.267 Sum_probs=313.4
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE--------CCHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841--------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES--------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp--------lt~E~V~~I~~ 690 (1162)
+||||...|- -.+...++++++|++||-|-+.|.-=+--.-.+|--|.=. +..+.++...+
T Consensus 3 ~kiLIanrGe-----------ia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~ 71 (449)
T COG0439 3 KKILIANRGE-----------IAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAE 71 (449)
T ss_pred CEEEEECCCH-----------HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 3699955853-----------68999999998498589996610022525663756798388650345651888998998
Q ss_pred HHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 7485678227998445124668--98888875983861275203310286789998887098668542--1121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG--ISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~--~a~s~eea~~ 766 (1162)
....+.++.|+ |.+..| ++..++++|+.++|.++++|..+.|+.+-.+++.+.|+|+|+|. .+.+.+|+.+
T Consensus 72 ~~gadai~pGy-----gflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~ 146 (449)
T COG0439 72 ETGADAIHPGY-----GFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALA 146 (449)
T ss_pred HCCCCEECCCC-----HHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 60876672350-----3421788999999974975108498999974458999999997499958997877688899999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 65536971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
.|++|||||+|+|++..||+||++|+|.++|...+..+... ....+++.-|+++||+++.+++
T Consensus 147 ~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~e-----------------a~~~fg~~~v~iEk~i~~~rhi 209 (449)
T COG0439 147 IAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGE-----------------AEAAFGNPRVYLEKFIEGPRHI 209 (449)
T ss_pred HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHH-----------------HHHHCCCCCEEEEEECCCCCEE
T ss_conf 99871997899977889965479979999999999999988-----------------8875589727863410588468
Q ss_pred EEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEEEE
Q ss_conf 10102307984999852011021524576279816866899999999999999987413357624788512-88599985
Q gi|254780439|r 847 DVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIYILE 925 (1162)
Q Consensus 847 EVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iYVIE 925 (1162)
|++++.||....|....-|+... ...+.-+...|...+.++.+++|...+.+.++.+++.|+.+++|++. ++++|+||
T Consensus 210 evqv~gD~~g~~i~l~eRdcsiq-rr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiE 288 (449)
T COG0439 210 EVQVLGDGHGNVIHLGERDCSIQ-RRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIE 288 (449)
T ss_pred EEEEEECCCCCEEEEEECCCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEE
T ss_conf 99998768665899986466876-77661553058888999999999999999998638777756999982799879999
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEE
Q ss_conf 24444563045677739889999999985972100246666777766687389972038834459998670775631013
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGE 1005 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGE 1005 (1162)
||||.++.+|.+..+||++|++...++++|+.|+-...+.....++.+.+.+ ...|.+.|.+.||.-..+-+. +|.
T Consensus 289 mN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~-aedp~~~f~pspG~i~~~~~P---~g~ 364 (449)
T COG0439 289 MNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRIN-AEDPLGNFLPSPGKITRYAPP---GGP 364 (449)
T ss_pred EECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEE-CCCCCCCCCCCCCEEEEECCC---CCC
T ss_conf 8641136763010000042899999997699888777775613313100010-568887857899765014079---988
Q ss_pred EEEEECCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 77741999999999999838879887-----2599996441289999999999988
Q gi|254780439|r 1006 VIGIDQDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVPIIQNFKKL 1056 (1162)
Q Consensus 1006 Vmgig~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~~a~~l~~l 1056 (1162)
-.-++.. ..+|.++|.+ |++++...+++ ..+....+.|.++
T Consensus 365 gvr~d~~---------~~~~~~i~~~yds~i~k~i~~~~~r~-~ai~~~~~aL~e~ 410 (449)
T COG0439 365 GVRVDSG---------VYDGYRVPPYYDSMIGKVIVHGRTRD-EAIARMRRALDEL 410 (449)
T ss_pred CEEEEEE---------CCCCCCCCCCHHHHEEEEEEECCCHH-HHHHHHHHHHHHE
T ss_conf 6688732---------13585248641401368999648869-9999999878762
No 44
>pfam02787 CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain.
Probab=100.00 E-value=1.2e-39 Score=331.66 Aligned_cols=122 Identities=44% Similarity=0.800 Sum_probs=116.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99976079824899999999738978899877188989999999999999987530376027999986533799889998
Q gi|254780439|r 479 LRSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSI 558 (1162)
Q Consensus 479 l~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~ 558 (1162)
|++.|++|+|+|||+|++|||+|+|+++||++|+||||||+||++||++|+.|++.. +.+.+.|++||++||||.|||+
T Consensus 1 l~~~L~~p~~~Rl~~i~eAlr~G~sveeI~~~TkID~wFL~~i~~Iv~~e~~l~~~~-~~~~~~l~~aK~~GFSD~~IA~ 79 (122)
T pfam02787 1 LLEKLRHPTDERIFAIAEALRRGYSVEEIHELTKIDPWFLEKIKEIVELEKELKKGD-PLSDDLLLKAKKLGFSDAQIAK 79 (122)
T ss_pred CHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHCCCHHHHHH
T ss_conf 957775899359999999999599999999988968999999999999999998548-9999999999994999899998
Q ss_pred HHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 8589999999889863984799862143244366585589720
Q gi|254780439|r 559 LSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTY 601 (1162)
Q Consensus 559 l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY 601 (1162)
+|++++.+||++|+++||+|+||+||||||||+|.||||||||
T Consensus 80 l~~~~e~~Ir~~R~~~~i~P~yk~VDTcAaEF~a~TpY~YSTY 122 (122)
T pfam02787 80 LLGVTEEEVRKLRKELGIRPVYKMVDTCAAEFEAKTPYYYSTY 122 (122)
T ss_pred HHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 8398699999999987991226210385205577998555259
No 45
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.43 Aligned_cols=286 Identities=22% Similarity=0.367 Sum_probs=247.2
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHC
Q ss_conf 418997276302014766531899999999965980699606865211232458637984167-----889999998748
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLT-----EEDILEILRVEQ 693 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt-----~E~V~~I~~~E~ 693 (1162)
.+|||.|.|- .|+.+++||+.+++..+|++++.+.++....+|+.|+.|.. .+.+++|+++|+
T Consensus 2 ~nILvt~~G~------------~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~ 69 (325)
T PRK12767 2 MNILVTSAGR------------RVQLVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKEN 69 (325)
T ss_pred CEEEEECCCC------------HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 4899986786------------8999999997699859999689989953445488998788898789999999999879
Q ss_pred CCCCCCEEEEECCCHHHH--HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHH
Q ss_conf 567822799844512466--898888875983861275203310286789998887098668542112156655-56553
Q gi|254780439|r 694 QKGELVGIIVQFGGQTPL--KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHAR-LIACE 770 (1162)
Q Consensus 694 p~g~~~~vi~q~gGqt~~--~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~-~~a~~ 770 (1162)
++. ++......++. ..+..|++.|++++++++++++.+.|+.+|.+++.+.|+|.|+.....+.+++. .++++
T Consensus 70 id~----iiP~~d~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~ 145 (325)
T PRK12767 70 IDA----LIPLIDPELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAEE 145 (325)
T ss_pred CCE----EEECCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999----9977850266899999999967998956979999985499999999997599989820558999999999865
Q ss_pred CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 69716751344445654125548999999999752101322111122333333334557777456702201201001010
Q gi|254780439|r 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDA 850 (1162)
Q Consensus 771 iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDa 850 (1162)
+|||++|+|++..||+++.+++|.+||+.++... .++++++|+. ++|+.||+
T Consensus 146 ~~fP~vvKP~~g~gs~Gv~~i~~~~el~~~~~~~---------------------------~~~ivqe~i~-G~E~tvdv 197 (325)
T PRK12767 146 LGFPLIVKPRDGSGSIGVFKVNNREELEFLLRYN---------------------------PNLIIQEFIE-GQEYTVDV 197 (325)
T ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHC---------------------------CCEEEEECCC-CCEEEEEE
T ss_conf 6996698535678877549979999999999748---------------------------9749870348-98899999
Q ss_pred EEECCCEEE-EEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 230798499-9852011021524576279816866899999999999999987413357624788512885999852444
Q gi|254780439|r 851 LCQNDQVIV-VGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929 (1162)
Q Consensus 851 i~Dg~~v~I-~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpR 929 (1162)
++|.+..++ ....+++ .+|+|++. ++.+..+ +++.+.+.+++++|+..|++|+||.++++++|+||+|||
T Consensus 198 ~~d~~g~~~~~~~~~r~---~~~~G~~~---~~~~~~~---~~l~~~~~~i~~~l~~~G~~~vq~~~~~g~~~iiEiNPR 268 (325)
T PRK12767 198 LCDLNGEVISIVPRKRI---EVRAGETS---KGVTVKN---PELFKLAERIAEKLGARGPLNIQCFVVDGEPYLFEINPR 268 (325)
T ss_pred EEECCCCEEEEEEEEEC---CCCCCCCC---CCEECCH---HHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECC
T ss_conf 99789999999998733---64457867---7530579---999999999999819854599999998996999999788
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 45630456777398899999999859721
Q gi|254780439|r 930 ASRTVPFIAKAIGFPVAKVAARIIAGESL 958 (1162)
Q Consensus 930 aSRtvPfvSKatG~pl~~iAt~v~lG~~L 958 (1162)
+|.++||...+ |+++++++.+.++|+..
T Consensus 269 f~g~~~l~~~a-G~n~p~~~~~~~lg~~~ 296 (325)
T PRK12767 269 FGGGYPLRAMA-GFNEPDILIRNLLGGEN 296 (325)
T ss_pred CCCCHHHHHHH-CCCHHHHHHHHHCCCCC
T ss_conf 78646739883-98999999999849998
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=8e-36 Score=301.43 Aligned_cols=370 Identities=21% Similarity=0.295 Sum_probs=307.7
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE-----E----CCHHHHHHHH
Q ss_conf 418997276302014766531899999999965980699606865211232458637984-----1----6788999999
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE-----S----LTEEDILEIL 689 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE-----p----lt~E~V~~I~ 689 (1162)
+||+|---|-+ .++.-|+..|+|++|+-|-+.-.+-|.----+|--|.= | |+.|.|.+|.
T Consensus 8 ~KvLVANRgEI-----------AIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iA 76 (1149)
T COG1038 8 KKVLVANRGEI-----------AIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIA 76 (1149)
T ss_pred HEEEEECCCHH-----------HHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHHHHHH
T ss_conf 20255045336-----------6999998886086489985144543044303551066067887268743299999999
Q ss_pred HHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHH
Q ss_conf 87485678227998445124668--9888887598386127520331028678999888709866854--2112156655
Q gi|254780439|r 690 RVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHAR 765 (1162)
Q Consensus 690 ~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~ 765 (1162)
++.+.+.+.+|+ |....| +|+.|.++|+.++|++++.+|+..|+.+...+..+.|+|..++ +.+.+++|++
T Consensus 77 k~~gaDaIhPGY-----GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~ 151 (1149)
T COG1038 77 KRSGADAIHPGY-----GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEAL 151 (1149)
T ss_pred HHCCCCEECCCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 970887313784-----324479899999997597896888799988442888999999759985569999821299999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 56553697167513444456541255489999999997521013221111223333333345577774567022012010
Q gi|254780439|r 766 LIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAME 845 (1162)
Q Consensus 766 ~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~E 845 (1162)
+||+++||||+|+.|...|||||++|.++++|.+.+++| ++++...|++..|+|+||++++||
T Consensus 152 ~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~A-----------------ksEAkaAFG~~eVyvEk~ve~pkH 214 (1149)
T COG1038 152 EFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERA-----------------KSEAKAAFGNDEVYVEKLVENPKH 214 (1149)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH-----------------HHHHHHHCCCCCEEHHHHHCCCCE
T ss_conf 999866985899971479866526625888999999998-----------------899997418980665655248652
Q ss_pred EEEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-EEEE
Q ss_conf 0101023079-8499985201102152457627981686689999999999999998741335762478851288-5999
Q gi|254780439|r 846 IDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDG-KIYI 923 (1162)
Q Consensus 846 iEVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~-~iYV 923 (1162)
|||+++.|.. |+++ ..|+-|......+..+.+.|++.|+++.+++|++.+.|||++.+++|.++++|+++++ ++|+
T Consensus 215 IEVQiLgD~~GnvvH--LfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyF 292 (1149)
T COG1038 215 IEVQILGDTHGNVVH--LFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYF 292 (1149)
T ss_pred EEEEEEECCCCCEEE--EEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEE
T ss_conf 689986057787888--862355331014403785688889999999999999999997397656647888738886899
Q ss_pred EEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCCC----CCCCCCEEEEEEECCCHH----------
Q ss_conf 852444456304567773988999999998597210--0246666777----766687389972038834----------
Q gi|254780439|r 924 LEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLD--ASIAAYGKRP----DLSQIKHFAVKESVFPFN---------- 987 (1162)
Q Consensus 924 IEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~--~~~~~~~~~~----~~~~~~~~aVK~pvFsF~---------- 987 (1162)
||||||.+..+-.+.-+||+++++.+..++.|..|. +++++....- ++..+ .+--..|.-.|.
T Consensus 293 IEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQc-RITTEDP~n~F~PDtGrI~aYR 371 (1149)
T COG1038 293 IEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQC-RITTEDPENGFIPDTGRITAYR 371 (1149)
T ss_pred EEECCCEEEEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE-EEECCCCCCCCCCCCCEEEEEE
T ss_conf 995473456776455441216788789885356568744599744440336437887-7413374547788875278886
Q ss_pred -------HCCCCCCCCCCCC----CCCE-EEEEEECCHHHHHHHHHHHC
Q ss_conf -------4599986707756----3101-37774199999999999983
Q gi|254780439|r 988 -------KFPGVDILLGPEM----RSTG-EVIGIDQDFPLAFAKSQLGI 1024 (1162)
Q Consensus 988 -------k~~g~D~~LGpEM----kSTG-EVmgig~~~~eA~~Ka~~a~ 1024 (1162)
||-|.+...|.+. -|-= -+-|.|.+|++|..|+..+-
T Consensus 372 s~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL 420 (1149)
T COG1038 372 SAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRAL 420 (1149)
T ss_pred CCCCCEEEECCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 2787438745776656646314455414456324899899999999988
No 47
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=5.7e-37 Score=310.53 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86789998887098668542--1121566555655369716751344445654125548999999999752101322111
Q gi|254780439|r 737 DRDRFQKLLMELDLNQPRNG--ISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814 (1162)
Q Consensus 737 DR~~F~~ll~~l~i~~p~~~--~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~ 814 (1162)
||.+|+++|+++|+|+|+|. .+.|.+|+.++|+++||||+|||++..||+||.+|+|.+||+++++.+...+.
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~----- 75 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAP----- 75 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHH-----
T ss_conf 989999999986989199878887999999999998599789973777899875124127789999999987514-----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC-EEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 122333333334557777456702201201001010230798-4999852011021524576279816866899999999
Q gi|254780439|r 815 RQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQ-VIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDEL 893 (1162)
Q Consensus 815 ~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~-v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i 893 (1162)
..+.+.+|++++|+++++|++|++++|+.. +...+..++.+ .+|+||+++..|+++|++++.+++
T Consensus 76 ------------~~~~~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~Pa~~l~~~~~e~i 141 (211)
T pfam02786 76 ------------AAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSD--QRRTQKSIEVAPSQTLTDEERQML 141 (211)
T ss_pred ------------HCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEE--ECCCCCEEEEECCCCCCHHHHHHH
T ss_conf ------------316998389974047765899999982799899999633225--033584446817999999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE--CCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99999998741335762478851--288599985244445630456777398899999999859721002
Q gi|254780439|r 894 ISQTKALAGALNVIGLINVQYAI--KDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDAS 961 (1162)
Q Consensus 894 ~~~t~~ia~~L~v~G~~NIQfa~--kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~ 961 (1162)
++++.+++++||+.|.+|+||.+ +++++||||+|||.|+++|+++++||+||++.++|+++|++|+++
T Consensus 142 ~~~a~~~~~~lg~~G~~~vef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e~ 211 (211)
T pfam02786 142 REAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPEL 211 (211)
T ss_pred HHHHHHHHHHCCEECCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999998752644233247899967999599996708968347788998794899999999779997869
No 48
>KOG0238 consensus
Probab=100.00 E-value=1.5e-36 Score=307.26 Aligned_cols=327 Identities=19% Similarity=0.294 Sum_probs=286.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE-E-------CCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf 99999999965980699606865211232458637984-1-------678899999987485678227998445124668
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE-S-------LTEEDILEILRVEQQKGELVGIIVQFGGQTPLK 712 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE-p-------lt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~ 712 (1162)
.|+.++++|++|++|+-|-+.|..-|.--..+|.-|-- | |..+.|++.+.+-....+++|+ |+...|
T Consensus 10 AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGY-----GFLSEn 84 (670)
T KOG0238 10 ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGY-----GFLSEN 84 (670)
T ss_pred EEHHHHHHHHHCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCCC-----CCCCCC
T ss_conf 511566799729758999715763432000045103428873444341378999999862884621785-----532355
Q ss_pred --HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf --9888887598386127520331028678999888709866854--211215665556553697167513444456541
Q gi|254780439|r 713 --LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHARLIACEIGFPLLIRPSYVLGGRAM 788 (1162)
Q Consensus 713 --la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M 788 (1162)
.+..|+.+|+.++|+++++|--+.|+..-.++|...|+|..++ +...|.+++.+.|++|||||||++++..||+||
T Consensus 85 ~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGM 164 (670)
T KOG0238 85 AEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGM 164 (670)
T ss_pred HHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 38999998769868798879988731257789999864996136856432667999999986198579995157887631
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCH
Q ss_conf 25548999999999752101322111122333333334557777456702201201001010230798499985201102
Q gi|254780439|r 789 QIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEE 868 (1162)
Q Consensus 789 ~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~ 868 (1162)
+|+++++|+++.+..+- .++...|++.-+|++||+++++++||++++|+....++ .-|+-+.
T Consensus 165 ria~~~~ef~~~~~~ak-----------------~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~-l~ERdCS 226 (670)
T KOG0238 165 RIAWSEEEFEEGLESAK-----------------QEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVH-LGERDCS 226 (670)
T ss_pred EEECCHHHHHHHHHHHH-----------------HHHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEE-ECCCCCC
T ss_conf 75148688999999888-----------------88876318641107776368754899997347776888-5045442
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEEEEECCCCCCCHHHHHHHHCCCHHH
Q ss_conf 1524576279816866899999999999999987413357624788512-885999852444456304567773988999
Q gi|254780439|r 869 AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIYILEVNPRASRTVPFIAKAIGFPVAK 947 (1162)
Q Consensus 869 aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iYVIEvNpRaSRtvPfvSKatG~pl~~ 947 (1162)
.....+.-+...|+..|+.+++.+|.+++.++|+++|++|.++++|+++ .++||++|||+|.+..+|.+.-.||.+|++
T Consensus 227 vQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVe 306 (670)
T KOG0238 227 VQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVE 306 (670)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECEEEECCCCHHHCCCHHHHH
T ss_conf 42321156630899999989999999999999886387644449999837885799984022530364163212227899
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCC
Q ss_conf 99999859721002466667777666873899720388344599
Q gi|254780439|r 948 VAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPG 991 (1162)
Q Consensus 948 iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g 991 (1162)
+..|++.|++|+-..-...+.+++.+.+.|| ..|.--|..-+|
T Consensus 307 wqiRvA~ge~lp~~q~ei~l~GhafE~RiyA-Edp~~~f~P~~G 349 (670)
T KOG0238 307 WQIRVAAGEPLPLKQEEIPLNGHAFEARIYA-EDPYKGFLPSAG 349 (670)
T ss_pred HHHHHHCCCCCCCCCCEEEECCEEEEEEEEE-CCCCCCCCCCCC
T ss_conf 9999864999997702013645478999850-077546777874
No 49
>KOG0368 consensus
Probab=100.00 E-value=1.5e-34 Score=291.34 Aligned_cols=395 Identities=19% Similarity=0.313 Sum_probs=305.0
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC--CEEECCCC----------CCCCEEEC-C---
Q ss_conf 65569999767754205054666888999999998797899974876--50107845----------13100433-7---
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP--ATIMTDPD----------LADATYTE-P--- 68 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp--aTi~TD~~----------~aD~vY~e-P--- 68 (1162)
+-|+||||..-|= +++.+++..|+--|++. =|.+. ..+|+.|| |||. |.| |
T Consensus 52 rvI~kILIAnNGi-----------AAvK~irSiRkWayetF-~ner~I~FV~MaTpddl~anaeyIrmADq-yvevPgGt 118 (2196)
T KOG0368 52 RVIKRILIANNGI-----------AAVKCIRSIRKWAYETF-GNERAIQFVCMATPDDLRANAEYIRMADQ-YVEVPGGT 118 (2196)
T ss_pred CEEEEEEEECCCH-----------HHHHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHHHHHHHHH-EEECCCCC
T ss_conf 4367888705658-----------89999999999999973-87660899996687888766888631011-43378888
Q ss_pred -----CCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----HHHCCEEECCCHHHHHHHCCHHHHHHHHHHC
Q ss_conf -----9999999999862898899758870268888998875962----8828757149989998605889999999987
Q gi|254780439|r 69 -----ITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVL----DRYGVEMIGAKPETIDKAEDRSLFSKAMQNI 139 (1162)
Q Consensus 69 -----lt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil----~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~ 139 (1162)
-+.+.|.+|.++...||+-+|.| .-+|++-| .+.||-|||+|..++..-+|+-.-.=....+
T Consensus 119 NnNNyANVdlIvdiAe~~~VdAVWaGWG---------HASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa 189 (2196)
T KOG0368 119 NNNNYANVDLIVDIAERTDVDAVWAGWG---------HASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSA 189 (2196)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCC---------CCCCCCCHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHC
T ss_conf 8777301899998887435535761555---------4456842578897679289889467777632168778988754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 89888620002344333332333333344444444333322211111123344444445544489999999998719969
Q gi|254780439|r 140 PLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPL 219 (1162)
Q Consensus 140 gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPv 219 (1162)
|+|+.+ |..+..+..+ +.++.. .-.++...+...-|.|.+|++++|+.|||||
T Consensus 190 ~vPtlp-WSGS~v~~~~-----------------~~~~~~---------~v~Vpedly~Kacv~~~eegLeaae~IGfPv 242 (2196)
T KOG0368 190 GVPTLP-WSGSGVKVEH-----------------IEDKTN---------LVSVPEDLYEKACVRNVEEGLEAAEKIGFPV 242 (2196)
T ss_pred CCCCCC-CCCCCCEEEE-----------------EECCCC---------EEECCHHHHHHHHCCCHHHHHHHHHHCCCCE
T ss_conf 997214-4688631445-----------------505676---------2735789865343088889999998629836
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 99413267866451116999999999989985799827986644997899999997289988999630000001000010
Q gi|254780439|r 220 IIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGD 299 (1162)
Q Consensus 220 ivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGD 299 (1162)
|||+|-++||.|.|-|+|+++|...+.+.....|.++++|=|...+++|+|+|++.|++||.|.+..++|+.|+++|+-.
T Consensus 243 MIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKII 322 (2196)
T KOG0368 243 MIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKII 322 (2196)
T ss_pred EEEECCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCEEEEEHHHHHHCCEEEEECCCCHHHHHHHHHH
T ss_conf 99954578976613045667899999999855899955520033675402100224530878777436623778777887
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 13433732289889999999999999871834576468999955898499985044431035788876346147677764
Q gi|254780439|r 300 SITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379 (1162)
Q Consensus 300 Si~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl 379 (1162)
+.+ |+---+.+.+|+|..+|+++++-+|| +++++|+|.+.|++++|||+|.|||+----|-.....|..+.-.--+|
T Consensus 323 EEA--PatIap~etf~~Me~~AvrLak~VGY-vSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQI 399 (2196)
T KOG0368 323 EEA--PATIAPPETFKKMEQAAVRLAKLVGY-VSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQI 399 (2196)
T ss_pred HHC--CCCCCCHHHHHHHHHHHHHHHHHHCC-EECCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHH
T ss_conf 618--85417889999999999999876361-113368999725898179996276302467752555157860899999
Q ss_pred HCCCCCCCCCC-------CCCCCCCCCCCC------CCCCEEEEEEE----------------------------ECCCC
Q ss_conf 13446101357-------756777766657------76776898544----------------------------20121
Q gi|254780439|r 380 AVGYTLDELGN-------DITGGKTPASFE------PSIDYIVTKIP----------------------------RFTFE 418 (1162)
Q Consensus 380 ~~G~~L~ei~~-------~~~~~~~~a~~E------p~ldyv~vK~p----------------------------~f~f~ 418 (1162)
|+|..|..|+. +.+|... -.|| |-.--+++++- +|+-.
T Consensus 400 AMGiPL~~I~dIR~lYg~~~~GdS~-idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~ 478 (2196)
T KOG0368 400 AMGIPLHRIPDIRRLYGLEPTGDSP-IDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVG 478 (2196)
T ss_pred HHCCCCCCCHHHHHHCCCCCCCCCC-CCHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEC
T ss_conf 8598510054889970899999998-771111378998418999863158887758898706884147777714899943
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1477666667731001002222676899999899750
Q gi|254780439|r 419 KFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGL 455 (1162)
Q Consensus 419 kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsl 455 (1162)
.-.+.+..-.+| -|-+.++|++-+||...-+-.|
T Consensus 479 ~~g~iHeFadSQ---FGHiFa~Ge~R~eAi~nMv~aL 512 (2196)
T KOG0368 479 NGGGIHEFADSQ---FGHIFAFGESRQEAIANMVVAL 512 (2196)
T ss_pred CCCCCEECCCCC---CCEEEEECCCHHHHHHHHHHHH
T ss_conf 798502424333---4014662576899999999988
No 50
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=4.2e-31 Score=264.04 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=135.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECC-CCHHHHHHHHHH
Q ss_conf 7766556999976775420505466688899999999879789997487650107845131004337-999999999986
Q gi|254780439|r 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEP-ITPEVVAKIIEK 80 (1162)
Q Consensus 2 P~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~eP-lt~e~v~~Ii~~ 80 (1162)
|..+.-|||+|+|+|-+ |--.+.|.+++|++|+.++++|..-. ...||+.+..+ ...+.+.+.+++
T Consensus 7 p~~~~~kkIgIlGgGQL-----------g~Mla~aA~~LG~~vivld~~~d~PA--~~vAd~~~~~~~~D~~al~~~a~~ 73 (395)
T PRK09288 7 PLSPSATRVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSHVIDMLDGDALRAVIER 73 (395)
T ss_pred CCCCCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCCCH--HHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 98999888999898899-----------99999999987998999848995944--672865797787899999999998
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999-98789888620002344333332
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAM-QNIPLATPKSILANATDIKEHDR 159 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l-~~~gip~~~s~~~~~~~~~~~~~ 159 (1162)
+++|+|..-+-. .+......| ++.|+++. ++++++..+.||...++++ +++|+|+++.+.+
T Consensus 74 ~~~DvvT~E~E~-V~~~~L~~l------e~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v---------- 135 (395)
T PRK09288 74 EKPDLIVPEIEA-IATDALVEL------EAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFA---------- 135 (395)
T ss_pred HCCCEEEECCCC-CCHHHHHHH------HHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----------
T ss_conf 389989978544-788999999------86893367-999999998767899999997469999995470----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 33333334444444433332221111112334444444554448999999999871996999413267866451116999
Q gi|254780439|r 160 KLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRS 239 (1162)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~e 239 (1162)
.|.+++.++++++|||+|+||+++.+|+|+.++++.+
T Consensus 136 -------------------------------------------~s~~el~~~~~~lG~P~vlK~~~G~DGKGq~~v~~~~ 172 (395)
T PRK09288 136 -------------------------------------------DSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPE 172 (395)
T ss_pred -------------------------------------------CCHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCHH
T ss_conf -------------------------------------------8999999999982987587224157887528966878
Q ss_pred HHHHHHHHHHHHCC--CCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEE-ECCCCCCCHHHHHH
Q ss_conf 99999998998579--9827986644997899999997289988999630000001000010134-33732289889999
Q gi|254780439|r 240 EFLEIVENGLHASP--TTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSIT-VAPALTLTDKEYQL 316 (1162)
Q Consensus 240 eL~~~~~~al~~s~--~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~-vaP~qTL~d~~~q~ 316 (1162)
||.++.+.++..++ .+++++|+++.--+|+.+-+.||.+|.+.+.--+||...- ||..+ ++|+. ++++..++
T Consensus 173 dl~~a~~~a~~~~~~~~~~~ivE~~v~f~~E~Svi~aR~~~g~~~~~~pve~~~~~----gil~~s~~Pa~-i~~~v~~~ 247 (395)
T PRK09288 173 DIEAAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGHRQED----GDYRESWQPQP-MSPAALEE 247 (395)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCCEEEC----CEEEEEECCCC-CCHHHHHH
T ss_conf 88999999985075789708998885361799999999699988996685425533----42799715778-99999999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHH
Q ss_conf 99999999987183457646899995589849998504443103
Q gi|254780439|r 317 MRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 (1162)
Q Consensus 317 LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRs 360 (1162)
.++.|.+|+++|++ +|.++|||.+. ++++||.|++||.--|
T Consensus 248 a~~ia~~i~~~L~~-vGvl~VEfFv~--~d~llvNEiAPR~HNS 288 (395)
T PRK09288 248 AQEIAKKVTDALGG-RGLFGVELFVK--GDEVYFSEVSPRPHDT 288 (395)
T ss_pred HHHHHHHHHHHCCC-CCEEEEEEEEE--CCEEEEEEECCCCCCC
T ss_conf 99999999997487-14488999997--8908999920787786
No 51
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=5.1e-31 Score=263.42 Aligned_cols=363 Identities=21% Similarity=0.282 Sum_probs=284.1
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE-CCHHHHHHHHHHHCC
Q ss_conf 7774189972763020147665318999999999659806996068652112324586379841-678899999987485
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES-LTEEDILEILRVEQQ 694 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp-lt~E~V~~I~~~E~p 694 (1162)
.+.|||+|||+|-. .-..+.+.+++||+++.+..+|.. .-...+|+.|.-+ ...+.+.+.++.+++
T Consensus 10 ~~~kkIgIlGgGQL-----------g~Mla~aA~~LG~~vivld~~~d~--PA~~vAd~~~~~~~~D~~al~~~a~~~~~ 76 (395)
T PRK09288 10 PSATRVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANA--PAMQVAHRSHVIDMLDGDALRAVIEREKP 76 (395)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCC--CHHHHCCEEEECCCCCHHHHHHHHHHHCC
T ss_conf 99888999898899-----------999999999879989998489959--44672865797787899999999998389
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 678227998445124668988888759838612752033102867899988-8709866854211215665556553697
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLL-MELDLNQPRNGISHSVEHARLIACEIGF 773 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll-~~l~i~~p~~~~a~s~eea~~~a~~iGy 773 (1162)
+. ++----..+......|++.|+++. ++++++..+.||.+..+++ +++|||.|+|..+.|.+|+..+++++||
T Consensus 77 Dv-----vT~E~E~V~~~~L~~le~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~lG~ 150 (395)
T PRK09288 77 DL-----IVPEIEAIATDALVELEAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGY 150 (395)
T ss_pred CE-----EEECCCCCCHHHHHHHHHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCC
T ss_conf 98-----997854478899999986893367-999999998767899999997469999995470899999999998298
Q ss_pred CEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 16751344445654125548999999999752101322111122333333334557777456702201201001010230
Q gi|254780439|r 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853 (1162)
Q Consensus 774 PVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D 853 (1162)
|++++|++..+|+|+.++.+.+||+..++.+.... .....++++|+|+.-.+|+.|.+.|+
T Consensus 151 P~vlK~~~G~DGKGq~~v~~~~dl~~a~~~a~~~~-------------------~~~~~~~ivE~~v~f~~E~Svi~aR~ 211 (395)
T PRK09288 151 PCVVKPVMSSSGKGQSVVRSPEDIEAAWEYAQEGG-------------------RGGAGRVIVEEFIDFDYEITLLTVRA 211 (395)
T ss_pred CEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHC-------------------CCCCCCEEEEEEECCCEEEEEEEEEC
T ss_conf 75872241578875289668788899999998507-------------------57897089988853617999999996
Q ss_pred C-CCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCC
Q ss_conf 7-984999852011021524576279816866899999999999999987413357624788512885999852444456
Q gi|254780439|r 854 N-DQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASR 932 (1162)
Q Consensus 854 g-~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSR 932 (1162)
. +.+..+..+||+.. +|+..++++|.+++++..++.++++++++++|+++|.++|||.+.++++||.|+|||..-
T Consensus 212 ~~g~~~~~~pve~~~~----~gil~~s~~Pa~i~~~v~~~a~~ia~~i~~~L~~vGvl~VEfFv~~d~llvNEiAPR~HN 287 (395)
T PRK09288 212 VDGGTHFCAPIGHRQE----DGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSEVSPRPHD 287 (395)
T ss_pred CCCCEEEECCCCCEEE----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCCCCC
T ss_conf 9998899668542553----342799715778999999999999999999748714488999997890899992078778
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE---EEEECCC----HHHCCCCCCCC-C-CCCCCC
Q ss_conf 3045677739889999999985972100246666777766687389---9720388----34459998670-7-756310
Q gi|254780439|r 933 TVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFA---VKESVFP----FNKFPGVDILL-G-PEMRST 1003 (1162)
Q Consensus 933 tvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~a---VK~pvFs----F~k~~g~D~~L-G-pEMkST 1003 (1162)
|--++=-+....--+.-.|+.+|-+|.+.... .|.+ .+...+ -..|.+. ..+.||++..+ | +|.| .
T Consensus 288 SGH~Ti~~~~~sQFe~hlRai~glPlg~~~~~---~p~a-~~~~lg~~~~~~~~~~~~~~~~~~p~~~~h~YGK~~~r-~ 362 (395)
T PRK09288 288 TGMVTLISQNLSEFELHARAILGLPIPDIRLY---GPAA-SAVILAEGESANPSFDGLAEALAVPGTDVRLFGKPEIR-G 362 (395)
T ss_pred CCEEEEHHCCCCHHHHHHHHHCCCCCCCCCCC---CCCE-EEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC-C
T ss_conf 62176210354199999999809988985203---6737-99995266677866346999971999879992899998-9
Q ss_pred EEEEEE----ECCHHHHHHHHHHHCC
Q ss_conf 137774----1999999999999838
Q gi|254780439|r 1004 GEVIGI----DQDFPLAFAKSQLGIG 1025 (1162)
Q Consensus 1004 GEVmgi----g~~~~eA~~Ka~~a~g 1025 (1162)
|-.||. |.|+.+|..||..+..
T Consensus 363 gRKmGHvt~~g~~~~~a~~~a~~a~~ 388 (395)
T PRK09288 363 GRRMGVALATAEDVEEAREKAKKAAA 388 (395)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 98338999860999999999999974
No 52
>KOG0369 consensus
Probab=100.00 E-value=1.4e-32 Score=275.76 Aligned_cols=377 Identities=21% Similarity=0.333 Sum_probs=314.3
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE-----E----CCHHHHHHH
Q ss_conf 7418997276302014766531899999999965980699606865211232458637984-----1----678899999
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE-----S----LTEEDILEI 688 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE-----p----lt~E~V~~I 688 (1162)
++||||---|-+-| +.-+++.|++..||-|-+--.+.|.----+|--|.- | |+...+..|
T Consensus 33 ~~kvlVANRgEIaI-----------RvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~i 101 (1176)
T KOG0369 33 KNKVLVANRGEIAI-----------RVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISI 101 (1176)
T ss_pred HCEEEEECCCCCHH-----------HHHHHHHHHCCEEEEEEECCCHHHHHHHCCCHHEECCCCCCCHHHHHCHHHHHHH
T ss_conf 03478852762004-----------7887777625447999731111246563043012326777826765147999999
Q ss_pred HHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCHHHH
Q ss_conf 987485678227998445124668--9888887598386127520331028678999888709866854--211215665
Q gi|254780439|r 689 LRVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSVEHA 764 (1162)
Q Consensus 689 ~~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~eea 764 (1162)
..+.+-+.+.+|+ |....+ .|..+.++|+.++|+||+.||...|+...+.+.-+.|+|..++ +.+++.+||
T Consensus 102 ak~~~vdavHPGY-----GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA 176 (1176)
T KOG0369 102 AKKHNVDAVHPGY-----GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEA 176 (1176)
T ss_pred HHHCCCCEECCCC-----CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 9872887325774-----21221248999998659669688979998842088888999971997158999975429999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 55655369716751344445654125548999999999752101322111122333333334557777456702201201
Q gi|254780439|r 765 RLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAM 844 (1162)
Q Consensus 765 ~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~ 844 (1162)
.+|+++.||||+++..|..|||||++|.+-+++++.+.+|-+ ++...+++..+.|+||++..+
T Consensus 177 ~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~S-----------------EA~aaFGnG~~FvEkF~ekPr 239 (1176)
T KOG0369 177 LEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYS-----------------EALAAFGNGTLFVEKFLEKPR 239 (1176)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH-----------------HHHHHCCCCEEEHHHHHCCCC
T ss_conf 999986198389961016897643775025569999998889-----------------999861786153786625865
Q ss_pred EEEEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEE
Q ss_conf 00101023079-84999852011021524576279816866899999999999999987413357624788512-88599
Q gi|254780439|r 845 EIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIY 922 (1162)
Q Consensus 845 EiEVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iY 922 (1162)
+|||+.+.|.. |+++ .-|+-+......+....+.|+.+|.++.+++|.+-+.++|+..++....+++|+++ .+..|
T Consensus 240 HIEvQllgD~~GNvvH--LyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hY 317 (1176)
T KOG0369 240 HIEVQLLGDKHGNVVH--LYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHY 317 (1176)
T ss_pred EEEEEEECCCCCCEEE--EEECCCCHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEE
T ss_conf 2689872135687898--76145516432010367345565998999999999999999847565770788771679789
Q ss_pred EEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCC-CCCC
Q ss_conf 985244445630456777398899999999859721002466667777666873899720388344599986707-7563
Q gi|254780439|r 923 ILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLG-PEMR 1001 (1162)
Q Consensus 923 VIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LG-pEMk 1001 (1162)
+||+|||.+..+-.+.-.||++|+....+++.|.+|+++++..+... .+.+++..-|--=..-.|..|-.| -|.-
T Consensus 318 FIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~----trG~aIQCRvTTEDPa~~FqPdtGriEVf 393 (1176)
T KOG0369 318 FIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKIT----TRGFAIQCRVTTEDPAKGFQPDTGRIEVF 393 (1176)
T ss_pred EEEECCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEE----ECCEEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 99954643566552310045201011113431787532354302032----04337998872358554689987507999
Q ss_pred CCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 1013777419999999999998388798872599996
Q gi|254780439|r 1002 STGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSV 1038 (1162)
Q Consensus 1002 STGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv 1038 (1162)
-.||-||+--+-..||.-|.++ |.+-.+++-+
T Consensus 394 RSgeGmGiRLD~asafaGavIs-----PhYDSllVK~ 425 (1176)
T KOG0369 394 RSGEGMGIRLDGASAFAGAVIS-----PHYDSLLVKV 425 (1176)
T ss_pred ECCCCCEEEECCCCCCCCCCCC-----CCCCCEEEEE
T ss_conf 7078744762475435664116-----5555327889
No 53
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=99.96 E-value=9.3e-29 Score=245.50 Aligned_cols=110 Identities=51% Similarity=0.804 Sum_probs=108.0
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 25999964412899999999999889899993888999998798156975056878107889867985499967899852
Q gi|254780439|r 1032 GTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKA 1111 (1162)
Q Consensus 1032 g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~ 1111 (1162)
|+||+|++|+||++++++|++|.+|||+||||+|||+||+++||+|+.|+|++|++||++|+|++++|+||||||++.+.
T Consensus 1 G~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~~~~~~ 80 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA 80 (110)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCC
T ss_conf 96999986654768999999999889999987169999986498640330056799768999977935899977889865
Q ss_pred CCCHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 311089999999709979945999999999
Q gi|254780439|r 1112 IEDSKSLRRATLIRKIPYYTTIAGADAVFQ 1141 (1162)
Q Consensus 1112 ~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~ 1141 (1162)
.+|||.|||+|++++|||+|++++|+|+++
T Consensus 81 ~~dg~~IRr~Av~~~Ip~~Tsi~~A~a~ve 110 (110)
T cd01424 81 IRDGFSIRRAALEYKVPYFTTLDTARAAVE 110 (110)
T ss_pred CCCHHHHHHHHHHCCCCEEECHHHHHHHHC
T ss_conf 742999999999769999966999998739
No 54
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.95 E-value=6e-26 Score=223.27 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCE
Q ss_conf 8999999999871996999413267-866451116999999999989985799827986644997899999997289988
Q gi|254780439|r 203 HAMAVAVQALDEIGLPLIIRPSFTL-GGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNC 281 (1162)
Q Consensus 203 ~s~~ea~~~a~~iGyPvivRps~~l-GG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~ 281 (1162)
+|.+++.++++++|||++|||+..+ ||+|+.++++++||..+++. ...+++++|++|..++|+.+.++||.+|++
T Consensus 15 ~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~----~~~~~~liE~~I~~~~Ei~~~~~r~~~g~~ 90 (171)
T pfam02222 15 ESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEE----LGGGPVIVEEFVPFDKELSVLVVRSVDGET 90 (171)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH----CCCCCEEEEEECCCCEEEEEEEEECCCCCE
T ss_conf 9999999999970997899961102589852898899999999985----589957998604675799987434499989
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHH
Q ss_conf 99963000000100001013433732289889999999999999871834576468999955898499985044431035
Q gi|254780439|r 282 IVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361 (1162)
Q Consensus 282 i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRss 361 (1162)
++.+.+|++...|++. .+++|++ ++++..+++++.|.|++++||+ +|.++|||.++ .+|++||+|||||++||-
T Consensus 91 ~~~~~~e~~~~~g~~~---~~~~Pa~-~~~~~~~~i~~~a~ki~~aLg~-~G~~~veff~~-~dG~~~v~EvnpR~h~sg 164 (171)
T pfam02222 91 AFYPPVETIQEDGICH---ESVAPAR-VPDSQQAKAQEIAKKIVDELGG-VGIFGVELFVL-PDGDLLVNELAPRPHNSG 164 (171)
T ss_pred EECCCEEEEEECCEEE---EEECCCC-CCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEC-CCCCEEEEEECCCCCCCC
T ss_conf 9803546688678189---8742888-8989999999999999998397-04599999993-999799999649967757
Q ss_pred H
Q ss_conf 7
Q gi|254780439|r 362 A 362 (1162)
Q Consensus 362 a 362 (1162)
-
T Consensus 165 ~ 165 (171)
T pfam02222 165 H 165 (171)
T ss_pred C
T ss_conf 6
No 55
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=99.94 E-value=1.8e-26 Score=227.34 Aligned_cols=109 Identities=27% Similarity=0.467 Sum_probs=102.7
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCC----CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 59999644128999999999998898999938889999987981569750568----78107889867985499967899
Q gi|254780439|r 1033 TVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLE----GRPHIEDAISNRQVHLVINTTEG 1108 (1162)
Q Consensus 1033 ~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e----~~~~i~d~i~~~~i~lVINt~~~ 1108 (1162)
+||+|++|.||++++++|+.|.+|||+||||+|||+||+++||+|+.|.|++| ++||++|+|++|+||||||||.+
T Consensus 2 nVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVINtp~~ 81 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSN 81 (116)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCC
T ss_conf 29999402038999999999998799999841899999986996579878624678999669999976986899988899
Q ss_pred CC--CCCCHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 85--2311089999999709979945999999999
Q gi|254780439|r 1109 KK--AIEDSKSLRRATLIRKIPYYTTIAGADAVFQ 1141 (1162)
Q Consensus 1109 ~~--~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~ 1141 (1162)
.+ ..+|||.|||+|++++|||+|++++|++|++
T Consensus 82 ~~~~~~~~g~~iRr~Av~~~Ip~~T~~~~A~~~ve 116 (116)
T cd01423 82 RGKRVLDNDYVMRRAADDFAVPLITNPKCAKLFIE 116 (116)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHHC
T ss_conf 98643354589999999759998977999998719
No 56
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.94 E-value=2.6e-26 Score=226.14 Aligned_cols=106 Identities=34% Similarity=0.489 Sum_probs=100.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCC-CCCCHHHHHHC-CCEEEEEECCCCCC-
Q ss_conf 9999644128999999999998898999938889999987981569750568-78107889867-98549996789985-
Q gi|254780439|r 1034 VFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLE-GRPHIEDAISN-RQVHLVINTTEGKK- 1110 (1162)
Q Consensus 1034 vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e-~~~~i~d~i~~-~~i~lVINt~~~~~- 1110 (1162)
||+|++|+||++++++|++|.+|||+||||+|||+||+++||+|+.|+|++| ++|++.|+|++ |+|+||||||++.+
T Consensus 2 VfiSv~D~DK~~~i~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~V~Ki~e~g~p~v~d~i~~~g~I~lVINt~~~~~~ 81 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRD 81 (112)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 89998657566899999999988999998868999999879834898504878998899998668967999988888877
Q ss_pred --CCCCHHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf --23110899999997099799459999999
Q gi|254780439|r 1111 --AIEDSKSLRRATLIRKIPYYTTIAGADAV 1139 (1162)
Q Consensus 1111 --~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~ 1139 (1162)
..+|||.|||+|++++|||+||+++|.|.
T Consensus 82 ~~~~~Dg~~IRr~Av~~~IP~~Ttl~~A~av 112 (112)
T cd00532 82 RCTDEDGTALLRLARLYKIPVTTPNATAMFV 112 (112)
T ss_pred CCCCCCHHHHHHHHHHCCCCEECCHHHHHHC
T ss_conf 3324548999999997699988448986029
No 57
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.94 E-value=3.7e-23 Score=201.15 Aligned_cols=284 Identities=21% Similarity=0.302 Sum_probs=222.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCC
Q ss_conf 5699997677542050546668---8899999999879789997487650107845131004337999999999986289
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDY---SGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~p 83 (1162)
-+||.|+-.|+- .|.+- ||.++.+||++.||+++.|+.+. .....++..++
T Consensus 4 ~~kI~vl~GG~S-----~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~---------------------~~~~~l~~~~~ 57 (304)
T PRK01372 4 FGKVAVLMGGTS-----AEREVSLNSGAAVLAALREAGYDAHPIDPGE---------------------DPAAELKELGF 57 (304)
T ss_pred CCCEEEEECCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCC
T ss_conf 771899936787-----1289999999999998837599799982896---------------------46778753399
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898886200023443333323333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHE 163 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~ 163 (1162)
|.+.|.+-|..+=+=+. .|.|+.+||...|.++.+-..+-|+..+++.+.+.|+|+|++.+++
T Consensus 58 D~vf~~lHG~~GEDG~i----QglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~------------- 120 (304)
T PRK01372 58 DRVFNALHGRGGEDGTI----QGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLT------------- 120 (304)
T ss_pred CEEEEECCCCCCCCHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-------------
T ss_conf 99999068999856499----9999985998357998998776538999999998699989849986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 33344444444333322211111123344444445544489999999998719969994132678664511169999999
Q gi|254780439|r 164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLE 243 (1162)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~ 243 (1162)
..+...+..+++|||++|||+..+...|..+|+|.+||..
T Consensus 121 ----------------------------------------~~~~~~~~~~~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ 160 (304)
T PRK01372 121 ----------------------------------------RAEDLLAAIDKLGLPLVVKPAREGSSVGVTKVKEADELPA 160 (304)
T ss_pred ----------------------------------------CCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHH
T ss_conf ----------------------------------------5313999987618987997668886665389669889999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEE-EECCCCC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99989985799827986644997899999997289988999-6300000-010000101343373228988999999999
Q gi|254780439|r 244 IVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV-CSIENLD-PMGVHTGDSITVAPALTLTDKEYQLMRNAA 321 (1162)
Q Consensus 244 ~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v-~~~En~d-p~GiHtGDSi~vaP~qTL~d~~~q~LR~~a 321 (1162)
+++.++... ++++||+||.| +|+.+-|+.|..--++-+ ..-+-.| ..-.++|.+.-+.|+. |+++..+++++.|
T Consensus 161 ai~~a~~~~--~~vLvE~~I~G-rEitv~Vlg~~~lp~~eI~~~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a 236 (304)
T PRK01372 161 ALELAFKYD--DEVLVEKYIKG-RELTVAVLGGKALPVIRIVPPGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALA 236 (304)
T ss_pred HHHHHHHCC--CCCEEEEEECC-EEEEEEEECCCCCCEEEEECCCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHH
T ss_conf 999987448--86254502565-6999999899777538994599875776612557741100689-9999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--HHHHHCCCHHHHHHHH
Q ss_conf 9999871834576468999955898499985044--43103578--8876346147677764
Q gi|254780439|r 322 IAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL--ASKATGFPIAKIAAKL 379 (1162)
Q Consensus 322 ~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal--askatgypia~vaakl 379 (1162)
.++.++||.+ |.+.|.|.++ .+++.||+|+|| -++.+|-| +.++.|+....+..+|
T Consensus 237 ~~~~~aLg~~-g~aRvDf~~~-~~g~~~~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~i 296 (304)
T PRK01372 237 LRAYKALGCR-GWGRVDFMLD-EDGKPYLLEVNTSPGMTSHSLVPMAARAAGISFSELVVWI 296 (304)
T ss_pred HHHHHHHCCC-CEEEEEEEEE-CCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999984997-3698899990-7997899983399998741589999998199999999999
No 58
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.93 E-value=5.2e-24 Score=207.89 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=142.2
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC-CCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 887098668542112156655565536971675134444-5654125548999999999752101322111122333333
Q gi|254780439|r 745 LMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVL-GGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTG 823 (1162)
Q Consensus 745 l~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVL-GG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~ 823 (1162)
|+++|||+|+|..++|.+|+.++++++|||++|||+... ||++|.+|++++||...+..+
T Consensus 1 l~~~Giptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~~------------------- 61 (171)
T pfam02222 1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEEL------------------- 61 (171)
T ss_pred CHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHC-------------------
T ss_conf 9020989999549899999999999709978999611025898528988999999999855-------------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEEEEEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 33455777745670220120100101023079-84999852011021524576279816866899999999999999987
Q gi|254780439|r 824 QINTLLGTHPLLFDSYLSDAMEIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAG 902 (1162)
Q Consensus 824 ~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~ 902 (1162)
.+.++++++|+..++|+.+++++|.. ++.....+||+..- |+...+.+|..++++.++++++++.++++
T Consensus 62 ------~~~~~liE~~I~~~~Ei~~~~~r~~~g~~~~~~~~e~~~~~----g~~~~~~~Pa~~~~~~~~~i~~~a~ki~~ 131 (171)
T pfam02222 62 ------GGGPVIVEEFVPFDKELSVLVVRSVDGETAFYPPVETIQED----GICHESVAPARVPDSQQAKAQEIAKKIVD 131 (171)
T ss_pred ------CCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCEEEEEEC----CEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------89957998604675799987434499989980354668867----81898742888898999999999999999
Q ss_pred HCCCCCCCEEEEEE-CCCEEEEEEECCCCCCCHH
Q ss_conf 41335762478851-2885999852444456304
Q gi|254780439|r 903 ALNVIGLINVQYAI-KDGKIYILEVNPRASRTVP 935 (1162)
Q Consensus 903 ~L~v~G~~NIQfa~-kd~~iYVIEvNpRaSRtvP 935 (1162)
+|+++|++||||.+ +|+++||+|+|||-+||=-
T Consensus 132 aLg~~G~~~veff~~~dG~~~v~EvnpR~h~sg~ 165 (171)
T pfam02222 132 ELGGVGIFGVELFVLPDGDLLVNELAPRPHNSGH 165 (171)
T ss_pred HCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 8397045999999939997999996499677576
No 59
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.92 E-value=1.1e-20 Score=181.56 Aligned_cols=358 Identities=19% Similarity=0.242 Sum_probs=255.1
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCC-CHHHHHHHHHHHCCCE
Q ss_conf 569999767754205054666888999999998797899974876501078451310043379-9999999998628988
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPI-TPEVVAKIIEKERPDA 85 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePl-t~e~v~~Ii~~E~pDa 85 (1162)
-++|.|||+|-. |---+.|.+.+|++++...+++..- -...||+.+..+. ..+.+.+.+ +++|.
T Consensus 7 ~~tIGIlGgGQL-----------grMla~aA~~lG~~v~vldp~~~~P--A~~va~~~~~~~~~D~~al~~fa--~~~Dv 71 (377)
T PRK06019 7 GKTIGIIGGGQL-----------GRMLALAAAPLGYKVIVLDPDADCP--AAQVADRVIVADYDDVAALRELA--EQCDV 71 (377)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCCC--HHHHCCEEEECCCCCHHHHHHHH--HCCCE
T ss_conf 999999878689-----------9999999997899899984898498--47837848986889899999998--45999
Q ss_pred EEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99758870268888998875962882875714998999860588999999998789888620002344333332333333
Q gi|254780439|r 86 ILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEE 165 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~ 165 (1162)
|-.-+-.= ....-..|.+. ++ +=++++++..+.||.+-++++.++|+|+++.+.+
T Consensus 72 iT~E~EnI-~~~~L~~le~~-------~~-v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v---------------- 126 (377)
T PRK06019 72 ITYEFENV-PAEALDLLAAR-------VP-VPPGPDALAIAQDRLTEKQFLDELGIPVAPFALV---------------- 126 (377)
T ss_pred EEECCCCC-CHHHHHHHHHC-------CC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE----------------
T ss_conf 99781768-99999999708-------96-6879899998862799999999769998880671----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCHHHHHHH
Q ss_conf 34444444433332221111112334444444554448999999999871996999413267-86645111699999999
Q gi|254780439|r 166 RENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTL-GGTGGGIAYNRSEFLEI 244 (1162)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~l-GG~G~~iv~n~eeL~~~ 244 (1162)
.|.+++.++++++|||+|+|++-.+ -|+|-.++++.+|+..+
T Consensus 127 -------------------------------------~s~~dl~~~~~~lg~P~vlKt~~~GYDGKGq~~i~s~~dl~~a 169 (377)
T PRK06019 127 -------------------------------------DSAEDLDAAIADLGLPAVLKTRRGGYDGKGQWVLRSEADLDAA 169 (377)
T ss_pred -------------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCHHHHHHH
T ss_conf -------------------------------------8999999999972997699513346188701897788899999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99899857998279866449978999999972899889996300000010000101343373228988999999999999
Q gi|254780439|r 245 VENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAV 324 (1162)
Q Consensus 245 ~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI 324 (1162)
.. .....++++|+++.--+|+-+-+.||.+|++.+.-..||+-.-||= ..+++|+ .++++..++.++.|.+|
T Consensus 170 ~~----~l~~~~~i~E~~i~f~~ElSvivaR~~~G~~~~yP~~en~h~~gil---~~s~~Pa-~~~~~~~~~a~~ia~~i 241 (377)
T PRK06019 170 WA----ALGSGPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENVHRNGIL---RTSIAPA-PISADLQAQAEEIASRI 241 (377)
T ss_pred HH----HCCCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCHHCEEECCEE---EEEECCC-CCCHHHHHHHHHHHHHH
T ss_conf 98----6569988999654351899999998489999994441147777755---8998899-99999999999999999
Q ss_pred HHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC--CCCCCCCCC-CCC
Q ss_conf 98718345764689999558984999850444310357888763461476777641344610135--775677776-665
Q gi|254780439|r 325 LKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELG--NDITGGKTP-ASF 401 (1162)
Q Consensus 325 ~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~--~~~~~~~~~-a~~ 401 (1162)
+++|++ +|...|+|-+.. ++ .||=|+-||.--|--+---+.-..=-..-.+..+|..|.+.. .|..-.+.. ...
T Consensus 242 ~~~l~~-vGvl~VE~F~~~-~~-llvNEiAPRpHNSGH~Ti~~~~~SQFe~HlRAi~glpl~~~~~~~pa~M~NilG~~~ 318 (377)
T PRK06019 242 AEELDY-VGVLAVEFFVTG-DG-LLVNEIAPRVHNSGHWTIDACSTSQFEQHLRAIAGLPLGSTELLSPAVMVNLLGDDV 318 (377)
T ss_pred HHHCCC-CCEEEEEEEEEC-CC-EEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 997487-624999999918-93-899972588768754764234124899999998299888854447669999837753
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 7767768985442012114776666677310010022226768999998997503
Q gi|254780439|r 402 EPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLE 456 (1162)
Q Consensus 402 Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle 456 (1162)
++..+. ....|.|.+.-|.....+-|-.| |-+-..|.+.++|..||-+-.+
T Consensus 319 ~~~~~~-~~~~~~~~~h~YgK~e~r~gRKm---GHit~~~~~~~~~~~~~~~~~~ 369 (377)
T PRK06019 319 EPDWDD-LLALPGAHLHWYGKAEARPGRKM---GHVTVLGDDVEALLEKAEALAA 369 (377)
T ss_pred CHHHHH-HHHCCCCEEEECCCCCCCCCCCE---EEEEEECCCHHHHHHHHHHHHH
T ss_conf 136999-97199988997689878899826---8999831999999999999997
No 60
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.91 E-value=3.8e-20 Score=177.31 Aligned_cols=360 Identities=18% Similarity=0.240 Sum_probs=255.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECCCCHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 899999999879789997487650107845131004-337999999999986-289889975887026888899887596
Q gi|254780439|r 30 GTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEPITPEVVAKIIEK-ERPDAILPTTGGQTALNTALSLKRMGV 107 (1162)
Q Consensus 30 ~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~ePlt~e~v~~Ii~~-E~pDaIlp~~GGqtalnl~~~L~e~gi 107 (1162)
|..++++-++.|+++|++-.+|+-.--=.+..+++- +.-=+++.+.+.+.. ....||+.+-- .-+..+-+|.+.
T Consensus 16 G~l~lk~A~~lG~~pv~LT~dP~rY~~L~~~~~evI~vDT~d~dal~~~v~~~~~IaGV~s~sD--yyl~~AA~LA~~-- 91 (892)
T PRK02186 16 GELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSE--YFIEVASEVARR-- 91 (892)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHCHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCH--HHHHHHHHHHHH--
T ss_conf 7999999997498558983683435246751765999369999999999742368526987405--449999999998--
Q ss_pred HHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28828757149989998605889999999987898886200023443333323333333444444443333222111111
Q gi|254780439|r 108 LDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALEL 187 (1162)
Q Consensus 108 l~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1162)
+ -+=|+++++|..+-|+.+.++.+.+.|+|+|...+++
T Consensus 92 ---L--GLPGp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~------------------------------------- 129 (892)
T PRK02186 92 ---L--GLPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHALA------------------------------------- 129 (892)
T ss_pred ---H--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-------------------------------------
T ss_conf ---1--9899899999998719999999996699999568835-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf 23344444445544489999999998719969994132678664511169999999999899857998279866449978
Q gi|254780439|r 188 KWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWK 267 (1162)
Q Consensus 188 ~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~k 267 (1162)
+.+++..++.+|||||+|||+-.-|-.|-++|+|++||.+..+..+.. ...++|||+|+.| .
T Consensus 130 ----------------~~~e~~~aAa~IGfPvVVKP~dgSGS~GVrLc~s~aEL~e~~~~l~~~-r~~~vLVEEFieG-p 191 (892)
T PRK02186 130 ----------------LDAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-D 191 (892)
T ss_pred ----------------CHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCC-C
T ss_conf ----------------887899999847999897168888776858768999999999999715-4886699971568-8
Q ss_pred EEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCE
Q ss_conf 99999997289988999630000001000010134337322898899999999999998718345764689999558984
Q gi|254780439|r 268 EYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGK 347 (1162)
Q Consensus 268 EiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~ 347 (1162)
|+-+|.|.+..+ ..+++..+-.---+=|-.+.--+.|+ .|++.+++++-+.+.+..+++|+.-|.+|++|-+. ...
T Consensus 192 EYSVEt~s~~G~-~~VIGIT~K~l~~~P~FVE~GH~fPA-pL~~~~~~~I~d~v~raL~AlGl~~GpAHTEvklT--~~G 267 (892)
T PRK02186 192 EYSVETLTVARG-HQVLGITRKHLGPPPHFVEIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDT 267 (892)
T ss_pred EEEEEEEEECCC-EEEEEEEEEECCCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCC
T ss_conf 789999997796-79999986533899717870676789-99858999999999999997086668832899993--897
Q ss_pred EEEEEECCCCCHH--HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC------------CCCCCCCCCCCCEEEEEEE
Q ss_conf 9998504443103--5788876346147677764134461013577567------------7776665776776898544
Q gi|254780439|r 348 MVVIEMNPRVSRS--SALASKATGFPIAKIAAKLAVGYTLDELGNDITG------------GKTPASFEPSIDYIVTKIP 413 (1162)
Q Consensus 348 ~yvIEvNpR~sRs--salaskatgypia~vaakl~~G~~L~ei~~~~~~------------~~~~a~~Ep~ldyv~vK~p 413 (1162)
-+|||+|||+-=- --|+..|||..+....-.+-+|..-.-.+.+.-+ .-..-.|+|.--.--...+
T Consensus 268 PvVIEINPRLAGGmIP~Lve~A~GvDll~~~~~~~~g~~~~~~~~~~~~~ai~f~~p~~~~~~~~~~~~~~~~~~~~~~~ 347 (892)
T PRK02186 268 VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRGPLALPADRAARPELR 347 (892)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 38999788544676589998871841899999986387777897500123168984565552046656741013675310
Q ss_pred ECCCCCCCCCCCCC-CCCCCCCCHHHHCCCCHHHH---HHHHHHHCCC
Q ss_conf 20121147766666-77310010022226768999---9989975037
Q gi|254780439|r 414 RFTFEKFPGSDVTL-TTSMKSVGEVMAIGRTFAES---LQKALRGLET 457 (1162)
Q Consensus 414 ~f~f~kf~~~~~~L-gt~MkS~GEvm~iGr~f~eA---~~KAlrsle~ 457 (1162)
+|---|++|-..++ |.----.|-|++.|++-..+ .-.++++|..
T Consensus 348 ~~~~~~~~g~~~~~~gdf~dr~~~vi~~~~~~~~~~~~~~~~~~~l~~ 395 (892)
T PRK02186 348 HFHPIKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSI 395 (892)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 246658998642447776654363310378877899888877667644
No 61
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.91 E-value=2.4e-22 Score=194.73 Aligned_cols=188 Identities=20% Similarity=0.305 Sum_probs=154.4
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99987898886200023443333323333333444444443333222111111233444444455444899999999987
Q gi|254780439|r 135 AMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDE 214 (1162)
Q Consensus 135 ~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~ 214 (1162)
+|++.|+|||+...+...+ .+.+.+.+++++
T Consensus 1 ll~~~Giptp~~~~v~~~~-------------------------------------------------~~~~~~~~i~~~ 31 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTRED-------------------------------------------------WVLATIEKVEEK 31 (201)
T ss_pred CHHHCCCCCCCEEEEECCC-------------------------------------------------CCHHHHHHHHHH
T ss_conf 9556599999908982532-------------------------------------------------343579999986
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 19969994132678664511169999999999899857998279866449978999999972899889996300000010
Q gi|254780439|r 215 IGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG 294 (1162)
Q Consensus 215 iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G 294 (1162)
+|||++|||+++++|.|+.+|+|.+||..+++.+++.+ ++++||+||.| +|+++.|++|. +..+...+|...+.+
T Consensus 32 lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~~~--~~vlVEefi~G-~E~~v~vl~~~--~~~~~~~~e~~~~~~ 106 (201)
T pfam07478 32 LGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQYD--NKVLIEEAIEG-REIECAVLGNE--DLEVSPVGEIRLSGG 106 (201)
T ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCC-CEEEEEEEECC--CEEEEEEEEEECCCC
T ss_conf 59988999899998668799958468799999987459--80799985669-67999997089--808987589943775
Q ss_pred CC-------CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--
Q ss_conf 00-------01013433732289889999999999999871834576468999955898499985044--43103578--
Q gi|254780439|r 295 VH-------TGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL-- 363 (1162)
Q Consensus 295 iH-------tGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal-- 363 (1162)
++ .+.+..+.|+ .|+++..+++++.|++++++||+ .|.++|+|.++ ++|+.||+|+|| -++++|.|
T Consensus 107 ~~~~~~k~~~~~~~~~~Pa-~l~~~~~~~i~~~A~~~~~aLg~-~g~~rvD~~~d-~~g~~~vlEvN~~Pg~~~~s~~~~ 183 (201)
T pfam07478 107 FYDYEAKYILSSAQIIVPA-DLPEEVEEQIQELALKAYKALGC-RGLARIDFFLT-EDGEIYLNEVNTMPGFTSISLYPR 183 (201)
T ss_pred EEEHHHEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEC-CCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 0267680136872376156-68599999999999999998488-76057999996-899499999549799986769999
Q ss_pred HHHHHCCCHHHHHHHH
Q ss_conf 8876346147677764
Q gi|254780439|r 364 ASKATGFPIAKIAAKL 379 (1162)
Q Consensus 364 askatgypia~vaakl 379 (1162)
+.++.|++...+..+|
T Consensus 184 ~a~~~G~sy~~l~~~i 199 (201)
T pfam07478 184 MWAAAGLSYPDLIDQL 199 (201)
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9998199999999998
No 62
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.91 E-value=1.3e-22 Score=196.90 Aligned_cols=178 Identities=14% Similarity=0.188 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 28678999888709866854211215665556553697167513444456541255489999999997521013221111
Q gi|254780439|r 736 EDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKR 815 (1162)
Q Consensus 736 EDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~ 815 (1162)
.||..-+++|.+.|||+|++..++|.+|+.++++++|||++|||++..||++|.+|+|++|+..++..++...
T Consensus 1 gdK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~------- 73 (193)
T pfam01071 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQK------- 73 (193)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHC-------
T ss_conf 9889999999986989999078789999999999769988999743467883799545899999999998523-------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCC-----HHCCCCCCEEEEECCCCCCHHHH
Q ss_conf 2233333333455777745670220120100101023079849998520110-----21524576279816866899999
Q gi|254780439|r 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPSRSLSQQLK 890 (1162)
Q Consensus 816 ~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE-----~aGVHSGDS~~v~PpqsLs~~~~ 890 (1162)
...+..++|||++||+ +.|+.|++++||+.+.+..+.++.. ..|.|+|+.-.+.|+..++++..
T Consensus 74 ----------~~~~~~~~vlvEefl~-G~E~sv~~~~dg~~~~~~~~~~~~k~~~~~d~g~~tg~~g~~~p~~~~~~~~~ 142 (193)
T pfam01071 74 ----------KFGEAGEPVVIEEFLE-GEEVSVLAFVDGKTVKPLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELL 142 (193)
T ss_pred ----------CCCCCCCCEEEEEECC-CCEEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHH
T ss_conf ----------0357899789987205-71655789840997997142176445015788887799724634755898999
Q ss_pred HHHHH-H---HHHHHHHCC--CCCCCEEEEEECCCEEEEEEECCCCC
Q ss_conf 99999-9---999987413--35762478851288599985244445
Q gi|254780439|r 891 DELIS-Q---TKALAGALN--VIGLINVQYAIKDGKIYILEVNPRAS 931 (1162)
Q Consensus 891 ~~i~~-~---t~~ia~~L~--v~G~~NIQfa~kd~~iYVIEvNpRaS 931 (1162)
+++.+ + +.+..++.+ ++|++|+||.+.++..||||+|||..
T Consensus 143 ~~~~~~i~~~~~~al~~~g~~~~G~~h~e~~lt~~GP~vIEiN~RlG 189 (193)
T pfam01071 143 ERIKETIVEPTVDGLRKEGIPYKGVLYAGLMLTKDGPKVLEFNCRFG 189 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEEEECCCC
T ss_conf 99999999999999997499968899999999899579999939998
No 63
>PRK07206 hypothetical protein; Provisional
Probab=99.90 E-value=1e-19 Score=173.91 Aligned_cols=296 Identities=19% Similarity=0.250 Sum_probs=219.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC---EEECCCC--CCCCEEECCCCHHHHHHHHHHHC
Q ss_conf 699997677542050546668889999999987978999748765---0107845--13100433799999999998628
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA---TIMTDPD--LADATYTEPITPEVVAKIIEKER 82 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa---Ti~TD~~--~aD~vY~ePlt~e~v~~Ii~~E~ 82 (1162)
|+|+|+-. . .+|..-..++++.|+.+|-|-|.+. ......+ .....++ --+.....+.++.-+
T Consensus 3 ~~vviVDp--~---------StG~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (415)
T PRK07206 3 KKVVIVDP--F---------SSGKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRI-IKHIDETIEFLRQLG 70 (415)
T ss_pred CEEEEECC--C---------CCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHHCC
T ss_conf 55999867--6---------51879999999739828999837988435442324343433210-578999999998629
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
|+||+|+ +..+..||-.|.+. +|... |-.+..-..--|+.+.++.+.+.|+|+|+++..+
T Consensus 71 ~~aVi~g--~E~gV~lAd~La~~-----LgLp~-~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~------------ 130 (415)
T PRK07206 71 PDAVIAG--AESGVELADRLAER-----LGLCY-ANAPALSSARRNKYEMINALANAGLPAIRQIDTA------------ 130 (415)
T ss_pred CCEEEEC--CHHHHHHHHHHHHH-----HCCCC-CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECC------------
T ss_conf 7299978--55659999999998-----68998-9955688774599999999997599855388529------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 3333444444443333222111111233444444455444899999999987---1996999413267866451116999
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDE---IGLPLIIRPSFTLGGTGGGIAYNRS 239 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~---iGyPvivRps~~lGG~G~~iv~n~e 239 (1162)
+.+++..++++ +||||+|||.-+-|..|-.+|+|.+
T Consensus 131 -----------------------------------------~~~e~~~~~~~~~~~~~PvVvKP~~gagS~gV~~c~~~~ 169 (415)
T PRK07206 131 -----------------------------------------DWEEASAWIRVNNLWDSPVVIKPLESAGSDGVFFCPDKQ 169 (415)
T ss_pred -----------------------------------------CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCHH
T ss_conf -----------------------------------------999999999860557999899589999879989979999
Q ss_pred HHHHHHHHHHHH-----CCCCCEEEEEECCCCEEEEEEEE-EECCCCEEEEEECCCCC-CCCCCCCEEEEECCCCCCCHH
Q ss_conf 999999989985-----79982798664499789999999-72899889996300000-010000101343373228988
Q gi|254780439|r 240 EFLEIVENGLHA-----SPTTEVLIEESVLGWKEYELEMM-RDIKGNCIVVCSIENLD-PMGVHTGDSITVAPALTLTDK 312 (1162)
Q Consensus 240 eL~~~~~~al~~-----s~~~~vlIeksl~g~kEiE~eVi-rD~~gn~i~v~~~En~d-p~GiHtGDSi~vaP~qTL~d~ 312 (1162)
|++++++..+.. .+..++++|+||.| +|+-+|.+ +|+.-.+.-++.-.-.. |-+..--|..-+.| .++.
T Consensus 170 el~~a~~~i~~~~n~~g~~~~~vLveEyl~G-~EysVe~vs~~G~h~v~~i~~y~k~~~~~~~~~~~~~~~~p---~~~~ 245 (415)
T PRK07206 170 DAYHAFNAILGKANKLGLVNESVLVQEFLIG-TEYVVNTVSINGNHLVTEIVRYHKTSLNRGSVVYDYDELLP---CTSP 245 (415)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CEEEEEEEEECCCEEEEEEEEECCCCCCCCCEEEECCEECC---CCHH
T ss_conf 9999999985665435786753887541468-57899999878968999999972556899865653203569---9848
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCH--HHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 99999999999998718345764689999558984999850444310--35788876346147677764134
Q gi|254780439|r 313 EYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSR--SSALASKATGFPIAKIAAKLAVG 382 (1162)
Q Consensus 313 ~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sR--ssalaskatgypia~vaakl~~G 382 (1162)
+++.|.+.+.++.++||++.|.+|.++-+++ +| -++||+|+|+.- ...++..+|||.....+..+.++
T Consensus 246 ~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~-~g-p~liE~~~R~~G~~~~~~~~~~~g~~~~~~~v~~~l~ 315 (415)
T PRK07206 246 EYQELVDYTKKALDALGIKNGPAHAEIMLTS-DG-PVLIETGARLDGGLHPDAARVATGFSQLDLTAQSLAD 315 (415)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CC-CEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCC
T ss_conf 9999999999999983877577218999828-98-2899967877898647899870587999999998509
No 64
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.90 E-value=2.1e-19 Score=171.40 Aligned_cols=351 Identities=19% Similarity=0.305 Sum_probs=256.9
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf 77741899727630201476653189999999996598069960686521123245863798416-78899999987485
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESL-TEEDILEILRVEQQ 694 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEpl-t~E~V~~I~~~E~p 694 (1162)
.++++|.|||+|-. +-.-+.+.+++||++++.-.+|. +.....||+.+.-+. ..+.+.+.++. .
T Consensus 5 ~p~~tIGIlGgGQL-----------grMla~aA~~lG~~v~vldp~~~--~PA~~va~~~~~~~~~D~~al~~fa~~--~ 69 (377)
T PRK06019 5 LPGKTIGIIGGGQL-----------GRMLALAAAPLGYKVIVLDPDAD--CPAAQVADRVIVADYDDVAALRELAEQ--C 69 (377)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCC--CCHHHHCCEEEECCCCCHHHHHHHHHC--C
T ss_conf 99999999878689-----------99999999978998999848984--984783784898688989999999845--9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 67822799844512466898888875983861275203310286789998887098668542112156655565536971
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyP 774 (1162)
+ |++-=--+.+...-..|++.+ + +=++++++..+.||.+-.++++++|||.|+|..+.|.+|...+++++|||
T Consensus 70 D-----viT~E~EnI~~~~L~~le~~~-~-v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P 142 (377)
T PRK06019 70 D-----VITYEFENVPAEALDLLAARV-P-VPPGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLP 142 (377)
T ss_pred C-----EEEECCCCCCHHHHHHHHHCC-C-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 9-----999781768999999997089-6-68798999988627999999997699988806718999999999972997
Q ss_pred EEEECCCC-CCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 67513444-45654125548999999999752101322111122333333334557777456702201201001010230
Q gi|254780439|r 775 LLIRPSYV-LGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853 (1162)
Q Consensus 775 VLVRPSyV-LGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D 853 (1162)
++++++.- --|+|..++.+.+++...... ....|+++|+|+.-.+|+-|-+.|+
T Consensus 143 ~vlKt~~~GYDGKGq~~i~s~~dl~~a~~~-------------------------l~~~~~i~E~~i~f~~ElSvivaR~ 197 (377)
T PRK06019 143 AVLKTRRGGYDGKGQWVLRSEADLDAAWAA-------------------------LGSGPCILEEFVPFEREVSVIVARG 197 (377)
T ss_pred EEEECCCCCCCCCCCEEECCHHHHHHHHHH-------------------------CCCCCEEEEEEECCEEEEEEEEEEC
T ss_conf 699513346188701897788899999986-------------------------5699889996543518999999984
Q ss_pred C-CCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCC
Q ss_conf 7-984999852011021524576279816866899999999999999987413357624788512885999852444456
Q gi|254780439|r 854 N-DQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASR 932 (1162)
Q Consensus 854 g-~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSR 932 (1162)
. +++..+-+.||+-.-|| -..+.-|..+++...++.++++.+++.+|+++|.+.|+|-+.++.+||=|+.||---
T Consensus 198 ~~G~~~~yP~~en~h~~gi----l~~s~~Pa~~~~~~~~~a~~ia~~i~~~l~~vGvl~VE~F~~~~~llvNEiAPRpHN 273 (377)
T PRK06019 198 RDGEVVFYPLVENVHRNGI----LRTSIAPAPISADLQAQAEEIASRIAEELDYVGVLAVEFFVTGDGLLVNEIAPRVHN 273 (377)
T ss_pred CCCCEEEECCHHCEEECCE----EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCC
T ss_conf 8999999444114777775----589988999999999999999999999748762499999991893899972588768
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE-EEC-CCHHHCCCCCC--------CCCCCCCC
Q ss_conf 304567773988999999998597210024666677776668738997-203-88344599986--------70775631
Q gi|254780439|r 933 TVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVK-ESV-FPFNKFPGVDI--------LLGPEMRS 1002 (1162)
Q Consensus 933 tvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK-~pv-FsF~k~~g~D~--------~LGpEMkS 1002 (1162)
|==++=-+....=-+.-.|+.+|-+|.+... ..| +...+..+-. .+. -.+...|++.. ..|-.|
T Consensus 274 SGH~Ti~~~~~SQFe~HlRAi~glpl~~~~~---~~p-a~M~NilG~~~~~~~~~~~~~~~~~~h~YgK~e~r~gRKm-- 347 (377)
T PRK06019 274 SGHWTIDACSTSQFEQHLRAIAGLPLGSTEL---LSP-AVMVNLLGDDVEPDWDDLLALPGAHLHWYGKAEARPGRKM-- 347 (377)
T ss_pred CCCEEECCCCCCHHHHHHHHHCCCCCCCCCC---CCC-EEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCE--
T ss_conf 7547642341248999999982998888544---476-6999983775313699997199988997689878899826--
Q ss_pred CEEEEEEECCHHHHHHHHHHHC
Q ss_conf 0137774199999999999983
Q gi|254780439|r 1003 TGEVIGIDQDFPLAFAKSQLGI 1024 (1162)
Q Consensus 1003 TGEVmgig~~~~eA~~Ka~~a~ 1024 (1162)
|-|--.|.+..+|..|+....
T Consensus 348 -GHit~~~~~~~~~~~~~~~~~ 368 (377)
T PRK06019 348 -GHVTVLGDDVEALLEKAEALA 368 (377)
T ss_pred -EEEEEECCCHHHHHHHHHHHH
T ss_conf -899983199999999999999
No 65
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.90 E-value=9.3e-20 Score=174.24 Aligned_cols=306 Identities=17% Similarity=0.259 Sum_probs=217.7
Q ss_pred CEEEEECCCCCCCCCHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCE--EEC--CCCC---CCCEEECC--CC-----
Q ss_conf 699997677542050546668---8899999999879789997487650--107--8451---31004337--99-----
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDY---SGTQACKALKEEGYRIILVNSNPAT--IMT--DPDL---ADATYTEP--IT----- 70 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaT--i~T--D~~~---aD~vY~eP--lt----- 70 (1162)
+||.|+-.|+- .|.|- ||.++.++|++.||++..|.-+..- ... +.+. .+...+.+ ..
T Consensus 4 ~kI~Vl~GG~S-----~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (344)
T PRK01966 4 IRVALLFGGRS-----AEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLA 78 (344)
T ss_pred CEEEEEECCCC-----CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999958788-----2189999999999997615088599999837988772564111102454210123444322234
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999862898899758870268888998875962882875714998999860588999999998789888620002
Q gi|254780439|r 71 PEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 71 ~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
.....---...+.|.+.+.+-|.-|=+=+. .|.|+.+||..-|..+.+-..+=|+..+++.|.+.|+|||++..++
T Consensus 79 ~~~~~~~~~~~~~D~vf~alHG~~GEDG~i----QglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~ 154 (344)
T PRK01966 79 LPGFYEGQLIIEVDVVFPVLHGPPGEDGTI----QGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLT 154 (344)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 553221000356789999068999767099----9999975999368848999987669999999998799989839981
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 34433333233333334444444433332221111112334444444554448999999999871996999413267866
Q gi|254780439|r 151 ATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGT 230 (1162)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~ 230 (1162)
..+ ..........++|||++|||+..+.-.
T Consensus 155 ~~~--------------------------------------------------~~~~~~~~~~~l~~P~iVKP~~~GSSi 184 (344)
T PRK01966 155 RSR--------------------------------------------------REEAIAEVEEKLGLPVFVKPANLGSSV 184 (344)
T ss_pred CCC--------------------------------------------------CHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 666--------------------------------------------------234589999861898799328996343
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC--------CCCCEEEE
Q ss_conf 4511169999999999899857998279866449978999999972899889996300000010--------00010134
Q gi|254780439|r 231 GGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG--------VHTGDSIT 302 (1162)
Q Consensus 231 G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G--------iHtGDSi~ 302 (1162)
|..+|+|.+||..++..+++.. .+++||+||.| +|+.+-|+.. +++....-..|-.-+-+ ...|-+..
T Consensus 185 Gvs~v~~~~el~~ai~~a~~~~--~~vlvEefI~G-rE~tv~vl~~-~~~~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~ 260 (344)
T PRK01966 185 GISKVKNEEELEAALDLAFEYD--RKVLVEQGIKG-REIECAVLGY-NDEPVASVPGEIVKDNDFYDYEAKYIDDSGATL 260 (344)
T ss_pred CEEEECCHHHHHHHHHHHHHCC--CCCEEECCCCC-EEEEEEEECC-CCCEEEECCEEECCCCCCCCHHHCCCCCCCCEE
T ss_conf 2599689999999999998639--75057512444-8999999748-994677311587179875148881046897169
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--HHHHHCCCHHHHHHH
Q ss_conf 33732289889999999999999871834576468999955898499985044--43103578--887634614767776
Q gi|254780439|r 303 VAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL--ASKATGFPIAKIAAK 378 (1162)
Q Consensus 303 vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal--askatgypia~vaak 378 (1162)
+.|+ .|+++..+++++.|.++.++||.+ |.+-|-|.++ +++++|++|+|| -++.+|-| +.|+-|+....+..+
T Consensus 261 ~~Pa-~l~~~~~~~i~~~a~~~~~~lg~r-g~~RiDf~~d-~~g~~y~lEvNt~PGmT~~Sl~p~~a~~~G~s~~~li~~ 337 (344)
T PRK01966 261 VIPA-DLSEELTEQIRELAIKAFKALGCS-GLARVDFFLT-EDGEIYLNEINTLPGFTPISMYPKLWEASGLSYPELIDR 337 (344)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEE-CCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 6678-899999999999999999981997-2798989990-899889998208999875478999999809999999999
Q ss_pred H
Q ss_conf 4
Q gi|254780439|r 379 L 379 (1162)
Q Consensus 379 l 379 (1162)
|
T Consensus 338 i 338 (344)
T PRK01966 338 L 338 (344)
T ss_pred H
T ss_conf 9
No 66
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.90 E-value=3.5e-21 Score=185.53 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 58899999999878988862000234433333233333334444444433332221111112334444444554448999
Q gi|254780439|r 127 EDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMA 206 (1162)
Q Consensus 127 edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 206 (1162)
+||...+++|++.|+|+|+...+ +|.+
T Consensus 1 gdK~~~r~~l~~~gip~p~~~~~-----------------------------------------------------~~~~ 27 (193)
T pfam01071 1 GSKSFAKDFMKRHGIPTAEYETF-----------------------------------------------------TDPE 27 (193)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEE-----------------------------------------------------CCHH
T ss_conf 98899999999869899990787-----------------------------------------------------8999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCCEEEEEEEEEECCCCEE
Q ss_conf 999999871996999413267866451116999999999989985----7998279866449978999999972899889
Q gi|254780439|r 207 VAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHA----SPTTEVLIEESVLGWKEYELEMMRDIKGNCI 282 (1162)
Q Consensus 207 ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~----s~~~~vlIeksl~g~kEiE~eVirD~~gn~i 282 (1162)
+|.++++++|||++|||++..||+|+.+|+|++|+..++.+.+.. ++.++|+||+||.| .|+.++++.|+. +++
T Consensus 28 ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~~~~~~~~~vlvEefl~G-~E~sv~~~~dg~-~~~ 105 (193)
T pfam01071 28 EAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGEPVVIEEFLEG-EEVSVLAFVDGK-TVK 105 (193)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC-CEEEEEEEEECC-EEE
T ss_conf 999999976998899974346788379954589999999999852303578997899872057-165578984099-799
Q ss_pred EEEECCCCC-----CCCCCCCEEEEECCCCCCCHHHHHHHHHH----HHHHHHHHCCC-CCCCEEEEEEECCCCEEEEEE
Q ss_conf 996300000-----01000010134337322898899999999----99999871834-576468999955898499985
Q gi|254780439|r 283 VVCSIENLD-----PMGVHTGDSITVAPALTLTDKEYQLMRNA----AIAVLKEIGVE-SGGANVQFAVNPKNGKMVVIE 352 (1162)
Q Consensus 283 ~v~~~En~d-----p~GiHtGDSi~vaP~qTL~d~~~q~LR~~----a~kI~r~lgi~-vG~~nVQFAv~p~~~~~yvIE 352 (1162)
+++..++.. ..|.|||..-.++|+..++++..+.+.+. +.+.+++.|+. .|.+|+||.+.+ ++ -||||
T Consensus 106 ~~~~~~~~k~~~~~d~g~~tg~~g~~~p~~~~~~~~~~~~~~~i~~~~~~al~~~g~~~~G~~h~e~~lt~-~G-P~vIE 183 (193)
T pfam01071 106 PLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKEGIPYKGVLYAGLMLTK-DG-PKVLE 183 (193)
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC-CC-EEEEE
T ss_conf 71421764450157888877997246347558989999999999999999999749996889999999989-95-79999
Q ss_pred ECCCCC
Q ss_conf 044431
Q gi|254780439|r 353 MNPRVS 358 (1162)
Q Consensus 353 vNpR~s 358 (1162)
+|||+.
T Consensus 184 iN~RlG 189 (193)
T pfam01071 184 FNCRFG 189 (193)
T ss_pred EECCCC
T ss_conf 939998
No 67
>KOG0368 consensus
Probab=99.89 E-value=2.2e-21 Score=187.08 Aligned_cols=306 Identities=18% Similarity=0.243 Sum_probs=249.9
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEE--------EEECCCCCC---CCCCCCCCEEEEEE--------
Q ss_conf 41899727630201476653189999999996598069--------960686521---12324586379841--------
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETI--------MINCNPETV---STDYDIADRLYFES-------- 679 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tI--------mIN~NPETV---STDyd~sDrLYFEp-------- 679 (1162)
+||+|---| -.+|.|+++.|+--|+|- ..=--||-. |----++|. |.|-
T Consensus 55 ~kILIAnNG-----------iAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADq-yvevPgGtNnNN 122 (2196)
T KOG0368 55 KRILIANNG-----------IAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQ-YVEVPGGTNNNN 122 (2196)
T ss_pred EEEEEECCC-----------HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH-EEECCCCCCCCC
T ss_conf 788870565-----------88999999999999997387660899996687888766888631011-433788888777
Q ss_pred -CCHHHHHHHHHHHCCCCCCCEEEEECCCHHHH-HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCC-
Q ss_conf -67889999998748567822799844512466-898888875983861275203310286789998887098668542-
Q gi|254780439|r 680 -LTEEDILEILRVEQQKGELVGIIVQFGGQTPL-KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNG- 756 (1162)
Q Consensus 680 -lt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~-~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~- 756 (1162)
-..+-|++|.++-.-+. |-.-.|--.-+ .|-+.|.++|+-++|++..++-.-.|+..=+-+....++|..+|.
T Consensus 123 yANVdlIvdiAe~~~VdA----VWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSG 198 (2196)
T KOG0368 123 YANVDLIVDIAERTDVDA----VWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSG 198 (2196)
T ss_pred CCCHHHHHHHHHHCCCCE----EEECCCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 301899998887435535----7615554456842578897679289889467777632168778988754997214468
Q ss_pred -------------------------CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf -------------------------1121566555655369716751344445654125548999999999752101322
Q gi|254780439|r 757 -------------------------ISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSE 811 (1162)
Q Consensus 757 -------------------------~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~ 811 (1162)
-++|.+|+++.|++|||||||+.|-..||.|.+-|.|++++...+.++...
T Consensus 199 S~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E---- 274 (2196)
T KOG0368 199 SGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE---- 274 (2196)
T ss_pred CCCEEEEEECCCCEEECCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHH----
T ss_conf 8631445505676273578986534308888999999862983699954578976613045667899999999855----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 11112233333333455777745670220120100101023079849998520110215245762798168668999999
Q gi|254780439|r 812 EIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKD 891 (1162)
Q Consensus 812 ~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~ 891 (1162)
.|..|+.+=|...+|+|+||+.++|.....|.- .-+-+......+.-+...|.---+.++.+
T Consensus 275 -----------------vPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsL-fgRDCSiQRRhQKIIEEAPatIap~etf~ 336 (2196)
T KOG0368 275 -----------------VPGSPIFLMKLADQARHLEVQLLADQYGNVISL-FGRDCSIQRRHQKIIEEAPATIAPPETFK 336 (2196)
T ss_pred -----------------CCCCCEEHHHHCCCCCEEEEEHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf -----------------899955520033675402100224530878777-43662377877788761885417889999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEE--CCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999998741335762478851--2885999852444456304567773988999999998597210024
Q gi|254780439|r 892 ELISQTKALAGALNVIGLINVQYAI--KDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASI 962 (1162)
Q Consensus 892 ~i~~~t~~ia~~L~v~G~~NIQfa~--kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~ 962 (1162)
+|.+.+.++|+-+|+++.++|+|++ +++++|++|.|||.+..+|-+.-+.|++|...+.++++|-+|..+.
T Consensus 337 ~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~ 409 (2196)
T KOG0368 337 KMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIP 409 (2196)
T ss_pred HHHHHHHHHHHHHCCEECCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCH
T ss_conf 9999999998763611133689997258981799962763024677525551578608999998598510054
No 68
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.89 E-value=1.3e-19 Score=173.20 Aligned_cols=279 Identities=23% Similarity=0.291 Sum_probs=224.6
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 777418997276302014766531899---99999996598069960686521123245863798416788999999874
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCC---HASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVE 692 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v---~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E 692 (1162)
..++||.||-+|+- .|-+-+.. +...+|++.||+++.|.-+. +....+..+
T Consensus 2 ~~~~kI~vl~GG~S-----~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~---------------------~~~~~l~~~ 55 (304)
T PRK01372 2 KMFGKVAVLMGGTS-----AEREVSLNSGAAVLAALREAGYDAHPIDPGE---------------------DPAAELKEL 55 (304)
T ss_pred CCCCCEEEEECCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHC
T ss_conf 87771899936787-----1289999999999998837599799982896---------------------467787533
Q ss_pred CCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 85678227998445124668--9888887598386127520331028678999888709866854211215665556553
Q gi|254780439|r 693 QQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE 770 (1162)
Q Consensus 693 ~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~ 770 (1162)
+++- |+.-+-|.-... +-.-|+..|++.-|+++.+--++-|+..+.+++...|||+|+|..++..++.....++
T Consensus 56 ~~D~----vf~~lHG~~GEDG~iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~ 131 (304)
T PRK01372 56 GFDR----VFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDK 131 (304)
T ss_pred CCCE----EEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 9999----999068999856499999998599835799899877653899999999869998984998653139999876
Q ss_pred CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 69716751344445654125548999999999752101322111122333333334557777456702201201001010
Q gi|254780439|r 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDA 850 (1162)
Q Consensus 771 iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDa 850 (1162)
+|||++|+|....+..|+.+|++.+||...+..++. -+..||||+|+. ++|+.|-+
T Consensus 132 l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~a~~-----------------------~~~~vLvE~~I~-GrEitv~V 187 (304)
T PRK01372 132 LGLPLVVKPAREGSSVGVTKVKEADELPAALELAFK-----------------------YDDEVLVEKYIK-GRELTVAV 187 (304)
T ss_pred HCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-----------------------CCCCCEEEEEEC-CEEEEEEE
T ss_conf 189879976688866653896698899999999874-----------------------488625450256-56999999
Q ss_pred EEECCCEEEEEEECCCC-------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEE
Q ss_conf 23079849998520110-------21524576279816866899999999999999987413357624788512-88599
Q gi|254780439|r 851 LCQNDQVIVVGIIEHIE-------EAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIY 922 (1162)
Q Consensus 851 i~Dg~~v~I~gimEHiE-------~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iY 922 (1162)
+.+. ++ .++|-+- .+--++|++..+.|++ |+++..++|++.+.++.++|+.+|...+.|.++ ++++|
T Consensus 188 lg~~--~l--p~~eI~~~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~g~aRvDf~~~~~g~~~ 262 (304)
T PRK01372 188 LGGK--AL--PVIRIVPPGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALALRAYKALGCRGWGRVDFMLDEDGKPY 262 (304)
T ss_pred ECCC--CC--CEEEEECCCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEE
T ss_conf 8997--77--538994599875776612557741100689-999999999999999999849973698899990799789
Q ss_pred EEEECCCCC----CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 985244445----6304567773988999999998
Q gi|254780439|r 923 ILEVNPRAS----RTVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 923 VIEvNpRaS----RtvPfvSKatG~pl~~iAt~v~ 953 (1162)
++|+||=-. =-+|-.+++.|+++.++..+++
T Consensus 263 ~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~ii 297 (304)
T PRK01372 263 LLEVNTSPGMTSHSLVPMAARAAGISFSELVVWIL 297 (304)
T ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99833999987415899999981999999999999
No 69
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.88 E-value=1.1e-20 Score=181.49 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=155.5
Q ss_pred HHHHCCCCCCCCCCCCCHH----HHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8887098668542112156----655565536971675134444565412554899999999975210132211112233
Q gi|254780439|r 744 LLMELDLNQPRNGISHSVE----HARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPN 819 (1162)
Q Consensus 744 ll~~l~i~~p~~~~a~s~e----ea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~ 819 (1162)
+|++.|||+|+|..+.+.+ ++.++++++|||++|+|.+..+|.|+.+|+|.++|..++..+..
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~------------- 67 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQ------------- 67 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-------------
T ss_conf 9556599999908982532343579999986599889998999986687999584687999999874-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCC------CCCEEEEECCCCCCHHHHHHH
Q ss_conf 33333345577774567022012010010102307984999852011021524------576279816866899999999
Q gi|254780439|r 820 DKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIH------SGDSACSLPSRSLSQQLKDEL 893 (1162)
Q Consensus 820 ~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVH------SGDS~~v~PpqsLs~~~~~~i 893 (1162)
.+++++|++|+. ++|++|.++.++ +..+..++|++.+.|++ ..++.....|..++++..+++
T Consensus 68 ----------~~~~vlVEefi~-G~E~~v~vl~~~-~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i 135 (201)
T pfam07478 68 ----------YDNKVLIEEAIE-GREIECAVLGNE-DLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQI 135 (201)
T ss_pred ----------CCCCEEEEECCC-CCEEEEEEEECC-CEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHH
T ss_conf ----------598079998566-967999997089-80898758994377502676801368723761566859999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEEEECCCCC--C--CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998741335762478851-288599985244445--6--304567773988999999998
Q gi|254780439|r 894 ISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRAS--R--TVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 894 ~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVIEvNpRaS--R--tvPfvSKatG~pl~~iAt~v~ 953 (1162)
++++.+++++|+++|.++|+|.+ +++++||+|+||+-+ + .+|-.+++.|+++.++...+.
T Consensus 136 ~~~A~~~~~aLg~~g~~rvD~~~d~~g~~~vlEvN~~Pg~~~~s~~~~~a~~~G~sy~~l~~~iv 200 (201)
T pfam07478 136 QELALKAYKALGCRGLARIDFFLTEDGEIYLNEVNTMPGFTSISLYPRMWAAAGLSYPDLIDQLI 200 (201)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999984887605799999689949999954979998676999999981999999999985
No 70
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.87 E-value=8.4e-19 Score=166.67 Aligned_cols=282 Identities=16% Similarity=0.244 Sum_probs=223.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE-----EEEECCHHHHHHHHHHHCCCCCCCEEEEE--CCCHHHHHH
Q ss_conf 99999999965980699606865211232458637-----98416788999999874856782279984--451246689
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRL-----YFESLTEEDILEILRVEQQKGELVGIIVQ--FGGQTPLKL 713 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrL-----YFEplt~E~V~~I~~~E~p~g~~~~vi~q--~gGqt~~~l 713 (1162)
...+++.-+++||++|.+..+|.- |+.-... -.+-=+.+.+...+... +.+.||+.. +.--++-.|
T Consensus 16 G~l~lk~A~~lG~~pv~LT~dP~r----Y~~L~~~~~evI~vDT~d~dal~~~v~~~---~~IaGV~s~sDyyl~~AA~L 88 (892)
T PRK02186 16 GELLLRKALLRGFTPYFLTANRGK----YPFLDAIRVVTISADTSDPDRIHRFVSSL---DGVAGIMSSSEYFIEVASEV 88 (892)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHH----CHHHHHCCCEEEEECCCCHHHHHHHHHCC---CCCCEEEECCHHHHHHHHHH
T ss_conf 799999999749855898368343----52467517659993699999999997423---68526987405449999999
Q ss_pred HHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECC
Q ss_conf 88888759838612752033102867899988870986685421121566555655369716751344445654125548
Q gi|254780439|r 714 SKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYS 793 (1162)
Q Consensus 714 a~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~ 793 (1162)
+..| |+ =|+++++|..+-|+...++.|.+-|+++|.+..++|.+++..++.+|||||+|+|+-.-|-.+-.+|.|
T Consensus 89 A~~L---GL--PGp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGfPvVVKP~dgSGS~GVrLc~s 163 (892)
T PRK02186 89 ARRL---GL--PAANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTYPVVVKPRMGSGSVGVRLCAS 163 (892)
T ss_pred HHHH---CC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECC
T ss_conf 9981---98--998999999987199999999966999995688358878999998479998971688887768587689
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCC
Q ss_conf 99999999975210132211112233333333455777745670220120100101023079849998520110215245
Q gi|254780439|r 794 ENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHS 873 (1162)
Q Consensus 794 ~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHS 873 (1162)
.+||.+....... .....+||++|++ +-|+-|+.++.++...+.||-+--=.-+-|.
T Consensus 164 ~aEL~e~~~~l~~----------------------~r~~~vLVEEFie-GpEYSVEt~s~~G~~~VIGIT~K~l~~~P~F 220 (892)
T PRK02186 164 VAEAAAHCAALRR----------------------AGTRAALVQAYVE-GDEYSVETLTVARGHQVLGITRKHLGPPPHF 220 (892)
T ss_pred HHHHHHHHHHHHH----------------------CCCCCEEEEECCC-CCEEEEEEEEECCCEEEEEEEEEECCCCCEE
T ss_conf 9999999999971----------------------5488669997156-8878999999779679999986533899717
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCEEEEEEECCCCCC-CHH-HHHHHHCCCHHHHHH
Q ss_conf 7627981686689999999999999998741335-7624788512885999852444456-304-567773988999999
Q gi|254780439|r 874 GDSACSLPSRSLSQQLKDELISQTKALAGALNVI-GLINVQYAIKDGKIYILEVNPRASR-TVP-FIAKAIGFPVAKVAA 950 (1162)
Q Consensus 874 GDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~-G~~NIQfa~kd~~iYVIEvNpRaSR-tvP-fvSKatG~pl~~iAt 950 (1162)
=+.--.+|. .|++.++++|.+++.+.-.++|+. |+.|++|-+.++...|||+|||.-= ..| .+..+||++|.....
T Consensus 221 VE~GH~fPA-pL~~~~~~~I~d~v~raL~AlGl~~GpAHTEvklT~~GPvVIEINPRLAGGmIP~Lve~A~GvDll~~~~ 299 (892)
T PRK02186 221 VEIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (892)
T ss_pred EEECCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 870676789-9985899999999999999708666883289999389738999788544676589998871841899999
Q ss_pred HHHCCCCC
Q ss_conf 99859721
Q gi|254780439|r 951 RIIAGESL 958 (1162)
Q Consensus 951 ~v~lG~~L 958 (1162)
+..+|.+-
T Consensus 300 ~~~~g~~~ 307 (892)
T PRK02186 300 DLHLGVAA 307 (892)
T ss_pred HHHCCCCC
T ss_conf 98638777
No 71
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.85 E-value=6.1e-18 Score=159.86 Aligned_cols=357 Identities=19% Similarity=0.311 Sum_probs=257.1
Q ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEE-CCCCHHHHHHHHHH
Q ss_conf 77665569999767754205054666888999999998797899974876501078451310043-37999999999986
Q gi|254780439|r 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYT-EPITPEVVAKIIEK 80 (1162)
Q Consensus 2 P~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~-ePlt~e~v~~Ii~~ 80 (1162)
|.+..-+|||.+|||.. |....-+++.+|.+||.|+..+..= --..|++.|. -=|..+.+..++++
T Consensus 7 ~~~~~a~kvmLLGSGEL-----------GKEvaIe~QRLG~eVIAVDrY~~AP--AmqVAhrs~Vi~MlD~~al~avv~r 73 (394)
T COG0027 7 PLRPQATKVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSYVIDMLDGDALRAVVER 73 (394)
T ss_pred CCCCCCEEEEEECCCCC-----------CHHHHHHHHHCCCEEEEECCCCCCH--HHHHHHHEEEEECCCHHHHHHHHHH
T ss_conf 88877748999638864-----------4699998886387799963768980--6642111134545699999999986
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999-98789888620002344333332
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAM-QNIPLATPKSILANATDIKEHDR 159 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l-~~~gip~~~s~~~~~~~~~~~~~ 159 (1162)
|+||.|+|-.- |++... |. -|++.|.. +=++..+-+.+-||+..+++. +++|+|+.+.+.+.
T Consensus 74 e~Pd~IVpEiE---AI~td~-L~---elE~~G~~-VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~--------- 136 (394)
T COG0027 74 EKPDYIVPEIE---AIATDA-LV---ELEEEGYT-VVPNARATKLTMNREGIRRLAAEELGLPTSKYRFAD--------- 136 (394)
T ss_pred HCCCEEEEHHH---HHHHHH-HH---HHHHCCCE-ECCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC---------
T ss_conf 58981331356---664788-99---99867966-755327777342689899988997299976632135---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 33333334444444433332221111112334444444554448999999999871996999413267866451116999
Q gi|254780439|r 160 KLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRS 239 (1162)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~e 239 (1162)
|++|..++++.||||++|+|...-.|.|.-++.+.+
T Consensus 137 --------------------------------------------s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e 172 (394)
T COG0027 137 --------------------------------------------SLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPE 172 (394)
T ss_pred --------------------------------------------CHHHHHHHHHHCCCCEECCCCCCCCCCCCEEECCHH
T ss_conf --------------------------------------------599999999974997021332026889821435987
Q ss_pred HHHHHHHHHHHHC--CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCC--CCEEEEECCCCCCCHHHHH
Q ss_conf 9999999899857--99827986644997899999997289988999630000001000--0101343373228988999
Q gi|254780439|r 240 EFLEIVENGLHAS--PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVH--TGDSITVAPALTLTDKEYQ 315 (1162)
Q Consensus 240 eL~~~~~~al~~s--~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiH--tGDSi~vaP~qTL~d~~~q 315 (1162)
+++.+-+.|.... ..+.|.+|+++.==-||-+-.+|-.+||..+ .+|+|+- .||-.----+|.+|....+
T Consensus 173 ~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EITlLtvr~~~~~~~F------c~PIGHrq~dgdY~ESWQP~~mS~~al~ 246 (394)
T COG0027 173 DVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSF------CAPIGHRQEDGDYRESWQPQEMSEAALE 246 (394)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEEEEECCCCCC------CCCCCCCCCCCCHHCCCCCCCCCHHHHH
T ss_conf 8899999997547888871899987323279999999975588776------7776640578870103684103899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHH--HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-
Q ss_conf 9999999999871834576468999955898499985044431035--7888763461476777641344610135775-
Q gi|254780439|r 316 LMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS--ALASKATGFPIAKIAAKLAVGYTLDELGNDI- 392 (1162)
Q Consensus 316 ~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRss--alaskatgypia~vaakl~~G~~L~ei~~~~- 392 (1162)
.-+..|.+|..+||=+ |..-|++-++ .++.||-||.||---|- .|+|. ...---+-++-.+|...++++.-.
T Consensus 247 ~A~~IA~~vt~aLGG~-GlFGVElfv~--gDeV~FsEVSPRPHDTGmVTLiSq--~lsEF~LH~RAiLGLPi~~i~~~~P 321 (394)
T COG0027 247 EAQSIAKRVTDALGGR-GLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQ--DLSEFALHVRAILGLPIPEIRQISP 321 (394)
T ss_pred HHHHHHHHHHHHHCCC-CCEEEEEEEE--CCEEEEEECCCCCCCCCEEEEEEC--CCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 9999999999860586-3036899972--887898525789888724999706--5318999999995897642145254
Q ss_pred ----------------CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCC
Q ss_conf ----------------6777766657767768985442012114776666677310010022226768999998997503
Q gi|254780439|r 393 ----------------TGGKTPASFEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLE 456 (1162)
Q Consensus 393 ----------------~~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle 456 (1162)
...-..|.-+|..| +-.|-...- ...++| |=+++-+.+.++|.-||-+...
T Consensus 322 ~AS~vI~~~~~~~~~~f~~l~~AL~~p~t~-----vRlFGKP~~-~~~RRm-------GVaLA~a~~Ve~Are~A~~aa~ 388 (394)
T COG0027 322 AASAVILAQETSQAPTFDGLAEALGVPDTQ-----VRLFGKPEA-DGGRRL-------GVALATAESVEEARERARKAAS 388 (394)
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHCCCCCE-----EEEECCCCC-CCCCEE-------EEEEECCCCHHHHHHHHHHHHH
T ss_conf 300156033334677522288874589861-----798068756-667504-------6898427619999999998876
No 72
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=99.85 E-value=5.1e-18 Score=160.46 Aligned_cols=300 Identities=21% Similarity=0.364 Sum_probs=226.5
Q ss_pred CCHHHHHHH---HHHHHHHHHHC--------CCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHC-------
Q ss_conf 505466688---89999999987--------978999748765010784513100433799999999998628-------
Q gi|254780439|r 21 GQACEFDYS---GTQACKALKEE--------GYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKER------- 82 (1162)
Q Consensus 21 Gqa~EfDys---~~qa~~alke~--------Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~------- 82 (1162)
|..+|.+-| |....+||++. ||+++.|+.++.+ ..-.+|+. -+||+...+...+...+
T Consensus 8 G~S~EhEiSL~Sa~~v~~aL~~~~~FIF~deg~~v~~~~~~~~g---~w~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR01205 8 GKSAEHEISLVSAQAVLKALRSLLEFIFLDEGYDVYPVDIDKQG---SWVFSDAK-TEALVYKDLLQKLLEQGGPINLSS 83 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCC---CEECCCCC-CCCCCCCCHHHHHHHCCCCEECCC
T ss_conf 87650567589999999986520876653166489998622677---33003456-555211100467763589740146
Q ss_pred -----------------------CCEEEECCCCC-HHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHH
Q ss_conf -----------------------98899758870-268888998875962882875714998999860588999999998
Q gi|254780439|r 83 -----------------------PDAILPTTGGQ-TALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQN 138 (1162)
Q Consensus 83 -----------------------pDaIlp~~GGq-talnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~ 138 (1162)
+|-+.|-+=|. .|=.=+++ |.|+-+||+..|+.+.+=-.+=|+...|...++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~D~vF~~LHG~~~GEDGtiQ----GlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~ 159 (375)
T TIGR01205 84 LAQVSLLGESFLLEAESAEALEEIDVVFPVLHGPPYGEDGTIQ----GLLELLGIPYTGSGVLASALSMDKLLTKLLLKS 159 (375)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCHH----HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6741003556666644530204798899812185668555289----999970787037478999987428999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHCCC
Q ss_conf 7898886200023443333323333333444444443333222111111233444444455444899999-999987199
Q gi|254780439|r 139 IPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVA-VQALDEIGL 217 (1162)
Q Consensus 139 ~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea-~~~a~~iGy 217 (1162)
.|+|+|+...++..+ |......+.. ...++.+||
T Consensus 160 ~Glp~~~y~~l~~~~---------------------------------------------~~~~~~~~~~~~~~~~~lg~ 194 (375)
T TIGR01205 160 LGLPTPDYAVLRRKE---------------------------------------------RSSEDEAECENVAVLEKLGF 194 (375)
T ss_pred CCCCCCCCEEEEECC---------------------------------------------CCCCHHHHHHHHHHHHHCCC
T ss_conf 579744704675045---------------------------------------------44561346899999983689
Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE---CCCCEEEEEEEEEECCCCEEEEEE-CCCCCCC
Q ss_conf 699941326786645111699999999998998579982798664---499789999999728998899963-0000001
Q gi|254780439|r 218 PLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEES---VLGWKEYELEMMRDIKGNCIVVCS-IENLDPM 293 (1162)
Q Consensus 218 PvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeks---l~g~kEiE~eVirD~~gn~i~v~~-~En~dp~ 293 (1162)
|++|||+--+.==|+-+|.+++||+.+++.|+..+ ++|+||++ |.| +|+|+=++.+.. +.-++. .+-..+.
T Consensus 195 P~~VKPa~~GSSvG~~~V~~~~eL~~a~~~Af~~d--~~v~vE~~~~~i~g-rEl~v~~L~~~~--~lp~~~~~~~~~~~ 269 (375)
T TIGR01205 195 PVFVKPAREGSSVGISKVKSEEELEAALDEAFKYD--ERVIVEEFKQRIKG-RELEVSILGNEE--ALPIISIVPEIEPD 269 (375)
T ss_pred CEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCC--CEEEEEECCCCCCC-CEEEEEEEECCC--CCEEEECCCCCCCC
T ss_conf 78997346777577898467789999999861559--65999811147898-526898870797--43245406753567
Q ss_pred CC----------CCCE-EEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCC--CCH
Q ss_conf 00----------0010-13433732-2898899999999999998718345764689999558984999850444--310
Q gi|254780439|r 294 GV----------HTGD-SITVAPAL-TLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPR--VSR 359 (1162)
Q Consensus 294 Gi----------HtGD-Si~vaP~q-TL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR--~sR 359 (1162)
|+ -.++ ...+.|+. .|++++.+.||+.|+|+-++++.+ |..=|-|-+++.+|++|+.||||= ++-
T Consensus 270 g~~~FYDY~~KY~~~~g~~~~~pa~~~L~~~~~~~i~~~a~~ay~~~~~~-G~~R~DFf~~~~~G~~yLnEiNT~PGmT~ 348 (375)
T TIGR01205 270 GGSDFYDYEAKYLDGDGTEYVIPAPAGLDEELEEKIKELALKAYKALGCR-GLARVDFFLDKETGEIYLNEINTIPGMTA 348 (375)
T ss_pred CCCEECCHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 67600002114277887326515656788899999999999999840887-44899899872888699998768888720
Q ss_pred HH--HHHHHHHCCCHHHHHHHH
Q ss_conf 35--788876346147677764
Q gi|254780439|r 360 SS--ALASKATGFPIAKIAAKL 379 (1162)
Q Consensus 360 ss--alaskatgypia~vaakl 379 (1162)
.| |-+.++.|.-...+...|
T Consensus 349 ~Sl~P~~~~~~G~~f~~Lv~~~ 370 (375)
T TIGR01205 349 ISLFPKAAAAAGLEFEQLVERI 370 (375)
T ss_pred HHHHHHHHHHCCCCHHHHHHHH
T ss_conf 1269999997188878999999
No 73
>PRK07206 hypothetical protein; Provisional
Probab=99.84 E-value=4.4e-17 Score=153.06 Aligned_cols=291 Identities=17% Similarity=0.172 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEE----ECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 1899999999965980699606865211232458637984----167889999998748567822799844512466898
Q gi|254780439|r 639 YCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFE----SLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLS 714 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFE----plt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la 714 (1162)
....+-+.++++.||+.|-|-+.|..-...++.-|...|+ .-+.....+.++.-+|.+ || -|.-.+.-||
T Consensus 12 StG~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a----Vi--~g~E~gV~lA 85 (415)
T PRK07206 12 SSGKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDA----VI--AGAESGVELA 85 (415)
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCE----EE--ECCHHHHHHH
T ss_conf 51879999999739828999837988435442324343433210578999999998629729----99--7855659999
Q ss_pred HHHHHC-CCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCCCCCCEE
Q ss_conf 888875-98386127520331028678999888709866854211215665556553---69716751344445654125
Q gi|254780439|r 715 KILEKN-QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE---IGFPLLIRPSYVLGGRAMQI 790 (1162)
Q Consensus 715 ~~L~~~-gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~---iGyPVLVRPSyVLGG~~M~I 790 (1162)
..|.++ |++. |-.+......-|+....+.|.+.|++.|+...+++.+|+..++++ +||||+|+|--.-|..+-.+
T Consensus 86 d~La~~LgLp~-~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~gagS~gV~~ 164 (415)
T PRK07206 86 DRLAERLGLCY-ANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLESAGSDGVFF 164 (415)
T ss_pred HHHHHHHCCCC-CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEE
T ss_conf 99999868998-99556887745999999999975998553885299999999998605579998995899998799899
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECC-CCH-
Q ss_conf 548999999999752101322111122333333334557777456702201201001010230798499985201-102-
Q gi|254780439|r 791 VYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEH-IEE- 868 (1162)
Q Consensus 791 v~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEH-iE~- 868 (1162)
|.|.+|++.++...+... + .. -.....+|+++||. +.|+-||.++.++...+..+.+. -..
T Consensus 165 c~~~~el~~a~~~i~~~~-n-------------~~--g~~~~~vLveEyl~-G~EysVe~vs~~G~h~v~~i~~y~k~~~ 227 (415)
T PRK07206 165 CPDKQDAYHAFNAILGKA-N-------------KL--GLVNESVLVQEFLI-GTEYVVNTVSINGNHLVTEIVRYHKTSL 227 (415)
T ss_pred ECCHHHHHHHHHHHHCCC-C-------------CC--CCCCCCEEEEECCC-CCEEEEEEEEECCCEEEEEEEEECCCCC
T ss_conf 799999999999985665-4-------------35--78675388754146-8578999998789689999999725568
Q ss_pred -HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCEEEEEEECCCCCC--CHHHHHHHHCCC
Q ss_conf -152457627981686689999999999999998741335-7624788512885999852444456--304567773988
Q gi|254780439|r 869 -AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVI-GLINVQYAIKDGKIYILEVNPRASR--TVPFIAKAIGFP 944 (1162)
Q Consensus 869 -aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~-G~~NIQfa~kd~~iYVIEvNpRaSR--tvPfvSKatG~p 944 (1162)
-+..--|....+|+ ++..+++|.+++.+..++|+++ |+.+.++.+.++...+||+|+|..= ..+++.-++|++
T Consensus 228 ~~~~~~~~~~~~~p~---~~~~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~~gp~liE~~~R~~G~~~~~~~~~~~g~~ 304 (415)
T PRK07206 228 NRGSVVYDYDELLPC---TSPEYQELVDYTKKALDALGIKNGPAHAEIMLTSDGPVLIETGARLDGGLHPDAARVATGFS 304 (415)
T ss_pred CCCCEEEECCEECCC---CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCCC
T ss_conf 998656532035699---84899999999999999838775772189998289828999678778986478998705879
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999998597
Q gi|254780439|r 945 VAKVAARIIAGE 956 (1162)
Q Consensus 945 l~~iAt~v~lG~ 956 (1162)
.++.+..+.++.
T Consensus 305 ~~~~~v~~~l~~ 316 (415)
T PRK07206 305 QLDLTAQSLADP 316 (415)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999985093
No 74
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.83 E-value=7.5e-16 Score=143.33 Aligned_cols=271 Identities=18% Similarity=0.201 Sum_probs=161.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 999976775420505466688899999999879--789997487650107845131004337999999999986289889
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaI 86 (1162)
||||||||.= -.--+++|++.. -++....-||.|-. .+..+-+.....+.+.+..+++++|-+
T Consensus 2 kVLviGsGgR-----------EHAia~kl~~s~~v~~v~~~PGN~G~~~----~~~~~~i~~~d~~~l~~~a~~~~idlv 66 (424)
T PRK00885 2 KVLVIGSGGR-----------EHALAWKLAQSPLVEKVYVAPGNAGTAL----EAENVAIDVTDIEALVAFAKEEGIDLT 66 (424)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECCCHHHHH----CCEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 7999888889-----------9999999973979898999289758874----173651285799999999998499999
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97588702688889988759628828757149989998605889999999987898886200023443333323333333
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEER 166 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~ 166 (1162)
+++=-.- |+.-+.+ .|.+.|+.+.|++.++-+.=..|...+++|++.+||++.++..
T Consensus 67 iiGPE~p----L~~Gi~D--~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f----------------- 123 (424)
T PRK00885 67 VVGPEAP----LVAGIVD--AFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVF----------------- 123 (424)
T ss_pred EECCCHH----HHHHHHH--HHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-----------------
T ss_conf 9896678----8735799--9950699468949789887663799999999829898754886-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 44444444333322211111123344444445544489999999998719969994132678664511169999999999
Q gi|254780439|r 167 ENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE 246 (1162)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~ 246 (1162)
+|.++|.++.++.++|++|||.---+|.|-.|+.+.+|-.+++.
T Consensus 124 ------------------------------------~~~~~A~~~l~~~~~p~VIKaDGLAaGKGV~V~~~~~ea~~al~ 167 (424)
T PRK00885 124 ------------------------------------TDAEEAKAYLDEQGAPIVVKADGLAAGKGVVVAMTLEEAEAAVD 167 (424)
T ss_pred ------------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHH
T ss_conf ------------------------------------89999999998579988996176567775176378999999999
Q ss_pred HHHHH--CC--CCCEEEEEECCCCEEEEEEEEEECCCCEEEEE-ECCCC----CCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 89985--79--98279866449978999999972899889996-30000----001000010134337322898899999
Q gi|254780439|r 247 NGLHA--SP--TTEVLIEESVLGWKEYELEMMRDIKGNCIVVC-SIENL----DPMGVHTGDSITVAPALTLTDKEYQLM 317 (1162)
Q Consensus 247 ~al~~--s~--~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~-~~En~----dp~GiHtGDSi~vaP~qTL~d~~~q~L 317 (1162)
+-+.. ++ ...|+||++|.|+ |+-+-++.|++ |.+... ..+|= ...|-+||===+++|+.-++++..+++
T Consensus 168 ~i~~~~~fg~ag~~VvIEE~L~G~-E~S~~a~~DG~-~~~~lp~aqDhKR~~dgD~GPNTGGMGa~sP~p~~~~~~~~~i 245 (424)
T PRK00885 168 DMLAGNKFGDAGARVVIEEFLDGE-EASFFALVDGE-NVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVHDRV 245 (424)
T ss_pred HHHCCCCCCCCCCEEEEEECCCCC-EEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 985033234568728999705883-17999997899-7264702114750568999988998856678867999999999
Q ss_pred HH-HHHHHHHH-----HCCCCCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 99-99999987-----1834576468999955898499985044431
Q gi|254780439|r 318 RN-AAIAVLKE-----IGVESGGANVQFAVNPKNGKMVVIEMNPRVS 358 (1162)
Q Consensus 318 R~-~a~kI~r~-----lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~s 358 (1162)
.+ .-..+++. +.+ .|..-+++.+. .+ .-+|||-|-|+-
T Consensus 246 ~~~Ii~pt~~~l~~eg~~y-~GiLy~GlMit-~~-GpkVlEyN~RfG 289 (424)
T PRK00885 246 MEEIIEPTVKGMAAEGIPY-TGVLYAGLMIT-KD-GPKVIEFNCRFG 289 (424)
T ss_pred HHHHHHHHHHHHHHCCCCE-EEEEEEEEEEE-CC-CCEEEEEECCCC
T ss_conf 9987999999998579847-99987799986-79-755898631348
No 75
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.82 E-value=4.8e-17 Score=152.73 Aligned_cols=305 Identities=18% Similarity=0.213 Sum_probs=218.7
Q ss_pred CCEEEEECCCCEEECCCCCCCHH---HHHHHHHHHHCCCCEEEEECCCC----CCCCCCCCCCEEEEEECCHHHH-----
Q ss_conf 74189972763020147665318---99999999965980699606865----2112324586379841678899-----
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYC---CCHASFSLKEAGFETIMINCNPE----TVSTDYDIADRLYFESLTEEDI----- 685 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~---~v~a~~aLr~~G~~tImIN~NPE----TVSTDyd~sDrLYFEplt~E~V----- 685 (1162)
+++|.||-+|+- -|-|-+ .-+..++|++.||+++-|-.+++ +...+.+..+.--+........
T Consensus 3 k~kI~Vl~GG~S-----~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (344)
T PRK01966 3 KIRVALLFGGRS-----AEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLL 77 (344)
T ss_pred CCEEEEEECCCC-----CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 768999958788-----218999999999999761508859999983798877256411110245421012344432223
Q ss_pred ---HHHHHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf ---999987485678227998445124668--988888759838612752033102867899988870986685421121
Q gi|254780439|r 686 ---LEILRVEQQKGELVGIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHS 760 (1162)
Q Consensus 686 ---~~I~~~E~p~g~~~~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s 760 (1162)
........ -.++-|+.-+-|.-... +..-|+..|++.-|+.+.+--++=|+..+.+++...|||.|+|..++.
T Consensus 78 ~~~~~~~~~~~--~~~D~vf~alHG~~GEDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~ 155 (344)
T PRK01966 78 ALPGFYEGQLI--IEVDVVFPVLHGPPGEDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTR 155 (344)
T ss_pred CCCCCCCCCCC--CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 45532210003--5678999906899976709999999759993688489999876699999999987999898399816
Q ss_pred HHHH---HHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5665---5565536971675134444565412554899999999975210132211112233333333455777745670
Q gi|254780439|r 761 VEHA---RLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFD 837 (1162)
Q Consensus 761 ~eea---~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlId 837 (1162)
.+.. .....++|||++|+|....+-.|..+|.|.+||...+..++. -+.+|+|+
T Consensus 156 ~~~~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~-----------------------~~~~vlvE 212 (344)
T PRK01966 156 SRREEAIAEVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFE-----------------------YDRKVLVE 212 (344)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH-----------------------CCCCCEEE
T ss_conf 6623458999986189879932899634325996899999999999986-----------------------39750575
Q ss_pred EECCCCEEEEEEEEEECCCEEEEEEECCCCHHCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2201201001010230798499985201102152-------457627981686689999999999999998741335762
Q gi|254780439|r 838 SYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGI-------HSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLI 910 (1162)
Q Consensus 838 kfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGV-------HSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~ 910 (1162)
+|+. ++|+.|-++..++...+..+.|-+-..+. .++..+...+|-.+++++.++|++.+.++-++|+.+|..
T Consensus 213 efI~-GrE~tv~vl~~~~~~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~lg~rg~~ 291 (344)
T PRK01966 213 QGIK-GREIECAVLGYNDEPVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKALGCSGLA 291 (344)
T ss_pred CCCC-CEEEEEEEECCCCCEEEECCEEECCCCCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 1244-489999997489946773115871798751488810468971696678899999999999999999981997279
Q ss_pred EEEEEE-CCCEEEEEEECCCCC----CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 478851-288599985244445----6304567773988999999998
Q gi|254780439|r 911 NVQYAI-KDGKIYILEVNPRAS----RTVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 911 NIQfa~-kd~~iYVIEvNpRaS----RtvPfvSKatG~pl~~iAt~v~ 953 (1162)
-+-|.+ +++++|++|+||=-. =-+|-.+|+.|+.+.++..++.
T Consensus 292 RiDf~~d~~g~~y~lEvNt~PGmT~~Sl~p~~a~~~G~s~~~li~~ii 339 (344)
T PRK01966 292 RVDFFLTEDGEIYLNEINTLPGFTPISMYPKLWEASGLSYPELIDRLI 339 (344)
T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 898999089988999820899987547899999980999999999999
No 76
>PRK06849 hypothetical protein; Provisional
Probab=99.81 E-value=1.5e-16 Score=148.82 Aligned_cols=276 Identities=19% Similarity=0.249 Sum_probs=203.3
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECC--C-----CHHHHHHHH
Q ss_conf 556999976775420505466688899999999879789997487650107845131004337--9-----999999999
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEP--I-----TPEVVAKII 78 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~eP--l-----t~e~v~~Ii 78 (1162)
.-|.|||-|+--. .+-+.+|.|.+.|++|+++.+++-..+---...++.|--| - ..+.+.+|+
T Consensus 3 ~p~tvLiTg~r~~----------~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv 72 (387)
T PRK06849 3 TPKTVLITGARAP----------AALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIV 72 (387)
T ss_pred CCCEEEEECCCHH----------HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9877999588607----------899999999878997999848987754200001127986999789899999999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86289889975887026888899887596288287571499899986058899999999878988862000234433333
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHD 158 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~ 158 (1162)
++|+.|-++|+--- ..-++.-..+ | .-.++++..+.+.+.+.-|+..|.+++.++|+|+|++..++
T Consensus 73 ~~e~idl~IP~~ee--v~~~a~~~~~---l-~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~-------- 138 (387)
T PRK06849 73 KRHNIDLLIPTCEE--VFYLSLAKEE---L-SAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLIT-------- 138 (387)
T ss_pred HHHCCCEEEECCCH--HHHHHHHHHH---C-CCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC--------
T ss_conf 98389999977768--9999865764---4-76763765899999986448999999997499999889818--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 2333333344444444333322211111123344444445544489999999998-719969994132678664511169
Q gi|254780439|r 159 RKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALD-EIGLPLIIRPSFTLGGTGGGIAYN 237 (1162)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~-~iGyPvivRps~~lGG~G~~iv~n 237 (1162)
|.++...+.. ..|+|+++||.|+-+|++.....+
T Consensus 139 ---------------------------------------------s~edv~~~~~~~~~~~~ilKPv~~~~~~~v~~~~~ 173 (387)
T PRK06849 139 ---------------------------------------------DPEAIINFDFKTPHTPYVLKPIYSRFVRRVDLTKT 173 (387)
T ss_pred ---------------------------------------------CHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCC
T ss_conf ---------------------------------------------99999865533668978982376665333652159
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99999999989985799827986644997899999997289988999630000001000010134337322898899999
Q gi|254780439|r 238 RSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLM 317 (1162)
Q Consensus 238 ~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~L 317 (1162)
++++. .+..+..++.++.++|.|- |+=...+-+ +|.+...+.-....+.+ .|-++..-+ ..+ .++
T Consensus 174 ~~~l~-----~l~~s~~~p~v~Qe~I~G~-~~ct~al~~-~Gkv~A~~~y~~~~~~~--~g~~v~fe~---v~~---p~i 238 (387)
T PRK06849 174 KAAVL-----KLPISHKSPWIMQEFIPGQ-EYCSYSIVR-SGELRAHSCYKPEFTAG--LGAQIAFQP---INN---PRI 238 (387)
T ss_pred HHHHH-----CCCCCCCCCEEEEEECCCC-EEEEEEEEE-CCEEEEEEEEECCEECC--CCEEEEEEE---CCC---HHH
T ss_conf 77861-----5887667982899871696-758999978-99999999820422058--840578897---588---899
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 99999999871834576468999955898499985044431035788876
Q gi|254780439|r 318 RNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKA 367 (1162)
Q Consensus 318 R~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaska 367 (1162)
++...++++++|+ .|.+..-|.++ .+|++|+||+|||+....-|-+-.
T Consensus 239 ~e~v~~f~~~~~~-tG~isFDFI~~-~dG~~~~IECNPR~tSgi~lf~~~ 286 (387)
T PRK06849 239 EEFVTHFVKELNY-TGQISFDFIQT-ENGDAYPIECNPRTTSGLHLFDDH 286 (387)
T ss_pred HHHHHHHHHHCCC-EEEEEEEEEEC-CCCCEEEEEECCCCCCCEEEECCC
T ss_conf 9999999984785-15899999998-999889998459866644651587
No 77
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.81 E-value=2.6e-15 Score=139.08 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=154.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999976775420505466688899999999879-7899974876501078451310043379999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG-YRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G-i~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
||||||||.= -.--+++|++.. ...|.+.|.-+-++. ...+....+.....+.|.+..+++++|-++
T Consensus 6 kVLviGsGGR-----------EHAia~kl~~S~~v~~v~~aPGN~G~~~-~~~~~~~~i~~~d~~~i~~fa~~~~idLvv 73 (426)
T PRK13789 6 KVLLIGSGGR-----------ESAIAFALRKSNLLSELKVFPGNGGFPD-DELLPADSFSILDKSSVQSFLKSNPFDLIV 73 (426)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 8999898889-----------9999999961989887999889761123-454544433866999999999984999999
Q ss_pred ECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75887026888899887596288287571499899986058899999999878988862000234433333233333334
Q gi|254780439|r 88 PTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERE 167 (1162)
Q Consensus 88 p~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~ 167 (1162)
++=----+.-++-. |.+.||++.|++.++=+.=.++...+++|++.|||+++...
T Consensus 74 vGPE~PL~~Gi~D~------l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~------------------- 128 (426)
T PRK13789 74 VGPEDPLVAGFADW------AAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT------------------- 128 (426)
T ss_pred ECCCHHHHHHHHHH------HHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEE-------------------
T ss_conf 89668886317999------84169916895989950512698999999972999760157-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44444443333222111111233444444455444899999999987199699941326786645111699999999998
Q gi|254780439|r 168 NLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN 247 (1162)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~ 247 (1162)
+++.++|.++.++.++|++|||.---+|.|--|+.+.+|-.+++++
T Consensus 129 ----------------------------------f~~~~~A~~~l~~~~~P~VIKaDGLAaGKGV~V~~~~~eA~~al~~ 174 (426)
T PRK13789 129 ----------------------------------FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKE 174 (426)
T ss_pred ----------------------------------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf ----------------------------------3689999999985799889967876899966953999999999999
Q ss_pred HHHH--C--CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC----CCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 9985--7--9982798664499789999999728998899963000----000100001013433732289889999999
Q gi|254780439|r 248 GLHA--S--PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIEN----LDPMGVHTGDSITVAPALTLTDKEYQLMRN 319 (1162)
Q Consensus 248 al~~--s--~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En----~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~ 319 (1162)
-+.. + ....|+||++|.| .|+-+.++.|++.-+......+| =...|=+||===+++|+.-++++.++++.+
T Consensus 175 i~~~~~fg~ag~~VvIEE~L~G-~E~S~~a~~dG~~~~~lp~aQDhKR~~dgD~GPNTGGMGaysP~p~~~~~~~~~i~~ 253 (426)
T PRK13789 175 IFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKE 253 (426)
T ss_pred HHHHHHHHCCCCEEEEEECCCC-CCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7544233035875999974589-844799997299778688644442133799999999876777786689999999998
Q ss_pred H-HHHHHHHHC-----CCCCCCEEEEEEECCCCEEEEEEECCCCCH
Q ss_conf 9-999998718-----345764689999558984999850444310
Q gi|254780439|r 320 A-AIAVLKEIG-----VESGGANVQFAVNPKNGKMVVIEMNPRVSR 359 (1162)
Q Consensus 320 ~-a~kI~r~lg-----i~vG~~nVQFAv~p~~~~~yvIEvNpR~sR 359 (1162)
. -..+++.+. + .|..-++|.+. ++++-+|||-|-|+--
T Consensus 254 ~ii~pt~~~l~~~g~~y-~GvLy~GlMlt-~~G~pkVlEfN~RfGD 297 (426)
T PRK13789 254 RIFDPMFDDFRKKGHPY-RGLLYAGLMIS-PEGEPKVVEFNCRFGD 297 (426)
T ss_pred HHHHHHHHHHHHCCCCC-EEEEEEEEEEC-CCCCEEEEEEEEECCC
T ss_conf 60489999998589998-86765328992-6997699998853189
No 78
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.80 E-value=1.2e-17 Score=157.57 Aligned_cols=178 Identities=21% Similarity=0.309 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0286789998887098668542112156655565536-971675134444565412554899999999975210132211
Q gi|254780439|r 735 AEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEI 813 (1162)
Q Consensus 735 aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~i-GyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~ 813 (1162)
|+|+....++|.+.|||+|++..+.+.+++.++++++ ||||+|+|++..+|+++.++.++++|..++..+..
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~------- 73 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKW------- 73 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHH-------
T ss_conf 9788999999998797979989988999999999980898389967889998455886063777788888863-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCC--EEEEEEEEEECCCEEEEEEECCCC-----HHCCCCCCEEEEECCCCCC
Q ss_conf 112233333333455777745670220120--100101023079849998520110-----2152457627981686689
Q gi|254780439|r 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDA--MEIDVDALCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPSRSLS 886 (1162)
Q Consensus 814 ~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a--~EiEVDai~Dg~~v~I~gimEHiE-----~aGVHSGDS~~v~PpqsLs 886 (1162)
.+.++++++|+.+. .|+.|-++ |+.++ ++ ++... .+..|.|... .|..|+
T Consensus 74 ----------------~~~~vlvqefI~~~~~~dirv~vi--~~~~~-~~-~~~~~~~~~~~~n~~~g~~~---~~~~l~ 130 (190)
T pfam08443 74 ----------------LKNQILVQEFIAEAGNRDIRCLVV--GGEVV-GA-IHRQSNEGDFRTNLHRGGVA---EPYQLS 130 (190)
T ss_pred ----------------CCCCEEEEEEEECCCCCEEEEEEE--CCCEE-EE-EEEECCCCCCCCCCCCCCEE---CCCCCC
T ss_conf ----------------487377555660478854899996--06336-78-99974667621432468624---587668
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 999999999999998741335762478851288599985244445630456777398899999
Q gi|254780439|r 887 QQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVA 949 (1162)
Q Consensus 887 ~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iA 949 (1162)
++ +.+.+.+++++|+. |.+.|.|...++.+||||+|+ +..+.+++++||+|+++.-
T Consensus 131 ~e----~~e~a~~a~~algl-~~~gVD~~~~~~g~~vlEvN~--~Pg~~~~~~~~g~~i~~~i 186 (190)
T pfam08443 131 QE----EEEIAIKAAQAMGL-DVLGVDIFRSKRGLLVCEVNS--SPGLKGIERTTGINIAIKL 186 (190)
T ss_pred HH----HHHHHHHHHHHHCC-CEEEEEEEEECCCEEEEEECC--CCCCHHHHHHHCCCHHHHH
T ss_conf 89----99999999997389-979999999799679999669--8460478988794999999
No 79
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.80 E-value=3.5e-18 Score=161.73 Aligned_cols=130 Identities=22% Similarity=0.303 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 19969994132678664511169999999999899857998279866449978999999972899889996300000010
Q gi|254780439|r 215 IGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG 294 (1162)
Q Consensus 215 iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G 294 (1162)
++||++|||.++.||+|..++.|.+||.... .++++|+||.| +|+.++++.|..+..++.+..+.+...+
T Consensus 30 ~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~---------~~~liqe~i~G-~e~sv~~l~~~~~~~~~~~~~~~~~~~~ 99 (160)
T pfam02655 30 EEKKYIVKPRDGCGGEGVRFVENGREDEEFI---------ENVIIQEFIEG-EPLSVSLLSDGEKALPLSVNRQLIDNAG 99 (160)
T ss_pred CCCCEEEECCCCCCCCCEEEEECHHHHHHHC---------CCEEEEEEEEC-CEEEEEEEEECCEEEEEEEEEEEECCCC
T ss_conf 5998999808989873189994899986532---------56588747944-4238999998999999998578851478
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEEECCCCEEEEEEECCCCCHH
Q ss_conf 0001013433732289889999999999999871-83457646899995589849998504443103
Q gi|254780439|r 295 VHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEI-GVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 (1162)
Q Consensus 295 iHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~l-gi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRs 360 (1162)
.+...+-.++|+.+-.+ ..+.+.+.++++++ ++ .|.++|||.++ ++..||||+|||+|.|
T Consensus 100 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~~-~G~~~vd~~~~--~~~~~viEiNpR~s~s 160 (160)
T pfam02655 100 SGFVYAGNLTPSRTELK---EELEELAEEVVEALPGL-RGYVGVDLVLT--DNGPYVIEVNPRITTS 160 (160)
T ss_pred CCCCCCCCCEECCCCCH---HHHHHHHHHHHHHHCCC-CCEEEEEEEEE--CCEEEEEEEECCCCCC
T ss_conf 64210376301375888---99999999999984387-56488899999--9908999996887789
No 80
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.80 E-value=4.6e-18 Score=160.82 Aligned_cols=158 Identities=21% Similarity=0.356 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 02867899988870986685421121566555655369716751344445654125548999999999752101322111
Q gi|254780439|r 735 AEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814 (1162)
Q Consensus 735 aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~ 814 (1162)
|.|+.++.++|.+.|||+|++..+.+.+ +++||++|+|.+..||+|+.++.|.++|..+.
T Consensus 1 A~DK~~t~~~l~~~gip~P~~~~~~~~~-------~~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~------------- 60 (160)
T pfam02655 1 ASDKLKTYKALKNAGVPTPETLSAEEPT-------EEEKKYIVKPRDGCGGEGVRFVENGREDEEFI------------- 60 (160)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCHH-------HCCCCEEEECCCCCCCCCEEEEECHHHHHHHC-------------
T ss_conf 9898999999998795999998657823-------55998999808989873189994899986532-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEE-CCCCHHCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 1223333333345577774567022012010010102307984999852-011021524576279816866899999999
Q gi|254780439|r 815 RQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGII-EHIEEAGIHSGDSACSLPSRSLSQQLKDEL 893 (1162)
Q Consensus 815 ~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gim-EHiE~aGVHSGDS~~v~PpqsLs~~~~~~i 893 (1162)
.++++++|+. +.|+.+++++|++++.+.++. ++++.-+.+...+-.+.|...- ..+++
T Consensus 61 -----------------~~~liqe~i~-G~e~sv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~ 119 (160)
T pfam02655 61 -----------------ENVIIQEFIE-GEPLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRTE---LKEEL 119 (160)
T ss_pred -----------------CCEEEEEEEE-CCEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEECCCC---CHHHH
T ss_conf -----------------5658874794-44238999998999999998578851478642103763013758---88999
Q ss_pred HHHHHHHHHHC-CCCCCCEEEEEECCCEEEEEEECCCCCCC
Q ss_conf 99999998741-33576247885128859998524444563
Q gi|254780439|r 894 ISQTKALAGAL-NVIGLINVQYAIKDGKIYILEVNPRASRT 933 (1162)
Q Consensus 894 ~~~t~~ia~~L-~v~G~~NIQfa~kd~~iYVIEvNpRaSRt 933 (1162)
.+.+.+++++| +..|++++||.++++.+||||+|||+|.|
T Consensus 120 ~~~~~~~~~~l~~~~G~~~vd~~~~~~~~~viEiNpR~s~s 160 (160)
T pfam02655 120 EELAEEVVEALPGLRGYVGVDLVLTDNGPYVIEVNPRITTS 160 (160)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCC
T ss_conf 99999999984387564888999999908999996887789
No 81
>pfam02142 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.
Probab=99.79 E-value=4e-19 Score=169.22 Aligned_cols=87 Identities=43% Similarity=0.619 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCC----HHHHHHCCCEEEEEECCCC-CCCCCCHHHHH
Q ss_conf 999999999988989999388899999879815697505687810----7889867985499967899-85231108999
Q gi|254780439|r 1045 RIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPH----IEDAISNRQVHLVINTTEG-KKAIEDSKSLR 1119 (1162)
Q Consensus 1045 ~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~----i~d~i~~~~i~lVINt~~~-~~~~~dg~~iR 1119 (1162)
+++++|+.|.++||+||||+|||+||+++||+++.+.|+++++|+ ++|+|++++||||||||.+ ....+|||.||
T Consensus 1 ~iv~~a~~L~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~~~~~~~~~~i~d~i~~~~IdlVInt~~~~~~~~~dg~~iR 80 (92)
T pfam02142 1 GLVELAKALVELGFKLYATGGTAKFLKEAGIPTEVVNKTGEGRPGGRVQIGDLIKNGEIDLVINTLYPFKATVHDGYAIR 80 (92)
T ss_pred CHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEECCCCHHHH
T ss_conf 96899999998899999883899999955998168634068999984769999982995199983898851125887899
Q ss_pred HHHHHCCCCEEE
Q ss_conf 999970997994
Q gi|254780439|r 1120 RATLIRKIPYYT 1131 (1162)
Q Consensus 1120 r~Ai~~~ip~~T 1131 (1162)
|+|++++|||+|
T Consensus 81 r~a~~~~Ip~~T 92 (92)
T pfam02142 81 RAAENIDIPLPT 92 (92)
T ss_pred HHHHHCCCCCCC
T ss_conf 999926998549
No 82
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.79 E-value=4.5e-17 Score=152.96 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=144.3
Q ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 05889999999987898886200023443333323333333444444443333222111111233444444455444899
Q gi|254780439|r 126 AEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAM 205 (1162)
Q Consensus 126 ~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (1162)
|+|+.+.+++|.+.|+|+|++.++ .+.
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~-----------------------------------------------------~~~ 27 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLA-----------------------------------------------------WSP 27 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEE-----------------------------------------------------CCH
T ss_conf 978899999999879797998998-----------------------------------------------------899
Q ss_pred HHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEEEEEECCCCEE
Q ss_conf 9999999871-99699941326786645111699999999998998579982798664499--78999999972899889
Q gi|254780439|r 206 AVAVQALDEI-GLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLG--WKEYELEMMRDIKGNCI 282 (1162)
Q Consensus 206 ~ea~~~a~~i-GyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g--~kEiE~eVirD~~gn~i 282 (1162)
+++.++++++ ||||+|||+++.+|.|..++++.++|..+++.+...+ .++++|+||.+ .+|+.+-|+.+.---++
T Consensus 28 ~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~~~--~~vlvqefI~~~~~~dirv~vi~~~~~~~~ 105 (190)
T pfam08443 28 EDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKWLK--NQILVQEFIAEAGNRDIRCLVVGGEVVGAI 105 (190)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCEEEEEEECCCEEEEE
T ss_conf 999999998089838996788999845588606377778888886348--737755566047885489999606336789
Q ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHH
Q ss_conf 99630000001000010134337322898899999999999998718345764689999558984999850444310357
Q gi|254780439|r 283 VVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSA 362 (1162)
Q Consensus 283 ~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssa 362 (1162)
.....+.--....|.|.... | .+|+++ +.+.|+++++++|+ |.+.|.|..++ +.+||+|||+ +....
T Consensus 106 ~~~~~~~~~~~n~~~g~~~~--~-~~l~~e----~~e~a~~a~~algl--~~~gVD~~~~~--~g~~vlEvN~--~Pg~~ 172 (190)
T pfam08443 106 HRQSNEGDFRTNLHRGGVAE--P-YQLSQE----EEEIAIKAAQAMGL--DVLGVDIFRSK--RGLLVCEVNS--SPGLK 172 (190)
T ss_pred EEECCCCCCCCCCCCCCEEC--C-CCCCHH----HHHHHHHHHHHHCC--CEEEEEEEEEC--CCEEEEEECC--CCCCH
T ss_conf 99746676214324686245--8-766889----99999999997389--97999999979--9679999669--84604
Q ss_pred HHHHHHCCCHHHHHH
Q ss_conf 888763461476777
Q gi|254780439|r 363 LASKATGFPIAKIAA 377 (1162)
Q Consensus 363 laskatgypia~vaa 377 (1162)
..+++||.++|..-+
T Consensus 173 ~~~~~~g~~i~~~i~ 187 (190)
T pfam08443 173 GIERTTGINIAIKLI 187 (190)
T ss_pred HHHHHHCCCHHHHHH
T ss_conf 789887949999998
No 83
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.78 E-value=3.9e-15 Score=137.66 Aligned_cols=303 Identities=13% Similarity=0.211 Sum_probs=229.7
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 741899727630201476653189999-999996598--06996068652112324586379841678899999987485
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p 694 (1162)
+=||||+|||.- =|| +|+|++... +....--||-|...-. +.-..+....++.+.+.++.++.
T Consensus 4 ~MkVLviGsGGR------------EHAia~kl~~S~~v~~v~~aPGN~G~~~~~~--~~~~~i~~~d~~~i~~fa~~~~i 69 (426)
T PRK13789 4 KLKVLLIGSGGR------------ESAIAFALRKSNLLSELKVFPGNGGFPDDEL--LPADSFSILDKSSVQSFLKSNPF 69 (426)
T ss_pred CCEEEEECCCHH------------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 988999898889------------9999999961989887999889761123454--54443386699999999998499
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 67822799844512466898888875983861275203310286789998887098668542112156655565536971
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyP 774 (1162)
+- |++-=---...-++..|+++|++++|++-++--+-..+....++|.+.+||.+++...++.++|+++.++.++|
T Consensus 70 dL----vvvGPE~PL~~Gi~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P 145 (426)
T PRK13789 70 DL----IVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLP 145 (426)
T ss_pred CE----EEECCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf 99----99896688863179998416991689598995051269899999997299976015736899999999857998
Q ss_pred EEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 6751344445654125548999999999752101322111122333333334557--77745670220120100101023
Q gi|254780439|r 775 LLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLL--GTHPLLFDSYLSDAMEIDVDALC 852 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs--~~~pVlIdkfl~~a~EiEVDai~ 852 (1162)
+.|++.---+|.|--|+.+.+|-.+++.+.+.. ..+ ....|+||+||+ +.|+-+-+++
T Consensus 146 ~VIKaDGLAaGKGV~V~~~~~eA~~al~~i~~~-------------------~~fg~ag~~VvIEE~L~-G~E~S~~a~~ 205 (426)
T PRK13789 146 IVIKADGLAAGKGVTVATEKKMAKRALKEIFKD-------------------KKFGQSGNQVVIEEFME-GQEASIFAIS 205 (426)
T ss_pred EEEECCCCCCCCCEEEECCHHHHHHHHHHHHHH-------------------HHHHCCCCEEEEEECCC-CCCEEEEEEE
T ss_conf 899678768999669539999999999997544-------------------23303587599997458-9844799997
Q ss_pred ECCCEEEEEEECCCCH-----HCCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHHHHCC-----CCCCCEEEEEEC-CCE
Q ss_conf 0798499985201102-----152457627981686689999999999-9999987413-----357624788512-885
Q gi|254780439|r 853 QNDQVIVVGIIEHIEE-----AGIHSGDSACSLPSRSLSQQLKDELIS-QTKALAGALN-----VIGLINVQYAIK-DGK 920 (1162)
Q Consensus 853 Dg~~v~I~gimEHiE~-----aGVHSGDS~~v~PpqsLs~~~~~~i~~-~t~~ia~~L~-----v~G~~NIQfa~k-d~~ 920 (1162)
||+++......+..-. .|=.+|-==+..|..-++++..+++.+ +...+...|. ++|.+-.++.+. +++
T Consensus 206 dG~~~~~lp~aQDhKR~~dgD~GPNTGGMGaysP~p~~~~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~~G~ 285 (426)
T PRK13789 206 DGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGE 285 (426)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
T ss_conf 29977868864444213379999999987677778668999999999860489999998589998867653289926997
Q ss_pred EEEEEECCCCCC--CHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 999852444456--3045677739889999999985972100
Q gi|254780439|r 921 IYILEVNPRASR--TVPFIAKAIGFPVAKVAARIIAGESLDA 960 (1162)
Q Consensus 921 iYVIEvNpRaSR--tvPfvSKatG~pl~~iAt~v~lG~~L~~ 960 (1162)
.||||-|-|+.- |-..+. -..-||.++...+.-|. |+.
T Consensus 286 pkVlEfN~RfGDPE~q~iLp-~L~~dl~~~~~a~~~g~-L~~ 325 (426)
T PRK13789 286 PKVVEFNCRFGDPETQCVLA-MLDGDLLELLYAASTGK-IKV 325 (426)
T ss_pred EEEEEEEEECCCCHHHHHHH-HHHCCHHHHHHHHHHCC-CCC
T ss_conf 69999885318916888988-74154999999997088-664
No 84
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.78 E-value=6.1e-15 Score=136.11 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=259.8
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE-EECCHHHHHHHHHHHCCCC
Q ss_conf 741899727630201476653189999999996598069960686521123245863798-4167889999998748567
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYF-ESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYF-Eplt~E~V~~I~~~E~p~g 696 (1162)
..|||.||||-. |-|+ +-+++.+|.++|-+.--+.. ..-..++|-|. .=+..+.+..++++|+|+-
T Consensus 12 a~kvmLLGSGEL----GKEv-------aIe~QRLG~eVIAVDrY~~A--PAmqVAhrs~Vi~MlD~~al~avv~re~Pd~ 78 (394)
T COG0027 12 ATKVMLLGSGEL----GKEV-------AIEAQRLGVEVIAVDRYANA--PAMQVAHRSYVIDMLDGDALRAVVEREKPDY 78 (394)
T ss_pred CEEEEEECCCCC----CHHH-------HHHHHHCCCEEEEECCCCCC--HHHHHHHHEEEEECCCHHHHHHHHHHHCCCE
T ss_conf 748999638864----4699-------99888638779996376898--0664211113454569999999998658981
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 8227998445124668988888759838612752033102867899988-870986685421121566555655369716
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLL-MELDLNQPRNGISHSVEHARLIACEIGFPL 775 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll-~~l~i~~p~~~~a~s~eea~~~a~~iGyPV 775 (1162)
+++.+ --.+..--..|++.|..++-|- .+..++=||+..+++. ++||+|..+..-+.|++|....+++||||.
T Consensus 79 IVpEi-----EAI~td~L~elE~~G~~VVP~A-rAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPc 152 (394)
T COG0027 79 IVPEI-----EAIATDALVELEEEGYTVVPNA-RATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPC 152 (394)
T ss_pred EEEHH-----HHHHHHHHHHHHHCCCEECCCH-HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 33135-----6664788999986796675532-77773426898999889972999766321355999999999749970
Q ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC
Q ss_conf 75134444565412554899999999975210132211112233333333455777745670220120100101023079
Q gi|254780439|r 776 LIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND 855 (1162)
Q Consensus 776 LVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~ 855 (1162)
+|+|---.+|.|..+|.+.++++..-+.|.... -....-|.++.|+.=-.||-+-.+|--.
T Consensus 153 vvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~-------------------R~~~~RVIVE~fv~fd~EITlLtvr~~~ 213 (394)
T COG0027 153 VVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGG-------------------RGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred ECCCCCCCCCCCCEEECCHHHHHHHHHHHHHCC-------------------CCCCCCEEEEEEECCEEEEEEEEEEEEC
T ss_conf 213320268898214359878899999997547-------------------8888718999873232799999999755
Q ss_pred CEE-EEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCH
Q ss_conf 849-9985201102152457627981686689999999999999998741335762478851288599985244445630
Q gi|254780439|r 856 QVI-VVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTV 934 (1162)
Q Consensus 856 ~v~-I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtv 934 (1162)
.+. -+.-..|.. -.||-...-.||.+|+...++-+.+++++..+|+-.|+|-+++-+++|++|+-|+.||---|=
T Consensus 214 ~~~~Fc~PIGHrq----~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GlFGVElfv~gDeV~FsEVSPRPHDTG 289 (394)
T COG0027 214 GTGSFCAPIGHRQ----EDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVSPRPHDTG 289 (394)
T ss_pred CCCCCCCCCCCCC----CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCCC
T ss_conf 8877677766405----788701036841038999999999999999860586303689997288789852578988872
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH------CCCCCCC-CC-CCC---CCC
Q ss_conf 456777398899999999859721002466667777666873899720388344------5999867-07-756---310
Q gi|254780439|r 935 PFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNK------FPGVDIL-LG-PEM---RST 1003 (1162)
Q Consensus 935 PfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k------~~g~D~~-LG-pEM---kST 1003 (1162)
=.+--+-+.+--.+-+|..+|-.++++.. +.|.+...-.--.+.---+|.- .|++|.. +| ||- |--
T Consensus 290 mVTLiSq~lsEF~LH~RAiLGLPi~~i~~---~~P~AS~vI~~~~~~~~~~f~~l~~AL~~p~t~vRlFGKP~~~~~RRm 366 (394)
T COG0027 290 MVTLISQDLSEFALHVRAILGLPIPEIRQ---ISPAASAVILAQETSQAPTFDGLAEALGVPDTQVRLFGKPEADGGRRL 366 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHCCCCCCEEE---ECCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCEE
T ss_conf 49997065318999999995897642145---254300156033334677522288874589861798068756667504
Q ss_pred EEEEEEECCHHHHHHHHHHHCC
Q ss_conf 1377741999999999999838
Q gi|254780439|r 1004 GEVIGIDQDFPLAFAKSQLGIG 1025 (1162)
Q Consensus 1004 GEVmgig~~~~eA~~Ka~~a~g 1025 (1162)
|=+..-+.+..+|.-||..++.
T Consensus 367 GVaLA~a~~Ve~Are~A~~aa~ 388 (394)
T COG0027 367 GVALATAESVEEARERARKAAS 388 (394)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
T ss_conf 6898427619999999998876
No 85
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.78 E-value=8.7e-15 Score=134.87 Aligned_cols=272 Identities=17% Similarity=0.195 Sum_probs=182.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCEEECCCCCCC-CEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 9999767754205054666888999999998797--89997487650107845131-00433799999999998628988
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNPATIMTDPDLAD-ATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNpaTi~TD~~~aD-~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
||||||||.= -.--+++|++... ++...--||.+-. .+- .+-+.+.+.+.+.+..+++++|-
T Consensus 2 kVLviGsGgR-----------EHAla~~l~~s~~v~~v~~aPGN~g~~~----~a~~~~~i~~~d~~~i~~~a~~~~iDL 66 (415)
T PRK13790 2 NVLVIGAGGR-----------EHALAYKLNQSNLVKQVFVIPGNEAMTP----IAEVHTEISESDHQAILDFAKQQNVDW 66 (415)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECCCHHHHH----HCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 7999887889-----------9999999962989898999789557652----230246768558999999999819999
Q ss_pred EEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99758870268888998875962882875714998999860588999999998789888620002344333332333333
Q gi|254780439|r 86 ILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEE 165 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~ 165 (1162)
++++=-.--..-++-. |.+.||++.|++.++-+.-.+|...+++|++.|||++..+..
T Consensus 67 vvvGPE~PL~~GivD~------l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f---------------- 124 (415)
T PRK13790 67 VVIGPEQPLIDGLADI------LRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEV---------------- 124 (415)
T ss_pred EEECCCHHHHHHHHHH------HHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEE----------------
T ss_conf 9989607866348888------643897598949799515126999999999829797772550----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34444444433332221111112334444444554448999999999871996999413267866451116999999999
Q gi|254780439|r 166 RENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIV 245 (1162)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~ 245 (1162)
++.++|.++.++.++|++||+.---+|.|--|+.+.+|-.+++
T Consensus 125 -------------------------------------~~~~~A~~~l~~~~~p~VIKaDGLAaGKGV~V~~~~~eA~~al 167 (415)
T PRK13790 125 -------------------------------------ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAI 167 (415)
T ss_pred -------------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHH
T ss_conf -------------------------------------8799999998617998899668667899569979999999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEE-E-ECCC----CCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 989985799827986644997899999997289988999-6-3000----000100001013433732289889999999
Q gi|254780439|r 246 ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV-C-SIEN----LDPMGVHTGDSITVAPALTLTDKEYQLMRN 319 (1162)
Q Consensus 246 ~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v-~-~~En----~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~ 319 (1162)
++-+.....+.|+||++|.| .|+-+.++.|++ +.+.. + ..+| =...|-+||===+++|...++++..+++.+
T Consensus 168 ~~i~~~~~~g~VvIEE~L~G-~E~S~~a~~DG~-~~~p~~~~aQDhKR~~dgD~GPNTGGMGaysp~p~~~~~~~~~~~~ 245 (415)
T PRK13790 168 EIMYGDEEEGTVVFETFLEG-EEFSLMTFVNGD-LAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNE 245 (415)
T ss_pred HHHHCCCCCCEEEEEEECCC-CCEEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99855554765999871578-634899997399-7995775432120246899999999875667774469899999998
Q ss_pred H-HHHHH---HH--HCCCCCCCEEEEEEECCCCEEEEEEECCCCCH
Q ss_conf 9-99999---87--18345764689999558984999850444310
Q gi|254780439|r 320 A-AIAVL---KE--IGVESGGANVQFAVNPKNGKMVVIEMNPRVSR 359 (1162)
Q Consensus 320 ~-a~kI~---r~--lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sR 359 (1162)
. -..++ ++ +.+ .|..-++|.+.. + .-+|||-|-|+--
T Consensus 246 ~I~~p~~~~l~~eg~~y-~GvLy~GlMlt~-~-GpkVlEyN~RfGD 288 (415)
T PRK13790 246 TIAQPIAKAMLNEGYQF-FGVLYIGAILTK-D-GPKVIEFNARFGD 288 (415)
T ss_pred HHHHHHHHHHHHCCCCC-EEEEEEEEEEEC-C-CCEEEEEEEECCC
T ss_conf 70899999998559984-899887799868-9-8669998741189
No 86
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.78 E-value=6.8e-15 Score=135.72 Aligned_cols=271 Identities=13% Similarity=0.240 Sum_probs=121.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCEEEEECCCHHHH--HHHHHHHHCCCEEEECC
Q ss_conf 8069960686521123245863798416--7889999998748567822799844512466--89888887598386127
Q gi|254780439|r 653 FETIMINCNPETVSTDYDIADRLYFESL--TEEDILEILRVEQQKGELVGIIVQFGGQTPL--KLSKILEKNQIPILGTQ 728 (1162)
Q Consensus 653 ~~tImIN~NPETVSTDyd~sDrLYFEpl--t~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~--~la~~L~~~gv~ilGts 728 (1162)
.+..+-.-||-|-.- +++---++ ..|.+.+..+.++++- ++ .|=-.|| -++..|++.|++++|.+
T Consensus 26 ~~~~~apgN~G~a~~-----~~~~~~~~~~~~~~lv~fA~~~~idl----~v--VGPE~pL~~GvvD~l~~~Gi~vFGPs 94 (428)
T COG0151 26 LYVYVAPGNPGTALE-----AYLVNIEIDTDHEALVAFAKEKNVDL----VV--VGPEAPLVAGVVDALRAAGIPVFGPT 94 (428)
T ss_pred EEEEEECCCCCCCHH-----HHHCCCCCCCCHHHHHHHHHHCCCCE----EE--ECCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 499993799742113-----44336765558899999999739998----99--89717876446899987799623867
Q ss_pred CCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHC
Q ss_conf 52033102867899988870986685421121566555655369716751344445654125548999999999752101
Q gi|254780439|r 729 PDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGL 808 (1162)
Q Consensus 729 ~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~ 808 (1162)
-++=-+=.++....++|.+-+||.+.....++.++|+.+.++.|.|+.|+|.=--+|.|-.|+.+.+|-.+++.+.+..
T Consensus 95 k~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~- 173 (428)
T COG0151 95 KAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEG- 173 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHH-
T ss_conf 8898877539999999998199964111008989999999972998899345446789859827799999999999740-
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCH-----HCCCCCCEEEEEC
Q ss_conf 322111122333333334557--777456702201201001010230798499985201102-----1524576279816
Q gi|254780439|r 809 VSEEIKRQYPNDKTGQINTLL--GTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEE-----AGIHSGDSACSLP 881 (1162)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~vs--~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~-----aGVHSGDS~~v~P 881 (1162)
..+ ...+|+|+.||+ +-|+-+.+++||++++.....++.-. .|--+|-=-+..|
T Consensus 174 ------------------~~fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp 234 (428)
T COG0151 174 ------------------NAFGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSP 234 (428)
T ss_pred ------------------CCCCCCCCCEEEEECCC-CEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------00147887489985334-61799999976986787853145643348998998888777779
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHH-----CCCCCCCEEEEEECCCEEEEEEECCCCCC--CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8668999999999-999999874-----13357624788512885999852444456--304567773988999999998
Q gi|254780439|r 882 SRSLSQQLKDELI-SQTKALAGA-----LNVIGLINVQYAIKDGKIYILEVNPRASR--TVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 882 pqsLs~~~~~~i~-~~t~~ia~~-----L~v~G~~NIQfa~kd~~iYVIEvNpRaSR--tvPfvSKatG~pl~~iAt~v~ 953 (1162)
+.-++++.++++. ++-....++ ..++|.+-.||.+..+..||||-|-|+.- |-+.+..- .-||+++...++
T Consensus 235 ~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDPEtq~vL~~l-~sdl~~~~~a~~ 313 (428)
T COG0151 235 APFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVVLPLL-ESDLVELLLAAV 313 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 8879989999999999999999999718981478876789828996799985666883577778760-260999999997
Q ss_pred CC
Q ss_conf 59
Q gi|254780439|r 954 AG 955 (1162)
Q Consensus 954 lG 955 (1162)
-|
T Consensus 314 ~g 315 (428)
T COG0151 314 DG 315 (428)
T ss_pred HC
T ss_conf 18
No 87
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.77 E-value=8.4e-19 Score=166.69 Aligned_cols=87 Identities=41% Similarity=0.536 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEE-EEEECCCCCCCCHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHH
Q ss_conf 999999999988989999388899999879815-697505687810788986798549996789--98523110899999
Q gi|254780439|r 1045 RIVPIIQNFKKLGFKIMATEGTARFLESHGLET-QKINKVLEGRPHIEDAISNRQVHLVINTTE--GKKAIEDSKSLRRA 1121 (1162)
Q Consensus 1045 ~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~-~~v~k~~e~~~~i~d~i~~~~i~lVINt~~--~~~~~~dg~~iRr~ 1121 (1162)
+++++|++|.++||+||||+|||+||+++||++ +.+.|++||+||++|+|++++||||||||. ++++.+|||.|||+
T Consensus 1 ~~~~~ak~l~~lGf~l~AT~GTa~~L~~~Gi~v~~l~~ki~~g~~~i~~~i~~~~IdlVInt~~~~~~~~~~d~~~iRr~ 80 (90)
T smart00851 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRA 80 (90)
T ss_pred CHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHCCCCHHHH
T ss_conf 96899999998899899812589999975997104302443561048998197887999984687632365358889999
Q ss_pred HHHCCCCEEE
Q ss_conf 9970997994
Q gi|254780439|r 1122 TLIRKIPYYT 1131 (1162)
Q Consensus 1122 Ai~~~ip~~T 1131 (1162)
|++++|||+|
T Consensus 81 a~~~~Ip~~T 90 (90)
T smart00851 81 AENIDIPGAT 90 (90)
T ss_pred HHCCCCCCCC
T ss_conf 8808988709
No 88
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.77 E-value=8.6e-15 Score=134.93 Aligned_cols=300 Identities=14% Similarity=0.248 Sum_probs=234.8
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCC--CCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 1899727630201476653189999-99999659--80699606865211232458637984167889999998748567
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAG--FETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G--~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
||||+|||.- =|| +|+|++.. .+..+..-||-|..- +...-.....++.+.+.++.++.+-
T Consensus 2 kVLviGsGgR------------EHAia~kl~~s~~v~~v~~~PGN~G~~~~----~~~~~i~~~d~~~l~~~a~~~~idl 65 (424)
T PRK00885 2 KVLVIGSGGR------------EHALAWKLAQSPLVEKVYVAPGNAGTALE----AENVAIDVTDIEALVAFAKEEGIDL 65 (424)
T ss_pred EEEEECCCHH------------HHHHHHHHHHCCCCCEEEEECCCHHHHHC----CEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 7999888889------------99999999739798989992897588741----7365128579999999999849999
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 82279984451246689888887598386127520331028678999888709866854211215665556553697167
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLL 776 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVL 776 (1162)
||+-=-.-...-++..|.++|++++|++-++--+=..+....++|.+.+||.+.+..+++.++|+++.++.++|+.
T Consensus 66 ----viiGPE~pL~~Gi~D~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~V 141 (424)
T PRK00885 66 ----TVVGPEAPLVAGIVDAFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQGAPIV 141 (424)
T ss_pred ----EEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEE
T ss_conf ----9989667887357999950699468949789887663799999999829898754886899999999985799889
Q ss_pred EECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 5134444565412554899999999975210132211112233333333455777--74567022012010010102307
Q gi|254780439|r 777 IRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGT--HPLLFDSYLSDAMEIDVDALCQN 854 (1162)
Q Consensus 777 VRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~--~pVlIdkfl~~a~EiEVDai~Dg 854 (1162)
|++.=--+|.|--|+.+.+|-.+++.+.+.. ..+++ .+|+||+||. +.|+-+-+++||
T Consensus 142 IKaDGLAaGKGV~V~~~~~ea~~al~~i~~~-------------------~~fg~ag~~VvIEE~L~-G~E~S~~a~~DG 201 (424)
T PRK00885 142 VKADGLAAGKGVVVAMTLEEAEAAVDDMLAG-------------------NKFGDAGARVVIEEFLD-GEEASFFALVDG 201 (424)
T ss_pred EECCCCCCCCCEEEECCHHHHHHHHHHHHCC-------------------CCCCCCCCEEEEEECCC-CCEEEEEEEECC
T ss_conf 9617656777517637899999999998503-------------------32345687289997058-831799999789
Q ss_pred CCEEEEEEECCCCH-----HCCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHHHH-----CCCCCCCEEEEEECCCEEEE
Q ss_conf 98499985201102-----152457627981686689999999999-99999874-----13357624788512885999
Q gi|254780439|r 855 DQVIVVGIIEHIEE-----AGIHSGDSACSLPSRSLSQQLKDELIS-QTKALAGA-----LNVIGLINVQYAIKDGKIYI 923 (1162)
Q Consensus 855 ~~v~I~gimEHiE~-----aGVHSGDS~~v~PpqsLs~~~~~~i~~-~t~~ia~~-----L~v~G~~NIQfa~kd~~iYV 923 (1162)
++.......+..-. .|-.+|-==+..|+.-++++..+++.+ +......+ +.++|.+-+++.+.++..||
T Consensus 202 ~~~~~lp~aqDhKR~~dgD~GPNTGGMGa~sP~p~~~~~~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~~GpkV 281 (424)
T PRK00885 202 ENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITKDGPKV 281 (424)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEE
T ss_conf 97264702114750568999988998856678867999999999998799999999857984799987799986797558
Q ss_pred EEECCCCCC--CHHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 852444456--30456777398899999999859721002
Q gi|254780439|r 924 LEVNPRASR--TVPFIAKAIGFPVAKVAARIIAGESLDAS 961 (1162)
Q Consensus 924 IEvNpRaSR--tvPfvSKatG~pl~~iAt~v~lG~~L~~~ 961 (1162)
||-|-|+.- |-..+.. ..-+|.++...++-|+ |.+.
T Consensus 282 lEyN~RfGDPE~qvllp~-L~~dl~~l~~~~~~g~-L~~~ 319 (424)
T PRK00885 282 IEFNCRFGDPETQVVLPR-LKSDLVELLLAAAEGK-LDEV 319 (424)
T ss_pred EEEECCCCCHHHHHHHHH-CCCCHHHHHHHHHCCC-CCCC
T ss_conf 986313488588899875-2361999999875398-5545
No 89
>PRK06849 hypothetical protein; Provisional
Probab=99.76 E-value=3.2e-15 Score=138.32 Aligned_cols=283 Identities=14% Similarity=0.197 Sum_probs=209.1
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE-------CCHHHHHHHH
Q ss_conf 774189972763020147665318999999999659806996068652112324586379841-------6788999999
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES-------LTEEDILEIL 689 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp-------lt~E~V~~I~ 689 (1162)
+.|.|||-|+-- =-+.|-+|.|.++|+++|+.-.++=..|-=-.-.++-|-=| -..+.+++|+
T Consensus 3 ~p~tvLiTg~r~----------~~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv 72 (387)
T PRK06849 3 TPKTVLITGARA----------PAALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIV 72 (387)
T ss_pred CCCEEEEECCCH----------HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 987799958860----------7899999999878997999848987754200001127986999789899999999999
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87485678227998445124668988888--7598386127520331028678999888709866854211215665556
Q gi|254780439|r 690 RVEQQKGELVGIIVQFGGQTPLKLSKILE--KNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLI 767 (1162)
Q Consensus 690 ~~E~p~g~~~~vi~q~gGqt~~~la~~L~--~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~ 767 (1162)
++|+.+ +++-..-.. .-+|.... ...++++..+.+.....-|+..|.+++.++|++.|+...+++.+++..+
T Consensus 73 ~~e~id-----l~IP~~eev-~~~a~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~ 146 (387)
T PRK06849 73 KRHNID-----LLIPTCEEV-FYLSLAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINF 146 (387)
T ss_pred HHHCCC-----EEEECCCHH-HHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf 983899-----999777689-99986576447676376589999998644899999999749999988981899999865
Q ss_pred HHH-CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 553-6971675134444565412554899999999975210132211112233333333455777745670220120100
Q gi|254780439|r 768 ACE-IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEI 846 (1162)
Q Consensus 768 a~~-iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~Ei 846 (1162)
... .++|++++|-|.-+|+.....-++++++. -.++.++|.++.+||. ++|+
T Consensus 147 ~~~~~~~~~ilKPv~~~~~~~v~~~~~~~~l~~--------------------------l~~s~~~p~v~Qe~I~-G~~~ 199 (387)
T PRK06849 147 DFKTPHTPYVLKPIYSRFVRRVDLTKTKAAVLK--------------------------LPISHKSPWIMQEFIP-GQEY 199 (387)
T ss_pred HHCCCCCCEEECCCCCCCCCEEEECCCHHHHHC--------------------------CCCCCCCCEEEEEECC-CCEE
T ss_conf 533668978982376665333652159778615--------------------------8876679828998716-9675
Q ss_pred EEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEEEE
Q ss_conf 10102307984999852011021524576279816866899999999999999987413357624788512-88599985
Q gi|254780439|r 847 DVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGKIYILE 925 (1162)
Q Consensus 847 EVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~iYVIE 925 (1162)
=..++++.+.+......+. ....+.+.+++. .++.. ++|++.+.++++++|+.|.+..-|++. |+++|+||
T Consensus 200 ct~al~~~Gkv~A~~~y~~----~~~~~~g~~v~f-e~v~~---p~i~e~v~~f~~~~~~tG~isFDFI~~~dG~~~~IE 271 (387)
T PRK06849 200 CSYSIVRSGELRAHSCYKP----EFTAGLGAQIAF-QPINN---PRIEEFVTHFVKELNYTGQISFDFIQTENGDAYPIE 271 (387)
T ss_pred EEEEEEECCEEEEEEEEEC----CEECCCCEEEEE-EECCC---HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEE
T ss_conf 8999978999999998204----220588405788-97588---899999999998478515899999998999889998
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 2444456304567773988999999998597
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGE 956 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~ 956 (1162)
||||+.-.+-+.+...+ .+.+++|.
T Consensus 272 CNPR~tSgi~lf~~~~~------~a~a~~~~ 296 (387)
T PRK06849 272 CNPRTTSGLHLFDDHPG------ILPAYLNE 296 (387)
T ss_pred ECCCCCCCEEEECCCHH------HHHHHHCC
T ss_conf 45986664465158755------89986356
No 90
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.76 E-value=2e-14 Score=132.01 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=136.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE---CCCCCEEECCCCCCCC-EEECCCCHHHHHHHHHHHCCC
Q ss_conf 999976775420505466688899999999879789997---4876501078451310-043379999999999862898
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILV---NSNPATIMTDPDLADA-TYTEPITPEVVAKIIEKERPD 84 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlV---NsNpaTi~TD~~~aD~-vY~ePlt~e~v~~Ii~~E~pD 84 (1162)
||||||||.= -.--+++|++.+ +++.+ |-||.+.. .+.. +-+.+.+.+.|.+..+++++|
T Consensus 4 kVLViGsGGR-----------EHAla~kl~~s~-~~~~~~~g~gn~g~~~----~~~~~~~~~~~d~~~i~~~a~~~~id 67 (435)
T PRK06395 4 KVMLVGSGGR-----------EDAIARAIKRSG-AILFSVIGHENPSIKK----LSKKYLFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred EEEEECCCHH-----------HHHHHHHHHCCC-CCEEEEECCCCHHHHH----HCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 7999887889-----------999999985598-8449998999678776----23234656856999999999984999
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8997588702688889988759628828757149989998605889999999987898-886200023443333323333
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLA-TPKSILANATDIKEHDRKLHE 163 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip-~~~s~~~~~~~~~~~~~~~~~ 163 (1162)
=++++=----+.-++-. |.+.|+++.|++.++=+.=.+|...+++|++.||| +++.
T Consensus 68 LvvvGPE~pL~~Gi~D~------l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~----------------- 124 (435)
T PRK06395 68 IVFVGPDPVLATPLVNN------LLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF----------------- 124 (435)
T ss_pred EEEECCCHHHHCCHHHH------HHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCC-----------------
T ss_conf 99989767886614559------9768994668428873263279889999998099856645-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC----HH
Q ss_conf 33344444444333322211111123344444445544489999999998719969994132678664511169----99
Q gi|254780439|r 164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYN----RS 239 (1162)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n----~e 239 (1162)
..+.|..+|..+..+.++|++|||.---+|.|-.|+.+ .+
T Consensus 125 ------------------------------------~~~~~~~ea~~~~~~~~~piVIKadGLAaGKGV~V~~~~~~~~~ 168 (435)
T PRK06395 125 ------------------------------------NACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVD 168 (435)
T ss_pred ------------------------------------CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHH
T ss_conf ------------------------------------32399999999999709984897342257896489558577899
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEE-ECCCC----CCCCCCCCEEEEECCC----CCCC
Q ss_conf 9999999899857998279866449978999999972899889996-30000----0010000101343373----2289
Q gi|254780439|r 240 EFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVC-SIENL----DPMGVHTGDSITVAPA----LTLT 310 (1162)
Q Consensus 240 eL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~-~~En~----dp~GiHtGDSi~vaP~----qTL~ 310 (1162)
|..+++.+-+.. .+.|+||++|.| .|+-+-++.|++ +.+... ..+|= -..|-+||-==+++|+ ..++
T Consensus 169 ea~~~~~~~~~~--~~~vvIEE~L~G-~E~S~~a~~dG~-~~~~lp~aqDhKR~~dgD~GPNTGGMGaysp~~~~~p~l~ 244 (435)
T PRK06395 169 EAIRYAIEILDR--DGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLS 244 (435)
T ss_pred HHHHHHHHHHHC--CCEEEEEEEEEC-CEEEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999988734--885999999844-168999997699-5585873012533447999999998745688888874327
Q ss_pred HHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEEEECCCCEEEEEEECCCCCHH
Q ss_conf 8899999999999998718-----3457646899995589849998504443103
Q gi|254780439|r 311 DKEYQLMRNAAIAVLKEIG-----VESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 (1162)
Q Consensus 311 d~~~q~LR~~a~kI~r~lg-----i~vG~~nVQFAv~p~~~~~yvIEvNpR~sRs 360 (1162)
++..+..+..-..+++.+. + .|..-+.+.+. ++.-||||-|-|+---
T Consensus 245 ~~~~e~~~~Ii~pti~~l~~eg~~y-~GvLy~GlMit--~~gpkVlEyN~RfGDP 296 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKDENNPF-KGIMYGQFMDT--PNGVKVIEINARFADP 296 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEEEEEE--CCCCEEEEEEECCCCC
T ss_conf 7899999999999999999649970-89987789850--8996489986203880
No 91
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.76 E-value=1e-14 Score=134.40 Aligned_cols=297 Identities=11% Similarity=0.201 Sum_probs=226.4
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 1899727630201476653189999-999996598--0699606865211232458637984167889999998748567
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
||||+|||.- =|| +|+|++... +....--||-|....- ...-..+.+.+.+.+.++.++.+-
T Consensus 2 kVLviGsGgR------------EHAla~~l~~s~~v~~v~~aPGN~g~~~~a~---~~~~i~~~d~~~i~~~a~~~~iDL 66 (415)
T PRK13790 2 NVLVIGAGGR------------EHALAYKLNQSNLVKQVFVIPGNEAMTPIAE---VHTEISESDHQAILDFAKQQNVDW 66 (415)
T ss_pred EEEEECCCHH------------HHHHHHHHHHCCCCCEEEEECCCHHHHHHCC---CCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 7999887889------------9999999962989898999789557652230---246768558999999999819999
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 82279984451246689888887598386127520331028678999888709866854211215665556553697167
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLL 776 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVL 776 (1162)
|++-=-.-...-++..|+++|++++|++-++-.+-..+....++|.+.+||.+.+..+++.++|+++.++.++|+.
T Consensus 67 ----vvvGPE~PL~~GivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~V 142 (415)
T PRK13790 67 ----VVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVV 142 (415)
T ss_pred ----EEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEE
T ss_conf ----9989607866348888643897598949799515126999999999829797772550879999999861799889
Q ss_pred EECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 51344445654125548999999999752101322111122333333334557777456702201201001010230798
Q gi|254780439|r 777 IRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQ 856 (1162)
Q Consensus 777 VRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~ 856 (1162)
|++.---+|.|--|+.+.+|-.+.+.+.+.. .. ...|+|++||+ +.|+-+-+++||+.
T Consensus 143 IKaDGLAaGKGV~V~~~~~eA~~al~~i~~~-------------------~~--~g~VvIEE~L~-G~E~S~~a~~DG~~ 200 (415)
T PRK13790 143 VKKDGLAAGKGVIIADTIEAARSAIEIMYGD-------------------EE--EGTVVFETFLE-GEEFSLMTFVNGDL 200 (415)
T ss_pred EECCCCCCCCCEEEECCHHHHHHHHHHHHCC-------------------CC--CCEEEEEEECC-CCCEEEEEEECCCE
T ss_conf 9668667899569979999999999998555-------------------54--76599987157-86348999973997
Q ss_pred EEEE-EEECCCCH-----HCCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHH-----HHCCCCCCCEEEEEECCCEEEEE
Q ss_conf 4999-85201102-----152457627981686689999999999-999998-----74133576247885128859998
Q gi|254780439|r 857 VIVV-GIIEHIEE-----AGIHSGDSACSLPSRSLSQQLKDELIS-QTKALA-----GALNVIGLINVQYAIKDGKIYIL 924 (1162)
Q Consensus 857 v~I~-gimEHiE~-----aGVHSGDS~~v~PpqsLs~~~~~~i~~-~t~~ia-----~~L~v~G~~NIQfa~kd~~iYVI 924 (1162)
++-. ...+..-. .|-.+|-==+..|..-++++..+++.+ +...+. ..+.++|.+-.++.+.++..|||
T Consensus 201 ~~p~~~~aQDhKR~~dgD~GPNTGGMGaysp~p~~~~~~~~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~~GpkVl 280 (415)
T PRK13790 201 AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVI 280 (415)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEE
T ss_conf 99577543212024689999999987566777446989999999870899999998559984899887799868986699
Q ss_pred EECCCCCC--CHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 52444456--30456777398899999999859721
Q gi|254780439|r 925 EVNPRASR--TVPFIAKAIGFPVAKVAARIIAGESL 958 (1162)
Q Consensus 925 EvNpRaSR--tvPfvSKatG~pl~~iAt~v~lG~~L 958 (1162)
|-|-|+.- +-..+. -..-+|.++...+.-|+.+
T Consensus 281 EyN~RfGDPE~q~iLp-~L~~Dl~~~~~~~~~g~~~ 315 (415)
T PRK13790 281 EFNARFGDPEAQVLLS-RMESDLMQHIIDLDEGKRT 315 (415)
T ss_pred EEEEECCCCHHHHHHH-HCCCHHHHHHHHHHCCCCC
T ss_conf 9874118922888987-6055199999999759987
No 92
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=99.74 E-value=1e-14 Score=134.29 Aligned_cols=295 Identities=21% Similarity=0.341 Sum_probs=239.7
Q ss_pred CCCCCCCHHHHHH---HHHHHHC--------CCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC------
Q ss_conf 1476653189999---9999965--------9806996068652112324586379841678899999987485------
Q gi|254780439|r 632 GQGIEFDYCCCHA---SFSLKEA--------GFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQ------ 694 (1162)
Q Consensus 632 GqgiEFDy~~v~a---~~aLr~~--------G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p------ 694 (1162)
|.|-|-+=||+-| .++|++. ||+.+-|--++.+. |-.+|+. =++|+..++...+...+-
T Consensus 8 G~S~EhEiSL~Sa~~v~~aL~~~~~FIF~deg~~v~~~~~~~~g~---w~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR01205 8 GKSAEHEISLVSAQAVLKALRSLLEFIFLDEGYDVYPVDIDKQGS---WVFSDAK-TEALVYKDLLQKLLEQGGPINLSS 83 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCC---EECCCCC-CCCCCCCCHHHHHHHCCCCEECCC
T ss_conf 876505675899999999865208766531664899986226773---3003456-555211100467763589740146
Q ss_pred --------------------CCCCCEEEEECCCH-HHH--HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCC
Q ss_conf --------------------67822799844512-466--8988888759838612752033102867899988870986
Q gi|254780439|r 695 --------------------KGELVGIIVQFGGQ-TPL--KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLN 751 (1162)
Q Consensus 695 --------------------~g~~~~vi~q~gGq-t~~--~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~ 751 (1162)
.-.+.-|+.-+=|- ..- .+.-=|+=.|+|..|....+==.+=|+.....+++.+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~D~vF~~LHG~~~GEDGtiQGlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~~Glp 163 (375)
T TIGR01205 84 LAQVSLLGESFLLEAESAEALEEIDVVFPVLHGPPYGEDGTIQGLLELLGIPYTGSGVLASALSMDKLLTKLLLKSLGLP 163 (375)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67410035566666445302047988998121856685552899999707870374789999874289999999875797
Q ss_pred CCCCCCC--CCHHHHH-------HHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6854211--2156655-------565536971675134444565412554899999999975210132211112233333
Q gi|254780439|r 752 QPRNGIS--HSVEHAR-------LIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKT 822 (1162)
Q Consensus 752 ~p~~~~a--~s~eea~-------~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~ 822 (1162)
+|+|... .+....- ..++..|||++|+|+--.+=-|+.+|.+++||+.++..|+.
T Consensus 164 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~~~~eL~~a~~~Af~---------------- 227 (375)
T TIGR01205 164 TPDYAVLRRKERSSEDEAECENVAVLEKLGFPVFVKPAREGSSVGISKVKSEEELEAALDEAFK---------------- 227 (375)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHC----------------
T ss_conf 4470467504544561346899999983689789973467775778984677899999998615----------------
Q ss_pred CCCCCCCCCCCEEEEEE---CCCCEEEEEEEEEECCCEEEEEEECCCCHHCC----------CCCC-EEEEECCC-CCCH
Q ss_conf 33345577774567022---01201001010230798499985201102152----------4576-27981686-6899
Q gi|254780439|r 823 GQINTLLGTHPLLFDSY---LSDAMEIDVDALCQNDQVIVVGIIEHIEEAGI----------HSGD-SACSLPSR-SLSQ 887 (1162)
Q Consensus 823 ~~~~~vs~~~pVlIdkf---l~~a~EiEVDai~Dg~~v~I~gimEHiE~aGV----------HSGD-S~~v~Ppq-sLs~ 887 (1162)
-++.|+||+| +. ++|++|=++-+++..-+.-+.+-++..|+ -+|+ +-.+.|.. .|++
T Consensus 228 -------~d~~v~vE~~~~~i~-grEl~v~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~pa~~~L~~ 299 (375)
T TIGR01205 228 -------YDERVIVEEFKQRIK-GRELEVSILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVIPAPAGLDE 299 (375)
T ss_pred -------CCCEEEEEECCCCCC-CCEEEEEEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEECCCCCCCH
T ss_conf -------596599981114789-852689887079743245406753567676000021142778873265156567888
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-C-CEEEEEEECCCCCC----CHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 999999999999987413357624788512-8-85999852444456----3045677739889999999985
Q gi|254780439|r 888 QLKDELISQTKALAGALNVIGLINVQYAIK-D-GKIYILEVNPRASR----TVPFIAKAIGFPVAKVAARIIA 954 (1162)
Q Consensus 888 ~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d-~~iYVIEvNpRaSR----tvPfvSKatG~pl~~iAt~v~l 954 (1162)
+..++|++.+.|+-++|+.+|+.=|-|.+. + +++|++|+||==.= -+|=..++.|+.+.++..+++-
T Consensus 300 ~~~~~i~~~a~~ay~~~~~~G~~R~DFf~~~~~G~~yLnEiNT~PGmT~~Sl~P~~~~~~G~~f~~Lv~~~~~ 372 (375)
T TIGR01205 300 ELEEKIKELALKAYKALGCRGLARVDFFLDKETGEIYLNEINTIPGMTAISLFPKAAAAAGLEFEQLVERILE 372 (375)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999999984088744899899872888699998768888720126999999718887899999998
No 93
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.74 E-value=7e-14 Score=127.69 Aligned_cols=363 Identities=19% Similarity=0.225 Sum_probs=246.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCEEECCCCCCCCEEEC--CC--CHHHHHHHHHHHC
Q ss_conf 999976775420505466688899999999879--78999748765010784513100433--79--9999999998628
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSNPATIMTDPDLADATYTE--PI--TPEVVAKIIEKER 82 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsNpaTi~TD~~~aD~vY~e--Pl--t~e~v~~Ii~~E~ 82 (1162)
||||||||.= -.-..++|.+.+ .++..-.-||-|-. ..|++ ++ ..+.|.+..++++
T Consensus 2 kVLviGsGGR-----------EHAiA~kla~s~~v~~~~~apgN~G~a~-------~~~~~~~~~~~~~~~lv~fA~~~~ 63 (428)
T COG0151 2 KVLVIGSGGR-----------EHALAWKLAQSPLVLYVYVAPGNPGTAL-------EAYLVNIEIDTDHEALVAFAKEKN 63 (428)
T ss_pred EEEEECCCCH-----------HHHHHHHHHCCCCEEEEEEECCCCCCCH-------HHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 4999868816-----------9999999840876249999379974211-------344336765558899999999739
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
+|-++++==---..-++-. |++.||++.|++.++=+.=.++...+++|.+.|||++..
T Consensus 64 idl~vVGPE~pL~~GvvD~------l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y---------------- 121 (428)
T COG0151 64 VDLVVVGPEAPLVAGVVDA------LRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY---------------- 121 (428)
T ss_pred CCEEEECCCHHHHHHHHHH------HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC----------------
T ss_conf 9989989717876446899------987799623867889887753999999999819996411----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 33334444444433332221111112334444444554448999999999871996999413267866451116999999
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFL 242 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~ 242 (1162)
+.+++.++|.++.++.|.|++|||.---+|.|-.|+.+.+|-.
T Consensus 122 -------------------------------------~~f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~ 164 (428)
T COG0151 122 -------------------------------------EVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAE 164 (428)
T ss_pred -------------------------------------EECCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEECCCHHHHH
T ss_conf -------------------------------------1008989999999972998899345446789859827799999
Q ss_pred HHHHHHHHH----CCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCC-----CCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 999989985----799827986644997899999997289988999630000-----00100001013433732289889
Q gi|254780439|r 243 EIVENGLHA----SPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENL-----DPMGVHTGDSITVAPALTLTDKE 313 (1162)
Q Consensus 243 ~~~~~al~~----s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~-----dp~GiHtGDSi~vaP~qTL~d~~ 313 (1162)
+++.+-+.. ++..+|+||++|.| .|+-+.++.|++ |++..-...+- .-.|-+||-==+.+|+.-+|++.
T Consensus 165 ~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~ 242 (428)
T COG0151 165 AAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEV 242 (428)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCC-EEEEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 999999740001478874899853346-179999997698-678785314564334899899888877777988799899
Q ss_pred HHHHH-HHHHHHHHH-----HCCCCCCCEEEEEEECCCCEEEEEEECCCCCHH--HHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 99999-999999987-----183457646899995589849998504443103--5788876346147677764134461
Q gi|254780439|r 314 YQLMR-NAAIAVLKE-----IGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS--SALASKATGFPIAKIAAKLAVGYTL 385 (1162)
Q Consensus 314 ~q~LR-~~a~kI~r~-----lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRs--salaskatgypia~vaakl~~G~~L 385 (1162)
+|+.. +.-...++. ..+ +|..-.||.+.++. -+|||-|-|+--- .+....-. -+++.+...++-|. |
T Consensus 243 ~~~~~~~Iv~ptv~gm~~EG~~f-~GvLy~glMlt~~G--PkViEfN~RFGDPEtq~vL~~l~-sdl~~~~~a~~~g~-L 317 (428)
T COG0151 243 VERAVEEIVEPTVEGMAKEGYPF-RGVLYAGLMLTADG--PKVIEFNARFGDPETQVVLPLLE-SDLVELLLAAVDGK-L 317 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEEECCCC--CEEEEEECCCCCHHHHHHHHHCC-CCHHHHHHHHHHCC-C
T ss_conf 99999999999999999718981-47887678982899--67999856668835777787602-60999999997187-5
Q ss_pred CCCCCCCCC-----------CCCCCCCCCCCCEEEEEEEECCC----CCCCCCCCCCCCCCCCCC----HHHHCCCCHHH
Q ss_conf 013577567-----------77766657767768985442012----114776666677310010----02222676899
Q gi|254780439|r 386 DELGNDITG-----------GKTPASFEPSIDYIVTKIPRFTF----EKFPGSDVTLTTSMKSVG----EVMAIGRTFAE 446 (1162)
Q Consensus 386 ~ei~~~~~~-----------~~~~a~~Ep~ldyv~vK~p~f~f----~kf~~~~~~Lgt~MkS~G----Evm~iGr~f~e 446 (1162)
++..-..+- ...+...++ .....-.+.-.. -=+.++...-+.+..+.| .|.|.|.|++|
T Consensus 318 ~~~~~~~~~~~a~v~vvlA~~GYP~~~~k--G~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~e 395 (428)
T COG0151 318 DEVEILFWDKGAAVGVVLAAEGYPGDPEK--GDVITGDEEAEEEGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEE 395 (428)
T ss_pred CCCCHHHCCCCCEEEEEEECCCCCCCCCC--CCEEECCHHHCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCHHH
T ss_conf 56442221578569999905888988889--9887647564266838999667215795599648858999965899999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99989975037
Q gi|254780439|r 447 SLQKALRGLET 457 (1162)
Q Consensus 447 A~~KAlrsle~ 457 (1162)
|-.+|-+.++.
T Consensus 396 A~~~ay~~~~~ 406 (428)
T COG0151 396 AQEKAYEALEK 406 (428)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999963
No 94
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.73 E-value=7.2e-14 Score=127.63 Aligned_cols=276 Identities=17% Similarity=0.215 Sum_probs=198.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
||.|++.+|. .||+.+-..|+++.|+++.++++.-.++..+...+. +|..-- ....+|+|+|
T Consensus 2 ki~iLs~~~~--------~yst~RL~eaa~~rGh~v~vidp~~~~~~i~~~~~~-v~~~g~---------~L~~~Davip 63 (300)
T PRK10446 2 KIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASS-IHYKGR---------KLPHFDAVIP 63 (300)
T ss_pred EEEEEECCCC--------CCHHHHHHHHHHHCCCEEEEEEHHHCEEEECCCCCE-EEECCE---------ECCCCCEEEE
T ss_conf 7999936997--------607999999999879959996148918982489864-998980---------8687888998
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58870268888998875962882875714998999860588999999998789888620002344333332333333344
Q gi|254780439|r 89 TTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEEREN 168 (1162)
Q Consensus 89 ~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~ 168 (1162)
-.|--..+.=+.-|. .|+.+|+.++ -++++|.++.|+-.-.++|.+.|+|+|+++++.
T Consensus 64 R~g~~~t~~~~~vLr---~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~------------------ 121 (300)
T PRK10446 64 RIGTAITFYGTAALR---QFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAH------------------ 121 (300)
T ss_pred CCCCCCCHHHHHHHH---HHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC------------------
T ss_conf 267774558999999---9998899186-489999985769999999987597999889836------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44444433332221111112334444444554448999999999871-99699941326786645111699999999998
Q gi|254780439|r 169 LKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEI-GLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN 247 (1162)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~i-GyPvivRps~~lGG~G~~iv~n~eeL~~~~~~ 247 (1162)
+.+++.++.+++ ||||++||.++-+|+|.-++++.+++...++.
T Consensus 122 -----------------------------------~~~~~~~~i~~~gg~PvViKpl~Gs~G~GV~l~e~~~~~~~i~~~ 166 (300)
T PRK10446 122 -----------------------------------SPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDA 166 (300)
T ss_pred -----------------------------------CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHH
T ss_conf -----------------------------------999999999980899789996789886036997378999999998
Q ss_pred HHHHCCCCCEEEEEECCCCE--EEEEEEEEECCCCEEEEEECCC---CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99857998279866449978--9999999728998899963000---000100001013433732289889999999999
Q gi|254780439|r 248 GLHASPTTEVLIEESVLGWK--EYELEMMRDIKGNCIVVCSIEN---LDPMGVHTGDSITVAPALTLTDKEYQLMRNAAI 322 (1162)
Q Consensus 248 al~~s~~~~vlIeksl~g~k--EiE~eVirD~~gn~i~v~~~En---~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~ 322 (1162)
-... ..++++.|||...+ .+-+-|+. |.++-...+.. -=---+|.|=..... .|++++ ++.|.
T Consensus 167 ~~~~--~~~~~iQeyI~~~~g~D~Rv~vvg---g~vvaam~R~~~~g~~rtN~~~Gg~~~~~---~l~~e~----~~la~ 234 (300)
T PRK10446 167 FRGL--NAHILVQEYIKEAQGCDIRCLVVG---DEVVAAIERRAKEGDFRSNLHRGGAASVA---SITPQE----REIAI 234 (300)
T ss_pred HHHC--CCCEEEEEECCCCCCCCEEEEEEC---CEEHHHEEEECCCCCEEEEEECCCEEEEC---CCCHHH----HHHHH
T ss_conf 8622--873775220255579867999999---86244389973788347777039776532---899999----99999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 9998718345764689999558984999850444310357888763461476777
Q gi|254780439|r 323 AVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAA 377 (1162)
Q Consensus 323 kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaa 377 (1162)
+.++.+|. ..|-|-..-+ ++.+||+|||. |=.--=..++||..+|..-.
T Consensus 235 ~a~~~lgl--~~~GVDii~~--~~g~~v~EVN~--~Pg~~gi~~~tgvdiA~~Ii 283 (300)
T PRK10446 235 KAARTMAL--DVAGVDILRA--NRGPLVMEVNA--SPGLEGIEKTTGIDIAGKMI 283 (300)
T ss_pred HHHHHHCC--CEEEEEEEEE--CCCCEEEEECC--CHHHHHHHHHHCCCHHHHHH
T ss_conf 99998699--6899999882--89988999938--74278898875989899999
No 95
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.70 E-value=8.7e-14 Score=126.95 Aligned_cols=294 Identities=14% Similarity=0.191 Sum_probs=219.1
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCCCCE--EEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 41899727630201476653189999-99999659806--9960686521123245863798416788999999874856
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAGFET--IMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G~~t--ImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
-||||+|||.- | || +|.|++.+... +.-|-||-|...- ...+-..+..++.|.+.+..++.+
T Consensus 3 MkVLViGsGGR------E------HAla~kl~~s~~~~~~~~g~gn~g~~~~~---~~~~~~~~~d~~~i~~~a~~~~id 67 (435)
T PRK06395 3 MKVMLVGSGGR------E------DAIARAIKRSGAILFSVIGHENPSIKKLS---KKYLFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred CEEEEECCCHH------H------HHHHHHHHCCCCCEEEEECCCCHHHHHHC---CCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 77999887889------9------99999985598844999899967877623---234656856999999999984999
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 78227998445124668988888759838612752033102867899988870986-68542112156655565536971
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLN-QPRNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~-~p~~~~a~s~eea~~~a~~iGyP 774 (1162)
- |++-=---...-++..|.++|++++|++-.+--+--++....++|.+.+|| .+++..+.+.++|..+..+.++|
T Consensus 68 L----vvvGPE~pL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~p 143 (435)
T PRK06395 68 I----VFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKD 143 (435)
T ss_pred E----EEECCCHHHHCCHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9----998976788661455997689946684288732632798899999980998566453239999999999970998
Q ss_pred EEEECCCCCCCCCCEEECCH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 67513444456541255489----99999999752101322111122333333334557777456702201201001010
Q gi|254780439|r 775 LLIRPSYVLGGRAMQIVYSE----NMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDA 850 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~Iv~~~----~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDa 850 (1162)
+.|++.=--+|.|--|+.++ ++..+++.+.+ .....|+||+||. +.|+-+-+
T Consensus 144 iVIKadGLAaGKGV~V~~~~~~~~~ea~~~~~~~~-----------------------~~~~~vvIEE~L~-G~E~S~~a 199 (435)
T PRK06395 144 VAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL-----------------------DRDGVVLIEKKMT-GEEFSLQA 199 (435)
T ss_pred EEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHH-----------------------HCCCEEEEEEEEE-CCEEEEEE
T ss_conf 48973422578964895585778999999999887-----------------------3488599999984-41689999
Q ss_pred EEECCCEEEEEEECCCC-----HHCCCCCCEEEEECC----CCCCHHHHHHHHHHHHHHHHHCC-----CCCCCEEEEEE
Q ss_conf 23079849998520110-----215245762798168----66899999999999999987413-----35762478851
Q gi|254780439|r 851 LCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPS----RSLSQQLKDELISQTKALAGALN-----VIGLINVQYAI 916 (1162)
Q Consensus 851 i~Dg~~v~I~gimEHiE-----~aGVHSGDS~~v~Pp----qsLs~~~~~~i~~~t~~ia~~L~-----v~G~~NIQfa~ 916 (1162)
++||.++......+..- ..|-.+|-==+..|+ .-+++...++++++.....++|. ++|.+-+.+.+
T Consensus 200 ~~dG~~~~~lp~aqDhKR~~dgD~GPNTGGMGaysp~~~~~p~l~~~~~e~~~~Ii~pti~~l~~eg~~y~GvLy~GlMi 279 (435)
T PRK06395 200 FSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMD 279 (435)
T ss_pred EECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 97699558587301253344799999999874568888887432778999999999999999996499708998778985
Q ss_pred CCCEEEEEEECCCCCC--CHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 2885999852444456--304567773988999999998597
Q gi|254780439|r 917 KDGKIYILEVNPRASR--TVPFIAKAIGFPVAKVAARIIAGE 956 (1162)
Q Consensus 917 kd~~iYVIEvNpRaSR--tvPfvSKatG~pl~~iAt~v~lG~ 956 (1162)
.++..||||-|-|+.- |-..+.. ..-||.++...++-|+
T Consensus 280 t~~gpkVlEyN~RfGDPE~QviLp~-L~~Dl~~ll~a~~~g~ 320 (435)
T PRK06395 280 TPNGVKVIEINARFADPEGINVLYL-LKSDFVETLHQIYSGN 320 (435)
T ss_pred ECCCCEEEEEEECCCCCHHHHHHHH-HCCCHHHHHHHHHCCC
T ss_conf 0899648998620388068888776-0052999999997088
No 96
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.70 E-value=8.9e-13 Score=118.95 Aligned_cols=275 Identities=20% Similarity=0.267 Sum_probs=162.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEE--CCCCCEEECCCCC-CCCEEECCCCHHHHHHHHHHHCC
Q ss_conf 999976775420505466688899999999879--789997--4876501078451-31004337999999999986289
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILV--NSNPATIMTDPDL-ADATYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlV--NsNpaTi~TD~~~-aD~vY~ePlt~e~v~~Ii~~E~p 83 (1162)
||||||||.= -.--+++|++.. -++... |-||-+-..-... +..+-+.+...+.+.+..+++++
T Consensus 2 kVLVIGsGGR-----------EHAla~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~~~~d~~~i~~fa~~~~I 70 (485)
T PRK05784 2 KVLLVGDGAR-----------EHAIAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIGNPTSPGEVVKAAEEVSP 70 (485)
T ss_pred EEEEECCCHH-----------HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCC
T ss_conf 8999898889-----------99999999609898989997389875256776425872120487799999999998199
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898-88620002344333332333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLA-TPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip-~~~s~~~~~~~~~~~~~~~~ 162 (1162)
|=++.+== .+|- .-|.+ .|++.||++.|++.++-+.=.++...+++|++.||| ++..
T Consensus 71 DLvvVGPE--~PL~--~Gi~D--~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~---------------- 128 (485)
T PRK05784 71 DLVVIGPE--EPLF--AGVAD--ALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRY---------------- 128 (485)
T ss_pred CEEEECCH--HHHH--HHHHH--HHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC----------------
T ss_conf 99998973--8876--12589--99737990789688994141278899999997289966401----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH--
Q ss_conf 333344444444333322211111123344444445544489999999998719969994132678664511169999--
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE-- 240 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~ee-- 240 (1162)
..+++.++|.++.+..+ |++|||.---+|.|-.|+.+..+
T Consensus 129 -------------------------------------~~f~~~~~A~~~l~~~~-piVIKaDGLAaGKGV~V~~~~~~~~ 170 (485)
T PRK05784 129 -------------------------------------GVFKDVEEAYSFAEYGG-SVAIKPARQAGGKGVKVIYDLQAYL 170 (485)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHCC-CEEEECCHHCCCCCEEEECCCHHHH
T ss_conf -------------------------------------21389999999986489-8499211330678518822727777
Q ss_pred ---HHHHH----HHHHH---HC--CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC-----CCCCCCCCCEEEEE
Q ss_conf ---99999----98998---57--9982798664499789999999728998899963000-----00010000101343
Q gi|254780439|r 241 ---FLEIV----ENGLH---AS--PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIEN-----LDPMGVHTGDSITV 303 (1162)
Q Consensus 241 ---L~~~~----~~al~---~s--~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En-----~dp~GiHtGDSi~v 303 (1162)
..+++ .+.+. .+ ....|+||++|.| .|+-+-++.|++ +.+....... =...|-+||===++
T Consensus 171 ~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~G-~E~S~~a~~DG~-~~~~lp~aQDhKR~~dgD~GPNTGGMGAy 248 (485)
T PRK05784 171 SNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVDG-VEYTVQVLTDGE-SVFPLPPVQDNPHAYEYGIGPETGGMGSV 248 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CEEEEEEEEECC-EEEECCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 7789999999999999876543246870999964468-179999998299-69989222057655689999899987006
Q ss_pred CCC----CCCCHHHHHHHHHHHHHHH----HH--HCCCCCCCEEEEEEECCCCEEEEEEECCCCCH
Q ss_conf 373----2289889999999999999----87--18345764689999558984999850444310
Q gi|254780439|r 304 APA----LTLTDKEYQLMRNAAIAVL----KE--IGVESGGANVQFAVNPKNGKMVVIEMNPRVSR 359 (1162)
Q Consensus 304 aP~----qTL~d~~~q~LR~~a~kI~----r~--lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sR 359 (1162)
+|+ ..+++++++...+.-...+ +. +.+ .|..-+.+.+. +..-+|||-|-|+--
T Consensus 249 sP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y-~GvLY~GlMit--~~GPkVlEfN~RfGD 311 (485)
T PRK05784 249 SGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERY-VGVLSGQMMLT--ALGPTVIEYYSRLGD 311 (485)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEEEEC--CCCCEEEEEECCCCC
T ss_conf 7876677544799999998748999999986169972-78887678861--898489999688788
No 97
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.69 E-value=3.5e-13 Score=122.20 Aligned_cols=352 Identities=18% Similarity=0.218 Sum_probs=238.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCC-HHHHHHHHHHHCCCEE
Q ss_conf 699997677542050546668889999999987978999748765010784513100433799-9999999986289889
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPIT-PEVVAKIIEKERPDAI 86 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt-~e~v~~Ii~~E~pDaI 86 (1162)
+.|-|||.|-. |-=-+.|-+.+|++++...|||..- ....||+...-.-+ .+.+.+.. +++|.|
T Consensus 2 ~tvgIlGGGQL-----------grMm~~aa~~lG~~v~vLdp~~~~P--A~~va~~~i~~~~dD~~al~ela--~~~DVi 66 (375)
T COG0026 2 KTVGILGGGQL-----------GRMMALAAARLGIKVIVLDPDADAP--AAQVADRVIVAAYDDPEALRELA--AKCDVI 66 (375)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCCC--HHHCCCCEEECCCCCHHHHHHHH--HHCCEE
T ss_conf 76999768699-----------9999999986497799956999996--33414315415778889999998--629889
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97588702688889988759628828757149989998605889999999987898886200023443333323333333
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEER 166 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~ 166 (1162)
---|=-=. ......|... --+=++++++..+-||-.=+++++++|+|+|+.+.+
T Consensus 67 T~EfE~V~-~~aL~~l~~~--------~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v----------------- 120 (375)
T COG0026 67 TYEFENVP-AEALEKLAAS--------VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVV----------------- 120 (375)
T ss_pred EEEECCCC-HHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-----------------
T ss_conf 98514698-8999999961--------676999899887766899999999769999982785-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf 4444444433332221111112334444444554448999999999871996999413267-866451116999999999
Q gi|254780439|r 167 ENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTL-GGTGGGIAYNRSEFLEIV 245 (1162)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~l-GG~G~~iv~n~eeL~~~~ 245 (1162)
++.+++.+++.++|||.++|...++ -|+|-.++.+.+++....
T Consensus 121 ------------------------------------~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~ 164 (375)
T COG0026 121 ------------------------------------DSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRA 164 (375)
T ss_pred ------------------------------------CCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCHHHH
T ss_conf ------------------------------------79889999999759956998322656688708940701023567
Q ss_pred HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98998579982798664499789999999728998899963000000100001013433732289889999999999999
Q gi|254780439|r 246 ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325 (1162)
Q Consensus 246 ~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~ 325 (1162)
...... ...++|+|+.=-+|+-+-+.|+.+|++.+.=-.||+-.-||= ..+++|+ .+++...+..++.|.||+
T Consensus 165 ~~~~~~---~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl---~~siaPa-~i~~~~~~~A~~~a~~i~ 237 (375)
T COG0026 165 AGLAEG---GVPVLEEFVPFEREISVIVARSNDGEVAFYPVAENVHRNGIL---RTSIAPA-RIPDDLQAQAEEMAKKIA 237 (375)
T ss_pred HHHHCC---CCEEEEEECCCCEEEEEEEEECCCCCEEEECCCCEEEECCEE---EEEEECC-CCCHHHHHHHHHHHHHHH
T ss_conf 665136---863688603566489999998589978980662101336789---9997237-689899999999999999
Q ss_pred HHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87183457646899995589849998504443103578887634614767776413446101357756777766657767
Q gi|254780439|r 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSI 405 (1162)
Q Consensus 326 r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~l 405 (1162)
.+|+| ||..-|+|=+. .+++.+|=|+-||+--|--+---+--..=-.---+-.+|+.|.+. ....++.+-..|
T Consensus 238 ~~L~y-vGVl~vE~Fv~-~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~-----~~~~p~vMvNlL 310 (375)
T COG0026 238 EELDY-VGVLAVEFFVT-PDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGST-----TLLSPSVMVNLL 310 (375)
T ss_pred HHCCC-EEEEEEEEEEE-CCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCC-----CCCCCEEEEEEC
T ss_conf 97594-57899999997-898489861368987866512331212489999999829999975-----424760799951
Q ss_pred CE--------EEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
Q ss_conf 76--------8985442012114776666677310010022226768999998997
Q gi|254780439|r 406 DY--------IVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALR 453 (1162)
Q Consensus 406 dy--------v~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlr 453 (1162)
-. -+.+.|-|...-+...+.+-|-.| |-|--++.+.++..+++-+
T Consensus 311 G~~~~~~~~~~~l~~p~~~lH~YGK~e~R~gRKm---GHvn~~~~~~~~~~~~~~~ 363 (375)
T COG0026 311 GDDVPPDDVKAVLALPGAHLHWYGKAEARPGRKM---GHVNVLGSDSDELEQLAAL 363 (375)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEE---EEEEEECCCHHHHHHHHHH
T ss_conf 7777613468897499978997057657799733---5688615978999999876
No 98
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=99.68 E-value=5.6e-17 Score=152.22 Aligned_cols=97 Identities=37% Similarity=0.540 Sum_probs=92.2
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECC--------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004337--------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEP--------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~eP--------lt~e~v~~Ii 78 (1162)
+|||||+|+|+| +.+++++|||+|+++|+||+||+++|+|.++||++|++| |+.+.|.+|.
T Consensus 1 i~kvLIanrGei-----------A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia 69 (109)
T pfam00289 1 IKKVLVANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIA 69 (109)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 948999888799-----------999999999869979999633441522566505765347998321113799999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCHHH----HCCEEECCCHHHH
Q ss_conf 86289889975887026888899887596288----2875714998999
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVLDR----YGVEMIGAKPETI 123 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~----~~v~~lG~~~~~I 123 (1162)
++++.|||||||| +|+|+.-|.+ .|+.|+|+++++|
T Consensus 70 ~~~~~~aihpGyG---------flsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 70 EKEGADAIHPGYG---------FLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred HHHCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 9818896877976---------233599999999988898999583549
No 99
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.65 E-value=5.6e-12 Score=112.65 Aligned_cols=322 Identities=19% Similarity=0.291 Sum_probs=233.8
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHCCCCC
Q ss_conf 41899727630201476653189999999996598069960686521123245863798416-78899999987485678
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESL-TEEDILEILRVEQQKGE 697 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEpl-t~E~V~~I~~~E~p~g~ 697 (1162)
+.|-|||+|-. .-..+.+-+.+|++++..-.||+. ...-.+|+..--.- ..+.+.+..++-
T Consensus 2 ~tvgIlGGGQL-----------grMm~~aa~~lG~~v~vLdp~~~~--PA~~va~~~i~~~~dD~~al~ela~~~----- 63 (375)
T COG0026 2 KTVGILGGGQL-----------GRMMALAAARLGIKVIVLDPDADA--PAAQVADRVIVAAYDDPEALRELAAKC----- 63 (375)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCC--CHHHCCCCEEECCCCCHHHHHHHHHHC-----
T ss_conf 76999768699-----------999999998649779995699999--633414315415778889999998629-----
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 22799844512466898888875983861275203310286789998887098668542112156655565536971675
Q gi|254780439|r 698 LVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLI 777 (1162)
Q Consensus 698 ~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLV 777 (1162)
.||+-===..+......|.+. ++ +=++++++..+.||..=.++|+++|++.|+|..+.+.+|...++.++|||.++
T Consensus 64 --DViT~EfE~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~Vl 139 (375)
T COG0026 64 --DVITYEFENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVL 139 (375)
T ss_pred --CEEEEEECCCCHHHHHHHHHH-CC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEE
T ss_conf --889985146988999999961-67-69998998877668999999997699999827857988999999975995699
Q ss_pred ECCCCC-CCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE-CC
Q ss_conf 134444-5654125548999999999752101322111122333333334557777456702201201001010230-79
Q gi|254780439|r 778 RPSYVL-GGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ-ND 855 (1162)
Q Consensus 778 RPSyVL-GG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D-g~ 855 (1162)
+-.... -|+|-.++.+..++........ ....| ++|+|+.=-+|+-|-+.|+ ++
T Consensus 140 Ktr~gGYDGkGQ~~i~~~~~~~~~~~~~~-----------------------~~~~~-vlE~fV~F~~EiSvi~aR~~~G 195 (375)
T COG0026 140 KTRRGGYDGKGQWRIRSDADLELRAAGLA-----------------------EGGVP-VLEEFVPFEREISVIVARSNDG 195 (375)
T ss_pred EECCCCCCCCCEEEEECCCCCHHHHHHHH-----------------------CCCCE-EEEEECCCCEEEEEEEEECCCC
T ss_conf 83226566887089407010235676651-----------------------36863-6886035664899999985899
Q ss_pred CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEEEECCCCCCCH
Q ss_conf 8499985201102152457627981686689999999999999998741335762478851-288599985244445630
Q gi|254780439|r 856 QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTV 934 (1162)
Q Consensus 856 ~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVIEvNpRaSRtv 934 (1162)
++..+=.-|++-.-||- ...+.|+ .+++...++.++++.+|+.+|+++|.+-|+|-+ .|++++|=|.-||---|=
T Consensus 196 ~~~~yP~~eN~h~~gIl---~~siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSG 271 (375)
T COG0026 196 EVAFYPVAENVHRNGIL---RTSIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSG 271 (375)
T ss_pred CEEEECCCCEEEECCEE---EEEEECC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 78980662101336789---9997237-6898999999999999999759457899999997898489861368987866
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEE---CCCHHHCCCCCC
Q ss_conf 456777398899999999859721002466667777666873899720---388344599986
Q gi|254780439|r 935 PFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKES---VFPFNKFPGVDI 994 (1162)
Q Consensus 935 PfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~p---vFsF~k~~g~D~ 994 (1162)
-++--+.-..=-+--.|.++|.+|.+... ..| ....+..+...+ +..+.+.|++-.
T Consensus 272 H~T~~gc~~SQFEqHlRAv~glPLg~~~~---~~p-~vMvNlLG~~~~~~~~~~~l~~p~~~l 330 (375)
T COG0026 272 HWTIDGCETSQFEQHLRAVLGLPLGSTTL---LSP-SVMVNLLGDDVPPDDVKAVLALPGAHL 330 (375)
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCCCCCCC---CCC-EEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 51233121248999999982999997542---476-079995177776134688974999789
No 100
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1e-13 Score=126.32 Aligned_cols=282 Identities=20% Similarity=0.314 Sum_probs=206.4
Q ss_pred CHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCEEE-CCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHH
Q ss_conf 0546668---889999999987978999748765010-784513100433799999999998628988997588702688
Q gi|254780439|r 22 QACEFDY---SGTQACKALKEEGYRIILVNSNPATIM-TDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALN 97 (1162)
Q Consensus 22 qa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaTi~-TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GGqtaln 97 (1162)
..+|.+. |+.+..++|+..|+.+.-+..+++-.. .++.... ...+++|-+.|..=|-.+-
T Consensus 12 ~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~vvfp~lhG~~gE- 75 (317)
T COG1181 12 RSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTK---------------RVLQKADVVFPVLHGPYGE- 75 (317)
T ss_pred CCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHH---------------HHHCCCCEEEEECCCCCCC-
T ss_conf 537306999658999998761487158873246632785031012---------------2202698778715588888-
Q ss_pred HHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88998875962882875714998999860588999999998789888620002344333332333333344444444333
Q gi|254780439|r 98 TALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEE 177 (1162)
Q Consensus 98 l~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1162)
+-.-.|.|+.+|+.+.|.++.+=-.+-|+...+...+..|+|+++....+..+
T Consensus 76 ---Dg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~------------------------ 128 (317)
T COG1181 76 ---DGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDE------------------------ 128 (317)
T ss_pred ---CCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCC------------------------
T ss_conf ---70699999970998760764453323509999889986786512356753345------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 32221111112334444444554448999999999871996999413267866451116999999999989985799827
Q gi|254780439|r 178 LDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEV 257 (1162)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~v 257 (1162)
| +-....+.....|||++|+|+-.+.=-|+-.|++.+|++.+.+.++... .++
T Consensus 129 ---------------------~----~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d--~~v 181 (317)
T COG1181 129 ---------------------Y----SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYD--RDV 181 (317)
T ss_pred ---------------------C----HHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEECCHHHHHHHHHHHC--CCC
T ss_conf ---------------------2----0478887741468878998587311367998835043699999999847--851
Q ss_pred EEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC----------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9866449978999999972899889996300000010----------000101343373228988999999999999987
Q gi|254780439|r 258 LIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG----------VHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE 327 (1162)
Q Consensus 258 lIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G----------iHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~ 327 (1162)
++|+++. -+|||+.++.+.. ..... ....+.|-| +++|.+....|+ -|+|+.++.+++.|.++.++
T Consensus 182 l~e~~~~-~rei~v~vl~~~~-~~~~l-~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~a 257 (317)
T COG1181 182 LREQGIT-GREIEVGVLGNDY-EEQAL-PLGEIPPKGEEFYDYEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKA 257 (317)
T ss_pred EECCCCC-CCEEEEEECCCCC-CCEEC-CCCEEECCCCEEEEEECCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 2003776-6558986358865-52444-7616816998698600014578984353788-99988999999999999986
Q ss_pred HCCCCCCCEEEEEEECCCCEEEEEEECCCCC--HHH--HHHHHHHCCCHHHHHHH
Q ss_conf 1834576468999955898499985044431--035--78887634614767776
Q gi|254780439|r 328 IGVESGGANVQFAVNPKNGKMVVIEMNPRVS--RSS--ALASKATGFPIAKIAAK 378 (1162)
Q Consensus 328 lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~s--Rss--alaskatgypia~vaak 378 (1162)
||-. |.|-|-|-++...+++|++|+||.-- .+| |.+.++.|.+...+..+
T Consensus 258 lg~~-g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~ 311 (317)
T COG1181 258 LGCL-GLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLR 311 (317)
T ss_pred CCCC-CEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 0888-75888799987899899998708998765353767798759988999999
No 101
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.63 E-value=3.4e-13 Score=122.24 Aligned_cols=276 Identities=19% Similarity=0.228 Sum_probs=198.6
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 18997276302014766531899999999965980699606865211232458637984167889999998748567822
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELV 699 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~ 699 (1162)
|+.||+..|. .|++-+-..+.++.|++.-+++..--++..+-+.+ .+|+.--.+. ..+
T Consensus 2 ki~iLs~~~~--------~yst~RL~eaa~~rGh~v~vidp~~~~~~i~~~~~-~v~~~g~~L~---------~~D---- 59 (300)
T PRK10446 2 KIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPLSCYMNINPAAS-SIHYKGRKLP---------HFD---- 59 (300)
T ss_pred EEEEEECCCC--------CCHHHHHHHHHHHCCCEEEEEEHHHCEEEECCCCC-EEEECCEECC---------CCC----
T ss_conf 7999936997--------60799999999987995999614891898248986-4998980868---------788----
Q ss_pred EEEEECCCH---HHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC-CCCE
Q ss_conf 799844512---466898888875983861275203310286789998887098668542112156655565536-9716
Q gi|254780439|r 700 GIIVQFGGQ---TPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPL 775 (1162)
Q Consensus 700 ~vi~q~gGq---t~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~i-GyPV 775 (1162)
.|+.-+|-- -...+-+.|+..|++++ -++++|..+.|+-.-..+|.+.|+|+|+...+.+.+++.++.+++ ||||
T Consensus 60 avipR~g~~~t~~~~~vLr~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~Pv 138 (300)
T PRK10446 60 AVIPRIGTAITFYGTAALRQFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPL 138 (300)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCE
T ss_conf 89982677745589999999998899186-48999998576999999998759799988983699999999998089978
Q ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC
Q ss_conf 75134444565412554899999999975210132211112233333333455777745670220120100101023079
Q gi|254780439|r 776 LIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND 855 (1162)
Q Consensus 776 LVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~ 855 (1162)
+++|.+.-.|+++..+.+.++++..++.- . ....++++.+|+....-.|+-++-=|+
T Consensus 139 ViKpl~Gs~G~GV~l~e~~~~~~~i~~~~-~----------------------~~~~~~~iQeyI~~~~g~D~Rv~vvgg 195 (300)
T PRK10446 139 VVKLVEGTQGIGVVLAETRQAAESVIDAF-R----------------------GLNAHILVQEYIKEAQGCDIRCLVVGD 195 (300)
T ss_pred EEEECCCCCCCCEEEEECHHHHHHHHHHH-H----------------------HCCCCEEEEEECCCCCCCCEEEEEECC
T ss_conf 99967898860369973789999999988-6----------------------228737752202555798679999998
Q ss_pred CEEEEEEECCCCH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCC
Q ss_conf 8499985201102-----15245762798168668999999999999999874133576247885128859998524444
Q gi|254780439|r 856 QVIVVGIIEHIEE-----AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRA 930 (1162)
Q Consensus 856 ~v~I~gimEHiE~-----aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRa 930 (1162)
.++ +-|.+.-+ +-+|.|-..... .++++.. +.+.+.++.++. +.+-|-++..++..||+|+| +
T Consensus 196 ~vv--aam~R~~~~g~~rtN~~~Gg~~~~~---~l~~e~~----~la~~a~~~lgl-~~~GVDii~~~~g~~v~EVN--~ 263 (300)
T PRK10446 196 EVV--AAIERRAKEGDFRSNLHRGGAASVA---SITPQER----EIAIKAARTMAL-DVAGVDILRANRGPLVMEVN--A 263 (300)
T ss_pred EEH--HHEEEECCCCCEEEEEECCCEEEEC---CCCHHHH----HHHHHHHHHHCC-CEEEEEEEEECCCCEEEEEC--C
T ss_conf 624--4389973788347777039776532---8999999----999999998699-68999998828998899993--8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 56304567773988999999998
Q gi|254780439|r 931 SRTVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 931 SRtvPfvSKatG~pl~~iAt~v~ 953 (1162)
|-..-=+.++||++++..-..-.
T Consensus 264 ~Pg~~gi~~~tgvdiA~~Ii~~i 286 (300)
T PRK10446 264 SPGLEGIEKTTGIDIAGKMIRWI 286 (300)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 74278898875989899999999
No 102
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.63 E-value=6.8e-12 Score=111.99 Aligned_cols=367 Identities=14% Similarity=0.219 Sum_probs=243.1
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCCC--CEEEE--ECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHHHC
Q ss_conf 1899727630201476653189999-999996598--06996--0686521123245-8637984167889999998748
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAGF--ETIMI--NCNPETVSTDYDI-ADRLYFESLTEEDILEILRVEQ 693 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G~--~tImI--N~NPETVSTDyd~-sDrLYFEplt~E~V~~I~~~E~ 693 (1162)
||||+|||.- =|| +|+|++.-- +.... |-||-|...--.. +..+-..+..++.+.+.++.++
T Consensus 2 kVLVIGsGGR------------EHAla~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~~~~d~~~i~~fa~~~~ 69 (485)
T PRK05784 2 KVLLVGDGAR------------EHAIAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIGNPTSPGEVVKAAEEVS 69 (485)
T ss_pred EEEEECCCHH------------HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCC
T ss_conf 8999898889------------9999999960989898999738987525677642587212048779999999999819
Q ss_pred CCCCCCEEEEECCCHHHH--HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 567822799844512466--8988888759838612752033102867899988870986-6854211215665556553
Q gi|254780439|r 694 QKGELVGIIVQFGGQTPL--KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLN-QPRNGISHSVEHARLIACE 770 (1162)
Q Consensus 694 p~g~~~~vi~q~gGqt~~--~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~-~p~~~~a~s~eea~~~a~~ 770 (1162)
.+- ||+ |--.|| -++..|+++|++++|++-++--+=..+..-.++|.+.+|| .+.+...++.++|+++.+.
T Consensus 70 IDL----vvV--GPE~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~~ 143 (485)
T PRK05784 70 PDL----VVI--GPEEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAEY 143 (485)
T ss_pred CCE----EEE--CCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999----998--97388761258999737990789688994141278899999997289966401213899999999864
Q ss_pred CCCCEEEECCCCCCCCCCEEECCHH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 6971675134444565412554899-----99999997521013221111223333333345577774567022012010
Q gi|254780439|r 771 IGFPLLIRPSYVLGGRAMQIVYSEN-----MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAME 845 (1162)
Q Consensus 771 iGyPVLVRPSyVLGG~~M~Iv~~~~-----eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~E 845 (1162)
.+ |+.|++.=--+|.|-.|+.+.. +.++.+.+++...... ...--.....|+||+||+ +.|
T Consensus 144 ~~-piVIKaDGLAaGKGV~V~~~~~~~~~~~~~e~~~~~~~~~~~~------------~~~fg~ag~~VvIEEfL~-G~E 209 (485)
T PRK05784 144 GG-SVAIKPARQAGGKGVKVIYDLQAYLSNEKDEVLTKGAEEIKEQ------------LASYRDVEEKILVEEKVD-GVE 209 (485)
T ss_pred CC-CEEEECCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHCCCCCEEEEEECCC-CCE
T ss_conf 89-8499211330678518822727777778999999999999987------------654324687099996446-817
Q ss_pred EEEEEEEECCCEEEEEEECCCCH-----HCCCCCCEEEEECC----CCCCHHHHHHHHHHH----HHHHHH--CCCCCCC
Q ss_conf 01010230798499985201102-----15245762798168----668999999999999----999874--1335762
Q gi|254780439|r 846 IDVDALCQNDQVIVVGIIEHIEE-----AGIHSGDSACSLPS----RSLSQQLKDELISQT----KALAGA--LNVIGLI 910 (1162)
Q Consensus 846 iEVDai~Dg~~v~I~gimEHiE~-----aGVHSGDS~~v~Pp----qsLs~~~~~~i~~~t----~~ia~~--L~v~G~~ 910 (1162)
+-+-++|||+++......++.-. .|-.+|-==+..|+ .-++++.++++.++. ..+.++ +.++|.+
T Consensus 210 ~S~~a~~DG~~~~~lp~aQDhKR~~dgD~GPNTGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y~GvL 289 (485)
T PRK05784 210 YTVQVLTDGESVFPLPPVQDNPHAYEYGIGPETGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERYVGVL 289 (485)
T ss_pred EEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999982996998922205765568999989998700678766775447999999987489999999861699727888
Q ss_pred EEEEEECCCEEEEEEECCCCCC-CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE-EE-CCCHH
Q ss_conf 4788512885999852444456-304567773988999999998597210024666677776668738997-20-38834
Q gi|254780439|r 911 NVQYAIKDGKIYILEVNPRASR-TVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVK-ES-VFPFN 987 (1162)
Q Consensus 911 NIQfa~kd~~iYVIEvNpRaSR-tvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK-~p-vFsF~ 987 (1162)
-..+.+.++..||||-|-|+.- ..-.+---..-||.++...++-|+ |........ +. .-++|= ++ =.|..
T Consensus 290 Y~GlMit~~GPkVlEfN~RfGDPEtQ~iLp~L~sDl~~l~~a~~~g~-L~~~~~~~~--~~----~av~VVlAs~GYP~~ 362 (485)
T PRK05784 290 SGQMMLTALGPTVIEYYSRLGDPEALNALYLYEGDFYELFELAATGK-LHKAERRFK--EE----PTVVKAIAPLGYPLR 362 (485)
T ss_pred EEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCC-CCCCCEEEC--CC----CEEEEEEECCCCCCC
T ss_conf 76788618984899996887883388899874263999999998199-887870476--89----569999946999997
Q ss_pred H--CCC--------------CCCC-CCCC-----CCCCE----EEEEEECCHHHHHHHHHHHCC
Q ss_conf 4--599--------------9867-0775-----63101----377741999999999999838
Q gi|254780439|r 988 K--FPG--------------VDIL-LGPE-----MRSTG----EVIGIDQDFPLAFAKSQLGIG 1025 (1162)
Q Consensus 988 k--~~g--------------~D~~-LGpE-----MkSTG----EVmgig~~~~eA~~Ka~~a~g 1025 (1162)
. -.| +... =|++ ..++| .|.+.|.|+.+|..||+.+..
T Consensus 363 ~~~~~g~~i~~~~~~~~~~~~~vfhagt~~~~g~l~t~GGRVL~v~a~g~tl~eAr~~aY~~i~ 426 (485)
T PRK05784 363 RDLATGRRIWVDWDSIRREGCLVYFGSVEVEGGKLVTLGSRALEILAPGDTYEEAYEKAERCAS 426 (485)
T ss_pred CCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 5678995652684222356978997043877998998369289999986989999999999985
No 103
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=125.19 Aligned_cols=289 Identities=21% Similarity=0.345 Sum_probs=220.5
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE-------E---------EEEECC
Q ss_conf 741899727630201476653189999999996598069960686521123245863-------7---------984167
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADR-------L---------YFESLT 681 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDr-------L---------YFEplt 681 (1162)
.-|++|+|--. -+.+-++.++||++--|.. |+..|- + -||++.
T Consensus 11 ~~kiLviGvnt-------------R~vveSA~klGf~V~sv~~--------y~~~Dl~~~a~~~l~~r~~~~~~rfe~~d 69 (389)
T COG2232 11 SCKILVIGVNT-------------RPVVESASKLGFEVYSVQY--------YDPADLPGDAISYLRERPGELLGRFENLD 69 (389)
T ss_pred CCEEEEEEECC-------------HHHHHHHHHCCEEEEEEEE--------ECCCCCCCCCCEEEEECCHHHCCCCCCCC
T ss_conf 64389996234-------------1767787744718998675--------34323664210278844854527655889
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCC-HHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8899999987485678227998445124668988888759838612752-033102867899988870986685421121
Q gi|254780439|r 682 EEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPD-SIDLAEDRDRFQKLLMELDLNQPRNGISHS 760 (1162)
Q Consensus 682 ~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~-~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s 760 (1162)
.+-+..+++.=.++ +++.++.++|.-+++-...+ +.+.+|.+|+ .+..+-++.+|++.++.+|.|-|+-...
T Consensus 70 e~~li~~~~~~~~d--vD~~ii~~sg~e~l~~~g~~---~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~-- 142 (389)
T COG2232 70 EQKLIEAAEDLAED--VDAPIIPFSGFEALRTSGEL---GCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI-- 142 (389)
T ss_pred HHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--
T ss_conf 89999999864453--24125403553212456754---564456782788999888886520101028999704321--
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 56655565536971675134444565412554899999999975210132211112233333333455777745670220
Q gi|254780439|r 761 VEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840 (1162)
Q Consensus 761 ~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl 840 (1162)
+....--+|++.+|++..||. - ++..+-++ .- -.+++..+|+
T Consensus 143 -----e~~~~gekt~IlKPv~GaGG~-~-------el~~~~Ee------------------------~~-~~~~i~Qefi 184 (389)
T COG2232 143 -----EPLEEGEKTLILKPVSGAGGL-V-------ELVKFDEE------------------------DP-PPGFIFQEFI 184 (389)
T ss_pred -----HHHHHCCEEEEEEECCCCCCE-E-------EECCCCCC------------------------CC-CCCEEHHHHC
T ss_conf -----144402101477302378860-1-------31004334------------------------58-7660033431
Q ss_pred CCCEEEEEEEEEECCCEEEEEEECC-CCHHCCCCCCE-----EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 1201001010230798499985201-10215245762-----79816866899999999999999987413357624788
Q gi|254780439|r 841 SDAMEIDVDALCQNDQVIVVGIIEH-IEEAGIHSGDS-----ACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQY 914 (1162)
Q Consensus 841 ~~a~EiEVDai~Dg~~v~I~gimEH-iE~aGVHSGDS-----~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQf 914 (1162)
+ ++.+-|..+++|.+.+....-+. |+ |..+--| --..|-.+.-. +++++.+..+...|+.+|.--|-|
T Consensus 185 ~-G~p~Svs~is~g~~a~~la~N~QiI~--~~~~~~~~f~Y~GNlTP~~~~~~---ee~e~la~elV~~lgL~GsnGVDf 258 (389)
T COG2232 185 E-GRPVSVSFISNGSDALTLAVNDQIID--GLRGEYSQFVYKGNLTPFPYEEV---EEAERLAEELVEELGLVGSNGVDF 258 (389)
T ss_pred C-CCEEEEEEEECCCCEEEEEEEEEEEC--CCCCCCCCCEECCCCCCCCCHHH---HHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 7-84137999735862389997002214--53233444101267677765026---899999999999842356666106
Q ss_pred EECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHC
Q ss_conf 512885999852444456304567773988999999998597210024666677776668738997203883445
Q gi|254780439|r 915 AIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKF 989 (1162)
Q Consensus 915 a~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~ 989 (1162)
++++...||||+|||.+-|.--+..++|+++.+...++.-|+- |..+.+++|++|--+|+=.+.
T Consensus 259 vl~d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af~G~L-----------pEr~kpr~~a~krILyap~~v 322 (389)
T COG2232 259 VLNDKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDGEL-----------PERPKPRGYACKRILYAPRTV 322 (389)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC-----------CCCCCCCEEEEEEEEECCCEE
T ss_conf 8606885799956854523788898617778999999845757-----------677776534776788645236
No 104
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=99.56 E-value=1e-11 Score=110.56 Aligned_cols=302 Identities=16% Similarity=0.253 Sum_probs=225.3
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEC----CHHHHHHHHHHHCCC
Q ss_conf 1899727630201476653189999999996598069960686521123245863798416----788999999874856
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESL----TEEDILEILRVEQQK 695 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEpl----t~E~V~~I~~~E~p~ 695 (1162)
||||+|+|-- -+.-++++.. -++=.+.+|-+=||=|---+ .+-.+=.+.= .++.|.+-++.++.+
T Consensus 2 kVLviG~GGR--------EHAla~~l~q-s~~v~~~~~apGN~Gta~~~--~~~~~~~~~~~~~~d~~~~~~FA~~~~id 70 (459)
T TIGR00877 2 KVLVIGNGGR--------EHALAWKLAQ-SPLVKYVYVAPGNAGTARLA--KNKNVAIEITKDVRDIEALVEFAKKKKID 70 (459)
T ss_pred EEEEECCCHH--------HHHHHHHHHC-CCCCCEEEEECCCCCCCCCH--HHHHHCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 5899748705--------8999998732-71133667826898622012--54441145786630089999999846975
Q ss_pred CCCCEEEEECCCHHHH--HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHCC
Q ss_conf 7822799844512466--8988888759838612752033102867899988870986-685421121566555655369
Q gi|254780439|r 696 GELVGIIVQFGGQTPL--KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLN-QPRNGISHSVEHARLIACEIG 772 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~--~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~-~p~~~~a~s~eea~~~a~~iG 772 (1162)
= .| .|==-|| -|...|++.|++++|++-++=-+=-++..-.++|++.||| .+.|...++.+||.++.++.|
T Consensus 71 L---~~---iGPE~PL~~G~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g 144 (459)
T TIGR00877 71 L---AV---IGPEAPLVLGLVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKG 144 (459)
T ss_pred E---EE---ECCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCC
T ss_conf 4---88---08741012014778986795145688788643328789999999648983222100089899999998418
Q ss_pred CC--EEEECCCCCCCCCCEEE----CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECCCCEE
Q ss_conf 71--67513444456541255----4899999999975210132211112233333333455-77774567022012010
Q gi|254780439|r 773 FP--LLIRPSYVLGGRAMQIV----YSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTL-LGTHPLLFDSYLSDAME 845 (1162)
Q Consensus 773 yP--VLVRPSyVLGG~~M~Iv----~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~v-s~~~pVlIdkfl~~a~E 845 (1162)
.| +.|+|.=-=+|.|-.|| .+.+|=..|+.+.+... .+ ...++|+||+||+ +.|
T Consensus 145 ~PA~~VVKadGLAAGKGV~V~Ge~L~~~eEA~~~~~~~~~~~------------------~FG~a~~~VVIEEfL~-G~E 205 (459)
T TIGR00877 145 APAEIVVKADGLAAGKGVIVAGEQLKTNEEAIKAVEEILEQK------------------AFGEAGERVVIEEFLE-GEE 205 (459)
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCC------------------CCCCCCCCEEEEECCC-CCC
T ss_conf 897489805666579862684760274789999999998547------------------6566688258964248-800
Q ss_pred EEEEEEEECCCEEEEEEECCCCH-----H-CCCCCCEEEEECCC---CCCHHHHHHHHH-----HHHHHHHH-CCCCCCC
Q ss_conf 01010230798499985201102-----1-52457627981686---689999999999-----99999874-1335762
Q gi|254780439|r 846 IDVDALCQNDQVIVVGIIEHIEE-----A-GIHSGDSACSLPSR---SLSQQLKDELIS-----QTKALAGA-LNVIGLI 910 (1162)
Q Consensus 846 iEVDai~Dg~~v~I~gimEHiE~-----a-GVHSGDS~~v~Ppq---sLs~~~~~~i~~-----~t~~ia~~-L~v~G~~ 910 (1162)
+-+.+++||+.+.-....++.=. . |.=+|===+..|+. -++++..+++.+ ....+.+. ..++|..
T Consensus 206 ~S~~~~~DG~~v~Plp~aQDhKR~~egD~~GpNTGGMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvL 285 (459)
T TIGR00877 206 VSLLAFVDGKTVIPLPPAQDHKRALEGDKKGPNTGGMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVL 285 (459)
T ss_pred EEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89999974866770542157650466888788557863302787844237178999987778999999985289724787
Q ss_pred EEEEEE-CCCE---EEEEEECCCCCC--CHHHHHHHHC--CCHHHHHHHHHCCCCCC
Q ss_conf 478851-2885---999852444456--3045677739--88999999998597210
Q gi|254780439|r 911 NVQYAI-KDGK---IYILEVNPRASR--TVPFIAKAIG--FPVAKVAARIIAGESLD 959 (1162)
Q Consensus 911 NIQfa~-kd~~---iYVIEvNpRaSR--tvPfvSKatG--~pl~~iAt~v~lG~~L~ 959 (1162)
=-||.+ +++. -+|||=|-|+.= |-|.+.-- . -||.++.-.+.=| +|+
T Consensus 286 YaglMl~~~G~~L~PkVlEfN~RFGDPEtq~vL~lL-~dqsdL~e~~~a~~eg-~L~ 340 (459)
T TIGR00877 286 YAGLMLTKEGGVLVPKVLEFNVRFGDPETQAVLPLL-KDQSDLLEVCLAAVEG-KLD 340 (459)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHH-CCCCCHHHHHHHHHCC-CCC
T ss_conf 413899768988644788970527885344464542-3888889999998456-665
No 105
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=99.55 E-value=9.4e-11 Score=102.94 Aligned_cols=363 Identities=20% Similarity=0.236 Sum_probs=246.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECCCCCEEECCCCCCCCEEECCC----CHHHHHHHHHHHC
Q ss_conf 9999767754205054666888999999998--797899974876501078451310043379----9999999998628
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKE--EGYRIILVNSNPATIMTDPDLADATYTEPI----TPEVVAKIIEKER 82 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke--~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePl----t~e~v~~Ii~~E~ 82 (1162)
||||||+|.= -+=-+.+|.+ .=.+++.-+=||=|-..+.. -.+=++.= ..+.|.+-.++++
T Consensus 2 kVLviG~GGR-----------EHAla~~l~qs~~v~~~~~apGN~Gta~~~~~--~~~~~~~~~~~~d~~~~~~FA~~~~ 68 (459)
T TIGR00877 2 KVLVIGNGGR-----------EHALAWKLAQSPLVKYVYVAPGNAGTARLAKN--KNVAIEITKDVRDIEALVEFAKKKK 68 (459)
T ss_pred EEEEECCCHH-----------HHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH--HHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 5899748705-----------89999987327113366782689862201254--4411457866300899999998469
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 988997588702688889988759628828757149989998605889999999987898-8862000234433333233
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLA-TPKSILANATDIKEHDRKL 161 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip-~~~s~~~~~~~~~~~~~~~ 161 (1162)
+|=.+++== .-|..-|-+ -|++.||+..|++.++=+.=-++.-.|++|++.||| ++..
T Consensus 69 idL~~iGPE----~PL~~G~vd--~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y--------------- 127 (459)
T TIGR00877 69 IDLAVIGPE----APLVLGLVD--ALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEY--------------- 127 (459)
T ss_pred CCEEEECCC----CCHHHHHHH--HHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEE---------------
T ss_conf 754880874----101201477--89867951456887886433287899999996489832221---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCC----
Q ss_conf 333334444444433332221111112334444444554448999999999871996--99941326786645111----
Q gi|254780439|r 162 HEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLP--LIIRPSFTLGGTGGGIA---- 235 (1162)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyP--vivRps~~lGG~G~~iv---- 235 (1162)
..+++.+||.++.++.|.| ++|||.===+|.|--||
T Consensus 128 --------------------------------------~~Ft~~eea~~y~~~~g~PA~~VVKadGLAAGKGV~V~Ge~L 169 (459)
T TIGR00877 128 --------------------------------------EVFTDPEEAKSYIQEKGAPAEIVVKADGLAAGKGVIVAGEQL 169 (459)
T ss_pred --------------------------------------ECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEECCCC
T ss_conf --------------------------------------000898999999984188974898056665798626847602
Q ss_pred CCHHHHHHHHHHHHHH--C--CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCC-----CCC-CCCCCEEEEECC
Q ss_conf 6999999999989985--7--99827986644997899999997289988999630000-----001-000010134337
Q gi|254780439|r 236 YNRSEFLEIVENGLHA--S--PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENL-----DPM-GVHTGDSITVAP 305 (1162)
Q Consensus 236 ~n~eeL~~~~~~al~~--s--~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~-----dp~-GiHtGDSi~vaP 305 (1162)
.+.+|=.+++.+.+.. | ..++|+||+||.| .|+-+.+|-|++ +++-.-...+- .-- |.+||===+.+|
T Consensus 170 ~~~eEA~~~~~~~~~~~~FG~a~~~VVIEEfL~G-~E~S~~~~~DG~-~v~Plp~aQDhKR~~egD~~GpNTGGMGAYsP 247 (459)
T TIGR00877 170 KTNEEAIKAVEEILEQKAFGEAGERVVIEEFLEG-EEVSLLAFVDGK-TVIPLPPAQDHKRALEGDKKGPNTGGMGAYSP 247 (459)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CCEEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7478999999999854765666882589642488-008999997486-67705421576504668887885578633027
Q ss_pred CC---CCCHHHHHHHHHHHH-----HHHHH-HCCCCCCCEEEEEEECCCCE---EEEEEECCCCCHHHHHH--HHHH-CC
Q ss_conf 32---289889999999999-----99987-18345764689999558984---99985044431035788--8763-46
Q gi|254780439|r 306 AL---TLTDKEYQLMRNAAI-----AVLKE-IGVESGGANVQFAVNPKNGK---MVVIEMNPRVSRSSALA--SKAT-GF 370 (1162)
Q Consensus 306 ~q---TL~d~~~q~LR~~a~-----kI~r~-lgi~vG~~nVQFAv~p~~~~---~yvIEvNpR~sRssala--skat-gy 370 (1162)
+. -.+++..+++.+.-+ .+.+. ..+ .|.+=-||.|.+ +++ =+|||-|-|+--==+-+ ..-- --
T Consensus 248 ~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y-~GvLYaglMl~~-~G~~L~PkVlEfN~RFGDPEtq~vL~lL~dqs 325 (459)
T TIGR00877 248 APHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPY-KGVLYAGLMLTK-EGGVLVPKVLEFNVRFGDPETQAVLPLLKDQS 325 (459)
T ss_pred CCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEEEEEEC-CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 8784423717899998777899999998528972-478741389976-89886447889705278853444645423888
Q ss_pred CHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCEEEEEEE------ECCCCCCCCC-------------------
Q ss_conf 1476777641344610--135775677776665776776898544------2012114776-------------------
Q gi|254780439|r 371 PIAKIAAKLAVGYTLD--ELGNDITGGKTPASFEPSIDYIVTKIP------RFTFEKFPGS------------------- 423 (1162)
Q Consensus 371 pia~vaakl~~G~~L~--ei~~~~~~~~~~a~~Ep~ldyv~vK~p------~f~f~kf~~~------------------- 423 (1162)
|+..|+-.++=|. |+ ++... + .+..|. +||=.| ..+..=+|+.
T Consensus 326 dL~e~~~a~~eg~-L~d~~~~~~-~-~~~~av-------~VvlA~GalkGR~~~~~GYP~~~~~G~~I~Gd~~~~~~~~~ 395 (459)
T TIGR00877 326 DLLEVCLAAVEGK-LDDSEVELR-F-DNRAAV-------TVVLASGALKGREYLKEGYPEDYRKGDPITGDEEEAEAEGV 395 (459)
T ss_pred CHHHHHHHHHCCC-CCCCEEEEE-E-CCCCEE-------EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCC
T ss_conf 8899999984566-656411248-8-178359-------99980475325677888778886012265267189752697
Q ss_pred CCCCCC--CCCCCC----------HHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 666677--310010----------0222267689999989975037
Q gi|254780439|r 424 DVTLTT--SMKSVG----------EVMAIGRTFAESLQKALRGLET 457 (1162)
Q Consensus 424 ~~~Lgt--~MkS~G----------Evm~iGr~f~eA~~KAlrsle~ 457 (1162)
.-...- --+-.| -|.|+|.|++||-.+|-+.++.
T Consensus 396 ~vf~Ag~~~~~~~g~~vt~GGRVL~V~a~g~~l~eA~~~Ay~a~~~ 441 (459)
T TIGR00877 396 KVFHAGTKTEQDNGKLVTNGGRVLAVVALGKDLEEARERAYEAVEK 441 (459)
T ss_pred EEEECCEEEEECCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8997332576208737971873999983262578999999998875
No 106
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.54 E-value=5.1e-12 Score=112.95 Aligned_cols=285 Identities=20% Similarity=0.305 Sum_probs=211.3
Q ss_pred CC----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCEEECCCCCCCCEE---------E
Q ss_conf 97----766556999976775420505466688899999999879789997487-650107845131004---------3
Q gi|254780439|r 1 MP----KRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN-PATIMTDPDLADATY---------T 66 (1162)
Q Consensus 1 MP----~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN-paTi~TD~~~aD~vY---------~ 66 (1162)
|| |...-.|+|+||-- .-+....+.++|++|-.|.-- |+-..+|.+ -.+| |
T Consensus 1 mpr~h~k~ek~~kiLviGvn-------------tR~vveSA~klGf~V~sv~~y~~~Dl~~~a~--~~l~~r~~~~~~rf 65 (389)
T COG2232 1 MPRKHSKSEKSCKILVIGVN-------------TRPVVESASKLGFEVYSVQYYDPADLPGDAI--SYLRERPGELLGRF 65 (389)
T ss_pred CCCCHHCCCCCCEEEEEEEC-------------CHHHHHHHHHCCEEEEEEEEECCCCCCCCCC--EEEEECCHHHCCCC
T ss_conf 97301001456438999623-------------4176778774471899867534323664210--27884485452765
Q ss_pred CCCCHHHHHHHHHH--HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHH-HHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 37999999999986--28988997588702688889988759628828757149989-9986058899999999878988
Q gi|254780439|r 67 EPITPEVVAKIIEK--ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPE-TIDKAEDRSLFSKAMQNIPLAT 143 (1162)
Q Consensus 67 ePlt~e~v~~Ii~~--E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~-~I~~~edR~~F~~~l~~~gip~ 143 (1162)
|++....+.++++. ++.|+++..++|--+|+...++ +...+|.+++ .+..+-++.+|.+.++.+|.|.
T Consensus 66 e~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~~~g~~---------~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~ 136 (389)
T COG2232 66 ENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALRTSGEL---------GCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPE 136 (389)
T ss_pred CCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 58898999999986445324125403553212456754---------564456782788999888886520101028999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 86200023443333323333333444444443333222111111233444444455444899999999987199699941
Q gi|254780439|r 144 PKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRP 223 (1162)
Q Consensus 144 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRp 223 (1162)
|+. .+++...+--+|+|+||
T Consensus 137 p~~------------------------------------------------------------~~~e~~~~gekt~IlKP 156 (389)
T COG2232 137 PSE------------------------------------------------------------KKIEPLEEGEKTLILKP 156 (389)
T ss_pred CHH------------------------------------------------------------HHHHHHHHCCEEEEEEE
T ss_conf 704------------------------------------------------------------32114440210147730
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCC-CCCCCCC--EE
Q ss_conf 32678664511169999999999899857998279866449978999999972899889996300000-0100001--01
Q gi|254780439|r 224 SFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLD-PMGVHTG--DS 300 (1162)
Q Consensus 224 s~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~d-p~GiHtG--DS 300 (1162)
+++.||. -+++.-.|| -+...++..+||.| +.+-+-++.++.+-..+.|+..=+| +.|--++ =+
T Consensus 157 v~GaGG~-~el~~~~Ee-----------~~~~~~i~Qefi~G-~p~Svs~is~g~~a~~la~N~QiI~~~~~~~~~f~Y~ 223 (389)
T COG2232 157 VSGAGGL-VELVKFDEE-----------DPPPGFIFQEFIEG-RPVSVSFISNGSDALTLAVNDQIIDGLRGEYSQFVYK 223 (389)
T ss_pred CCCCCCE-EEECCCCCC-----------CCCCCEEHHHHCCC-CEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCEEC
T ss_conf 2378860-131004334-----------58766003343178-4137999735862389997002214532334441012
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 34337322898899999999999998718345764689999558984999850444310357888763461476777641
Q gi|254780439|r 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLA 380 (1162)
Q Consensus 301 i~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~ 380 (1162)
=-++|..+... .+++..|-.++..||+ +|..-|-|.++ +..-||||||||..-|---+..++|..+.+.....-
T Consensus 224 GNlTP~~~~~~---ee~e~la~elV~~lgL-~GsnGVDfvl~--d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af 297 (389)
T COG2232 224 GNLTPFPYEEV---EEAERLAEELVEELGL-VGSNGVDFVLN--DKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAF 297 (389)
T ss_pred CCCCCCCCHHH---HHHHHHHHHHHHHHCC-CCCCCCCEEEE--CCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 67677765026---8999999999998423-56666106860--688579995685452378889861777899999984
Q ss_pred CCCCCCCC
Q ss_conf 34461013
Q gi|254780439|r 381 VGYTLDEL 388 (1162)
Q Consensus 381 ~G~~L~ei 388 (1162)
-|.--.+.
T Consensus 298 ~G~LpEr~ 305 (389)
T COG2232 298 DGELPERP 305 (389)
T ss_pred CCCCCCCC
T ss_conf 57576777
No 107
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.7e-12 Score=116.66 Aligned_cols=270 Identities=19% Similarity=0.219 Sum_probs=203.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHH--HHHHHHH
Q ss_conf 99999999965980699606865211232458637984167889999998748567822799844512466--8988888
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPL--KLSKILE 718 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~--~la~~L~ 718 (1162)
.-+.+++|+..|+...-+-.+++-..-......+ ...+++. . ++...-|-... .+..-|+
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-v---vfp~lhG~~gEDg~iqg~le 84 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTK--------------RVLQKAD-V---VFPVLHGPYGEDGTIQGLLE 84 (317)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHH--------------HHHCCCC-E---EEEECCCCCCCCCHHHHHHH
T ss_conf 8999998761487158873246632785031012--------------2202698-7---78715588888706999999
Q ss_pred HCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHHCCCCEEEECCCCCCCCCCEEECCH
Q ss_conf 7598386127520331028678999888709866854211215----665556553697167513444456541255489
Q gi|254780439|r 719 KNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSV----EHARLIACEIGFPLLIRPSYVLGGRAMQIVYSE 794 (1162)
Q Consensus 719 ~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~----eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~ 794 (1162)
-.|++..|.+..+--.+-|......+....+++++++...+.- ....++....|||++|+|.-..+--++..|++.
T Consensus 85 ~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~ 164 (317)
T COG1181 85 LLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVE 164 (317)
T ss_pred HHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEE
T ss_conf 70998760764453323509999889986786512356753345204788877414688789985873113679988350
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECC---------
Q ss_conf 99999999752101322111122333333334557777456702201201001010230798499985201---------
Q gi|254780439|r 795 NMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEH--------- 865 (1162)
Q Consensus 795 ~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEH--------- 865 (1162)
.+++...+.+.. -+..+++++|+. ++|++|+++.+.......++-|=
T Consensus 165 ~d~~~~~e~a~~-----------------------~d~~vl~e~~~~-~rei~v~vl~~~~~~~~l~~~eI~~~~~~fyd 220 (317)
T COG1181 165 GDLQSALELAFK-----------------------YDRDVLREQGIT-GREIEVGVLGNDYEEQALPLGEIPPKGEEFYD 220 (317)
T ss_pred CCHHHHHHHHHH-----------------------HCCCCEECCCCC-CCEEEEEECCCCCCCEECCCCEEECCCCEEEE
T ss_conf 436999999998-----------------------478512003776-65589863588655244476168169986986
Q ss_pred CCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--CEEEEEEECCCCC----CCHHHHHH
Q ss_conf 10215245762798168668999999999999999874133576247885128--8599985244445----63045677
Q gi|254780439|r 866 IEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIYILEVNPRAS----RTVPFIAK 939 (1162)
Q Consensus 866 iE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd--~~iYVIEvNpRaS----RtvPfvSK 939 (1162)
-|..=+++|.+....|. .++++..+++++.+.++.++|+..|.+-+-|.+.+ +++|++|+||.-. .-+|-..+
T Consensus 221 ye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~ 299 (317)
T COG1181 221 YEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAA 299 (317)
T ss_pred EECCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 00014578984353788-99988999999999999986088875888799987899899998708998765353767798
Q ss_pred HHCCCHHHHHHHHH
Q ss_conf 73988999999998
Q gi|254780439|r 940 AIGFPVAKVAARII 953 (1162)
Q Consensus 940 atG~pl~~iAt~v~ 953 (1162)
+.|+++..+..++.
T Consensus 300 ~~gi~~~~L~~~~~ 313 (317)
T COG1181 300 AAGISFAILVLRFV 313 (317)
T ss_pred HCCCCHHHHHHHHH
T ss_conf 75998899999998
No 108
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=99.51 E-value=3.7e-11 Score=106.12 Aligned_cols=263 Identities=23% Similarity=0.358 Sum_probs=201.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCC--CCC--CEEECCC-CHHHHHHHH-----
Q ss_conf 999976775420505466688899999999879789997487650107845--131--0043379-999999999-----
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPD--LAD--ATYTEPI-TPEVVAKII----- 78 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~--~aD--~vY~ePl-t~e~v~~Ii----- 78 (1162)
+|=|||.|=. |-=-..|-+.+|+++..+.++.. ||. .|| ..-..|. ..+.+.+..
T Consensus 1 ~vGilGGGQL-----------G~M~~~aA~~LG~~~~VL~~~~~----~PA~q~Ad~~~~v~a~~~d~~~i~~La~~cDv 65 (386)
T TIGR01161 1 TVGILGGGQL-----------GRMLALAAKKLGIKVAVLDPDAN----SPAKQVADSREHVLASFTDPEAIRELAEACDV 65 (386)
T ss_pred CEEEEECCHH-----------HHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCCCEEEEEECCHHHHHHHHHHCCE
T ss_conf 9689718848-----------99999987127958998548989----73111289855799851487899999976565
Q ss_pred ---HHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf ---86289889975887026888899887596288287571499899986058899999999878988862000234433
Q gi|254780439|r 79 ---EKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 79 ---~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
+.|+.|-= ++= +|...|- .++ +=+++.++...-||-.=|++++++|+|||+.+.+..
T Consensus 66 iT~E~Ehv~~~--~L~---------~L~~~g~----~~~-~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~---- 125 (386)
T TIGR01161 66 ITFEFEHVDVE--ALE---------KLEARGD----KVK-VRPSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEI---- 125 (386)
T ss_pred EEEEECCCCCH--HHH---------HHHHCCC----EEE-EECCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEEC----
T ss_conf 54310137856--789---------9983598----477-603889999883658999999966899884120223----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCCC
Q ss_conf 333233333334444444433332221111112334444444554448999999999871996999413267-8664511
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTL-GGTGGGI 234 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~l-GG~G~~i 234 (1162)
.+.++...+.+++|||+++|..=.+ =|+|-.+
T Consensus 126 -----------------------------------------------~~~~~~~~~~~~~g~p~VlK~~~gGYDGrGq~~ 158 (386)
T TIGR01161 126 -----------------------------------------------KDEEELDSALQELGFPVVLKARRGGYDGRGQFV 158 (386)
T ss_pred -----------------------------------------------CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEE
T ss_conf -----------------------------------------------684257899987398479984206527731089
Q ss_pred CCCHHHHHHHHHHHHHHCCCC--CEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCC--CCCCCEEEEECCCCCCC
Q ss_conf 169999999999899857998--27986644997899999997289988999630000001--00001013433732289
Q gi|254780439|r 235 AYNRSEFLEIVENGLHASPTT--EVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPM--GVHTGDSITVAPALTLT 310 (1162)
Q Consensus 235 v~n~eeL~~~~~~al~~s~~~--~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~--GiHtGDSi~vaP~qTL~ 310 (1162)
+++++++.. +.+..++. ++++|+|+.=-+|+-+-|.|+.+|...+.=-.||+-.= ||= -.+|+|+.-+.
T Consensus 159 i~~~~~~~~----~~~~~~~~~~~~~~E~fV~F~~Elsv~vaR~~~G~~~~YP~ven~~~ddagIl---~~~~aPAPa~p 231 (386)
T TIGR01161 159 IKSEADLPQ----ALKELGDKEEELIVEEFVPFERELSVIVARSADGEIAFYPVVENIHQDDAGIL---RLVVAPAPAVP 231 (386)
T ss_pred ECCHHHHHH----HHHHCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEECCCEEEEEECCCCEE---EEEEECCCCCC
T ss_conf 747432889----99852888405898523562006999999778974888286123565277877---89863377783
Q ss_pred HHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCC----EEEEEEECCCCCHHH
Q ss_conf 889---999999999999871834576468999955-898----499985044431035
Q gi|254780439|r 311 DKE---YQLMRNAAIAVLKEIGVESGGANVQFAVNP-KNG----KMVVIEMNPRVSRSS 361 (1162)
Q Consensus 311 d~~---~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p-~~~----~~yvIEvNpR~sRss 361 (1162)
+.. -|+-++.|.+++++|++ ||...|+|=+-| .+| +.-|=|+=||.-=|-
T Consensus 232 ~~~~Q~~~~A~~~A~~~~~~L~~-VG~~avE~F~~Pa~dGP~P~~LLvNElAPR~HNSG 289 (386)
T TIGR01161 232 DALVQQQKKAQELARRLAEELDY-VGVLAVEMFLLPAKDGPEPDELLVNELAPRPHNSG 289 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-EEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCH
T ss_conf 45789999999999999986196-17888999830688789512056610257889841
No 109
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=99.49 E-value=5.6e-14 Score=128.49 Aligned_cols=96 Identities=34% Similarity=0.498 Sum_probs=89.8
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE--------CCHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841--------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES--------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp--------lt~E~V~~I~~ 690 (1162)
|||||.+.|++ ++++++++|++|+++|+||+||+++||+++.+|++||+| |+.|.|.+|++
T Consensus 2 ~kvLIanrGei-----------A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~ 70 (109)
T pfam00289 2 KKVLVANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAE 70 (109)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 48999888799-----------9999999998699799996334415225665057653479983211137999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH----HHHHHHHCCCEEEECCCCHH
Q ss_conf 7485678227998445124668----98888875983861275203
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK----LSKILEKNQIPILGTQPDSI 732 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~----la~~L~~~gv~ilGts~~~I 732 (1162)
.++ +...++||..++ +++.+++.|+.++|+|+++|
T Consensus 71 ~~~-------~~aihpGyGflsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 71 KEG-------ADAIHPGYGFLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred HHC-------CCEEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 818-------896877976233599999999988898999583549
No 110
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.32 E-value=5.4e-10 Score=96.92 Aligned_cols=299 Identities=19% Similarity=0.305 Sum_probs=205.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEE-CCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999767754205054666888999999998797899974876501078451310043-379999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYT-EPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~-ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
++|++|+|.. |.+..-.++..|.+++.++..+..- -...+++.|+ .-+..+.+..++++++||.++
T Consensus 1 ~~~l~g~g~~-----------g~~~~~~~~~lg~~~~~~d~~~~~p--~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~ 67 (407)
T TIGR01142 1 RVLLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYADAP--ALQVAHRSYVIDLLDGDALRAVIEREKPDYIV 67 (407)
T ss_pred CEEEECCCCC-----------CHHHHHHHHHCCCEEEEECCCCCCC--HHHHHHHHHHEECCCHHHHHHHHHHHCCCCCC
T ss_conf 9466137653-----------3144444543471268733545762--13332111100002678999998750674100
Q ss_pred ECCCCCHHHHHHHHHHHCCCHHHHC--CEEECCCHHHHHHHCCHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7588702688889988759628828--75714998999860588999999-99878988862000234433333233333
Q gi|254780439|r 88 PTTGGQTALNTALSLKRMGVLDRYG--VEMIGAKPETIDKAEDRSLFSKA-MQNIPLATPKSILANATDIKEHDRKLHEE 164 (1162)
Q Consensus 88 p~~GGqtalnl~~~L~e~gil~~~~--v~~lG~~~~~I~~~edR~~F~~~-l~~~gip~~~s~~~~~~~~~~~~~~~~~~ 164 (1162)
|..-.- +.....++ ++.| .-.+-++..+.+.+-||+..+++ .+++|+|+.+.+.+.
T Consensus 68 p~~~~~-~~~~l~~~------~~~gg~c~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------- 126 (407)
T TIGR01142 68 PEIEAI-ATDALLEL------EAEGGECYTVVPTARATKLTLNREGLRRLAAEELGLPTAPYEFAD-------------- 126 (407)
T ss_pred HHHHHH-HHHHHHHH------HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--------------
T ss_conf 024455-46667766------524882466403520222121056778776776325422001110--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 33444444443333222111111233444444455444899999999987199699941326786645111699999999
Q gi|254780439|r 165 ERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEI 244 (1162)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~ 244 (1162)
+.++..+.+..+|||++++|.....|.|..++.+.+++...
T Consensus 127 ---------------------------------------~~~~~~~~~~~~g~p~~~~p~~~~~g~g~~~~~~~~~~~~~ 167 (407)
T TIGR01142 127 ---------------------------------------SLEELREAVEKIGFPCVVKPVLSSSGKGQSVVRGPEDLEKA 167 (407)
T ss_pred ---------------------------------------HHHHHHHHHHHCCCCCEEHHHHCCCCCCCEEECCHHHHHHH
T ss_conf ---------------------------------------17889999986077500012211466653000473456788
Q ss_pred HHHHH-----HH--CCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCC--CEEEEECCCCCCCHHHHH
Q ss_conf 99899-----85--7998279866449978999999972899889996300000010000--101343373228988999
Q gi|254780439|r 245 VENGL-----HA--SPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHT--GDSITVAPALTLTDKEYQ 315 (1162)
Q Consensus 245 ~~~al-----~~--s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHt--GDSi~vaP~qTL~d~~~q 315 (1162)
-+.+. .. .....+.+|.++.---|+-+-.+|...+|--. ..-.+|+|+.. ||..---.++.++.....
T Consensus 168 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~p~g~~~~~g~~~~~w~p~~~~~~~~~ 244 (407)
T TIGR01142 168 WEYAKGHQVQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGNGPL---TTFCAPIGHRQEDGDYHESWQPQELSEKALE 244 (407)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEECCCCCCE---EEECCCCCCCCCCCCCHHCCCCHHHHHHHHH
T ss_conf 7665043101134555562455200131021100000002777750---1101322430015540001462122178899
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHH--CCCHHHHHHHHHCCCCCC
Q ss_conf 99999999998718345764689999558984999850444310357888763--461476777641344610
Q gi|254780439|r 316 LMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKAT--GFPIAKIAAKLAVGYTLD 386 (1162)
Q Consensus 316 ~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskat--gypia~vaakl~~G~~L~ 386 (1162)
.....+.++...+|= .|...+++.+. ..+.++-|+.||-..+....-... ...-..+-.+..+|..++
T Consensus 245 ~~~~~~~~~~~~lgg-~g~~g~~~~~~--g~~~~~~~~~p~p~~~g~~~~~~~pp~~~~~~~~~~~~~g~p~~ 314 (407)
T TIGR01142 245 EAKRIAKRVTDALGG-YGLFGVELFVK--GDEVWFSEVSPRPHDTGLVTLISQPPDLSEFALHLRAILGLPVP 314 (407)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEEEC--CCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999888876346-64001445651--66135420466766651378740688720466544554236667
No 111
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.3e-09 Score=89.10 Aligned_cols=277 Identities=16% Similarity=0.217 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCC--CEEECC-CCHH----HHHHHHHHHCCCEEEECCCCCHHHHHH
Q ss_conf 688899999999879789997487650107845131--004337-9999----999999862898899758870268888
Q gi|254780439|r 27 DYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD--ATYTEP-ITPE----VVAKIIEKERPDAILPTTGGQTALNTA 99 (1162)
Q Consensus 27 Dys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD--~vY~eP-lt~e----~v~~Ii~~E~pDaIlp~~GGqtalnl~ 99 (1162)
-+++--..++.+.-|++...++++..+..-..-.+- ..++.. ++.+ .-.........|++++--+.+... +
T Consensus 16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~--~ 93 (318)
T COG0189 16 KDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDF--A 93 (318)
T ss_pred CCHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCHHHH--H
T ss_conf 54399998877860734899716531145133688886653221001012433310022203672899737860456--8
Q ss_pred HHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99887596288287571499899986058899999999878988862000234433333233333334444444433332
Q gi|254780439|r 100 LSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELD 179 (1162)
Q Consensus 100 ~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1162)
..+.+ .++..|+.++ -++.+|..+.|+-...+++...|+|+|++.++.
T Consensus 94 ~~~~~--~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~----------------------------- 141 (318)
T COG0189 94 TRFLR--LAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITR----------------------------- 141 (318)
T ss_pred HHHHH--HHHHCCCEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-----------------------------
T ss_conf 99999--9987498687-887998763557999999996599999868965-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCE
Q ss_conf 2211111123344444445544489999-99999871996999413267866451116999-999999989985799827
Q gi|254780439|r 180 AALYALELKWNLEENDRKHRYICHAMAV-AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRS-EFLEIVENGLHASPTTEV 257 (1162)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~e-a~~~a~~iGyPvivRps~~lGG~G~~iv~n~e-eL~~~~~~al~~s~~~~v 257 (1162)
+.++ +...++..|||+++||.++-||+|--.+.|.+ +|.++.+.....+ .+.+
T Consensus 142 ------------------------~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~-~~~~ 196 (318)
T COG0189 142 ------------------------DPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEG-RKLI 196 (318)
T ss_pred ------------------------CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHCCC-CCEE
T ss_conf ------------------------847889999974689889964788886655994377656999999863455-6429
Q ss_pred EEEEECCCCE-EEEEEEEEECCCCEEEEEEC-----CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9866449978-99999997289988999630-----00000100001013433732289889999999999999871834
Q gi|254780439|r 258 LIEESVLGWK-EYELEMMRDIKGNCIVVCSI-----ENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVE 331 (1162)
Q Consensus 258 lIeksl~g~k-EiE~eVirD~~gn~i~v~~~-----En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~ 331 (1162)
++.+||.-.+ .+---++.|.. .+|.- -+-..-+-+.+.-- .+..+.|+.+ +++.|.|+++.||.
T Consensus 197 ivQeyi~~~~~~~rrivv~~~~----~~~~y~~~R~~~~~~~R~N~a~Gg-~~e~~~l~~e----~~elA~kaa~~lGl- 266 (318)
T COG0189 197 IVQEYIPKAKRDDRRVLVGGGE----VVAIYALARIPASGDFRSNLARGG-RAEPCELTEE----EEELAVKAAPALGL- 266 (318)
T ss_pred EEECCCCCCCCCEEEEEEECCE----EEEEEEEECCCCCCCCEEECCCCC-EECCCCCCHH----HHHHHHHHHHHHCC-
T ss_conf 8620347677873999998999----989871200477775201011575-2045369999----99999999997489-
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCCCCH-HHHHHHHHHCCCHHHHHH
Q ss_conf 5764689999558984999850444310-357888763461476777
Q gi|254780439|r 332 SGGANVQFAVNPKNGKMVVIEMNPRVSR-SSALASKATGFPIAKIAA 377 (1162)
Q Consensus 332 vG~~nVQFAv~p~~~~~yvIEvNpR~sR-ssalaskatgypia~vaa 377 (1162)
+.+-|-+.-+ ++.+||+|||+ |= --....+.+|+.++....
T Consensus 267 -~~~GVDiie~--~~g~~V~EVN~--sP~~~~~i~~~~g~~~~~~~~ 308 (318)
T COG0189 267 -GLVGVDIIED--KDGLYVTEVNV--SPTGKGEIERVTGVNIAGLII 308 (318)
T ss_pred -CEEEEEEEEE--CCCEEEEEEEC--CCCCCCCHHHCCCCCHHHHHH
T ss_conf -4799999970--89629999868--965235214306976799999
No 112
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=99.28 E-value=7.6e-09 Score=87.85 Aligned_cols=288 Identities=20% Similarity=0.328 Sum_probs=219.4
Q ss_pred EEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC------EEEEEECCHHHHHHHHHHHCC
Q ss_conf 89972763020147665318999999999659806996068652112324586------379841678899999987485
Q gi|254780439|r 621 IVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIAD------RLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 621 viVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sD------rLYFEplt~E~V~~I~~~E~p 694 (1162)
|=|||+|=. =||.+. +-+++|++.+.+-.+++ |.+--++| -=||+|-..+.+-+.++
T Consensus 2 vGilGGGQL--------G~M~~~---aA~~LG~~~~VL~~~~~--~PA~q~Ad~~~~v~a~~~d~~~i~~La~~cD---- 64 (386)
T TIGR01161 2 VGILGGGQL--------GRMLAL---AAKKLGIKVAVLDPDAN--SPAKQVADSREHVLASFTDPEAIRELAEACD---- 64 (386)
T ss_pred EEEEECCHH--------HHHHHH---HHHHCCCEEEEECCCCC--CCCCCCCCCCCEEEEEECCHHHHHHHHHHCC----
T ss_conf 689718848--------999999---87127958998548989--7311128985579985148789999997656----
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHH
Q ss_conf 678227998445124668988888759--83861275203310286789998887098668542112--15665556553
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISH--SVEHARLIACE 770 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~--s~eea~~~a~~ 770 (1162)
||+-===..+...-.+|+..| +++. .+++++-..-||..=.++|+++|++.|+|..+. +.++...+..+
T Consensus 65 ------viT~E~Ehv~~~~L~~L~~~g~~~~~~-P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~ 137 (386)
T TIGR01161 65 ------VITFEFEHVDVEALEKLEARGDKVKVR-PSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQE 137 (386)
T ss_pred ------EEEEEECCCCCHHHHHHHHCCCEEEEE-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf ------554310137856789998359847760-3889999883658999999966899884120223684257899987
Q ss_pred CCCCEEEECCCCC-CCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEECCCCEEEE
Q ss_conf 6971675134444-5654125548999999999752101322111122333333334557777--456702201201001
Q gi|254780439|r 771 IGFPLLIRPSYVL-GGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTH--PLLFDSYLSDAMEID 847 (1162)
Q Consensus 771 iGyPVLVRPSyVL-GG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~--pVlIdkfl~~a~EiE 847 (1162)
+|||++++-+-.. =|||-.++.++.+++..++. .++. ++++|+|+.=-+|+=
T Consensus 138 ~g~p~VlK~~~gGYDGrGq~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~E~fV~F~~Els 192 (386)
T TIGR01161 138 LGFPVVLKARRGGYDGRGQFVIKSEADLPQALKE-------------------------LGDKEEELIVEEFVPFERELS 192 (386)
T ss_pred CCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHH-------------------------CCCCCEEEEEEECCCCCEEEE
T ss_conf 3984799842065277310897474328899985-------------------------288840589852356200699
Q ss_pred EEEEEEC-CCEEEEEEEC--CCCHHCCCCCCEEEEECCCCCCHHH---HHHHHHHHHHHHHHCCCCCCCEEEE-EE--CC
Q ss_conf 0102307-9849998520--1102152457627981686689999---9999999999987413357624788-51--28
Q gi|254780439|r 848 VDALCQN-DQVIVVGIIE--HIEEAGIHSGDSACSLPSRSLSQQL---KDELISQTKALAGALNVIGLINVQY-AI--KD 918 (1162)
Q Consensus 848 VDai~Dg-~~v~I~gimE--HiE~aGVHSGDS~~v~PpqsLs~~~---~~~i~~~t~~ia~~L~v~G~~NIQf-a~--kd 918 (1162)
|=++|+- +.+..+=+.| |-|.|||= -.++.|+..+.+.. .++.++++.+++.+|+++|.+-|+| .+ +|
T Consensus 193 v~vaR~~~G~~~~YP~ven~~~ddagIl---~~~~aPAPa~p~~~~Q~~~~A~~~A~~~~~~L~~VG~~avE~F~~Pa~d 269 (386)
T TIGR01161 193 VIVARSADGEIAFYPVVENIHQDDAGIL---RLVVAPAPAVPDALVQQQKKAQELARRLAEELDYVGVLAVEMFLLPAKD 269 (386)
T ss_pred EEEEECCCCCEEECCCEEEEEECCCCEE---EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf 9999778974888286123565277877---8986337778345789999999999999986196178889998306887
Q ss_pred C----EEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 8----59998524444563045677739889999999985972100
Q gi|254780439|r 919 G----KIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 (1162)
Q Consensus 919 ~----~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~ 960 (1162)
+ ++-|=|.-||-==|==++==+....==+.-.|+.+|-+|.+
T Consensus 270 GP~P~~LLvNElAPR~HNSGHyTlDgc~tSQFE~hLRAi~~LPLg~ 315 (386)
T TIGR01161 270 GPEPDELLVNELAPRPHNSGHYTLDGCSTSQFEQHLRAILGLPLGS 315 (386)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8951205661025788984126566543317999999970889874
No 113
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.28 E-value=2e-08 Score=84.57 Aligned_cols=280 Identities=20% Similarity=0.267 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHCCCE--EEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC-----CHHHHHHHH
Q ss_conf 889999999987978--9997487650107845131004337999999999986289889975887-----026888899
Q gi|254780439|r 29 SGTQACKALKEEGYR--IILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG-----QTALNTALS 101 (1162)
Q Consensus 29 s~~qa~~alke~Gi~--vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG-----qtalnl~~~ 101 (1162)
.+---..+|+|.|+. +|..+.-+.|+.- |-...--|-++. ...=..++++|.+++=.|+ +.++-++..
T Consensus 19 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~I~~~~~~----~~~~~~~~~~d~~~~R~~TPWv~~~~~~~~~r~ 93 (321)
T TIGR00768 19 DEKMLKEAAEERGIDYKVVTPPEIVLTFNQ-PAAFSIFYKEPR----KNKELALAELDVVIVRIGTPWVSSFRGLAVLRA 93 (321)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHEECCCC-CCCCEEECCCCC----CCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 999999999971795367604122003688-851001114541----001023117888998389975110268899999
Q ss_pred HHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88759628828757149989998605889999999987898886200023443333323333333444444443333222
Q gi|254780439|r 102 LKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181 (1162)
Q Consensus 102 L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1162)
| +.+|++++ =++.+|..+.|+-+=..+|.+.|+|+|.+.++...++ -|+
T Consensus 94 l------E~~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~Pqnf----------DRe-------------- 142 (321)
T TIGR00768 94 L------ESLGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNF----------DRE-------------- 142 (321)
T ss_pred H------HHCCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCC----------CCC--------------
T ss_conf 9------85896310-7069986214658999999958689873357366322----------435--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HHHCCCCC
Q ss_conf 11111123344444445544489999999998719---96999413267866451116999999999989--98579982
Q gi|254780439|r 182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIG---LPLIIRPSFTLGGTGGGIAYNRSEFLEIVENG--LHASPTTE 256 (1162)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG---yPvivRps~~lGG~G~~iv~n~eeL~~~~~~a--l~~s~~~~ 256 (1162)
-|.++|..+++++| ||+++||.++-.|++--.+.++.+++..++.- ++-+.-+-
T Consensus 143 ---------------------W~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V~l~~D~~~~~~~~e~~~~~~~~~~~~ 201 (321)
T TIGR00768 143 ---------------------WSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQYKV 201 (321)
T ss_pred ---------------------CCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCE
T ss_conf ---------------------89889999998731764245871785635426898506789999999997218833235
Q ss_pred EEEEEECC--CCEE--EEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79866449--9789--9999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r 257 VLIEESVL--GWKE--YELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES 332 (1162)
Q Consensus 257 vlIeksl~--g~kE--iE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v 332 (1162)
.||.|||. -.++ |=.=|+.|.-=-++.=|+-+.==.-=.|-|=-.. |+ +||+++ ++-|+|+++.||.
T Consensus 202 ~~~QeyI~Pv~~~grDIR~fVvGd~v~aA~~R~~~~~~w~~N~a~GG~a~--~~-~l~~e~----~~LA~ka~~a~g~-- 272 (321)
T TIGR00768 202 FLVQEYIKPVKPGGRDIRVFVVGDEVVAAIYRIITSGHWRTNLARGGKAE--PC-SLTEEI----EELAIKAAKALGL-- 272 (321)
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCC--CC-CCCHHH----HHHHHHHHHHHCC--
T ss_conf 78872011325789318999988920133354178830243554388212--45-258899----9999999999768--
Q ss_pred CCCEEEEEEECC-C--CEEEEEEECCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 764689999558-9--8499985044431035788876346147677
Q gi|254780439|r 333 GGANVQFAVNPK-N--GKMVVIEMNPRVSRSSALASKATGFPIAKIA 376 (1162)
Q Consensus 333 G~~nVQFAv~p~-~--~~~yvIEvNpR~sRssalaskatgypia~va 376 (1162)
+.|-|=+.-++. + +-+.|+||||=.. .--.+|+||..||..-
T Consensus 273 ~v~giDlle~~~r~dw~GL~V~EVN~~~~--f~~~~~~tgvniA~~l 317 (321)
T TIGR00768 273 DVAGIDLLESKDRDDWGGLLVLEVNANPE--FKNSVKTTGVNIAGKL 317 (321)
T ss_pred CEEEEEEEECCCCCCCCCCEEEEECCCCC--CCCCEEECCCCHHHHH
T ss_conf 34899776626854257837999849977--0011111167768999
No 114
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.26 E-value=2.8e-09 Score=91.22 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=239.3
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE-EEECCHHHHHHHHHHHCCCCCC
Q ss_conf 189972763020147665318999999999659806996068652112324586379-8416788999999874856782
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLY-FESLTEEDILEILRVEQQKGEL 698 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLY-FEplt~E~V~~I~~~E~p~g~~ 698 (1162)
+++++|+|-. .-..+..++.+|.+.+.+..-+..-.. ..+++-| +.-+..+.+..++++++|+-
T Consensus 1 ~~~l~g~g~~-----------g~~~~~~~~~lg~~~~~~d~~~~~p~~--~~~~~~~~~~~~d~~~~~~~~~~~~p~~-- 65 (407)
T TIGR01142 1 RVLLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYADAPAL--QVAHRSYVIDLLDGDALRAVIEREKPDY-- 65 (407)
T ss_pred CEEEECCCCC-----------CHHHHHHHHHCCCEEEEECCCCCCCHH--HHHHHHHHEECCCHHHHHHHHHHHCCCC--
T ss_conf 9466137653-----------314444454347126873354576213--3321111000026789999987506741--
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEECCCCHHHHCCCHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 27998445124668988888759---83861275203310286789998-887098668542112156655565536971
Q gi|254780439|r 699 VGIIVQFGGQTPLKLSKILEKNQ---IPILGTQPDSIDLAEDRDRFQKL-LMELDLNQPRNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 699 ~~vi~q~gGqt~~~la~~L~~~g---v~ilGts~~~Id~aEDR~~F~~l-l~~l~i~~p~~~~a~s~eea~~~a~~iGyP 774 (1162)
++.---.........+++.| ..++-+. .+...+-||+..+++ .++++++..+...+.++++....+..+|||
T Consensus 66 ---~~p~~~~~~~~~l~~~~~~gg~c~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p 141 (407)
T TIGR01142 66 ---IVPEIEAIATDALLELEAEGGECYTVVPTA-RATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFP 141 (407)
T ss_pred ---CCHHHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ---000244554666776652488246640352-0222121056778776776325422001110178899999860775
Q ss_pred EEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 67513444456541255489999999997521013221111223333333345577774567022012010010102307
Q gi|254780439|r 775 LLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQN 854 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg 854 (1162)
.+++|.....|++..++.+.+++...-..+..... ....-.....++++.|+.--.|+-.-.++.-
T Consensus 142 ~~~~p~~~~~g~g~~~~~~~~~~~~~w~~~~g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (407)
T TIGR01142 142 CVVKPVLSSSGKGQSVVRGPEDLEKAWEYAKGHQV--------------QEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 207 (407)
T ss_pred CEEHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCC--------------CCCCCCCCCCEEEEECCCCHHHHHHHEEEEC
T ss_conf 00012211466653000473456788766504310--------------1134555562455200131021100000002
Q ss_pred CC----EEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCC
Q ss_conf 98----49998520110215245762798168668999999999999999874133576247885128859998524444
Q gi|254780439|r 855 DQ----VIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRA 930 (1162)
Q Consensus 855 ~~----v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRa 930 (1162)
.. +..+.-+-|.+.- ||-.....|+.++....++....+.++...++-.|++.+++.++.+++|+-|+.||-
T Consensus 208 ~~~g~~~~~~~p~g~~~~~----g~~~~~w~p~~~~~~~~~~~~~~~~~~~~~lgg~g~~g~~~~~~g~~~~~~~~~p~p 283 (407)
T TIGR01142 208 DGNGPLTTFCAPIGHRQED----GDYHESWQPQELSEKALEEAKRIAKRVTDALGGYGLFGVELFVKGDEVWFSEVSPRP 283 (407)
T ss_pred CCCCCEEEECCCCCCCCCC----CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEECCCCCC
T ss_conf 7777501101322430015----540001462122178899999999888876346640014456516613542046676
Q ss_pred CCCHHHHHHHH--CCCHHHHHHHHHCCCCCC
Q ss_conf 56304567773--988999999998597210
Q gi|254780439|r 931 SRTVPFIAKAI--GFPVAKVAARIIAGESLD 959 (1162)
Q Consensus 931 SRtvPfvSKat--G~pl~~iAt~v~lG~~L~ 959 (1162)
.-|--.+-..- +..-..+-.+..+|-.+.
T Consensus 284 ~~~g~~~~~~~pp~~~~~~~~~~~~~g~p~~ 314 (407)
T TIGR01142 284 HDTGLVTLISQPPDLSEFALHLRAILGLPVP 314 (407)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 6651378740688720466544554236667
No 115
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.6e-09 Score=87.05 Aligned_cols=277 Identities=20% Similarity=0.271 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC----------CEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 6531899999999965980699606865211232458----------637984167889999998748567822799844
Q gi|254780439|r 636 EFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIA----------DRLYFESLTEEDILEILRVEQQKGELVGIIVQF 705 (1162)
Q Consensus 636 EFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~s----------DrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~ 705 (1162)
.+-+.|.....+.++.|++--++..+...+.-.--.+ --+-++++..++..... . ...++.-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~D~i~~R~ 86 (318)
T COG0189 14 IYKDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLD---E----LDVIIMRK 86 (318)
T ss_pred CCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC---C----CCEEEECC
T ss_conf 6554399998877860734899716531145133688886653221001012433310022203---6----72899737
Q ss_pred CCHH--HHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCC
Q ss_conf 5124--6689888887598386127520331028678999888709866854211215665556553-697167513444
Q gi|254780439|r 706 GGQT--PLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE-IGFPLLIRPSYV 782 (1162)
Q Consensus 706 gGqt--~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~-iGyPVLVRPSyV 782 (1162)
+.+. ....+..++..|+.++-.+ .+|..+.|+.....++.+.|+|.|++..+.+.+++..++++ .||||+++|.+.
T Consensus 87 ~~~~~~~~~~~~~~E~~G~~viN~p-~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~G 165 (318)
T COG0189 87 DPPFDFATRFLRLAERKGVPVINDP-QSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDG 165 (318)
T ss_pred CCHHHHHHHHHHHHHHCCCEEECCH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8604568999999987498687887-998763557999999996599999868965847889999974689889964788
Q ss_pred CCCCCCEEECCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEE
Q ss_conf 4565412554899-999999975210132211112233333333455777745670220120100101023079849998
Q gi|254780439|r 783 LGGRAMQIVYSEN-MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVG 861 (1162)
Q Consensus 783 LGG~~M~Iv~~~~-eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~g 861 (1162)
-+|++-..|.|.+ +|...++.... ...+++++.+||..+..-+.-++-.| ...++-
T Consensus 166 s~G~gV~~v~~~d~~l~~~~e~~~~----------------------~~~~~~ivQeyi~~~~~~~rrivv~~-~~~~~~ 222 (318)
T COG0189 166 SGGRGVFLVEDADPELLSLLETLTQ----------------------EGRKLIIVQEYIPKAKRDDRRVLVGG-GEVVAI 222 (318)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHC----------------------CCCCEEEEECCCCCCCCCEEEEEEEC-CEEEEE
T ss_conf 8866559943776569999998634----------------------55642986203476778739999989-999898
Q ss_pred -EECCCCHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCC-CH
Q ss_conf -520110215-----24576279816866899999999999999987413357624788512885999852444456-30
Q gi|254780439|r 862 -IIEHIEEAG-----IHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASR-TV 934 (1162)
Q Consensus 862 -imEHiE~aG-----VHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSR-tv 934 (1162)
-|..+-..| .|-| ....+..|++++. +.+.++|+.| --+..-|-++..++.+||+|+|+ |= -.
T Consensus 223 y~~~R~~~~~~~R~N~a~G---g~~e~~~l~~e~~----elA~kaa~~l-Gl~~~GVDiie~~~g~~V~EVN~--sP~~~ 292 (318)
T COG0189 223 YALARIPASGDFRSNLARG---GRAEPCELTEEEE----ELAVKAAPAL-GLGLVGVDIIEDKDGLYVTEVNV--SPTGK 292 (318)
T ss_pred EEEECCCCCCCCEEECCCC---CEECCCCCCHHHH----HHHHHHHHHH-CCCEEEEEEEEECCCEEEEEEEC--CCCCC
T ss_conf 7120047777520101157---5204536999999----9999999974-89479999997089629999868--96523
Q ss_pred HHHHHHHCCCHHHHHHHHH
Q ss_conf 4567773988999999998
Q gi|254780439|r 935 PFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 935 PfvSKatG~pl~~iAt~v~ 953 (1162)
.-+.+.+|++.+....+.+
T Consensus 293 ~~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 293 GEIERVTGVNIAGLIIDAI 311 (318)
T ss_pred CCHHHCCCCCHHHHHHHHH
T ss_conf 5214306976799999999
No 116
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.25 E-value=2.6e-09 Score=91.58 Aligned_cols=271 Identities=21% Similarity=0.257 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHCCCCCCCEEEEEC-----CCHHH
Q ss_conf 189999999996598--069960686521123245863798416-7889999998748567822799844-----51246
Q gi|254780439|r 639 YCCCHASFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESL-TEEDILEILRVEQQKGELVGIIVQF-----GGQTP 710 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEpl-t~E~V~~I~~~E~p~g~~~~vi~q~-----gGqt~ 710 (1162)
|.|=.-..++.+.|. ++|+.+.-+-|..- +--+.--|-++. ..+.. ++..+- ++.-+ ..+..
T Consensus 18 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~I~~~~~~~~~~~~-----~~~~d~----~~~R~~TPWv~~~~~ 87 (321)
T TIGR00768 18 YDEKMLKEAAEERGIDYKVVTPPEIVLTFNQ-PAAFSIFYKEPRKNKELA-----LAELDV----VIVRIGTPWVSSFRG 87 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHEECCCC-CCCCEEECCCCCCCCHHH-----HCCCCE----EEECCCCCCCCHHHH
T ss_conf 8999999999971795367604122003688-851001114541001023-----117888----998389975110268
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHHCC---CCEEEEC
Q ss_conf 6898888875983861275203310286789998887098668542112--------1566555655369---7167513
Q gi|254780439|r 711 LKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISH--------SVEHARLIACEIG---FPLLIRP 779 (1162)
Q Consensus 711 ~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~--------s~eea~~~a~~iG---yPVLVRP 779 (1162)
+-+++.|+.+|++.+=.| ++|..|.|+..=..+|.+-|+|+|.+..+. |.++|..+++++| ||++++|
T Consensus 88 ~~~~r~lE~~G~~~~N~s-~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~Kp 166 (321)
T TIGR00768 88 LAVLRALESLGVPVINSS-QAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLKP 166 (321)
T ss_pred HHHHHHHHHCCCEECCCH-HHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 899999985896310706-9986214658999999958689873357366322435898899999987317642458717
Q ss_pred CCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--CCEEEEEEEEEECCCE
Q ss_conf 44445654125548999999999752101322111122333333334557777456702201--2010010102307984
Q gi|254780439|r 780 SYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLS--DAMEIDVDALCQNDQV 857 (1162)
Q Consensus 780 SyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~--~a~EiEVDai~Dg~~v 857 (1162)
.+.-.|++-.-+.|+.+++..++. ++... -+.-.-.||-+|+. .....||=++.=|+.+
T Consensus 167 ~~GS~G~~V~l~~D~~~~~~~~e~-~~~~~------------------~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v 227 (321)
T TIGR00768 167 VFGSWGRLVSLARDKQAAETLLEH-FEQLN------------------GPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEV 227 (321)
T ss_pred CCCCCCCEEEEEECHHHHHHHHHH-HHHHC------------------CCCCCEEEEEEEECCCCCCCCEEEEEEECCCE
T ss_conf 856354268985067899999999-97218------------------83323578872011325789318999988920
Q ss_pred EEEEEECC-CCH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-----EEEEEEEC
Q ss_conf 99985201-102----152457627981686689999999999999998741335762478851288-----59998524
Q gi|254780439|r 858 IVVGIIEH-IEE----AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDG-----KIYILEVN 927 (1162)
Q Consensus 858 ~I~gimEH-iE~----aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~-----~iYVIEvN 927 (1162)
+ ++ |.+ +.+ +=+|-|=.+... .|++ ++++.|.|.+++|+. +.+=|=++-+++ -+-|+|||
T Consensus 228 ~-aA-~~R~~~~~~w~~N~a~GG~a~~~---~l~~----e~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN 297 (321)
T TIGR00768 228 V-AA-IYRIITSGHWRTNLARGGKAEPC---SLTE----EIEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVN 297 (321)
T ss_pred E-EE-EEECCCCCCHHHHHHCCCCCCCC---CCCH----HHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf 1-33-35417883024355438821245---2588----999999999999768-3489977662685425783799984
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 444563045677739889999999
Q gi|254780439|r 928 PRASRTVPFIAKAIGFPVAKVAAR 951 (1162)
Q Consensus 928 pRaSRtvPfvSKatG~pl~~iAt~ 951 (1162)
| |-.+-=.+|+||+++|..-.+
T Consensus 298 ~--~~~f~~~~~~tgvniA~~l~~ 319 (321)
T TIGR00768 298 A--NPEFKNSVKTTGVNIAGKLLD 319 (321)
T ss_pred C--CCCCCCCEEECCCCHHHHHHH
T ss_conf 9--977001111116776899997
No 117
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.19 E-value=1.7e-09 Score=92.98 Aligned_cols=119 Identities=16% Similarity=0.340 Sum_probs=96.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98445124668988888759838612752033102867899988870986685421121566555655369716751344
Q gi|254780439|r 702 IVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSY 781 (1162)
Q Consensus 702 i~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSy 781 (1162)
-..+||-+ +-|...|.+. ||.-+.-++.|+..-.++|...|+++|.+..+.+.+++..|++++| ||.|+|.-
T Consensus 269 ~l~~ggr~-i~creslSel------TSAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~~~~~~fl~~~G-~VVVKP~d 340 (547)
T TIGR03103 269 RLSLGGRS-IRCRESLSEL------TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG-AVVVKPVR 340 (547)
T ss_pred EEEECCEE-EEEECHHHHH------HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CEEECCCC
T ss_conf 97128906-8861202578------8899988740499999999973998999745699899999998739-99977687
Q ss_pred CCCCCCCEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 445654125-54899999999975210132211112233333333455777745670220120100101023
Q gi|254780439|r 782 VLGGRAMQI-VYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALC 852 (1162)
Q Consensus 782 VLGG~~M~I-v~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~ 852 (1162)
.--|+|-.+ +.++++++..+..|-. .+ ..|+||+|+. +.++-+-+|-
T Consensus 341 GnqGrGVtvnl~t~eev~~A~~~A~~---------------------~~--~~VIVE~fi~-G~D~RlLVIg 388 (547)
T TIGR03103 341 GEQGKGISVDVRTPDDLEAAIAKARQ---------------------FC--DRVLLERYVP-GEDLRLVVID 388 (547)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHHH---------------------HC--CCEEEEEEEC-CCCEEEEEEC
T ss_conf 88886158725999999999999997---------------------59--9579998406-9716999999
No 118
>KOG0237 consensus
Probab=99.04 E-value=1.3e-06 Score=70.16 Aligned_cols=442 Identities=19% Similarity=0.193 Sum_probs=259.5
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCEEEC-CCCCCCCEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 69999767754205054666888999999998-79789997487650107-84513100433799999999998628988
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKE-EGYRIILVNSNPATIMT-DPDLADATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke-~Gi~vVlVNsNpaTi~T-D~~~aD~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
-.|||||||.- -.--|..|++ --+.-|+|-|--+-+++ |...-+.+-|-+-..+.+.+--++.+..-
T Consensus 3 ~~vLviGsGgR-----------EHal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~l 71 (788)
T KOG0237 3 VNVLVIGSGGR-----------EHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINL 71 (788)
T ss_pred EEEEEECCCCH-----------HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 37999758842-----------7688887632875553898369887456751237556557655999999998746218
Q ss_pred EEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99758870268888998875962882875714998999860588999999998789888620002344333332333333
Q gi|254780439|r 86 ILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEE 165 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~ 165 (1162)
++++=- +-|+.-|. +.|.+-||...|++..+-.+-.++...+++|.+.|||+++
T Consensus 72 VvvGPE----~PL~~Gl~--~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~-------------------- 125 (788)
T KOG0237 72 VVVGPE----LPLVAGLA--DVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAK-------------------- 125 (788)
T ss_pred EEECCC----HHHHHHHH--HHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCE--------------------
T ss_conf 997873----26542356--6664058510174377777664178899889863998320--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 344444444333322211111123344444445544489999999998719-9699941326786645111699999999
Q gi|254780439|r 166 RENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTGGGIAYNRSEFLEI 244 (1162)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG~G~~iv~n~eeL~~~ 244 (1162)
+..+++.++|..|.++.+ .+++||+.----|.|--|+.|.+|-.++
T Consensus 126 ---------------------------------y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eA 172 (788)
T KOG0237 126 ---------------------------------YKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEA 172 (788)
T ss_pred ---------------------------------EEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCHHHHHHH
T ss_conf ---------------------------------26407879989999848985648960552457715740547999999
Q ss_pred HHHHHH--H--CCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEC-CCC----CCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 998998--5--799827986644997899999997289988999630-000----0010000101343373228988999
Q gi|254780439|r 245 VENGLH--A--SPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSI-ENL----DPMGVHTGDSITVAPALTLTDKEYQ 315 (1162)
Q Consensus 245 ~~~al~--~--s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~-En~----dp~GiHtGDSi~vaP~qTL~d~~~q 315 (1162)
+.+-+. . +-..+|.||++|+| .|+-+-.+-|++ ++.-.--- +|- -.-|-+||--=+-+|+.-.+.+...
T Consensus 173 v~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~ 250 (788)
T KOG0237 173 VDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLD 250 (788)
T ss_pred HHHHHHHHHHCCCCCEEEHHHHCCC-CEEEEEEEECCC-CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9999854441356645861123076-257899985573-02338851002553078999988886556547756989999
Q ss_pred HHHHH----HHHHHHH--HCCCCCCCEEEEEEECCCCEEEEEEECCCCCHH--HHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999----9999987--183457646899995589849998504443103--578887634614767776413446101
Q gi|254780439|r 316 LMRNA----AIAVLKE--IGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS--SALASKATGFPIAKIAAKLAVGYTLDE 387 (1162)
Q Consensus 316 ~LR~~----a~kI~r~--lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRs--salaskatgypia~vaakl~~G~~L~e 387 (1162)
...++ +++=++. ..+ +|..---+.+.+++ =.|+|-|-|+-.- -++...--- .++.|-- -+.--+|+.
T Consensus 251 ~v~~~I~~~Tv~Gm~~eg~~y-~GVLfaGlMl~k~~--P~vLEfN~RFGDPEtQv~l~lLes-DL~evi~-a~~~~~L~~ 325 (788)
T KOG0237 251 TVQSTIIEPTVDGMAEEGIPY-VGVLFAGLMLTKDG--PKVLEFNVRFGDPETQVLLPLLES-DLAEVIL-ACCNGRLDT 325 (788)
T ss_pred HHHHHHHHHHHHHHHHCCCCE-EEEEEEEEEEECCC--CCEEEEECCCCCCHHHHHHHHHHH-HHHHHHH-HHHHCCCCC
T ss_conf 999887667665787639962-56876546883599--607998401389206565987876-7999999-986187455
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCC--------CCCCCCC------CCCCCCCCC---------CHHHHCCCCH
Q ss_conf 3577567777666577677689854420121--------1477666------667731001---------0022226768
Q gi|254780439|r 388 LGNDITGGKTPASFEPSIDYIVTKIPRFTFE--------KFPGSDV------TLTTSMKSV---------GEVMAIGRTF 444 (1162)
Q Consensus 388 i~~~~~~~~~~a~~Ep~ldyv~vK~p~f~f~--------kf~~~~~------~Lgt~MkS~---------GEvm~iGr~f 444 (1162)
+... | .+.+|+- ||+-.--+|-+ -+|.+++ +-||.-.|- =.|-+.+.+.
T Consensus 326 ~~i~-w-~~~sa~~------VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~vvTNGGRVLsVTA~~~~L 397 (788)
T KOG0237 326 VDIV-W-SKKSAVT------VVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDL 397 (788)
T ss_pred CCCC-C-CCCCEEE------EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEECCCHH
T ss_conf 6754-1-1461489------999058989877687630167666787626986256302452475386599997167309
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH-------HCCCCHHHHHHHHCCCHHH
Q ss_conf 999998997503787676655766766458989999976079824899999999-------7389788998771889899
Q gi|254780439|r 445 AESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRSAISIPCPDRLRTVAQAL-------RLGVSVEETHQSSNIDPWF 517 (1162)
Q Consensus 445 ~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l~~~L~~p~~~Rl~~i~eAl-------r~G~sv~ei~elT~Id~wF 517 (1162)
++|.++|-..+.. ..|. .....+| + ..|-|...+.= ..|.++|.=.+ |
T Consensus 398 ~sA~e~Ayk~v~~--I~Fs-----g~~yRkD---I--------~~ra~~~~~~st~sLTYkdSGV~id~Gn~-------l 452 (788)
T KOG0237 398 ESAAETAYKAVQV--ISFS-----GKFYRKD---I--------AWRAFKNKDDSTPSLTYKDSGVDIDAGNE-------L 452 (788)
T ss_pred HHHHHHHHHHHEE--EEEC-----CCCCCCH---H--------HHHHCCHHHCCCCCCCCCCCCCCCCCHHH-------H
T ss_conf 9999999877618--7305-----5221103---4--------65530211037764211256755115488-------9
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999999999875303760-2799998653379988999885
Q gi|254780439|r 518 IQQIKMIVDVEHRIREHGLPK-DFQNLQAIKAMGFSDARLSILS 560 (1162)
Q Consensus 518 l~~i~~iv~~e~~l~~~~~~~-~~~~l~~aK~~GFSD~~IA~l~ 560 (1162)
.++|+.++.--.+--. .-+. ..--|...|+.||+|.+++.-+
T Consensus 453 VqrIk~l~k~T~rpG~-~~diGGFgglfdLk~ag~~d~~Lv~~t 495 (788)
T KOG0237 453 VQRIKPLVKGTRRPGA-DADIGGFGGLFDLKQAGFKDPLLVSGT 495 (788)
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCCCEEEEHHHCCCCCCEEEEEC
T ss_conf 9999986121558874-246666210000543588885688732
No 119
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.00 E-value=4.9e-09 Score=89.31 Aligned_cols=279 Identities=20% Similarity=0.300 Sum_probs=186.7
Q ss_pred CCCCEEECCCCHHHHHHHHHHHCCC-----EEEECCCCCHHHHHHHHHHHCCCHHHHCCE---E-----ECCCHHHHHHH
Q ss_conf 1310043379999999999862898-----899758870268888998875962882875---7-----14998999860
Q gi|254780439|r 60 LADATYTEPITPEVVAKIIEKERPD-----AILPTTGGQTALNTALSLKRMGVLDRYGVE---M-----IGAKPETIDKA 126 (1162)
Q Consensus 60 ~aD~vY~ePlt~e~v~~Ii~~E~pD-----aIlp~~GGqtalnl~~~L~e~gil~~~~v~---~-----lG~~~~~I~~~ 126 (1162)
+.+.+.+.|=|--.|..-.++.=|- +-|.+|| ||.+ + =-|+.=+.+.+
T Consensus 156 L~~~~~LGPST~~Iv~eA~~R~IP~~rL~~g~~vqlG-------------------YG~~qkri~at~td~Ts~iav~iA 216 (876)
T TIGR02068 156 LVADASLGPSTAAIVKEAEKRGIPYMRLSAGSLVQLG-------------------YGSKQKRIQATETDRTSAIAVEIA 216 (876)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECC-------------------CCCCCEEEEEECCCCCCEEEHHHH
T ss_conf 9973367987789999997378986873376445605-------------------775430343200257650101222
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 58899999999878988862000234433333233333334444444433332221111112334444444554448999
Q gi|254780439|r 127 EDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMA 206 (1162)
Q Consensus 127 edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 206 (1162)
.|+++=|++|+..|+|||+...+ ++.+
T Consensus 217 ~DK~lTK~iL~~~GvPVP~G~~~-----------------------------------------------------~~~~ 243 (876)
T TIGR02068 217 CDKDLTKKILKAAGVPVPEGTVV-----------------------------------------------------QSAE 243 (876)
T ss_pred CCHHHHHHHHHHCCCCCCCCCHH-----------------------------------------------------HHHH
T ss_conf 36378999998478988887366-----------------------------------------------------7789
Q ss_pred HHHHHHHHCC-CCEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEE-----------
Q ss_conf 9999998719-969994132678664511-169999999999899857998279866449978999999-----------
Q gi|254780439|r 207 VAVQALDEIG-LPLIIRPSFTLGGTGGGI-AYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEM----------- 273 (1162)
Q Consensus 207 ea~~~a~~iG-yPvivRps~~lGG~G~~i-v~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eV----------- 273 (1162)
+|.++|+++| |||+|||--+-.|+|-.+ ..+.+|.+.+.+.|.+.|....|.||||+.| +|+=+-|
T Consensus 244 ~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~~~Sk~~~ViVEr~i~G-~dhRlLVVg~k~VAvA~R 322 (876)
T TIGR02068 244 EAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAKEESKTSEVIVERYIKG-RDHRLLVVGGKLVAVAER 322 (876)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCEEEEEECCEEEEEECC
T ss_conf 9999999718996899517799874378407774889999999986078660689876427-623899998968998618
Q ss_pred -----EEECCCCEEE-EEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH------------HCCCCCCC
Q ss_conf -----9728998899-96300000010000101343373228988999999999999987------------18345764
Q gi|254780439|r 274 -----MRDIKGNCIV-VCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE------------IGVESGGA 335 (1162)
Q Consensus 274 -----irD~~gn~i~-v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~------------lgi~vG~~ 335 (1162)
+.|+.-+.-= |+...|-||.+=.+.|... -.-+|.+--++.|+..-..+-.= =|+-+|+
T Consensus 323 ~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~L--tki~~D~~~~~~L~kqG~~ldsVp~kG~~V~Lr~~ANLSTGG- 399 (876)
T TIGR02068 323 VPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPL--TKIRLDSVAKLVLAKQGLTLDSVPAKGRIVYLRATANLSTGG- 399 (876)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CCEEHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCC-
T ss_conf 88868838720076640576467778888667788--834330799999985497511545409788863247744587-
Q ss_pred EEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68999955898499985044431035788876346147677764134461013577567777666577677689854420
Q gi|254780439|r 336 NVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRF 415 (1162)
Q Consensus 336 nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~ldyv~vK~p~f 415 (1162)
.|+|-.| |+-|-.--....|+|+-|-.||=| -..-++|..|... .+-++|-+.-
T Consensus 400 ---~A~DrTD------eiHP~~~~~a~~aAk~iGLDiaG~------D~v~~di~~PL~~----------~~G~iVEVNA- 453 (876)
T TIGR02068 400 ---VAIDRTD------EIHPENIAIAVRAAKIIGLDIAGV------DVVTEDISKPLRD----------TDGAIVEVNA- 453 (876)
T ss_pred ---EEEECCC------CCCHHHHHHHHHHHHEEEEEECCE------EECCCCCCCCHHH----------CCCEEEEEEC-
T ss_conf ---3162257------538458999987520000012122------2003100037454----------5972999856-
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH
Q ss_conf 121147766666773100100222267689999989
Q gi|254780439|r 416 TFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKA 451 (1162)
Q Consensus 416 ~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KA 451 (1162)
-||---+|.|. -|.+|+..+|..--
T Consensus 454 ----aPGlrMH~~PS-------~G~pR~Va~Ai~d~ 478 (876)
T TIGR02068 454 ----APGLRMHLAPS-------QGKPRNVAKAIVDM 478 (876)
T ss_pred ----CCCHHHCCCCC-------CCCCCCCCHHHHHH
T ss_conf ----76634446777-------74698710268752
No 120
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=98.95 E-value=2.1e-07 Score=76.37 Aligned_cols=255 Identities=18% Similarity=0.199 Sum_probs=171.7
Q ss_pred HHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 999996598--069960686521123245863798416788999999874856782279984451246689888887598
Q gi|254780439|r 645 SFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQI 722 (1162)
Q Consensus 645 ~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv 722 (1162)
..+|+++|+ ++|++ -.+-+-|...+.. .++. .-.+++=..+..-++-.|.-++..|+
T Consensus 16 ~e~l~~lg~~v~~i~~------------~~~~~~~~d~~i~------~~~~---~dv~i~R~VS~~R~L~~a~~~E~~G~ 74 (289)
T TIGR02144 16 LEELEKLGLQVRVIYV------------PELALPFGDLGIK------ELED---LDVAIIRNVSQSRALYSAFLLEAVGV 74 (289)
T ss_pred HHHHHHHCCCCEEEEC------------CCEEECCCCCCCC------HHCC---CCEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 9999872897326620------------3402207885630------0037---55689830345679999999984897
Q ss_pred EEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHH
Q ss_conf 38612752033102867899988870986685421121566555655369716751344445654125548999999999
Q gi|254780439|r 723 PILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLL 802 (1162)
Q Consensus 723 ~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~ 802 (1162)
+.+=.+ ++|-.++|+-.=.-.|.+-|||+|+|.++.+-++|++.++++||||+++|...-=||--.-+.|.++++.+++
T Consensus 75 ~~iN~~-~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~~~~~llE 153 (289)
T TIGR02144 75 PTINSS-HAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKDELESLLE 153 (289)
T ss_pred EEECCH-HHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf 152775-8987504618899999966788983589828689999999708988970888843788764037889889999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCC----CCCEEE
Q ss_conf 7521013221111223333333345577774567022012010010102307984999852011021524----576279
Q gi|254780439|r 803 DTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIH----SGDSAC 878 (1162)
Q Consensus 803 ~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVH----SGDS~~ 878 (1162)
.- +.. .-+.-+==+|.+|+. -.+-|+=+++=|+. .+.||=...+|.+=- -|=-
T Consensus 154 h~-e~~------------------~~~~~~~~y~QEfi~-KPgRDIR~fViGd~-~~~AIYR~~~P~~W~TNtArGG~-- 210 (289)
T TIGR02144 154 HK-EVL------------------GGSQLKLYYVQEFIN-KPGRDIRVFVIGDE-AIAAIYRYSEPNHWRTNTARGGK-- 210 (289)
T ss_pred HH-HHH------------------CCCCCCEEEEEEEEC-CCCCEEEEEEECCC-CEEEEEECCCCCCHHHHHHCCCC--
T ss_conf 99-986------------------797633379998871-88960899999797-31678833885302556305884--
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCC-----EEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 81686689999999999999998741335762478851-288-----599985244445630456777398899999999
Q gi|254780439|r 879 SLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDG-----KIYILEVNPRASRTVPFIAKAIGFPVAKVAARI 952 (1162)
Q Consensus 879 v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~-----~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v 952 (1162)
.-|-.++ +.+++.|.|-+++++.- ..=|=..= ++. -+=|+|+||= =.+==+-.+||+++++.-++-
T Consensus 211 -A~P~~~~----~e~~~La~kA~~avgg~-~~~iDi~Es~~rqndW~GlLV~EVN~~--~EFKN~~rvTGvNva~~l~~y 282 (289)
T TIGR02144 211 -AEPCKID----EEVEELAVKAAEAVGGE-VVGIDIVESKRRQNDWGGLLVNEVNGV--PEFKNTVRVTGVNVAEKLVEY 282 (289)
T ss_pred -CCCCCCC----HHHHHHHHHHHHHHCCE-EEEEEEEECCCCCCCCCCEEEEEECCC--CCCCCCEEECCCCHHHHHHHH
T ss_conf -4788768----76899999999997882-789988643344544378689735689--772785777474537899999
No 121
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.94 E-value=1.2e-07 Score=78.30 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=178.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCC-------EEECCCC-CCCCEEECCCCHHHHHHHHH
Q ss_conf 999976775420505466688899999999879789997-48765-------0107845-13100433799999999998
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILV-NSNPA-------TIMTDPD-LADATYTEPITPEVVAKIIE 79 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlV-NsNpa-------Ti~TD~~-~aD~vY~ePlt~e~v~~Ii~ 79 (1162)
-|+|||+--.. .--.|.+-++.+-+-++ ++-|+ .++|... .-|. =-..++.+..+
T Consensus 5 gviilGgahgt-----------lalARSfg~~~vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~-----gaiafLrd~Ae 68 (415)
T COG3919 5 GVIILGGAHGT-----------LALARSFGEEFVPVLALSADGPLPTYSRIVRVTTHWNGPHDE-----GAIAFLRDFAE 68 (415)
T ss_pred CEEEECCCCHH-----------HHHHHHHCCCCCEEEEEECCCCCCCHHHHHEEEECCCCCCCC-----CHHHHHHHHHH
T ss_conf 66997465016-----------898876140125179984698886444431010004899852-----09999999876
Q ss_pred HHCCCEEEECCCCCHHHHHH----HHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 62898899758870268888----99887596288287571499899986058899999999878988862000234433
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTA----LSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~----~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
++.-.+-+.--+|..-..|+ .+|++- .++.=++-...+..+++-+|.+.+.++|+|+|+...++
T Consensus 69 khglkg~LLva~GDgev~lvSq~reeLSa~-------f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~----- 136 (415)
T COG3919 69 KHGLKGYLLVACGDGEVLLVSQYREELSAF-------FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVN----- 136 (415)
T ss_pred HCCCCCEEEEECCCCEEEEHHHHHHHHHHH-------HCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEC-----
T ss_conf 147673599963883066257569999887-------65778738999998608288888998199976067723-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC----
Q ss_conf 3332333333344444444333322211111123344444445544489999999998719969994132678664----
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTG---- 231 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G---- 231 (1162)
|..+ ..+.++-||||+||-.++|-.-
T Consensus 137 ------------------------------------------------S~~d--~~~~el~FPvILKP~mgg~~~~~ara 166 (415)
T COG3919 137 ------------------------------------------------SEID--TLVDELTFPVILKPGMGGSVHFEARA 166 (415)
T ss_pred ------------------------------------------------CHHH--HHHHHEEEEEEECCCCCCCCEEEHHH
T ss_conf ------------------------------------------------1443--21231440388617888751001010
Q ss_pred -CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEE--EEEEECCCCEEEEEE----CCCCCCCCCCCCEEEEEC
Q ss_conf -5111699999999998998579982798664499789999--999728998899963----000000100001013433
Q gi|254780439|r 232 -GGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYEL--EMMRDIKGNCIVVCS----IENLDPMGVHTGDSITVA 304 (1162)
Q Consensus 232 -~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~--eVirD~~gn~i~v~~----~En~dp~GiHtGDSi~va 304 (1162)
--.+.+.+||+.++..+...-+-.+|.|.++|-|--|=-+ -.+-|+. .-+.-|. ++.-.|-|+-+---++
T Consensus 167 Ka~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g-~pvaeftarr~rqyPvdfgytst~vev-- 243 (415)
T COG3919 167 KAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKG-HPVAEFTARRLRQYPVDFGYTSTVVEV-- 243 (415)
T ss_pred HEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHCC-CCHHHHHCCHHHCCCCCCCCCCEEEEE--
T ss_conf 01431677999999999887439972588770579982232098898579-834644234222188654645279995--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHH
Q ss_conf 7322898899999999999998718345764689999558984999850444310357888763461476
Q gi|254780439|r 305 PALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAK 374 (1162)
Q Consensus 305 P~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~ 374 (1162)
.| -|++-+++.++...++. +|..||+|-.||.++.|.+++||||--|++-|.+- .||.+..
T Consensus 244 -----vD--n~Q~i~aar~~L~si~h-tGlvevefK~D~RDGs~KlldvNpRpw~wfgl~ta-aG~nLg~ 304 (415)
T COG3919 244 -----VD--NQQVIQAARDFLESIEH-TGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVTA-AGYNLGR 304 (415)
T ss_pred -----CC--CHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEC-CCCCCCC
T ss_conf -----28--28999999999986312-55478998756877724677625887304547740-4545301
No 122
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.89 E-value=2.7e-06 Score=67.66 Aligned_cols=258 Identities=24% Similarity=0.314 Sum_probs=154.4
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEECCCCCCCCEEECCCCHHHHHHHHH-HHCCCEE
Q ss_conf 9999767754205054666888999999998797899974876-5010784513100433799999999998-6289889
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP-ATIMTDPDLADATYTEPITPEVVAKIIE-KERPDAI 86 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp-aTi~TD~~~aD~vY~ePlt~e~v~~Ii~-~E~pDaI 86 (1162)
+|-++|| -|+-|.|+..|++|++|++|-..- +..=+.+..+|++.+..=-.+.+ ++-+ .-+-++|
T Consensus 20 ~I~tl~S------------HSALqIl~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~d~f~di~-~~q~~L~~~NaI 86 (356)
T PRK13278 20 TIATIGS------------HSSLQILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIVDSFSDIL-EIQEELREMNAI 86 (356)
T ss_pred EEEEEEC------------HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEECCHHHHH-HHHHHHHHCCEE
T ss_conf 8999844------------259888532877399579996699745345477642799947689999-999999878969
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97588702688889988759628828757149989998605-88999999998789888620002344333332333333
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAE-DRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEE 165 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~e-dR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~ 165 (1162)
+.--|.-++ -+.-+.+ +++.|.+.|.. .|-+.| ||.+=+++|++.|+|.|+..
T Consensus 87 ~IPhgSfv~-----Y~G~~~i-E~~~VP~FGNR--~lLrwEs~r~~~~~lLe~Agi~~Pk~~------------------ 140 (356)
T PRK13278 87 VIPHGSFVA-----YLGLENV-EEFKVPMFGNR--EILRWESDRDKERKLLEGAGIRIPRKY------------------ 140 (356)
T ss_pred EECCCCEEE-----EECHHHH-HHCCCCCCCCH--HHHHHHHCHHHHHHHHHHCCCCCCEEC------------------
T ss_conf 964888589-----8368888-50888820587--786651030789999986799987115------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34444444433332221111112334444444554448999999999871996999413267866451116999999999
Q gi|254780439|r 166 RENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIV 245 (1162)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~ 245 (1162)
+-.++|-=|||||..-.-||+|=-+|.|.+||.+-.
T Consensus 141 --------------------------------------------~~PeeIDr~VIVK~~gAkggrGyF~a~s~~ef~~k~ 176 (356)
T PRK13278 141 --------------------------------------------EDPEDIDGPVIVKLPGAKGGRGYFIASSPEEFWEKI 176 (356)
T ss_pred --------------------------------------------CCHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHH
T ss_conf --------------------------------------------895557852699746777774589957989999999
Q ss_pred HHHHHH---CCCCCEEEEEECCCCE------------EEEEEEE--EECCCCEEEEEECC-------CCCCCCCCCCEEE
Q ss_conf 989985---7998279866449978------------9999999--72899889996300-------0000100001013
Q gi|254780439|r 246 ENGLHA---SPTTEVLIEESVLGWK------------EYELEMM--RDIKGNCIVVCSIE-------NLDPMGVHTGDSI 301 (1162)
Q Consensus 246 ~~al~~---s~~~~vlIeksl~g~k------------EiE~eVi--rD~~gn~i~v~~~E-------n~dp~GiHtGDSi 301 (1162)
++-.+. ....+..||+|+.|.. ++|+--| |... |.=-+.-+- +++|-=+-+|-.
T Consensus 177 ~~l~~~g~i~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~es-niDg~~rlPa~~qle~~~~p~~vvvGn~- 254 (356)
T PRK13278 177 DRLKEKGLIEDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYES-NIDGLVRIPAKDQLEAGIDPTYVVTGNI- 254 (356)
T ss_pred HHHHHCCCCCCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEE-CCHHHCCCCHHHHHHCCCCCCEEEECCC-
T ss_conf 99886275455544279998347412312203520066136631003440-5223204887888536899846998885-
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHH---H---CCCCCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 43373228988999999999999987---1---83457646899995589849998504443
Q gi|254780439|r 302 TVAPALTLTDKEYQLMRNAAIAVLKE---I---GVESGGANVQFAVNPKNGKMVVIEMNPRV 357 (1162)
Q Consensus 302 ~vaP~qTL~d~~~q~LR~~a~kI~r~---l---gi~vG~~nVQFAv~p~~~~~yvIEvNpR~ 357 (1162)
+.+|-..-..+.-+.+-+.+++ + |+ +|....|.+++ .+.+++|-|+.+|.
T Consensus 255 ----p~vlRESLL~~vf~~ge~fV~a~k~l~~PG~-iGPFcLq~vvt-~~le~vvFevS~RI 310 (356)
T PRK13278 255 ----PLVLRESLLPQVFEYGERFVEASKELVGPGM-IGPFCLESVIT-DDLEIVVFEISARI 310 (356)
T ss_pred ----CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEC-CCCEEEEEEEECCC
T ss_conf ----3244176579999999999999997469986-34543668986-98609999985431
No 123
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.89 E-value=3.2e-07 Score=74.95 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=181.1
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 741899727630201476653189999999996598069960-6865211232458637984167889999998748567
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMIN-CNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN-~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
+=+|-+||| -|+-|-++..|++|++|+.|- -..|..=+.|...|.+..-. .+.+++++.+.=.-.
T Consensus 18 ~i~I~tl~S------------HSALqIl~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~d-~f~di~~~q~~L~~~- 83 (356)
T PRK13278 18 NITIATIGS------------HSSLQILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIVD-SFSDILEIQEELREM- 83 (356)
T ss_pred CCEEEEEEC------------HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEEC-CHHHHHHHHHHHHHC-
T ss_conf 538999844------------259888532877399579996699745345477642799947-689999999999878-
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCC-CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 8227998445124668988888759838612752033102-867899988870986685421121566555655369716
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAE-DRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPL 775 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aE-DR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPV 775 (1162)
..+++--|-.++--=...+++..++++|.- .+-..| ||.+=.++|.+.||+.|+-- +-.++|.=||
T Consensus 84 --NaI~IPhgSfv~Y~G~~~iE~~~VP~FGNR--~lLrwEs~r~~~~~lLe~Agi~~Pk~~---------~~PeeIDr~V 150 (356)
T PRK13278 84 --NAIVIPHGSFVAYLGLENVEEFKVPMFGNR--EILRWESDRDKERKLLEGAGIRIPRKY---------EDPEDIDGPV 150 (356)
T ss_pred --CEEEECCCCEEEEECHHHHHHCCCCCCCCH--HHHHHHHCHHHHHHHHHHCCCCCCEEC---------CCHHHCCCCE
T ss_conf --969964888589836888850888820587--786651030789999986799987115---------8955578526
Q ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE--
Q ss_conf 751344445654125548999999999752101322111122333333334557777456702201201001010230--
Q gi|254780439|r 776 LIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ-- 853 (1162)
Q Consensus 776 LVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D-- 853 (1162)
+|+..=--||||--++.|.+|+.+-+++-++.. -+.......|++|+.|+. +-......
T Consensus 151 IVK~~gAkggrGyF~a~s~~ef~~k~~~l~~~g------------------~i~d~~~~~IeEyv~G~~-~~~~yFySpl 211 (356)
T PRK13278 151 IVKLPGAKGGRGYFIASSPEEFWEKIDRLKEKG------------------LIEDVEKYIIQEYVVGVP-YYIHYFYSPI 211 (356)
T ss_pred EEEECCCCCCCEEEEECCHHHHHHHHHHHHHCC------------------CCCCCCCCEEEEEECCCE-EEHHHCCCCC
T ss_conf 997467777745899579899999999988627------------------545554427999834741-2312203520
Q ss_pred CCCEEEEEEECCCC---------------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCEE
Q ss_conf 79849998520110---------------2152457627981686689999999999999998741------33576247
Q gi|254780439|r 854 NDQVIVVGIIEHIE---------------EAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGAL------NVIGLINV 912 (1162)
Q Consensus 854 g~~v~I~gimEHiE---------------~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L------~v~G~~NI 912 (1162)
.+.+-+.|+=.+.| .++++..=-.+=.-|-++.+...+++-++..+..++- |+.|||-+
T Consensus 212 ~~~lEllg~D~R~esniDg~~rlPa~~qle~~~~p~~vvvGn~p~vlRESLL~~vf~~ge~fV~a~k~l~~PG~iGPFcL 291 (356)
T PRK13278 212 KNRLELLGIDRRYESNIDGLVRIPAKDQLEAGIDPTYVVTGNIPLVLRESLLPQVFEYGERFVEASKELVGPGMIGPFCL 291 (356)
T ss_pred CCCEEEEECCEEEEECCHHHCCCCHHHHHHCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 06613663100344052232048878885368998469988853244176579999999999999997469986345436
Q ss_pred EEEE-CCCEEEEEEECCCC-CCCHHHH
Q ss_conf 8851-28859998524444-5630456
Q gi|254780439|r 913 QYAI-KDGKIYILEVNPRA-SRTVPFI 937 (1162)
Q Consensus 913 Qfa~-kd~~iYVIEvNpRa-SRtvPfv 937 (1162)
|.++ +|-+++|-|+.+|- .-|-+|+
T Consensus 292 q~vvt~~le~vvFevS~RIv~GTn~~~ 318 (356)
T PRK13278 292 ESVITDDLEIVVFEISARIVAGTNLYM 318 (356)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCCCC
T ss_conf 689869860999998543138988765
No 124
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.84 E-value=1e-06 Score=71.05 Aligned_cols=264 Identities=25% Similarity=0.289 Sum_probs=164.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-EEECCCCCCCCE-EECCCCHHHHHHHHH-HHCCCE
Q ss_conf 99997677542050546668889999999987978999748765-010784513100-433799999999998-628988
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA-TIMTDPDLADAT-YTEPITPEVVAKIIE-KERPDA 85 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa-Ti~TD~~~aD~v-Y~ePlt~e~v~~Ii~-~E~pDa 85 (1162)
+|-.+|| -|+-|.++..|++|++||.|-.+-- ..-+-+..||+. +.+--.-....+|.+ .-+-++
T Consensus 20 ~Iat~gS------------HSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~n~ 87 (361)
T COG1759 20 TIATIGS------------HSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELRELNA 87 (361)
T ss_pred EEEEEEC------------CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCHHHEEEEECHHHHHHHHHHHHHHHHCCE
T ss_conf 9998515------------0478886337760872799983576236765020234889520477764899999987584
Q ss_pred EEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99758870268888998875962882875714998999860588999999998789888620002344333332333333
Q gi|254780439|r 86 ILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEE 165 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~ 165 (1162)
|+.--|.-. .-+.-+|+.+++-|++.|...---+ -+||.+-.++|++.|++.|+-.
T Consensus 88 I~IP~gSfv-----~Y~G~d~ie~~~~vP~fGnR~lLrw-E~~~~~~~~lLekAgi~~P~~~------------------ 143 (361)
T COG1759 88 IFIPHGSFV-----AYVGYDGIENEFEVPMFGNRELLRW-EEDRKLEYKLLEKAGLRIPKKY------------------ 143 (361)
T ss_pred EEECCCCEE-----EEECCHHHHHCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCCCC------------------
T ss_conf 994278647-----8853144644114661166767530-0033568999997499988566------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34444444433332221111112334444444554448999999999871996999413267866451116999999999
Q gi|254780439|r 166 RENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIV 245 (1162)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~ 245 (1162)
++ .++|-=|||||.--.-||+|--+|.+.+||.+..
T Consensus 144 -------------------------------------~~-------PeeIdr~ViVK~pgAkggRGyFiA~s~eef~ek~ 179 (361)
T COG1759 144 -------------------------------------KS-------PEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKA 179 (361)
T ss_pred -------------------------------------CC-------HHHCCCCEEEECCCCCCCCEEEEECCHHHHHHHH
T ss_conf -------------------------------------99-------6786873698557766774379976989999999
Q ss_pred HHHHHHC-----CCCCEEEEEECCCCE---EEEEEEEEECCCCEEEEEEC-----CCCC-----CCCCCCCE----EEEE
Q ss_conf 9899857-----998279866449978---99999997289988999630-----0000-----01000010----1343
Q gi|254780439|r 246 ENGLHAS-----PTTEVLIEESVLGWK---EYELEMMRDIKGNCIVVCSI-----ENLD-----PMGVHTGD----SITV 303 (1162)
Q Consensus 246 ~~al~~s-----~~~~vlIeksl~g~k---EiE~eVirD~~gn~i~v~~~-----En~d-----p~GiHtGD----Si~v 303 (1162)
++-+..- ...++.||+|+.|.. ++=+-.++|. .=++ +| -|+| |.+-|--- +-+|
T Consensus 180 erl~~~gvi~~Edlkna~IeEYv~G~~f~~~yFyS~i~~~---lEl~-g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv 255 (361)
T COG1759 180 ERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDR---LELL-GIDRRYESNLDGLVRLPAKDQLELNLEPTYVV 255 (361)
T ss_pred HHHHHCCCCCHHHHHHCEEEEEEECCCEEEEEEECCCCCC---EEEE-EEEHHEECCCHHHCCCCHHHHHHCCCCCEEEE
T ss_conf 9998728765344321354477506601345520234570---4576-30020131621211578789974589952899
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf --3732289889999999999999871------834576468999955898499985044431
Q gi|254780439|r 304 --APALTLTDKEYQLMRNAAIAVLKEI------GVESGGANVQFAVNPKNGKMVVIEMNPRVS 358 (1162)
Q Consensus 304 --aP~qTL~d~~~q~LR~~a~kI~r~l------gi~vG~~nVQFAv~p~~~~~yvIEvNpR~s 358 (1162)
-=+.||-..-.++.-+++-+..++- |+ +|....|.++++ +-++||-||.||.-
T Consensus 256 ~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~-iGpFcLq~i~t~-dl~~vVFevS~Ri~ 316 (361)
T COG1759 256 VGNIPVVLRESLLPKVFEMGERFVEATKELVPPGI-IGPFCLQTIVTD-DLEFVVFEVSARIV 316 (361)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCEEEEEEECC-CCCEEEEEEECCCC
T ss_conf 87851324777789999999999999987459985-132002001468-75189999753104
No 125
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.84 E-value=1.4e-07 Score=77.79 Aligned_cols=166 Identities=25% Similarity=0.339 Sum_probs=119.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999998789888620002344333332333333344444444333322211111123344444445544489999999
Q gi|254780439|r 131 LFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQ 210 (1162)
Q Consensus 131 ~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~ 210 (1162)
..+++|.+.|+|+|++.+++ |.+||.+
T Consensus 6 qaK~ll~~~gIpvp~g~~~~-----------------------------------------------------~~~ea~~ 32 (202)
T pfam08442 6 QAKEILAKYGVPVPRGEVAF-----------------------------------------------------SPEEAEE 32 (202)
T ss_pred HHHHHHHHCCCCCCCEEEEC-----------------------------------------------------CHHHHHH
T ss_conf 99999998599899915969-----------------------------------------------------9999999
Q ss_pred HHHHCCCC-EEEEECCCCCCCC--CC--CCCCHHHHHHHHHHHHH-----------HCCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 99871996-9994132678664--51--11699999999998998-----------579982798664499789999999
Q gi|254780439|r 211 ALDEIGLP-LIIRPSFTLGGTG--GG--IAYNRSEFLEIVENGLH-----------ASPTTEVLIEESVLGWKEYELEMM 274 (1162)
Q Consensus 211 ~a~~iGyP-vivRps~~lGG~G--~~--iv~n~eeL~~~~~~al~-----------~s~~~~vlIeksl~g~kEiE~eVi 274 (1162)
+++++|+| ++||+----|||| +| +++|.+|..+..++-+. -.+.+.+|||+.+.-++|+-+-++
T Consensus 33 ~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T~QTg~~G~~V~~vlvee~~~i~~E~Ylsi~ 112 (202)
T pfam08442 33 IAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSIV 112 (202)
T ss_pred HHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEE
T ss_conf 99980998699987423588876773899789999999999872977875502788962338999851540100799999
Q ss_pred EECCCCEE-EEEECC---CCCCCCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE---E--
Q ss_conf 72899889-996300---00001000010134---337322898899999999999998718345764689999---5--
Q gi|254780439|r 275 RDIKGNCI-VVCSIE---NLDPMGVHTGDSIT---VAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAV---N-- 342 (1162)
Q Consensus 275 rD~~gn~i-~v~~~E---n~dp~GiHtGDSi~---vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv---~-- 342 (1162)
.|...+++ ++++.| +++.+.-.+-|.|. +-|.-.+++.+ +.+++..+|+. |..--||+- +
T Consensus 113 ~DR~~~~~~ii~S~~GG~dIEeVa~~~Pe~I~k~~id~~~gl~~~~-------~r~~~~~lg~~-~~~~~~~~~~i~~Ly 184 (202)
T pfam08442 113 LDRASRGPVVIASSEGGVDIEEVAAKNPEAIIKVPIDPAKGLTPYQ-------AREIAFKLGLE-GELVKQAADIIKKLY 184 (202)
T ss_pred ECCCCCCEEEEEECCCCCCHHHHHCCCHHHEEEEEECCCCCCCHHH-------HHHHHHHCCCC-HHHHHHHHHHHHHHH
T ss_conf 7577784478972678850999730095572999718787989999-------99999984999-899999999999999
Q ss_pred -C-CCCEEEEEEECCCC
Q ss_conf -5-89849998504443
Q gi|254780439|r 343 -P-KNGKMVVIEMNPRV 357 (1162)
Q Consensus 343 -p-~~~~~yvIEvNpR~ 357 (1162)
- .+.+.-.+|+||=+
T Consensus 185 ~~f~~~Da~llEINPLV 201 (202)
T pfam08442 185 KLFVEYDATLVEINPLV 201 (202)
T ss_pred HHHHHCCCCEEEECCCC
T ss_conf 99996698289756887
No 126
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.81 E-value=8.6e-07 Score=71.59 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=84.9
Q ss_pred CCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCEE---ECCHHHHHHHHHHH
Q ss_conf 5203310286789998887098668542112156655565536-9716751344445654125---54899999999975
Q gi|254780439|r 729 PDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPLLIRPSYVLGGRAMQI---VYSENMLQDYLLDT 804 (1162)
Q Consensus 729 ~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~i-GyPVLVRPSyVLGG~~M~I---v~~~~eL~~yl~~a 804 (1162)
.-+--.+|++.--.++|.+.|+++|+|...++.++|++.-..+ |-|+.|+|--.--|.|..| ..+.+++...++.|
T Consensus 481 y~~~limenk~vtK~vl~~~g~~vp~g~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~~~~~~~~A~~~a 560 (753)
T PRK02471 481 YISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVASLEDYQKALEIA 560 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 57689884119999999985998999874078999999999867996686807777877659834899989999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 21013221111223333333345577774567022012010010102307
Q gi|254780439|r 805 LPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQN 854 (1162)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg 854 (1162)
++ -++.|+|++|+. ++|+-+-+|-+.
T Consensus 561 f~-----------------------~d~~VlVE~~i~-G~dyR~lVI~~k 586 (753)
T PRK02471 561 FK-----------------------EDSSVLVEEFIV-GTEYRFFVLDGK 586 (753)
T ss_pred HH-----------------------CCCEEEEEEEEC-CCCEEEEEECCE
T ss_conf 85-----------------------698189997316-870699999999
No 127
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=98.80 E-value=1.1e-07 Score=78.59 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=175.9
Q ss_pred HHHHHHHCCCEEEEECCCCCEEECCCCCC-CCEEECCCCHHHHHHHHHHHCCC-EEEECCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 99999987978999748765010784513-10043379999999999862898-89975887026888899887596288
Q gi|254780439|r 33 ACKALKEEGYRIILVNSNPATIMTDPDLA-DATYTEPITPEVVAKIIEKERPD-AILPTTGGQTALNTALSLKRMGVLDR 110 (1162)
Q Consensus 33 a~~alke~Gi~vVlVNsNpaTi~TD~~~a-D~vY~ePlt~e~v~~Ii~~E~pD-aIlp~~GGqtalnl~~~L~e~gil~~ 110 (1162)
-+.+|++.|+++=-||..-.++..+ |.. +. +++-| ||.=..-...+|-+|.-+.+.|
T Consensus 15 L~e~l~~lg~~v~~i~~~~~~~~~~-d~~i~~----------------~~~~dv~i~R~VS~~R~L~~a~~~E~~G---- 73 (289)
T TIGR02144 15 LLEELEKLGLQVRVIYVPELALPFG-DLGIKE----------------LEDLDVAIIRNVSQSRALYSAFLLEAVG---- 73 (289)
T ss_pred HHHHHHHHCCCCEEEECCCEEECCC-CCCCCH----------------HCCCCEEEECHHHHHHHHHHHHHHHHCC----
T ss_conf 9999987289732662034022078-856300----------------0375568983034567999999998489----
Q ss_pred HCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28757149989998605889999999987898886200023443333323333333444444443333222111111233
Q gi|254780439|r 111 YGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWN 190 (1162)
Q Consensus 111 ~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1162)
++.+ =+..+|..++|+-.=.-.|.+.|+|+|+|.++.
T Consensus 74 --~~~i-N~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~---------------------------------------- 110 (289)
T TIGR02144 74 --VPTI-NSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAF---------------------------------------- 110 (289)
T ss_pred --CEEE-CCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEE----------------------------------------
T ss_conf --7152-775898750461889999996678898358982----------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH--HHHHHCCCCCEEEEEECCCC-E
Q ss_conf 44444445544489999999998719969994132678664511169999999999--89985799827986644997-8
Q gi|254780439|r 191 LEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE--NGLHASPTTEVLIEESVLGW-K 267 (1162)
Q Consensus 191 ~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~--~al~~s~~~~vlIeksl~g~-k 267 (1162)
|-+.|+++++++||||++||..+==||---.+.|.++++.+++ +.+..+.-+=.||.|||.-+ +
T Consensus 111 -------------d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~~~~~llEh~e~~~~~~~~~~y~QEfi~KPgR 177 (289)
T TIGR02144 111 -------------DREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKDELESLLEHKEVLGGSQLKLYYVQEFINKPGR 177 (289)
T ss_pred -------------CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf -------------8689999999708988970888843788764037889889999999867976333799988718896
Q ss_pred EEEEEEEEECCCCEEEEEECCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 999999972899889996300000010--000101343373228988999999999999987183457646899995589
Q gi|254780439|r 268 EYELEMMRDIKGNCIVVCSIENLDPMG--VHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKN 345 (1162)
Q Consensus 268 EiE~eVirD~~gn~i~v~~~En~dp~G--iHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~ 345 (1162)
-|=.=|++|.-=-||. =..+|-+ =+|.==-==.|++ +++ .+++-|+|...++|- +..-|=--=++..
T Consensus 178 DIR~fViGd~~~~AIY----R~~~P~~W~TNtArGG~A~P~~-~~~----e~~~La~kA~~avgg--~~~~iDi~Es~~r 246 (289)
T TIGR02144 178 DIRVFVIGDEAIAAIY----RYSEPNHWRTNTARGGKAEPCK-IDE----EVEELAVKAAEAVGG--EVVGIDIVESKRR 246 (289)
T ss_pred EEEEEEECCCCEEEEE----ECCCCCCHHHHHHCCCCCCCCC-CCH----HHHHHHHHHHHHHCC--EEEEEEEEECCCC
T ss_conf 0899999797316788----3388530255630588447887-687----689999999999788--2789988643344
Q ss_pred ----CEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf ----8499985044431035788876346147677764
Q gi|254780439|r 346 ----GKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379 (1162)
Q Consensus 346 ----~~~yvIEvNpR~sRssalaskatgypia~vaakl 379 (1162)
+-|.|+||||-.= .==+-++||..+|.--++.
T Consensus 247 qndW~GlLV~EVN~~~E--FKN~~rvTGvNva~~l~~y 282 (289)
T TIGR02144 247 QNDWGGLLVNEVNGVPE--FKNTVRVTGVNVAEKLVEY 282 (289)
T ss_pred CCCCCCEEEEEECCCCC--CCCCEEECCCCHHHHHHHH
T ss_conf 54437868973568977--2785777474537899999
No 128
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=78.40 Aligned_cols=255 Identities=20% Similarity=0.231 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHH--HCCCEEEEC---CCCCHHHHHHHHH
Q ss_conf 88899999999879789997487650107845131004337999999999986--289889975---8870268888998
Q gi|254780439|r 28 YSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEK--ERPDAILPT---TGGQTALNTALSL 102 (1162)
Q Consensus 28 ys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~--E~pDaIlp~---~GGqtalnl~~~L 102 (1162)
..=-...+++++.|.++-+.-- . +|++..-+ |. .+.+.+.+-+++ |+.||-+.- =+| .--+|+.
T Consensus 25 aMlesll~~F~~~~ve~y~~~~----f-~~~~ig~~--f~-s~~~~~~~~~ek~le~~Da~LvIAPEdd~-lLy~Ltr-- 93 (307)
T COG1821 25 AMLESLLRAFAKSGVEVYETLT----F-ADPSIGVR--FK-STADDVLRDEEKALEKADATLVIAPEDDG-LLYSLTR-- 93 (307)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC----C-CCCCCCEE--EE-CCHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH--
T ss_conf 9999999999855945998603----3-26666511--32-04367889999987528846998047677-1899999--
Q ss_pred HHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87596288287571499899986058899999999878988862000234433333233333334444444433332221
Q gi|254780439|r 103 KRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAAL 182 (1162)
Q Consensus 103 ~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1162)
++++| ++.||.|+++|..+-|+-+-.+.++.. .++|+....
T Consensus 94 ----i~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~--------------------------------- 134 (307)
T COG1821 94 ----IYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREW--------------------------------- 134 (307)
T ss_pred ----HHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC---------------------------------
T ss_conf ----99987-675089777876751089899988411-248885535---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 11111233444444455444899999999987199699941326786645111699999999998998579982798664
Q gi|254780439|r 183 YALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEES 262 (1162)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeks 262 (1162)
.+.+--.+|||+.+-||.|.++..+..++ .++.+|
T Consensus 135 ------------------------------~~~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEf 169 (307)
T COG1821 135 ------------------------------AEEPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEF 169 (307)
T ss_pred ------------------------------CCCCCEEEECCCCCCCCCEEECCCCCCCH---------------HHHHHH
T ss_conf ------------------------------56785688622556775102046777521---------------667874
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHC-CCCCCCEEEEE
Q ss_conf 499789999999728998899963000000100001013433732-2898899999999999998718-34576468999
Q gi|254780439|r 263 VLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPAL-TLTDKEYQLMRNAAIAVLKEIG-VESGGANVQFA 340 (1162)
Q Consensus 263 l~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~q-TL~d~~~q~LR~~a~kI~r~lg-i~vG~~nVQFA 340 (1162)
|.| +++-+- +.++..-...--|+.-+.- -|+.....-.. -.+++....+++.|++...+++ . .|-.-|-..
T Consensus 170 IeG-~~lSVS-L~~GEkv~pLsvNrQfi~~----~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl-~GYVGVDlV 242 (307)
T COG1821 170 IEG-EHLSVS-LSVGEKVLPLSVNRQFIIF----AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGL-NGYVGVDLV 242 (307)
T ss_pred CCC-CCEEEE-EECCCCCCCCEECHHHHHH----CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEE
T ss_conf 377-614899-8558734430232232100----142344336767888178899999999999740255-542667899
Q ss_pred EECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 95589849998504443103578887634614767776413446101
Q gi|254780439|r 341 VNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE 387 (1162)
Q Consensus 341 v~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~e 387 (1162)
++ ++-||||+|||.+-+.-=.|++|+-.++..-.+=..|.-++-
T Consensus 243 ls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~~~ 286 (307)
T COG1821 243 LS---DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVLRY 286 (307)
T ss_pred EC---CCCEEEEECCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCE
T ss_conf 64---985799946877764343201461779999852855665514
No 129
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.76 E-value=3.1e-06 Score=67.16 Aligned_cols=262 Identities=18% Similarity=0.263 Sum_probs=152.7
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEECCC-CCCCCEEECCCCHHHHH-HHHH-HHCCC
Q ss_conf 9999767754205054666888999999998797899974876-5010784-51310043379999999-9998-62898
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP-ATIMTDP-DLADATYTEPITPEVVA-KIIE-KERPD 84 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp-aTi~TD~-~~aD~vY~ePlt~e~v~-~Ii~-~E~pD 84 (1162)
+|-++|| -|+-|.|+..|++|++|++|-..- +..=+.+ ..+|++.+-.--.+.+. ++-+ .-+-+
T Consensus 16 ~I~tlgS------------HSALqIl~GAK~EGF~Tv~vc~kgRe~~Y~~f~~~~De~iv~d~f~di~~~~~q~~L~~~N 83 (363)
T PRK13277 16 KIGVLAS------------HSALDVLDGAKDEGFRTIAVCQRGRERTYREFKGIVDEVIVLDKFKDILSEEIQEELREEN 83 (363)
T ss_pred EEEEEEC------------HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 7999844------------2598885448773994799957987524775557784699955577775489999998789
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8997588702688889988759628828757149989998605889999---9999878988862000234433333233
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFS---KAMQNIPLATPKSILANATDIKEHDRKL 161 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~---~~l~~~gip~~~s~~~~~~~~~~~~~~~ 161 (1162)
+|+.--|.-++ -+.-+.+..++.|.+.|.. .|-+.|+|..-+ .+|++.|+|.|+..
T Consensus 84 aI~IPhgSfv~-----Y~G~d~iE~~~~VP~FGNR--~lLrwEer~~~~~~~~LLe~Agi~~Pk~~-------------- 142 (363)
T PRK13277 84 AIFVPNRSFAV-----YVGYDAIENEFPVPIFGNR--YLLRWEERTGEKNYYRLLEKAGIPRPRTF-------------- 142 (363)
T ss_pred EEEECCCCEEE-----EECHHHHHCCCCCCEECCH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCC--------------
T ss_conf 79964888467-----7448888506888711475--66322345116789999986799987005--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCHH
Q ss_conf 3333344444444333322211111123344444445544489999999998719969994132678--66451116999
Q gi|254780439|r 162 HEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLG--GTGGGIAYNRS 239 (1162)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lG--G~G~~iv~n~e 239 (1162)
+-.++|-=|||||..-.-| |+|=-+|.|.+
T Consensus 143 ------------------------------------------------~~PeeIDr~VIVK~~gAkg~~grGyF~a~s~~ 174 (363)
T PRK13277 143 ------------------------------------------------KPPEEIDRPVIVKLPEAKRRLERGFFIAASYK 174 (363)
T ss_pred ------------------------------------------------CCHHHCCCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf ------------------------------------------------99666785269974567787763589967989
Q ss_pred HHHHHHHHHHHHC-----CCCCEEEEEECCCCEE---EEEEEEEEC--------C--CCE---EEEEECC----CCCCCC
Q ss_conf 9999999899857-----9982798664499789---999999728--------9--988---9996300----000010
Q gi|254780439|r 240 EFLEIVENGLHAS-----PTTEVLIEESVLGWKE---YELEMMRDI--------K--GNC---IVVCSIE----NLDPMG 294 (1162)
Q Consensus 240 eL~~~~~~al~~s-----~~~~vlIeksl~g~kE---iE~eVirD~--------~--gn~---i~v~~~E----n~dp~G 294 (1162)
||.+-.++-.+.. ...+..||+|+.|..= +=|--+.|. . -|. .-+...+ +++|-=
T Consensus 175 ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniDg~~rlpA~~Ql~~~~~p~~ 254 (363)
T PRK13277 175 DFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRY 254 (363)
T ss_pred HHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHHHHHCCCHHHHHCCCCCCCE
T ss_conf 99999999987587572214443789984376466521025323750366311102414144423986788416899845
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH------HCCCCCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 000101343373228988999999999999987------1834576468999955898499985044431
Q gi|254780439|r 295 VHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE------IGVESGGANVQFAVNPKNGKMVVIEMNPRVS 358 (1162)
Q Consensus 295 iHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~------lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~s 358 (1162)
+-+|-. +.+|-..-..+.-+.+-+.+++ =|+ +|....|.+++ ++.+++|-|+.+|.-
T Consensus 255 vvvGn~-----p~vlRESLL~~vf~~ge~fV~ask~l~~pG~-iGPFcLq~ivt-~dle~vvFevS~RI~ 317 (363)
T PRK13277 255 IEVGHE-----PATIRESLLEKVFDMGEKFVEATKELYPPGI-IGPFTLQTIVT-PDLDFVVYDVAPRIG 317 (363)
T ss_pred EEECCC-----CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEC-CCCEEEEEEEECCCC
T ss_conf 998885-----3243176579999999999999997469986-14433568985-886099999844214
No 130
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=98.74 E-value=7.1e-08 Score=80.15 Aligned_cols=384 Identities=20% Similarity=0.240 Sum_probs=203.6
Q ss_pred EEEEECCHHHHHHHHHHHCCCC-CCCEEEEECCCHHHHHHHHHHHHCCCEEEE-----CCCCHHHHCCCHHHHHHHHHHC
Q ss_conf 7984167889999998748567-822799844512466898888875983861-----2752033102867899988870
Q gi|254780439|r 675 LYFESLTEEDILEILRVEQQKG-ELVGIIVQFGGQTPLKLSKILEKNQIPILG-----TQPDSIDLAEDRDRFQKLLMEL 748 (1162)
Q Consensus 675 LYFEplt~E~V~~I~~~E~p~g-~~~~vi~q~gGqt~~~la~~L~~~gv~ilG-----ts~~~Id~aEDR~~F~~ll~~l 748 (1162)
+-+=|=|---|.+-.++.=|.- ...+.++|||==. ++-+|.+ ||.-+.++|.|++.=.++|+..
T Consensus 160 ~~LGPST~~Iv~eA~~R~IP~~rL~~g~~vqlGYG~----------~qkri~at~td~Ts~iav~iA~DK~lTK~iL~~~ 229 (876)
T TIGR02068 160 ASLGPSTAAIVKEAEKRGIPYMRLSAGSLVQLGYGS----------KQKRIQATETDRTSAIAVEIACDKDLTKKILKAA 229 (876)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCEEECCCCC----------CCEEEEEECCCCCCEEEHHHHCCHHHHHHHHHHC
T ss_conf 367987789999997378986873376445605775----------4303432002576501012223637899999847
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCCCEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 986685421121566555655369-716751344445654125-548999999999752101322111122333333334
Q gi|254780439|r 749 DLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGRAMQI-VYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQIN 826 (1162)
Q Consensus 749 ~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~~M~I-v~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~ 826 (1162)
|+|+|.|..+.+.+||.++|+++| |||.|+|-=.=-|||-.+ +.+.+|.+...+.|.
T Consensus 230 GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~--------------------- 288 (876)
T TIGR02068 230 GVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAK--------------------- 288 (876)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHH---------------------
T ss_conf 89888873667789999999971899689951779987437840777488999999998---------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEEEECCCEEE-EEEECCCCHHCCCC---------------CCE-EEEECCCCCCHHH
Q ss_conf 557777456702201201001010230798499-98520110215245---------------762-7981686689999
Q gi|254780439|r 827 TLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIV-VGIIEHIEEAGIHS---------------GDS-ACSLPSRSLSQQL 889 (1162)
Q Consensus 827 ~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I-~gimEHiE~aGVHS---------------GDS-~~v~PpqsLs~~~ 889 (1162)
..|....|.||||+. +.|.=+-+|-+ +=|-+ ..+.=|+=-=|+|+ ||- ..++-+-++....
T Consensus 289 ~~Sk~~~ViVEr~i~-G~dhRlLVVg~-k~VAvA~R~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~ 366 (876)
T TIGR02068 289 EESKTSEVIVERYIK-GRDHRLLVVGG-KLVAVAERVPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPLTKIRLDSVA 366 (876)
T ss_pred HCCCCCEEEEEEEEC-CCCEEEEEECC-EEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
T ss_conf 607866068987642-76238999989-6899861888868838720076640576467778888667788834330799
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE-ECC--------CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 999999999998741335762478851288599985-244--------44563045677739889999999985972100
Q gi|254780439|r 890 KDELISQTKALAGALNVIGLINVQYAIKDGKIYILE-VNP--------RASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 (1162)
Q Consensus 890 ~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIE-vNp--------RaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~ 960 (1162)
+..|.++-..+- --+-|+..+|+=+ +|. |-.+=||=.... +..|+|+ .|-.+.-
T Consensus 367 ~~~L~kqG~~ld-----------sVp~kG~~V~Lr~~ANLSTGG~A~DrTDeiHP~~~~~-----a~~aAk~-iGLDiaG 429 (876)
T TIGR02068 367 KLVLAKQGLTLD-----------SVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENIAI-----AVRAAKI-IGLDIAG 429 (876)
T ss_pred HHHHHHCCCCCC-----------CHHHCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHH-----HHHHHHE-EEEEECC
T ss_conf 999985497511-----------5454097888632477445873162257538458999-----9875200-0001212
Q ss_pred CCCC-CCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEE-EEEE
Q ss_conf 2466-6677776668738997203883445999867077563101377741999999999999838879887259-9996
Q gi|254780439|r 961 SIAA-YGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTV-FVSV 1038 (1162)
Q Consensus 961 ~~~~-~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~v-fisv 1038 (1162)
+..- .+........+-.-|.+ |--||.==.+-|-- |.+|+..+|....|- +--.+|+| .+||
T Consensus 430 ~D~v~~di~~PL~~~~G~iVEV-----NAaPGlrMH~~PS~-------G~pR~Va~Ai~d~LF----P~~~~grIPiV~v 493 (876)
T TIGR02068 430 VDVVTEDISKPLRDTDGAIVEV-----NAAPGLRMHLAPSQ-------GKPRNVAKAIVDMLF----PEEDDGRIPIVAV 493 (876)
T ss_pred EEECCCCCCCCHHHCCCEEEEE-----ECCCCHHHCCCCCC-------CCCCCCCHHHHHHCC----CCCCCCCEEEEEE
T ss_conf 2200310003745459729998-----56766344467777-------469871026875228----8878983448887
Q ss_pred CCHH-HHHHHH-HHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHHHCCCEEEEE-ECCCCCCCCCC
Q ss_conf 4412-899999-9999998898999938889999987981569750568781-078898679854999-67899852311
Q gi|254780439|r 1039 RDAD-KKRIVP-IIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRP-HIEDAISNRQVHLVI-NTTEGKKAIED 1114 (1162)
Q Consensus 1039 ~d~d-K~~~~~-~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~-~i~d~i~~~~i~lVI-Nt~~~~~~~~d 1114 (1162)
..-+ |--... +|+.|+.-|+.+=-|.--.-|+.+ ..|+|-.--.| ..--.+.+..||--+ -|-+|- -.+.
T Consensus 494 TGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~-----~~v~~GDntGP~SAr~~L~d~~VdaAVLEtarGG-iLR~ 567 (876)
T TIGR02068 494 TGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGK-----KLVEKGDNTGPKSARRILADPTVDAAVLETARGG-ILRE 567 (876)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECC-----EEEECCCCCCHHHHHHCCCCCCEEEEEEECCCCC-CCCC
T ss_conf 268983557889999998569827642037677557-----6662478987157301227888018998627872-2066
Q ss_pred HHHHHHHHHHCCCCEEECHH
Q ss_conf 08999999970997994599
Q gi|254780439|r 1115 SKSLRRATLIRKIPYYTTIA 1134 (1162)
Q Consensus 1115 g~~iRr~Ai~~~ip~~T~~~ 1134 (1162)
|..-= .++|-++||+.
T Consensus 568 GLafD----~c~VGvVtNi~ 583 (876)
T TIGR02068 568 GLAFD----RCDVGVVTNIA 583 (876)
T ss_pred CCCCC----CCCCEEEEECC
T ss_conf 50103----21416898337
No 131
>KOG0237 consensus
Probab=98.74 E-value=2.6e-06 Score=67.71 Aligned_cols=302 Identities=17% Similarity=0.232 Sum_probs=205.2
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHH-HHHHHHC-CCCEEEE-ECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 1899727630201476653189999-9999965-9806996-06865211232458637984167889999998748567
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEA-GFETIMI-NCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~-G~~tImI-N~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
.|+|+|||.- | |+ +|.|++. -.+.|.+ --|--|-|-|-.--+++-..+-.+|.+..-++..+-.-
T Consensus 4 ~vLviGsGgR------E------Hal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~l 71 (788)
T KOG0237 4 NVLVIGSGGR------E------HALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINL 71 (788)
T ss_pred EEEEECCCCH------H------HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 7999758842------7------688887632875553898369887456751237556557655999999998746218
Q ss_pred CCCEEEEECCCHHHH--HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf 822799844512466--8988888759838612752033102867899988870986685421121566555655369-7
Q gi|254780439|r 697 ELVGIIVQFGGQTPL--KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIG-F 773 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~--~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-y 773 (1162)
|+ .|--.|+ .|+..|.+.|++.+|++.++-.+--++..-.++|++-|||..+|.+.++.++|..|.+..+ .
T Consensus 72 ----Vv--vGPE~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~ 145 (788)
T KOG0237 72 ----VV--VGPELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDK 145 (788)
T ss_pred ----EE--ECCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCC
T ss_conf ----99--787326542356666405851017437777766417889988986399832026407879989999848985
Q ss_pred CEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 16751344445654125548999999999752101322111122333333334557777456702201201001010230
Q gi|254780439|r 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853 (1162)
Q Consensus 774 PVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~D 853 (1162)
++.|+..=---|.+--|..+.+|--+.+.+-+-. . . --+...+|+|+++|+ +-|+-+-++.|
T Consensus 146 ~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~---~------------~--fg~AG~tvViEE~LE-GeEvS~laftD 207 (788)
T KOG0237 146 ALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVK---K------------V--FGSAGKTVVIEELLE-GEEVSFLAFTD 207 (788)
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHH---H------------H--HCCCCCEEEHHHHCC-CCEEEEEEEEC
T ss_conf 6489605524577157405479999999999854---4------------4--135664586112307-62578999855
Q ss_pred CCCEEEEEEECCCCH-----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHH------HHHHCCCCCCCEEEEEECCCEEE
Q ss_conf 798499985201102-----1524576279816866899999999999999------98741335762478851288599
Q gi|254780439|r 854 NDQVIVVGIIEHIEE-----AGIHSGDSACSLPSRSLSQQLKDELISQTKA------LAGALNVIGLINVQYAIKDGKIY 922 (1162)
Q Consensus 854 g~~v~I~gimEHiE~-----aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~------ia~~L~v~G~~NIQfa~kd~~iY 922 (1162)
|.++.-.---++.-. .|-.+|---+-.|.+-.+++..+++.+.... .-+..+++|..---+.+..+.-.
T Consensus 208 G~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~ 287 (788)
T KOG0237 208 GYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPK 287 (788)
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCC
T ss_conf 73023388510025530789999888865565477569899999998876676657876399625687654688359960
Q ss_pred EEEECCCCCC-----CHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 9852444456-----304567773988999999998597210024
Q gi|254780439|r 923 ILEVNPRASR-----TVPFIAKAIGFPVAKVAARIIAGESLDASI 962 (1162)
Q Consensus 923 VIEvNpRaSR-----tvPfvSKatG~pl~~iAt~v~lG~~L~~~~ 962 (1162)
|||-|-|+.- -.|.+. -+|+++-.-. +...|+...
T Consensus 288 vLEfN~RFGDPEtQv~l~lLe----sDL~evi~a~-~~~~L~~~~ 327 (788)
T KOG0237 288 VLEFNVRFGDPETQVLLPLLE----SDLAEVILAC-CNGRLDTVD 327 (788)
T ss_pred EEEEECCCCCCHHHHHHHHHH----HHHHHHHHHH-HHCCCCCCC
T ss_conf 799840138920656598787----6799999998-618745567
No 132
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.72 E-value=1.7e-07 Score=77.18 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=174.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 99999999965980699606865211232458637984167889999998748567822799844512466898888875
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~ 720 (1162)
--...++.++.|.+.-.. .|. +|.++. .-|- .+.+++++-++++--+.-..=+|..=.+..--+|.+.++++
T Consensus 27 lesll~~F~~~~ve~y~~----~~f-~~~~ig--~~f~-s~~~~~~~~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~ 98 (307)
T COG1821 27 LESLLRAFAKSGVEVYET----LTF-ADPSIG--VRFK-STADDVLRDEEKALEKADATLVIAPEDDGLLYSLTRIYEEY 98 (307)
T ss_pred HHHHHHHHHHCCCEEEEE----ECC-CCCCCC--EEEE-CCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999999998559459986----033-266665--1132-04367889999987528846998047677189999999987
Q ss_pred CCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHH
Q ss_conf 98386127520331028678999888709866854211215665556553697167513444456541255489999999
Q gi|254780439|r 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDY 800 (1162)
Q Consensus 721 gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~y 800 (1162)
+..||+|+++|-.|-|+.+-.+.|+.. ++||+-.. -.+.+--.+|+|...-||.+..+..+..++
T Consensus 99 -~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e----------~~~~~~k~ViKp~dgCgge~i~~~~~~pd~--- 163 (307)
T COG1821 99 -VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE----------WAEEPKKYVIKPADGCGGEGILFGRDFPDI--- 163 (307)
T ss_pred -HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCC----------CCCCCCEEEECCCCCCCCCEEECCCCCCCH---
T ss_conf -675089777876751089899988411-24888553----------556785688622556775102046777521---
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECC-CCHHCCCCCCEEEE
Q ss_conf 99752101322111122333333334557777456702201201001010230798499985201-10215245762798
Q gi|254780439|r 801 LLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEH-IEEAGIHSGDSACS 879 (1162)
Q Consensus 801 l~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEH-iE~aGVHSGDS~~v 879 (1162)
.++..||+ +.++-|- +++|+++...++-+. |.-+|..-+=.-.
T Consensus 164 ---------------------------------~i~qEfIe-G~~lSVS-L~~GEkv~pLsvNrQfi~~~~~~~~y~gg- 207 (307)
T COG1821 164 ---------------------------------EIAQEFIE-GEHLSVS-LSVGEKVLPLSVNRQFIIFAGSELVYNGG- 207 (307)
T ss_pred ---------------------------------HHHHHHCC-CCCEEEE-EECCCCCCCCEECHHHHHHCCCEEEECCC-
T ss_conf ---------------------------------66787437-7614899-85587344302322321001423443367-
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 16866899999999999999987413-35762478851288599985244445630456777398899999999859721
Q gi|254780439|r 880 LPSRSLSQQLKDELISQTKALAGALN-VIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESL 958 (1162)
Q Consensus 880 ~PpqsLs~~~~~~i~~~t~~ia~~L~-v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L 958 (1162)
+-..+.+..+++.+.+.+..+.++ ..|..-+-.++. ++.||||+|||-.-++-=.|.+|+-.+++.-.+--.|+-+
T Consensus 208 --~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 208 --RTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCCEEEEECCCCCCCEEEEECCCCHHHHHHHHCCCCCCCC
T ss_conf --6788817889999999999974025554266789964-9857999468777643432014617799998528556655
Q ss_pred C
Q ss_conf 0
Q gi|254780439|r 959 D 959 (1162)
Q Consensus 959 ~ 959 (1162)
+
T Consensus 285 ~ 285 (307)
T COG1821 285 R 285 (307)
T ss_pred C
T ss_conf 1
No 133
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.68 E-value=2.7e-05 Score=59.77 Aligned_cols=268 Identities=19% Similarity=0.255 Sum_probs=171.2
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCC-CCCCEEEE----EECCHHHHHHHHH
Q ss_conf 77418997276302014766531899999999965980699606-865211232-45863798----4167889999998
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC-NPETVSTDY-DIADRLYF----ESLTEEDILEILR 690 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~-NPETVSTDy-d~sDrLYF----Eplt~E~V~~I~~ 690 (1162)
++=+|-+||| -|+-|-++..|++|++|+.|-- ..|..=+.| -..|.+.. ..+.-+.+-+-+.
T Consensus 13 ~~i~I~tlgS------------HSALqIl~GAK~EGF~Tv~vc~kgRe~~Y~~f~~~~De~iv~d~f~di~~~~~q~~L~ 80 (363)
T PRK13277 13 DKVKIGVLAS------------HSALDVLDGAKDEGFRTIAVCQRGRERTYREFKGIVDEVIVLDKFKDILSEEIQEELR 80 (363)
T ss_pred CCCEEEEEEC------------HHHHHHHCCHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 4547999844------------2598885448773994799957987524775557784699955577775489999998
Q ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEECCCCHHHHCCCH---HHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 7485678227998445124668988888-75983861275203310286---7899988870986685421121566555
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLKLSKILE-KNQIPILGTQPDSIDLAEDR---DRFQKLLMELDLNQPRNGISHSVEHARL 766 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~la~~L~-~~gv~ilGts~~~Id~aEDR---~~F~~ll~~l~i~~p~~~~a~s~eea~~ 766 (1162)
..|. +++--|-.++--=....+ +..++++|.- .+-..|+| .+-..||++.||+.|+-- +
T Consensus 81 ~~Na------I~IPhgSfv~Y~G~d~iE~~~~VP~FGNR--~lLrwEer~~~~~~~~LLe~Agi~~Pk~~---------~ 143 (363)
T PRK13277 81 EENA------IFVPNRSFAVYVGYDAIENEFPVPIFGNR--YLLRWEERTGEKNYYRLLEKAGIPRPRTF---------K 143 (363)
T ss_pred HCCE------EEECCCCEEEEECHHHHHCCCCCCEECCH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCC---------C
T ss_conf 7897------99648884677448888506888711475--66322345116789999986799987005---------9
Q ss_pred HHHHCCCCEEEECCCCCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCC
Q ss_conf 655369716751344445--65412554899999999975210132211112233333333455777--74567022012
Q gi|254780439|r 767 IACEIGFPLLIRPSYVLG--GRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGT--HPLLFDSYLSD 842 (1162)
Q Consensus 767 ~a~~iGyPVLVRPSyVLG--G~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~--~pVlIdkfl~~ 842 (1162)
-.++|.=||+|+..=--| |||--++.|.+|+.+-.++-++.. -++.+ ....|++|+.|
T Consensus 144 ~PeeIDr~VIVK~~gAkg~~grGyF~a~s~~ef~~k~~~li~~G------------------~I~~e~l~~~~IeEyv~G 205 (363)
T PRK13277 144 PPEEIDRPVIVKLPEAKRRLERGFFIAASYKDFYEKSERLIKQG------------------VIDREDLEKARIEEYVIG 205 (363)
T ss_pred CHHHCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHCC------------------CCCHHHCCCCEEEEEECC
T ss_conf 96667852699745677877635899679899999999998758------------------757221444378998437
Q ss_pred CEEEEEEEEEE--CCCEEEEEEECCCCH---------------HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH--
Q ss_conf 01001010230--798499985201102---------------15245762798168668999999999999999874--
Q gi|254780439|r 843 AMEIDVDALCQ--NDQVIVVGIIEHIEE---------------AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGA-- 903 (1162)
Q Consensus 843 a~EiEVDai~D--g~~v~I~gimEHiE~---------------aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~-- 903 (1162)
+. +-...... .+.+=+.|+=.+.|. ++++-.=-.+=.-|-++.+...+++-++..+..++
T Consensus 206 ~~-~~~~fFySpl~~~lEllgiD~R~esniDg~~rlpA~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vf~~ge~fV~ask 284 (363)
T PRK13277 206 AH-FNFNYFYSPIRDRVELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFDMGEKFVEATK 284 (363)
T ss_pred CE-EEEEECCCCCCCCEEEEECCCEEEECHHHHHCCCHHHHHCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 64-66521025323750366311102414144423986788416899845998885324317657999999999999999
Q ss_pred ----CCCCCCCEEEEEE-CCCEEEEEEECCCCCC
Q ss_conf ----1335762478851-2885999852444456
Q gi|254780439|r 904 ----LNVIGLINVQYAI-KDGKIYILEVNPRASR 932 (1162)
Q Consensus 904 ----L~v~G~~NIQfa~-kd~~iYVIEvNpRaSR 932 (1162)
=|+.|||-+|.++ +|-+++|-|+.+|.--
T Consensus 285 ~l~~pG~iGPFcLq~ivt~dle~vvFevS~RI~g 318 (363)
T PRK13277 285 ELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIGG 318 (363)
T ss_pred HHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 7469986144335689858860999998442148
No 134
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=98.55 E-value=7.5e-07 Score=72.03 Aligned_cols=111 Identities=26% Similarity=0.442 Sum_probs=80.9
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCC------C-----CCCHHH---------
Q ss_conf 59999644128999999999998898999938889999987981569750568------7-----810788---------
Q gi|254780439|r 1033 TVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLE------G-----RPHIED--------- 1092 (1162)
Q Consensus 1033 ~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e------~-----~~~i~d--------- 1092 (1162)
.+++||+ ||..+..+++.|.++||+|+||.||+++|+++|+++..|..+.. | +|.|--
T Consensus 2 rALISVs--dKt~l~~la~~L~~~g~~IisTgGT~~~L~~~gi~v~~Vs~~TgfpEil~GRVKTLHPkI~gGIL~~r~~~ 79 (187)
T cd01421 2 RALISVS--DKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNE 79 (187)
T ss_pred EEEEEEE--CCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEHHHHCCCHHHHCCCCCCCCCHHHHHHCCCCCCH
T ss_conf 0799864--53277999999998898899780899999866886066987319737758976535705544021566663
Q ss_pred ------HHHCCCEEEEE-EC-CCCC----C--C----CC----CHHHHHHHHHHC--CCCEEECHHHHHHHHHHHHH
Q ss_conf ------98679854999-67-8998----5--2----31----108999999970--99799459999999999996
Q gi|254780439|r 1093 ------AISNRQVHLVI-NT-TEGK----K--A----IE----DSKSLRRATLIR--KIPYYTTIAGADAVFQAIQA 1145 (1162)
Q Consensus 1093 ------~i~~~~i~lVI-Nt-~~~~----~--~----~~----dg~~iRr~Ai~~--~ip~~T~~~~a~a~~~al~~ 1145 (1162)
...-..||||| |+ |-.. . . ++ -|-.+=|+|..+ +|.++|+.+--..+++.|+.
T Consensus 80 ~h~~~~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~~IEnIDIGGpsliRAAAKN~~~V~v~~dp~dY~~~i~~l~~ 156 (187)
T cd01421 80 EHKDLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKS 156 (187)
T ss_pred HHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 58999986999702799846577777555899989999844677489999998268812876799999999999997
No 135
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.48 E-value=2.7e-06 Score=67.66 Aligned_cols=250 Identities=21% Similarity=0.310 Sum_probs=166.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECC-----CCHHHHHHHHHHH-C--------CC---E-EEECCC
Q ss_conf 899999999879789997487650107845131004337-----9999999999862-8--------98---8-997588
Q gi|254780439|r 30 GTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEP-----ITPEVVAKIIEKE-R--------PD---A-ILPTTG 91 (1162)
Q Consensus 30 ~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~eP-----lt~e~v~~Ii~~E-~--------pD---a-Ilp~~G 91 (1162)
-.||+.--+++|++-|-+-. |-.--.+.-++|..| |++. .+||-.| + -| + .-.++|
T Consensus 200 N~~Ai~lY~kLgF~~~p~f~----vKrkn~iNe~lf~gp~~~~~lnpy--a~ii~~ea~rrgi~vev~d~~~g~f~l~~g 273 (547)
T TIGR03103 200 NEQAIALYEKLGFRRIPVFA----LKRKNAINERLFSGPAPEADLNPY--ARIIVDEARRRGIEVEVLDAEGGLFRLSLG 273 (547)
T ss_pred CHHHHHHHHHHCCEECCEEE----EECCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHCCCEEEEECCCCCEEEEEEC
T ss_conf 68899999971975564578----860575674324699864457814--688776898668648986388885897128
Q ss_pred CCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 70268888998875962882875714998999860588999999998789888620002344333332333333344444
Q gi|254780439|r 92 GQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKK 171 (1162)
Q Consensus 92 Gqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1162)
|.+ +-|...|++- ||.-++..+.|+.+-+.++...|++||....+.
T Consensus 274 gr~-i~creslSel------------TSAvAms~c~DK~lT~rll~~AG~~VP~~~~~~--------------------- 319 (547)
T TIGR03103 274 GRS-IRCRESLSEL------------TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAG--------------------- 319 (547)
T ss_pred CEE-EEEECHHHHH------------HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC---------------------
T ss_conf 906-8861202578------------889998874049999999997399899974569---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 444333322211111123344444445544489999999998719969994132678664511-1699999999998998
Q gi|254780439|r 172 TLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI-AYNRSEFLEIVENGLH 250 (1162)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i-v~n~eeL~~~~~~al~ 250 (1162)
+.+++.+|++++| ||+|||.-+-.|+|--+ +.+++|++.++..|..
T Consensus 320 --------------------------------~~~~~~~fl~~~G-~VVVKP~dGnqGrGVtvnl~t~eev~~A~~~A~~ 366 (547)
T TIGR03103 320 --------------------------------NGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ 366 (547)
T ss_pred --------------------------------CHHHHHHHHHHCC-CEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf --------------------------------9899999998739-9997768788886158725999999999999997
Q ss_pred HCCCCCEEEEEECCCCEEEEEEE----------------EEECCCCEEEEEECCCCCCCCCCCCEEEE------------
Q ss_conf 57998279866449978999999----------------97289988999630000001000010134------------
Q gi|254780439|r 251 ASPTTEVLIEESVLGWKEYELEM----------------MRDIKGNCIVVCSIENLDPMGVHTGDSIT------------ 302 (1162)
Q Consensus 251 ~s~~~~vlIeksl~g~kEiE~eV----------------irD~~gn~i~v~~~En~dp~GiHtGDSi~------------ 302 (1162)
.+. +|+||+|+.| +++-+-| +.|+..+.--+-..+|-++.+-..+.|-.
T Consensus 367 ~~~--~VIVE~fi~G-~D~RlLVIggkVVAAA~R~Pa~VvGDG~sTI~eLIe~qnrrr~~~~g~esrI~lD~~t~~~L~~ 443 (547)
T TIGR03103 367 FCD--RVLLERYVPG-EDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAE 443 (547)
T ss_pred HCC--CEEEEEEECC-CCEEEEEECCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHH
T ss_conf 599--5799984069-7169999999999998147967984866209999843057755678997533469999999998
Q ss_pred -------ECC------------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-ECCCCEEEEEEECCC
Q ss_conf -------337------------------322898899999999999998718345764689999-558984999850444
Q gi|254780439|r 303 -------VAP------------------ALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAV-NPKNGKMVVIEMNPR 356 (1162)
Q Consensus 303 -------vaP------------------~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv-~p~~~~~yvIEvNpR 356 (1162)
|-| +-..||+....+..+|.+.+|.+|+ -.|-|-|.+ |+..-+|.|||+|-|
T Consensus 444 qG~tldSVp~~Ge~V~LR~nANLSTGGtaiDVTD~VHPe~~~~A~~AAraIGL--dIaGIDliv~DIs~P~~vIIEvNa~ 521 (547)
T TIGR03103 444 AGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI--PVVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCEEEEEECCC
T ss_conf 49981225888999999426602689851614567698999999999997399--8556899842689998189997789
Q ss_pred C
Q ss_conf 3
Q gi|254780439|r 357 V 357 (1162)
Q Consensus 357 ~ 357 (1162)
-
T Consensus 522 P 522 (547)
T TIGR03103 522 P 522 (547)
T ss_pred C
T ss_conf 6
No 136
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.46 E-value=1.5e-05 Score=61.71 Aligned_cols=223 Identities=18% Similarity=0.261 Sum_probs=164.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCH
Q ss_conf 999999874856782279984451246689888887598386127520331028678999888709866854--211215
Q gi|254780439|r 684 DILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--GISHSV 761 (1162)
Q Consensus 684 ~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~~a~s~ 761 (1162)
.|.+-++.-.|.| ..+.+-|-..|- .|+ .+.|..++=++.+-.....++..-.++-++.|+|-.|+ ..+.|.
T Consensus 81 Ev~~~ik~rg~~g--k~~fvmfdEeTe-~La---~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v~sY 154 (480)
T PRK06524 81 ETLEFIKNRGPGG--KACFVMFDEETQ-ALA---RQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRVDSY 154 (480)
T ss_pred HHHHHHHHCCCCC--EEEEEEECHHHH-HHH---HHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECCCCH
T ss_conf 9999998438987--589999563789-999---9709727558299997743611467521115887676300035669
Q ss_pred HHHHHHHHH--CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 665556553--697167513444456541255489999999997521013221111223333333345577774567022
Q gi|254780439|r 762 EHARLIACE--IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSY 839 (1162)
Q Consensus 762 eea~~~a~~--iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkf 839 (1162)
++..+.+++ +|--+.|-..|.-+|...-++.++.+..+|-.+-+ ++..+-|=|-
T Consensus 155 ~~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~~e~D~~k~a~eIv------------------------ge~eiKiMKR 210 (480)
T PRK06524 155 EELSALAHEAGLGDDLVVQTAYGDAGSTTFFVRGERDWDKYAGEIV------------------------GQPEIKVMKR 210 (480)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHH------------------------CCCHHHHHHH
T ss_conf 9999998870888635884256788741699725656767577640------------------------6631534434
Q ss_pred CCCCEEEEEEEEEECCCEEEEEEECCC----CH---HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCC
Q ss_conf 012010010102307984999852011----02---152457627981686689999999999999998741---33576
Q gi|254780439|r 840 LSDAMEIDVDALCQNDQVIVVGIIEHI----EE---AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGAL---NVIGL 909 (1162)
Q Consensus 840 l~~a~EiEVDai~Dg~~v~I~gimEHi----E~---aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L---~v~G~ 909 (1162)
| +.++.-+++..-....+++-.|-.+ |- -|=--|. -+=|.-+++.+.++-|+.+.++...| +++|-
T Consensus 211 I-~~~~~aiEac~T~~GTivgP~MTelvGf~ELTPykGgWCGN---ei~~~~~~p~~r~kare~~~k~Gd~L~~eGYrGy 286 (480)
T PRK06524 211 I-RNVEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGAWCGN---DIWRGALPPAQTRAAREMVAKLGDVLSREGYRGY 286 (480)
T ss_pred H-CCCCCCEEEEECCCCEEECHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 2-47641111220038736324677542841167667764355---4550228913669999999998799874456635
Q ss_pred CEEEEEE--CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 2478851--288599985244445630456777
Q gi|254780439|r 910 INVQYAI--KDGKIYILEVNPRASRTVPFIAKA 940 (1162)
Q Consensus 910 ~NIQfa~--kd~~iYVIEvNpRaSRtvPfvSKa 940 (1162)
|.+-|++ +.+++|.=|+|||.|-..|.+--+
T Consensus 287 FevDfLiD~dt~evyLGElNPRisGAS~mTN~~ 319 (480)
T PRK06524 287 FEVDLLHDLDADELYLGEVNPRLSGASPMTNLT 319 (480)
T ss_pred EEEEEEEECCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 899998855778475403676444888640356
No 137
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.44 E-value=1.3e-05 Score=62.27 Aligned_cols=231 Identities=15% Similarity=0.186 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHC-CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999998628-988997588702688889988759628828757149989998605889999999987898886200
Q gi|254780439|r 70 TPEVVAKIIEKER-PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSIL 148 (1162)
Q Consensus 70 t~e~v~~Ii~~E~-pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~ 148 (1162)
.+|.+.-|-++.. |.+...-|-..| +.| .++.|.+++=++.+-=.+..++-.-.++-++.|+|..|..+
T Consensus 79 hpEv~~~ik~rg~~gk~~fvmfdEeT-----e~L-----a~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl 148 (480)
T PRK06524 79 DPETLEFIKNRGPGGKACFVMFDEET-----QAL-----ARQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVI 148 (480)
T ss_pred CHHHHHHHHHCCCCCEEEEEEECHHH-----HHH-----HHHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEE
T ss_conf 98999999843898758999956378-----999-----99709727558299997743611467521115887676300
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 023443333323333333444444443333222111111233444444455444899999999987--199699941326
Q gi|254780439|r 149 ANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDE--IGLPLIIRPSFT 226 (1162)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~--iGyPvivRps~~ 226 (1162)
. .+.|.++..+.+++ +|--++|-.+|+
T Consensus 149 ~---------------------------------------------------~v~sY~~L~~~~~~aglG~DLVvQt~~G 177 (480)
T PRK06524 149 G---------------------------------------------------RVDSYEELSALAHEAGLGDDLVVQTAYG 177 (480)
T ss_pred E---------------------------------------------------CCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 0---------------------------------------------------3566999999988708886358842567
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEE------EEECCCCCCCCCCCCEE
Q ss_conf 786645111699999999998998579982798664499789999999728998899------96300000010000101
Q gi|254780439|r 227 LGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIV------VCSIENLDPMGVHTGDS 300 (1162)
Q Consensus 227 lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~------v~~~En~dp~GiHtGDS 300 (1162)
-.|..--++.++.++.++..+-. +..++-|=|-|.. ++.-+|..--.+|+++- ++--|----.|=--|-.
T Consensus 178 dsG~tTFFi~~e~D~~k~a~eIv---ge~eiKiMKRI~~-~~~aiEac~T~~GTivgP~MTelvGf~ELTPykGgWCGNe 253 (480)
T PRK06524 178 DAGSTTFFVRGERDWDKYAGEIV---GQPEIKVMKRIRN-VEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGAWCGND 253 (480)
T ss_pred CCCCEEEEEECHHHHHHHHHHHH---CCCHHHHHHHHCC-CCCCEEEEECCCCEEECHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88741699725656767577640---6631534434247-6411112200387363246775428411676677643554
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHH---HHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 3433732289889999999999999---87183457646899995589849998504443103578887634
Q gi|254780439|r 301 ITVAPALTLTDKEYQLMRNAAIAVL---KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATG 369 (1162)
Q Consensus 301 i~vaP~qTL~d~~~q~LR~~a~kI~---r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatg 369 (1162)
|- |. .|+..+.|+-|+.+.|.- +.=||+ |-.-+-|.+|.++++.|.=|+|||+|-.|+..--|++
T Consensus 254 i~--~~-~~~p~~r~kare~~~k~Gd~L~~eGYr-GyFevDfLiD~dt~evyLGElNPRisGAS~mTN~~a~ 321 (480)
T PRK06524 254 IW--RG-ALPPAQTRAAREMVAKLGDVLSREGYR-GYFEVDLLHDLDADELYLGEVNPRLSGASPMTNLTTE 321 (480)
T ss_pred CC--CC-CCCCHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 55--02-289136699999999987998744566-3589999885577847540367644488864035667
No 138
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.43 E-value=8.2e-05 Score=55.91 Aligned_cols=265 Identities=21% Similarity=0.248 Sum_probs=165.9
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCEEEEEECCHHHHHHHH--------
Q ss_conf 418997276302014766531899999999965980699606-86521123245863798416788999999--------
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC-NPETVSTDYDIADRLYFESLTEEDILEIL-------- 689 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~-NPETVSTDyd~sDrLYFEplt~E~V~~I~-------- 689 (1162)
=+|-++|| -++-|-.+..|+.|++||.|-- -++..-+-|..+| |-+-.++-.+|+
T Consensus 19 i~Iat~gS------------HSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~----e~i~v~~f~dil~~~iqe~L 82 (361)
T COG1759 19 ITIATIGS------------HSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVAD----EVIIVDKFSDILNEEIQEEL 82 (361)
T ss_pred EEEEEEEC------------CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCHHH----EEEEECHHHHHHHHHHHHHH
T ss_conf 69998515------------047888633776087279998357623676502023----48895204777648999999
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHH-HHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87485678227998445124668988-88875983861275203310286789998887098668542112156655565
Q gi|254780439|r 690 RVEQQKGELVGIIVQFGGQTPLKLSK-ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIA 768 (1162)
Q Consensus 690 ~~E~p~g~~~~vi~q~gGqt~~~la~-~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a 768 (1162)
..++ .+++--|-..+--=-. .-.+.-++++|... -.---+||.+-.++|.+.||+.|+-- +-.
T Consensus 83 ~~~n------~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~-lLrwE~~~~~~~~lLekAgi~~P~~~---------~~P 146 (361)
T COG1759 83 RELN------AIFIPHGSFVAYVGYDGIENEFEVPMFGNRE-LLRWEEDRKLEYKLLEKAGLRIPKKY---------KSP 146 (361)
T ss_pred HHCC------EEEECCCCEEEEECCHHHHHCCCCCCCCCHH-HHHHHCCHHHHHHHHHHCCCCCCCCC---------CCH
T ss_conf 8758------4994278647885314464411466116676-75300033568999997499988566---------996
Q ss_pred HHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 53697167513444456541255489999999997521013221111223333333345577774567022012010010
Q gi|254780439|r 769 CEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDV 848 (1162)
Q Consensus 769 ~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEV 848 (1162)
++|.=||+|++.-.-||||--++.|.+|+.+-.++.++...-.+ -.....-|++|+.|+ .+-.
T Consensus 147 eeIdr~ViVK~pgAkggRGyFiA~s~eef~ek~erl~~~gvi~~----------------Edlkna~IeEYv~G~-~f~~ 209 (361)
T COG1759 147 EEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITE----------------EDLKNARIEEYVVGA-PFYF 209 (361)
T ss_pred HHCCCCEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH----------------HHHHHCEEEEEEECC-CEEE
T ss_conf 78687369855776677437997698999999999987287653----------------443213544775066-0134
Q ss_pred EEEEEC--CCEEEEEEECCCCH---------------HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC------C
Q ss_conf 102307--98499985201102---------------152457627981686689999999999999998741------3
Q gi|254780439|r 849 DALCQN--DQVIVVGIIEHIEE---------------AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGAL------N 905 (1162)
Q Consensus 849 Dai~Dg--~~v~I~gimEHiE~---------------aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L------~ 905 (1162)
+..+.- ..+-+.|+--+.|. +++---=-.+=.=|-++.+...+++-++..+..++- |
T Consensus 210 ~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG 289 (361)
T COG1759 210 HYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPG 289 (361)
T ss_pred EEEECCCCCCEEEEEEEHHEECCCHHHCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 55202345704576300201316212115787899745899528998785132477778999999999999998745998
Q ss_pred CCCCCEEEEEEC-CCEEEEEEECCCCCC
Q ss_conf 357624788512-885999852444456
Q gi|254780439|r 906 VIGLINVQYAIK-DGKIYILEVNPRASR 932 (1162)
Q Consensus 906 v~G~~NIQfa~k-d~~iYVIEvNpRaSR 932 (1162)
+.|||.+|.++. |-++||-|+.||.--
T Consensus 290 ~iGpFcLq~i~t~dl~~vVFevS~Ri~g 317 (361)
T COG1759 290 IIGPFCLQTIVTDDLEFVVFEVSARIVG 317 (361)
T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 5132002001468751899997531047
No 139
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.33 E-value=3.9e-06 Score=66.37 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=116.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCC----EEECCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9998887098668542112156655565536971-67513444456541----255489999999997521013221111
Q gi|254780439|r 741 FQKLLMELDLNQPRNGISHSVEHARLIACEIGFP-LLIRPSYVLGGRAM----QIVYSENMLQDYLLDTLPGLVSEEIKR 815 (1162)
Q Consensus 741 F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyP-VLVRPSyVLGG~~M----~Iv~~~~eL~~yl~~a~~~~~~~~~~~ 815 (1162)
..+++.+-|||.|++..++|.+||..+++++|+| +.|++.--.||||- .++.|.+|.......-+-. .+.-
T Consensus 7 aK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~----~l~T 82 (202)
T pfam08442 7 AKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGK----NLVT 82 (202)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCC----EEEE
T ss_conf 999999859989991596999999999998099869998742358887677389978999999999987297----7875
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECC--CEEEEEEEC---CCCHHCCCCCCEEEEECC---CCCCH
Q ss_conf 2233333333455777745670220120100101023079--849998520---110215245762798168---66899
Q gi|254780439|r 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND--QVIVVGIIE---HIEEAGIHSGDSACSLPS---RSLSQ 887 (1162)
Q Consensus 816 ~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~--~v~I~gimE---HiE~aGVHSGDS~~v~Pp---qsLs~ 887 (1162)
.+. .. .-.+-+.|+|++.+.-.+|+-+-++.|.. ..++.+-.| +||+.--.+-|.+.-.|- ..+++
T Consensus 83 ~QT----g~--~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~ii~S~~GG~dIEeVa~~~Pe~I~k~~id~~~gl~~ 156 (202)
T pfam08442 83 KQT----GP--EGKPVNKVLVEEAVDIAREYYLSIVLDRASRGPVVIASSEGGVDIEEVAAKNPEAIIKVPIDPAKGLTP 156 (202)
T ss_pred EEC----CC--CCCEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHHCCCHHHEEEEEECCCCCCCH
T ss_conf 502----78--896233899985154010079999975777844789726788509997300955729997187879899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEE---------ECCCEEEEEEECCC
Q ss_conf 9999999999999874133576247885---------12885999852444
Q gi|254780439|r 888 QLKDELISQTKALAGALNVIGLINVQYA---------IKDGKIYILEVNPR 929 (1162)
Q Consensus 888 ~~~~~i~~~t~~ia~~L~v~G~~NIQfa---------~kd~~iYVIEvNpR 929 (1162)
...+ +++..|++.|-.--||+ +.+.+.-.+|+||=
T Consensus 157 ~~~r-------~~~~~lg~~~~~~~~~~~~i~~Ly~~f~~~Da~llEINPL 200 (202)
T pfam08442 157 YQAR-------EIAFKLGLEGELVKQAADIIKKLYKLFVEYDATLVEINPL 200 (202)
T ss_pred HHHH-------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999-------9999849998999999999999999999669828975688
No 140
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.20 E-value=2.4e-05 Score=60.11 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=96.9
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCEEEEEECC-CCCCCCHHHHHHCCCEEEEE
Q ss_conf 98872599996441289999999999988--98999938889999987-9815697505-68781078898679854999
Q gi|254780439|r 1028 LPHEGTVFVSVRDADKKRIVPIIQNFKKL--GFKIMATEGTARFLESH-GLETQKINKV-LEGRPHIEDAISNRQVHLVI 1103 (1162)
Q Consensus 1028 lP~~g~vfisv~d~dK~~~~~~a~~l~~l--Gf~l~AT~GTa~~L~~~-Gi~~~~v~k~-~e~~~~i~d~i~~~~i~lVI 1103 (1162)
+++..++-+.-.|.-|.+++..++.-.+. .++||||..|++.+++. |+++..+.-- ..|.-.|-..|..|+||+||
T Consensus 2 ~~~~k~IALIAHD~kK~~lv~f~~~~~~~L~~~~L~ATgtTG~~i~~~~gL~v~~~~SGplGGDqQIga~Ia~g~id~vi 81 (146)
T PRK05234 2 MPARKRIALIAHDHKKDDLVAWVKAHKELLEQHELYATGTTGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLI 81 (146)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 87666589995557649999999999999827977966759999999879836997368841899999999839987899
Q ss_pred ECCC--CCCC-CCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCEEECHHHC
Q ss_conf 6789--9852-3110899999997099799459999999999996105897177745531
Q gi|254780439|r 1104 NTTE--GKKA-IEDSKSLRRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSYR 1160 (1162)
Q Consensus 1104 Nt~~--~~~~-~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al~~~~~~~~~v~slqey~ 1160 (1162)
=..+ ..++ ..|=..+=|.|.-++||+-||..+|.+++.+.---...+-....|++|.
T Consensus 82 FF~DPl~~~phd~Dv~aLlRlc~v~nIP~AtN~aTAe~li~~~~~~~~~~~~~~d~~~~~ 141 (146)
T PRK05234 82 FFWDPLTAQPHDPDVKALLRLADVWNIPVATNRATADFLISSPLFNDELERGIPDYRRYL 141 (146)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 940887557775209999999987287642689789999708223654235888889999
No 141
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=98.19 E-value=0.00016 Score=53.70 Aligned_cols=158 Identities=20% Similarity=0.314 Sum_probs=76.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 685421121566555655369716751344445654125548-9999999997521013221111223333333345577
Q gi|254780439|r 752 QPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYS-ENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLG 830 (1162)
Q Consensus 752 ~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~-~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~ 830 (1162)
.|+-..+.|.+++.+|.++.| +|+++|.|.-+|+++..+.+ +..+...++.. . -..
T Consensus 12 ~P~T~vt~~~~~i~~f~~~~g-~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~~-~---------------------~~~ 68 (176)
T pfam02955 12 IPPTLVTRDKEEIRAFLEEHG-DIILKPLDGMGGAGVFRIKKDDPNLNVILETL-T---------------------QYG 68 (176)
T ss_pred CCCEEEECCHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCHHHHHHHHHH-H---------------------HCC
T ss_conf 869479889999999999779-89999578888767599547835589999999-8---------------------468
Q ss_pred CCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 774567022012010010102307984999852011021-----524576279816866899999999999999987413
Q gi|254780439|r 831 THPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEA-----GIHSGDSACSLPSRSLSQQLKDELISQTKALAGALN 905 (1162)
Q Consensus 831 ~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~a-----GVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~ 905 (1162)
..|+++.+|+.+..+-|+-++-=|+.+ .|.|.++-.- -+|-|-... +..|++++. +.+.++++.|.
T Consensus 69 ~~~ii~QeyI~~~~~gD~Rv~vi~g~~--v~a~~R~~~~g~~r~Nl~~Gg~~~---~~~lt~~~~----~ia~~~a~~l~ 139 (176)
T pfam02955 69 RRPVMAQRYLPEIKEGDKRILLVNGEP--IGALARIPAEGEFRGNLAAGGRGE---ATELTERDR----EICETIGPKLK 139 (176)
T ss_pred CCCEEEEECCCCCCCCCEEEEEECCEE--EEEEEEECCCCCCEEEECCCCEEE---CCCCCHHHH----HHHHHHHHHHH
T ss_conf 883986431376789976999999999--899998547985214402698000---578999999----99999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 35762478851288599985244445630456777398
Q gi|254780439|r 906 VIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGF 943 (1162)
Q Consensus 906 v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~ 943 (1162)
-.|+.=.=.=+-++ |++|+|.-.---..=+.+.||+
T Consensus 140 ~~Gl~faGVDiig~--~l~EVNvtsP~g~~~i~~~~g~ 175 (176)
T pfam02955 140 ERGLFFVGLDVIGD--YLTEINVTSPTGIREIERLTGV 175 (176)
T ss_pred HCCCEEEEEEEECC--EEEEEECCCCHHHHHHHHHHCC
T ss_conf 86997999998479--0889958890789999997497
No 142
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.17 E-value=0.00013 Score=54.45 Aligned_cols=173 Identities=20% Similarity=0.235 Sum_probs=113.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCCCCCC----EEECCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988870986685421121566555655369716-7513444456541----255489999999997521013221111
Q gi|254780439|r 741 FQKLLMELDLNQPRNGISHSVEHARLIACEIGFPL-LIRPSYVLGGRAM----QIVYSENMLQDYLLDTLPGLVSEEIKR 815 (1162)
Q Consensus 741 F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPV-LVRPSyVLGG~~M----~Iv~~~~eL~~yl~~a~~~~~~~~~~~ 815 (1162)
-.+++.+-|||.|++..+++.+|+..+++++|+|. .|+..---||||- +++.|.+|...+...-+.-.. --
T Consensus 8 aKell~~~gIpvp~g~v~~~~~ea~~~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~l----vT 83 (388)
T PRK00696 8 AKELLAEYGVPVPRGYVAFTPEEAVEAAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDL----VT 83 (388)
T ss_pred HHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC----CE
T ss_conf 99999986998999737799999999999829995899980545888868607990899999999999856774----21
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC--EEEEEEE---CCCCHHCCCCCCEEEEE---CCCCCCH
Q ss_conf 22333333334557777456702201201001010230798--4999852---01102152457627981---6866899
Q gi|254780439|r 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQ--VIVVGII---EHIEEAGIHSGDSACSL---PSRSLSQ 887 (1162)
Q Consensus 816 ~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~--v~I~gim---EHiE~aGVHSGDS~~v~---PpqsLs~ 887 (1162)
.+. .. .=-+-+-|||++.+.-.+|+=+-.+-|... .++.+-. =+||+.--.+-|.+... |...+++
T Consensus 84 ~QT----g~--~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~~i~S~~GG~dIEevA~~~Pe~I~k~~idp~~gl~~ 157 (388)
T PRK00696 84 HQT----GP--EGQPVNRLLIEEGADIAKELYLSAVVDRATRRVVFMASTEGGMEIEEVAEETPEKIHKVAVDPLVGLQP 157 (388)
T ss_pred ECC----CC--CCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEECCCCCCCCH
T ss_conf 015----88--884447999875166124068999986477857999988879879998652912389997577779899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEE---------ECCCEEEEEEECCCC
Q ss_conf 9999999999999874133576247885---------128859998524444
Q gi|254780439|r 888 QLKDELISQTKALAGALNVIGLINVQYA---------IKDGKIYILEVNPRA 930 (1162)
Q Consensus 888 ~~~~~i~~~t~~ia~~L~v~G~~NIQfa---------~kd~~iYVIEvNpRa 930 (1162)
... .+++..|+..|-.--||. +.+.+.-.+|+||=+
T Consensus 158 ~~~-------r~i~~~lgl~~~~~~~~~~ii~~Ly~~F~~~Da~LvEINPLv 202 (388)
T PRK00696 158 YQA-------REIAFKLGLPGEQVKQAVKIFMGLYKAFVEKDASLVEINPLV 202 (388)
T ss_pred HHH-------HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEE
T ss_conf 999-------999998299999999999999999999996597425612426
No 143
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.14 E-value=0.00028 Score=51.63 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=115.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCC----CEEECCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988870986685421121566555655369-716751344445654----1255489999999997521013221111
Q gi|254780439|r 741 FQKLLMELDLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGRA----MQIVYSENMLQDYLLDTLPGLVSEEIKR 815 (1162)
Q Consensus 741 F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~~----M~Iv~~~~eL~~yl~~a~~~~~~~~~~~ 815 (1162)
..+++.+.|||.|++..+++.+|+.++++++| .|+.|++.--.|||| -.++.+.+|...+..+-+-...+...
T Consensus 8 aKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~-- 85 (387)
T COG0045 8 AKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDI-- 85 (387)
T ss_pred HHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC--
T ss_conf 998999729989995454089999999998189967999225305766667668838989999999998486654576--
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECC-CCEEEEEEEEEECCC--EEEEEEEC---CCCHHCCCCCCE---EEEECCCCCC
Q ss_conf 22333333334557777456702201-201001010230798--49998520---110215245762---7981686689
Q gi|254780439|r 816 QYPNDKTGQINTLLGTHPLLFDSYLS-DAMEIDVDALCQNDQ--VIVVGIIE---HIEEAGIHSGDS---ACSLPSRSLS 886 (1162)
Q Consensus 816 ~~~~~~~~~~~~vs~~~pVlIdkfl~-~a~EiEVDai~Dg~~--v~I~gimE---HiE~aGVHSGDS---~~v~PpqsLs 886 (1162)
. --+-.-|||+++.. -.+|+=+-++-|... .++.+-.| .||..--++-+. ..+-|...++
T Consensus 86 --------~---G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~~~~idp~~g~~ 154 (387)
T COG0045 86 --------K---GEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLR 154 (387)
T ss_pred --------C---CCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEEECCCCCCC
T ss_conf --------8---84542899974677764337999999737783799996677951899500283452689747766878
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEE---------ECCCEEEEEEECCCC
Q ss_conf 99999999999999874133576247885---------128859998524444
Q gi|254780439|r 887 QQLKDELISQTKALAGALNVIGLINVQYA---------IKDGKIYILEVNPRA 930 (1162)
Q Consensus 887 ~~~~~~i~~~t~~ia~~L~v~G~~NIQfa---------~kd~~iYVIEvNpRa 930 (1162)
+-. +..++..++..|..-=|++ +.+.+.-.+|+||=+
T Consensus 155 ~~~-------aR~la~~lgl~~~~~~~~~~ii~~ly~~f~~~Da~lvEINPLv 200 (387)
T COG0045 155 PYQ-------ARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLV 200 (387)
T ss_pred HHH-------HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 779-------9999997499878999999999999999997587678752508
No 144
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.08 E-value=5.4e-05 Score=57.35 Aligned_cols=284 Identities=15% Similarity=0.200 Sum_probs=168.0
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCEEEE-----EECCHHHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324-5863798-----416788999999874
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYD-IADRLYF-----ESLTEEDILEILRVE 692 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd-~sDrLYF-----Eplt~E~V~~I~~~E 692 (1162)
+.|+|||+--+ ..-.++++.++.+.+-.+.+. --.-| |. +..+.-- |.=..-...+..++.
T Consensus 4 PgviilGgahg-----------tlalARSfg~~~vpv~~ls~d-~plPt-~Sr~vr~t~~w~gphd~gaiafLrd~Aekh 70 (415)
T COG3919 4 PGVIILGGAHG-----------TLALARSFGEEFVPVLALSAD-GPLPT-YSRIVRVTTHWNGPHDEGAIAFLRDFAEKH 70 (415)
T ss_pred CCEEEECCCCH-----------HHHHHHHHCCCCCEEEEEECC-CCCCC-HHHHHEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 86699746501-----------689887614012517998469-88864-444310100048998520999999987614
Q ss_pred CCCCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 85678227998445124----66898888875983861275203310286789998887098668542112156655565
Q gi|254780439|r 693 QQKGELVGIIVQFGGQT----PLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIA 768 (1162)
Q Consensus 693 ~p~g~~~~vi~q~gGqt----~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a 768 (1162)
.-+| ++.--+|.- ..+....|.+. .++.=.+-....--+++-.|.+.+.++|++.|+--.++|..++ .+
T Consensus 71 glkg----~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~--~~ 143 (415)
T COG3919 71 GLKG----YLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDT--LV 143 (415)
T ss_pred CCCC----EEEEECCCCEEEEHHHHHHHHHHH-HCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCHHHH--HH
T ss_conf 7673----599963883066257569999887-6577873899999860828888899819997606772314432--12
Q ss_pred HHCCCCEEEECCCCCC----CCCC-EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 5369716751344445----6541-2554899999999975210132211112233333333455777745670220120
Q gi|254780439|r 769 CEIGFPLLIRPSYVLG----GRAM-QIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDA 843 (1162)
Q Consensus 769 ~~iGyPVLVRPSyVLG----G~~M-~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a 843 (1162)
.++-|||+.+|--..| +|+- -.+.|.+|+...+..|.. .+-+| .|+|..||.++
T Consensus 144 ~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~e--------------------eigpD-nvvvQe~IPGG 202 (415)
T COG3919 144 DELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYE--------------------EIGPD-NVVVQEFIPGG 202 (415)
T ss_pred HHEEEEEEECCCCCCCCEEEHHHHEEECCCHHHHHHHHHHHHH--------------------HCCCC-CEEEEEECCCC
T ss_conf 3144038861788875100101001431677999999999887--------------------43997-25887705799
Q ss_pred EEEEE--EEEEECCCEEEEEEE----CCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-
Q ss_conf 10010--102307984999852----01102152457627981686689999999999999998741335762478851-
Q gi|254780439|r 844 MEIDV--DALCQNDQVIVVGII----EHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI- 916 (1162)
Q Consensus 844 ~EiEV--Dai~Dg~~v~I~gim----EHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~- 916 (1162)
-|--. -|+-|.+.-+....- |.=-+-|.- |+.|.-+. -++..+++.++-+++...|+.|++|-.
T Consensus 203 gE~qfsyaAlw~~g~pvaeftarr~rqyPvdfgyt---st~vevvD------n~Q~i~aar~~L~si~htGlvevefK~D 273 (415)
T COG3919 203 GENQFSYAALWDKGHPVAEFTARRLRQYPVDFGYT---STVVEVVD------NQQVIQAARDFLESIEHTGLVEVEFKYD 273 (415)
T ss_pred CCCCCHHHHHHHCCCCHHHHHCCHHHCCCCCCCCC---CEEEEECC------CHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 82232098898579834644234222188654645---27999528------2899999999998631255478998756
Q ss_pred -CCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf -2885999852444456304567773988999999998
Q gi|254780439|r 917 -KDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 917 -kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~ 953 (1162)
.|+.+.++++|||--|.+-+++.+ ||+|-..-..+.
T Consensus 274 ~RDGs~KlldvNpRpw~wfgl~taa-G~nLg~~Lwa~~ 310 (415)
T COG3919 274 PRDGSYKLLDVNPRPWRWFGLVTAA-GYNLGRYLWADR 310 (415)
T ss_pred CCCCCEEEEEECCCCCCEEEEEECC-CCCCCCEEEEEE
T ss_conf 8777246776258873045477404-545301478651
No 145
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.04 E-value=7.9e-05 Score=56.02 Aligned_cols=224 Identities=20% Similarity=0.221 Sum_probs=115.4
Q ss_pred EECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 97276302014766531899999999965980699606865211232458637984167889999998748567822799
Q gi|254780439|r 623 ILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGII 702 (1162)
Q Consensus 623 VlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi 702 (1162)
||--..++.-.|.||. ..-.|..+...-.-+.|.|- -.||.|...=.++=+|-+.|+...-++.-.-.+ ..|+
T Consensus 496 vl~~~g~~vp~g~~~~-~~~~a~~~~~~~~~k~ivvK----pkstn~g~gi~if~~~~~~~~~~~A~~~af~~d--~~Vl 568 (753)
T PRK02471 496 ILAEAGFPVPAGDEFT-SLEEALADYSLFEDKAIVVK----PKSTNFGLGISIFKEVASLEDYQKALEIAFKED--SSVL 568 (753)
T ss_pred HHHHCCCCCCCCCEEC-CHHHHHHHHHHHCCCCEEEC----CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CEEE
T ss_conf 9998599899987407-89999999998679966868----077778776598348999899999999998569--8189
Q ss_pred EE------------CCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 84------------451246689888887598386127520331028678999888709866854211215665556553
Q gi|254780439|r 703 VQ------------FGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE 770 (1162)
Q Consensus 703 ~q------------~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~ 770 (1162)
+- .|||.. ..+++.-.++.|-- .+++.|.++..++
T Consensus 569 VE~~i~G~dyR~lVI~~kvv----Av~~R~Pa~VvGDG-----------------------------~~TI~eLI~~kN~ 615 (753)
T PRK02471 569 VEEFIVGTEYRFFVLDGKVE----AVLLRVPANVVGDG-----------------------------IHTVRELVAQKNQ 615 (753)
T ss_pred EEEEECCCCEEEEEECCEEE----EEEECCCCEEEECC-----------------------------HHHHHHHHHHHCC
T ss_conf 99731687069999999999----99904797377186-----------------------------7569999998658
Q ss_pred CCCCEEEECCCCCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 69716751344445654--1255489999999997521013221111223333333345577774567022012010010
Q gi|254780439|r 771 IGFPLLIRPSYVLGGRA--MQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDV 848 (1162)
Q Consensus 771 iGyPVLVRPSyVLGG~~--M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEV 848 (1162)
+|-..-|.+. ..|.-|+.+ +.++.. .-+..
T Consensus 616 -------dp~Rg~~~~~pl~~I~ld~~~-~~~L~~----------------------------------------qg~tl 647 (753)
T PRK02471 616 -------DPLRGTDHRTPLEKIQLGEIE-QLMLKQ----------------------------------------QGLTF 647 (753)
T ss_pred -------CCCCCCCCCCCCCEECCCHHH-HHHHHH----------------------------------------CCCCC
T ss_conf -------855578877877222369899-999998----------------------------------------59994
Q ss_pred -EEEEECCCEEEEEEECCCCHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--------
Q ss_conf -1023079849998520110215245-762798168668999999999999999874133576247885128--------
Q gi|254780439|r 849 -DALCQNDQVIVVGIIEHIEEAGIHS-GDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD-------- 918 (1162)
Q Consensus 849 -Dai~Dg~~v~I~gimEHiE~aGVHS-GDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd-------- 918 (1162)
++...|+.|++- +.+-+|+ |||+ ..+++..+..++.+.++|++++.. .|-|-+++.|
T Consensus 648 dsVp~~ge~V~Lr------~naNlSTGG~si------DvTD~ihp~~~~~A~~aa~a~gl~-i~GvDii~~di~~p~~~~ 714 (753)
T PRK02471 648 DSIPKKGEIVYLR------ENSNISTGGDSI------DMTDDMHDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPE 714 (753)
T ss_pred CCCCCCCCEEEEE------CCCCCCCCCCCE------ECCCCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCC
T ss_conf 5528889899983------476157898715------046677989999999999860998-568999715777666445
Q ss_pred -CEEEEEEECCCCC-CCHHHHHHHHCCCHHH
Q ss_conf -8599985244445-6304567773988999
Q gi|254780439|r 919 -GKIYILEVNPRAS-RTVPFIAKAIGFPVAK 947 (1162)
Q Consensus 919 -~~iYVIEvNpRaS-RtvPfvSKatG~pl~~ 947 (1162)
+..-|||+|.+-. |.+-|-++-.+.|++.
T Consensus 715 ~~~~~IIEvN~~P~l~mH~~P~~G~~r~v~~ 745 (753)
T PRK02471 715 NPNYGIIELNFNPAMYMHCFPYKGKGRRITD 745 (753)
T ss_pred CCCEEEEEECCCCCHHHHCCCCCCCCCCHHH
T ss_conf 7964999966886414207877898854389
No 146
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=97.95 E-value=1.3e-05 Score=62.12 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 22267689999989975037876
Q gi|254780439|r 438 MAIGRTFAESLQKALRGLETGLT 460 (1162)
Q Consensus 438 m~iGr~f~eA~~KAlrsle~~~~ 460 (1162)
+++|.+..+||.+|+.+=-..-.
T Consensus 282 vA~~~~~~~Ay~~A~~~Dp~SAF 304 (514)
T PRK00881 282 VAVGDTILEAYDKAYACDPVSAF 304 (514)
T ss_pred HHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 20465799999998704974545
No 147
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00025 Score=52.06 Aligned_cols=131 Identities=21% Similarity=0.328 Sum_probs=97.1
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCEEEEEEC-CCCCCCCHHHHHHCCCEEEEEE
Q ss_conf 8872599996441289999999999988--98999938889999987-981569750-5687810788986798549996
Q gi|254780439|r 1029 PHEGTVFVSVRDADKKRIVPIIQNFKKL--GFKIMATEGTARFLESH-GLETQKINK-VLEGRPHIEDAISNRQVHLVIN 1104 (1162)
Q Consensus 1029 P~~g~vfisv~d~dK~~~~~~a~~l~~l--Gf~l~AT~GTa~~L~~~-Gi~~~~v~k-~~e~~~~i~d~i~~~~i~lVIN 1104 (1162)
|....+-+.-.|.-|..++.-++.-.++ -+.||||.-|...+.+. |+++..+.- +..|...|=.+|.+|+||++|=
T Consensus 2 ~~~k~IALIAHD~kK~~lv~f~~~~~~~L~~h~L~ATGTTG~~i~~atgL~v~~~~SGPmGGDQQiGa~Iaeg~id~lIF 81 (142)
T COG1803 2 PARKHIALIAHDHKKDDLVNFVQAHKELLSRHDLYATGTTGGLIQEATGLNVHRLKSGPMGGDQQIGALIAEGKIDVLIF 81 (142)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE
T ss_conf 85515888843110889999999989975315689844712788987587157740478884078878876286229999
Q ss_pred CCCC--CCCC-CCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCEEECHHH
Q ss_conf 7899--8523-11089999999709979945999999999999610589717774553
Q gi|254780439|r 1105 TTEG--KKAI-EDSKSLRRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSY 1159 (1162)
Q Consensus 1105 t~~~--~~~~-~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al~~~~~~~~~v~slqey 1159 (1162)
.-+. .++- -|=..+-|.|.-++||+-||..+|+.++.++...+....++...++|
T Consensus 82 f~DPLtaqPHdpDVkAL~Rl~~V~nIP~A~N~aTAe~li~~~~~~~~~~~~i~dy~~~ 139 (142)
T COG1803 82 FWDPLTAQPHDPDVKALLRLATVYNIPVATNRATAEFLIKSLLFNDFVEIEIPDYEEY 139 (142)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHH
T ss_conf 7067878999857999999988615611311757999983524587315753654533
No 148
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=97.88 E-value=0.00019 Score=53.07 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=83.5
Q ss_pred EEECCHHHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCEEEEEECC-CCCCCCHHHHHHCCCEEEEEECCC--CC
Q ss_conf 996441289999999999988--98999938889999987-9815697505-687810788986798549996789--98
Q gi|254780439|r 1036 VSVRDADKKRIVPIIQNFKKL--GFKIMATEGTARFLESH-GLETQKINKV-LEGRPHIEDAISNRQVHLVINTTE--GK 1109 (1162)
Q Consensus 1036 isv~d~dK~~~~~~a~~l~~l--Gf~l~AT~GTa~~L~~~-Gi~~~~v~k~-~e~~~~i~d~i~~~~i~lVINt~~--~~ 1109 (1162)
+.-.|.-|.+++..++...+. +++||||..|...+++. |+++..+.-- ..|.-.|-.+|..|+||+||=..+ ..
T Consensus 4 LIAHD~kK~~lv~f~~~~~~~L~~~~L~ATgtTG~~i~e~~~L~V~~~~sGplGGDqQIga~I~~g~id~viFf~DPl~~ 83 (115)
T cd01422 4 LIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTA 83 (115)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98345665999999999999970796686400999999864387688557996689999999981998889984289877
Q ss_pred CC-CCCHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 52-31108999999970997994599999999
Q gi|254780439|r 1110 KA-IEDSKSLRRATLIRKIPYYTTIAGADAVF 1140 (1162)
Q Consensus 1110 ~~-~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~ 1140 (1162)
++ ..|-..+=|.|.-++||+-||..+|++++
T Consensus 84 ~ph~~Di~aLlRlc~v~niP~AtN~aTAe~li 115 (115)
T cd01422 84 QPHEPDVKALLRLCDVYNIPLATNRSTADAII 115 (115)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHC
T ss_conf 99970299999999861961217998898849
No 149
>PRK05246 glutathione synthetase; Provisional
Probab=97.86 E-value=0.0027 Score=43.83 Aligned_cols=197 Identities=19% Similarity=0.265 Sum_probs=121.3
Q ss_pred HHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCE-EECCHH
Q ss_conf 8875983861275203310286789998887098668542112156655565536971675134444565412-554899
Q gi|254780439|r 717 LEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQ-IVYSEN 795 (1162)
Q Consensus 717 L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~-Iv~~~~ 795 (1162)
+++.|+.++-.+ .+|-.+-++-...++. ++ .|+--...+.++...|.++.| .++++|-|.-||.+-. +-.++.
T Consensus 105 ~~~~gv~ViN~P-~~IR~~nEKL~~l~F~-~~---iP~TlVt~~~~~i~~F~~~~~-~iVlKPL~g~gG~gV~~i~~~d~ 178 (316)
T PRK05246 105 AERAGTLVVNKP-QSLRDANEKLFTLWFP-EL---MPPTLVTRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDP 178 (316)
T ss_pred HCCCCEEEECCH-HHHHHHHHHHHHHHHH-HH---CCCEEEECCHHHHHHHHHHHC-CEEEEECCCCCCCEEEEECCCCC
T ss_conf 153870897698-9986426478887406-44---899357378999999999738-78999756889840899777862
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHC-----
Q ss_conf 999999975210132211112233333333455777745670220120100101023079849998520110215-----
Q gi|254780439|r 796 MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAG----- 870 (1162)
Q Consensus 796 eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aG----- 870 (1162)
.+...++... -.+..||.+.+||...++=|.-++-=+++.+-.+ |-++-+.|
T Consensus 179 n~~~i~e~~t----------------------~~~~~~v~vQ~yl~ei~~GDkRiilv~G~~ig~a-~~R~p~~gdfR~N 235 (316)
T PRK05246 179 NLGVILETLT----------------------EQGRRPVMAQRYLPEIKEGDKRILLVDGEPVGYA-LARIPAGGETRGN 235 (316)
T ss_pred CHHHHHHHHH----------------------HCCCEEEEEEEEHHHCCCCCEEEEEECCEEEHHE-EEECCCCCCCEEE
T ss_conf 3899999997----------------------4587368988651243689879999999991146-8832678861132
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 24576279816866899999999999999987413357624788512885999852444456304567773988999999
Q gi|254780439|r 871 IHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAA 950 (1162)
Q Consensus 871 VHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt 950 (1162)
.|.|-.... ..|++..++ ++.+++..|.-.|++=+-.=+=++ |++|+|--+---..=+.+.+|+++++.-.
T Consensus 236 l~~Gg~~~~---~~lt~~~~~----i~~~i~p~L~~~gl~f~GiDvig~--~ltEINVTSPtgl~ei~~~~~~~~~~~~~ 306 (316)
T PRK05246 236 LAAGGRGEA---TPLTERDRE----ICAAIGPELKERGLIFVGIDVIGD--YLTEINVTSPTGIREIERLTGVDIAGMLW 306 (316)
T ss_pred EECCCEEEE---ECCCHHHHH----HHHHHHHHHHHCCCEEEEEEEECC--EEEEEECCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 305980267---169989999----999999999987988999975378--26899368954599999875999899999
Q ss_pred H
Q ss_conf 9
Q gi|254780439|r 951 R 951 (1162)
Q Consensus 951 ~ 951 (1162)
.
T Consensus 307 d 307 (316)
T PRK05246 307 D 307 (316)
T ss_pred H
T ss_conf 9
No 150
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=97.76 E-value=0.0019 Score=45.07 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEEECC
Q ss_conf 48999999999871996999413267866451116-9999999999899857998279866449978--99999997289
Q gi|254780439|r 202 CHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAY-NRSEFLEIVENGLHASPTTEVLIEESVLGWK--EYELEMMRDIK 278 (1162)
Q Consensus 202 ~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~-n~eeL~~~~~~al~~s~~~~vlIeksl~g~k--EiE~eVirD~~ 278 (1162)
.+|.+++.+|.++.| +|++||.++-+|+|.-.+. ++..+..+++ .+.......+++.|||...+ ++-+-|+.
T Consensus 18 t~~~~~i~~f~~~~g-~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e-~~~~~~~~~ii~QeyI~~~~~gD~Rv~vi~--- 92 (176)
T pfam02955 18 TRDKEEIRAFLEEHG-DIILKPLDGMGGAGVFRIKKDDPNLNVILE-TLTQYGRRPVMAQRYLPEIKEGDKRILLVN--- 92 (176)
T ss_pred ECCHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCHHHHHHHH-HHHHCCCCCEEEEECCCCCCCCCEEEEEEC---
T ss_conf 889999999999779-899995788887675995478355899999-998468883986431376789976999999---
Q ss_pred CCEEEEEECCCCC-----CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 9889996300000-----01000010134337322898899999999999998718345764689999558984999850
Q gi|254780439|r 279 GNCIVVCSIENLD-----PMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEM 353 (1162)
Q Consensus 279 gn~i~v~~~En~d-----p~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEv 353 (1162)
|. .++.|.-.- -.-+|.|=+.. ..+|++++.. +...+-+..++.|+ -.+-|-++ + -|++|+
T Consensus 93 g~--~v~a~~R~~~~g~~r~Nl~~Gg~~~---~~~lt~~~~~-ia~~~a~~l~~~Gl--~faGVDii----g--~~l~EV 158 (176)
T pfam02955 93 GE--PIGALARIPAEGEFRGNLAAGGRGE---ATELTERDRE-ICETIGPKLKERGL--FFVGLDVI----G--DYLTEI 158 (176)
T ss_pred CE--EEEEEEEECCCCCCEEEECCCCEEE---CCCCCHHHHH-HHHHHHHHHHHCCC--EEEEEEEE----C--CEEEEE
T ss_conf 99--9899998547985214402698000---5789999999-99999999998699--79999984----7--908899
Q ss_pred CC
Q ss_conf 44
Q gi|254780439|r 354 NP 355 (1162)
Q Consensus 354 Np 355 (1162)
|.
T Consensus 159 Nv 160 (176)
T pfam02955 159 NV 160 (176)
T ss_pred EC
T ss_conf 58
No 151
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.71 E-value=0.00079 Score=48.11 Aligned_cols=166 Identities=25% Similarity=0.320 Sum_probs=116.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999998789888620002344333332333333344444444333322211111123344444445544489999999
Q gi|254780439|r 131 LFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQ 210 (1162)
Q Consensus 131 ~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~ 210 (1162)
+.++++.+.|+|+|++..+. +.+++.+
T Consensus 7 qaKelf~~~GiPvp~g~v~~-----------------------------------------------------s~eea~~ 33 (387)
T COG0045 7 QAKELFAKYGIPVPPGYVAT-----------------------------------------------------SPEEAEE 33 (387)
T ss_pred HHHHHHHHCCCCCCCCEEEE-----------------------------------------------------CHHHHHH
T ss_conf 89989997299899954540-----------------------------------------------------8999999
Q ss_pred HHHHCC-CCEEEEECCCCCCCC----CCCCCCHHHHHHHHHHHHH----HC----CCCCEEEEEECC-CCEEEEEEEEEE
Q ss_conf 998719-969994132678664----5111699999999998998----57----998279866449-978999999972
Q gi|254780439|r 211 ALDEIG-LPLIIRPSFTLGGTG----GGIAYNRSEFLEIVENGLH----AS----PTTEVLIEESVL-GWKEYELEMMRD 276 (1162)
Q Consensus 211 ~a~~iG-yPvivRps~~lGG~G----~~iv~n~eeL~~~~~~al~----~s----~~~~vlIeksl~-g~kEiE~eVirD 276 (1162)
+++++| .|++||+----|||| -++|.|.+|..++.++-|. .. +.+.+|||+... -.||+=+-++-|
T Consensus 34 ~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~D 113 (387)
T COG0045 34 AAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLD 113 (387)
T ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEE
T ss_conf 99981899679992253057666676688389899999999984866545768845428999746777643379999997
Q ss_pred CCCCEEEEEE-CC---CCCCCCCC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE---EE---C
Q ss_conf 8998899963-00---00001000---01013433732289889999999999999871834576468999---95---5
Q gi|254780439|r 277 IKGNCIVVCS-IE---NLDPMGVH---TGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFA---VN---P 343 (1162)
Q Consensus 277 ~~gn~i~v~~-~E---n~dp~GiH---tGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFA---v~---p 343 (1162)
....+..++. .| +++.+--+ +--...|-|...+.+-+ ++.++..+|++ |..-=|++ .. -
T Consensus 114 R~~~~p~~~~S~eGGmDIEeVa~~~PekI~~~~idp~~g~~~~~-------aR~la~~lgl~-~~~~~~~~~ii~~ly~~ 185 (387)
T COG0045 114 RSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQ-------ARELAFKLGLE-GELVKQVADIIKKLYKL 185 (387)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEEECCCCCCCHHH-------HHHHHHHCCCC-HHHHHHHHHHHHHHHHH
T ss_conf 37783799996677951899500283452689747766878779-------99999974998-78999999999999999
Q ss_pred -CCCEEEEEEECCCC
Q ss_conf -89849998504443
Q gi|254780439|r 344 -KNGKMVVIEMNPRV 357 (1162)
Q Consensus 344 -~~~~~yvIEvNpR~ 357 (1162)
.+.+.-.+|+||=+
T Consensus 186 f~~~Da~lvEINPLv 200 (387)
T COG0045 186 FVEKDATLVEINPLV 200 (387)
T ss_pred HHHCCCCEEEEECCE
T ss_conf 997587678752508
No 152
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=97.49 E-value=0.012 Score=38.62 Aligned_cols=235 Identities=12% Similarity=0.195 Sum_probs=130.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 99999998797899974876501078451310043379999999999862898899758870268888998875962882
Q gi|254780439|r 32 QACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRY 111 (1162)
Q Consensus 32 qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~ 111 (1162)
.-+.-+++.||..|.|+.|--=. +-..=| +-+--+|-+. ....|.+ ..+++
T Consensus 26 ~f~~~~~~~gi~~v~ID~~~pL~--~QGPfD-vilHKltd~~------------------------~~~~l~~--y~~~h 76 (307)
T pfam05770 26 SLAELARKRGIDLVQLDPSRPLS--EQGPFD-IIIHKLTDKE------------------------WRHRLEE--FREAH 76 (307)
T ss_pred HHHHHHHHCCCEEEECCCCCCHH--HCCCCE-EEEEECCHHH------------------------HHHHHHH--HHHHC
T ss_conf 99998976796799878999845--549826-9999656289------------------------9999999--99978
Q ss_pred -CCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -8757149989998605889999999987898886200023443333323333333444444443333222111111233
Q gi|254780439|r 112 -GVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWN 190 (1162)
Q Consensus 112 -~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1162)
++.+| -|+++|++.-||....+.+.++........+-.
T Consensus 77 P~v~vi-DP~~ai~~L~dR~~m~~~v~~l~~~~~~~~v~~---------------------------------------- 115 (307)
T pfam05770 77 PEVPVL-DPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGV---------------------------------------- 115 (307)
T ss_pred CCCEEE-CCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEC----------------------------------------
T ss_conf 997897-799999998789999999998106567983836----------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH--HCCCCEEEEECCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC-
Q ss_conf 44444445544489999999998--7199699941326786---64511169999999999899857998279866449-
Q gi|254780439|r 191 LEENDRKHRYICHAMAVAVQALD--EIGLPLIIRPSFTLGG---TGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVL- 264 (1162)
Q Consensus 191 ~~~~~~~~~~~~~s~~ea~~~a~--~iGyPvivRps~~lGG---~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~- 264 (1162)
+..-..-.+.++..+... .+.||+|+||--+-|- .-|.+++|++.|.+. . .++.+.+|+-
T Consensus 116 -----P~~v~i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Malvf~~~gL~~L-------~--pP~VlQefvNH 181 (307)
T pfam05770 116 -----PPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKL-------Q--PPLVLQEFVNH 181 (307)
T ss_pred -----CCEEEECCCHHHHHHHHHHCCCCCCEEECCHHCCCCCCCCEEEEEECHHHHHCC-------C--CCEEEEEEECC
T ss_conf -----977997286778899999759867656233002578565347899777576227-------9--97588987547
Q ss_pred CCEEEEEEEEEECCCCEEEEEECCCCCCCC------CCCCEEEEECCCC-------------CCCHHHHHHHHHHHHHHH
Q ss_conf 978999999972899889996300000010------0001013433732-------------289889999999999999
Q gi|254780439|r 265 GWKEYELEMMRDIKGNCIVVCSIENLDPMG------VHTGDSITVAPAL-------------TLTDKEYQLMRNAAIAVL 325 (1162)
Q Consensus 265 g~kEiE~eVirD~~gn~i~v~~~En~dp~G------iHtGDSi~vaP~q-------------TL~d~~~q~LR~~a~kI~ 325 (1162)
|..=+-+=|++|.. .|+.=-++-|+..-. .=+-.++.-+++. .+... ..+.+.|..+-
T Consensus 182 ~gvlfKvyVvGd~~-~vv~R~Slpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~~~~~~~~~~~p~~--~~~~~la~~LR 258 (307)
T pfam05770 182 GGVLFKVYVVGEHV-TVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKILEIAEMPPD--PFLEDLARALR 258 (307)
T ss_pred CCEEEEEEEECCEE-EEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCH--HHHHHHHHHHH
T ss_conf 86799999964378-9996467778773323465641331004677788622321356520239998--99999999999
Q ss_pred HHHCCCCCCCEEEEEEECCC-CEEEEEEECC
Q ss_conf 87183457646899995589-8499985044
Q gi|254780439|r 326 KEIGVESGGANVQFAVNPKN-GKMVVIEMNP 355 (1162)
Q Consensus 326 r~lgi~vG~~nVQFAv~p~~-~~~yvIEvNp 355 (1162)
++||+ -..|+-..++..+ ++||||-+|-
T Consensus 259 ~~lgL--~LFgfDvI~~~~t~~r~~VIDINy 287 (307)
T pfam05770 259 RALGL--RLFNFDIIRDAGTADRYLVIDINY 287 (307)
T ss_pred HHCCC--EEECEEEEEECCCCCEEEEEEECC
T ss_conf 98099--496648999889898589999067
No 153
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=97.48 E-value=0.0014 Score=46.04 Aligned_cols=340 Identities=18% Similarity=0.222 Sum_probs=192.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCC----CCEEECCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899988870986685421121566555655369-71675134444565----4125548999999999752101322111
Q gi|254780439|r 740 RFQKLLMELDLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGR----AMQIVYSENMLQDYLLDTLPGLVSEEIK 814 (1162)
Q Consensus 740 ~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~----~M~Iv~~~~eL~~yl~~a~~~~~~~~~~ 814 (1162)
...+++.+-|||.|++..|+|.+|+...+.+.| .++.|+..==-||| |-.+++|.+|+......-+. ..+.
T Consensus 7 qAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg----~~l~ 82 (389)
T TIGR01016 7 QAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLG----KELK 82 (389)
T ss_pred HHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHC----CEEE
T ss_conf 589999847896788600416789999999707997899987732671121576897087999999998708----9157
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEE-----CCCCHHCCCCCCEEEEECCCCCCHHH
Q ss_conf 1223333333345577774567022012010010102307984999852-----01102152457627981686689999
Q gi|254780439|r 815 RQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGII-----EHIEEAGIHSGDSACSLPSRSLSQQL 889 (1162)
Q Consensus 815 ~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gim-----EHiE~aGVHSGDS~~v~PpqsLs~~~ 889 (1162)
-=| +. ..--+-..||||+-++=.||+=+=++=|...-.+.-|. =.||+.=-.+=+-+.-++-.....-.
T Consensus 83 t~Q----t~--~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~idp~~~~~ 156 (389)
T TIGR01016 83 TFQ----TD--PLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAIDPLTGLL 156 (389)
T ss_pred EEE----CC--CCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 864----07--888634478732677412001477999804787179970677841789952195716888717777778
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEE---------ECCCEEEEEEECCCCCCCHHHHHHHHCC-CHHHHHHHHHCCC---
Q ss_conf 99999999999874133576247885---------1288599985244445630456777398-8999999998597---
Q gi|254780439|r 890 KDELISQTKALAGALNVIGLINVQYA---------IKDGKIYILEVNPRASRTVPFIAKAIGF-PVAKVAARIIAGE--- 956 (1162)
Q Consensus 890 ~~~i~~~t~~ia~~L~v~G~~NIQfa---------~kd~~iYVIEvNpRaSRtvPfvSKatG~-pl~~iAt~v~lG~--- 956 (1162)
=-++| .|++.++..+...-||. +.+.+.-.+|+||=. .|.. +|+-+=+|+-+-.
T Consensus 157 pYq~R----~~a~~~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLV---------iT~~G~L~alDAKl~~DDnAL 223 (389)
T TIGR01016 157 PYQAR----ELAKKLGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLV---------ITKDGNLVALDAKLTIDDNAL 223 (389)
T ss_pred CHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEE---------ECCCCCEEEEEEECCCCCCHH
T ss_conf 78999----99997089705778899999999998875371025452636---------878988899833224465510
Q ss_pred ----CCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHH-HCCCCCCCC
Q ss_conf ----210024666677776668738997203883445999867077563101377741999999999999-838879887
Q gi|254780439|r 957 ----SLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKSQL-GIGVDLPHE 1031 (1162)
Q Consensus 957 ----~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkSTGEVmgig~~~~eA~~Ka~~-a~g~~lP~~ 1031 (1162)
+|.++...... ..++--| |.--|+|-+| -|-+.|++.=-+.|+.--=+ ----.-|
T Consensus 224 FRH~~l~~~~D~~~~----~~~e~~A-~~~gL~Yv~L-------------dGnIGc~vNGAGLAMaTMDIiKl~GG~P-- 283 (389)
T TIGR01016 224 FRHPDLEEMEDYTQE----DQLEVEA-KQLGLNYVKL-------------DGNIGCMVNGAGLAMATMDIIKLYGGKP-- 283 (389)
T ss_pred CCCCCHHHHCCCCCC----CHHHHHH-HHHCCCEEEE-------------CCCEEEECCCHHHHHHHHHHHHHHCCCC--
T ss_conf 067116876388877----7337999-8618836885-------------4770797043567899999999718895--
Q ss_pred CEEEEEE-CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEECCCCC--C-----CCHHHHHHCCC--EEE
Q ss_conf 2599996-441289999999999988989999388899999879815697505687--8-----10788986798--549
Q gi|254780439|r 1032 GTVFVSV-RDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEG--R-----PHIEDAISNRQ--VHL 1101 (1162)
Q Consensus 1032 g~vfisv-~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~--~-----~~i~d~i~~~~--i~l 1101 (1162)
.-|+=| ..-+++.+-+-.+. .|.+..+++-.|+= .-| | .-+++.++... |=+
T Consensus 284 -ANFLDvGGGA~~e~v~eA~~~----------------vLsD~~VKvvfiNI-FGGI~RCD~vA~G~v~A~~~~~~~VP~ 345 (389)
T TIGR01016 284 -ANFLDVGGGASEERVKEALKL----------------VLSDKSVKVVFINI-FGGITRCDEVAKGLVEALKDVGVNVPV 345 (389)
T ss_pred -CEECCCCCCCCHHHHHHHHHH----------------HHCCCCCEEEEEEE-CCCEECHHHHHHHHHHHHHCCCCCCCE
T ss_conf -302245878898999999898----------------73599820899970-686001878878899998318853687
Q ss_pred EEECCCCCCCCCCHHHHHHHHH--HCCCCEEECHH-HHHHHHHH
Q ss_conf 9967899852311089999999--70997994599-99999999
Q gi|254780439|r 1102 VINTTEGKKAIEDSKSLRRATL--IRKIPYYTTIA-GADAVFQA 1142 (1162)
Q Consensus 1102 VINt~~~~~~~~dg~~iRr~Ai--~~~ip~~T~~~-~a~a~~~a 1142 (1162)
||=+.. .+ .+-|.+|=+.+= ..+|+..|+++ +|+-++++
T Consensus 346 VvRL~G-TN-~E~G~~iL~e~gkdr~ni~~~~sm~~aA~kaV~~ 387 (389)
T TIGR01016 346 VVRLEG-TN-VEEGKKILQESGKDRLNIIFATSMEEAAEKAVEL 387 (389)
T ss_pred EEECCC-CC-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 898157-88-7888899997276778863226878899999998
No 154
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.44 E-value=0.0035 Score=43.02 Aligned_cols=140 Identities=24% Similarity=0.338 Sum_probs=100.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999998789888620002344333332333333344444444333322211111123344444445544489999999
Q gi|254780439|r 131 LFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQ 210 (1162)
Q Consensus 131 ~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~ 210 (1162)
+-++++.+.|+|+|++.+++ +.+|+.+
T Consensus 7 qaKell~~~gIpvp~g~v~~-----------------------------------------------------~~~ea~~ 33 (388)
T PRK00696 7 QAKELLAEYGVPVPRGYVAF-----------------------------------------------------TPEEAVE 33 (388)
T ss_pred HHHHHHHHCCCCCCCCEEEC-----------------------------------------------------CHHHHHH
T ss_conf 99999998699899973779-----------------------------------------------------9999999
Q ss_pred HHHHCCCCE-EEEECCCCCCCCC----CCCCCHHHHHHHHHHHHH-----------HCCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 998719969-9941326786645----111699999999998998-----------579982798664499789999999
Q gi|254780439|r 211 ALDEIGLPL-IIRPSFTLGGTGG----GIAYNRSEFLEIVENGLH-----------ASPTTEVLIEESVLGWKEYELEMM 274 (1162)
Q Consensus 211 ~a~~iGyPv-ivRps~~lGG~G~----~iv~n~eeL~~~~~~al~-----------~s~~~~vlIeksl~g~kEiE~eVi 274 (1162)
+++++|+|. +||+----||||- .+|.|.+|..+..++-+. --+.+.||||+.+.--||+=+-++
T Consensus 34 ~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~QTg~~G~~V~~vlvee~~~i~~E~Ylsi~ 113 (388)
T PRK00696 34 AAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQTGPEGQPVNRLLIEEGADIAKELYLSAV 113 (388)
T ss_pred HHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEEEEEECCCHHHHEEEEEE
T ss_conf 99982999589998054588886860799089999999999985677421015888844479998751661240689999
Q ss_pred EECCCCEE-EEEECC---CCCCCCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 72899889-996300---00001000010134---3373228988999999999999987183
Q gi|254780439|r 275 RDIKGNCI-VVCSIE---NLDPMGVHTGDSIT---VAPALTLTDKEYQLMRNAAIAVLKEIGV 330 (1162)
Q Consensus 275 rD~~gn~i-~v~~~E---n~dp~GiHtGDSi~---vaP~qTL~d~~~q~LR~~a~kI~r~lgi 330 (1162)
-|..-.+. ++++.| ++|.+--.+-|.|. +-|..-+++.+ +.+++..+|+
T Consensus 114 ~DR~~~~~~~i~S~~GG~dIEevA~~~Pe~I~k~~idp~~gl~~~~-------~r~i~~~lgl 169 (388)
T PRK00696 114 VDRATRRVVFMASTEGGMEIEEVAEETPEKIHKVAVDPLVGLQPYQ-------AREIAFKLGL 169 (388)
T ss_pred EECCCCCEEEEEECCCCCCHHHHHHHCHHHEEEEECCCCCCCCHHH-------HHHHHHHCCC
T ss_conf 8647785799998887987999865291238999757777989999-------9999998299
No 155
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=97.43 E-value=8.8e-05 Score=55.67 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=5.7
Q ss_pred HHHHHCCCCCCC
Q ss_conf 999987898886
Q gi|254780439|r 134 KAMQNIPLATPK 145 (1162)
Q Consensus 134 ~~l~~~gip~~~ 145 (1162)
+++.+.|+|+.+
T Consensus 37 k~l~eaGi~V~~ 48 (515)
T COG0138 37 KLLAEAGIPVTE 48 (515)
T ss_pred HHHHHCCCCCCC
T ss_conf 999967997771
No 156
>TIGR00160 MGSA methylglyoxal synthase; InterPro: IPR004363 Methylglyoxal synthase (MGS) catalyzes the conversion of dihydroxyacetone phosphate to methylglyoxal and phosphate: Glycerone phosphate = methylglyoxal + phosphate It provides bacteria with an alternative to triosephosphate isomerase for metabolizing dihydroxyacetone phosphate. MGS is a small protein of about 13 to 17 kDa. An aspartate residue is involved in the catalytic mechanism. Methylglyoxal synthase contains a domain shared by other enzymes. Other proteins containing this domain include purine biosynthesis protein PurH and carbamoyl phosphate synthetase.; GO: 0008929 methylglyoxal synthase activity, 0019242 methylglyoxal biosynthetic process, 0005737 cytoplasm.
Probab=97.33 E-value=0.00051 Score=49.62 Aligned_cols=125 Identities=25% Similarity=0.342 Sum_probs=96.7
Q ss_pred EEECCHHHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCEEEEEEC-CCCCCCCHHHHHHCCCEEEEEEC--CCCC
Q ss_conf 996441289999999999988--98999938889999987-981569750-56878107889867985499967--8998
Q gi|254780439|r 1036 VSVRDADKKRIVPIIQNFKKL--GFKIMATEGTARFLESH-GLETQKINK-VLEGRPHIEDAISNRQVHLVINT--TEGK 1109 (1162)
Q Consensus 1036 isv~d~dK~~~~~~a~~l~~l--Gf~l~AT~GTa~~L~~~-Gi~~~~v~k-~~e~~~~i~d~i~~~~i~lVINt--~~~~ 1109 (1162)
+.-.|+-|+.++.-+++..++ -|.||||.-|...+++. |+.+..+.= +..|---|=-.|.+|+|++||=. |-..
T Consensus 7 LiAHD~kK~~Lvnfv~~h~~~L~~h~LyATGTTG~~i~~~TGL~i~~~~SGPmGGDqQiGa~Iaeg~Id~~IFf~~PL~A 86 (143)
T TIGR00160 7 LIAHDKKKQDLVNFVQQHKELLKKHDLYATGTTGELIERATGLAIEKLLSGPMGGDQQIGALIAEGKIDAVIFFRDPLNA 86 (143)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 22351346889999999898754164553166627766520770110056899624678999861226544503300147
Q ss_pred CCC-CCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCEEECHHHC
Q ss_conf 523-110899999997099799459999999999996105897177745531
Q gi|254780439|r 1110 KAI-EDSKSLRRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSYR 1160 (1162)
Q Consensus 1110 ~~~-~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al~~~~~~~~~v~slqey~ 1160 (1162)
++- -|=..+=|.|-=|+||+=||+.||+.+++++..-+..+..|-..+.|-
T Consensus 87 qPHEPDV~ALlRLc~V~nIPlAtN~~TA~~li~~~~f~~~~~~~~~~y~~~L 138 (143)
T TIGR00160 87 QPHEPDVKALLRLCDVYNIPLATNVATADILIKSLLFEKTVDILVFDYEGYL 138 (143)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 8888007889878645025034405667887730353432212463314421
No 157
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=97.22 E-value=0.0053 Score=41.58 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=87.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999998789888620002344333332333333344444444333322211111123344444445544489999999
Q gi|254780439|r 131 LFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQ 210 (1162)
Q Consensus 131 ~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~ 210 (1162)
+.++++.+-|+|+|++++++ |.+|+-.
T Consensus 7 qAK~if~~YGiPvp~g~v~~-----------------------------------------------------s~~e~~~ 33 (389)
T TIGR01016 7 QAKEIFAKYGIPVPEGEVAT-----------------------------------------------------SVEEVEE 33 (389)
T ss_pred HHHHHHHHCCCCCCCCCEEE-----------------------------------------------------CHHHHHH
T ss_conf 58999984789678860041-----------------------------------------------------6789999
Q ss_pred HHHHCC-CCEEEEECCCCCCCC----CCCCCCHHHHHHHHHHHHH-----------HCCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 998719-969994132678664----5111699999999998998-----------579982798664499789999999
Q gi|254780439|r 211 ALDEIG-LPLIIRPSFTLGGTG----GGIAYNRSEFLEIVENGLH-----------ASPTTEVLIEESVLGWKEYELEMM 274 (1162)
Q Consensus 211 ~a~~iG-yPvivRps~~lGG~G----~~iv~n~eeL~~~~~~al~-----------~s~~~~vlIeksl~g~kEiE~eVi 274 (1162)
++.+.| .|++||+===-|||| -.+|+|.||+.+..++-|. .-|.++||||+-+.=-||+=+=++
T Consensus 34 ~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t~Qt~~~g~~VnkiliE~~~~I~kEyY~s~v 113 (389)
T TIGR01016 34 IAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKTFQTDPLGQPVNKILIEEKIDIDKEYYLSIV 113 (389)
T ss_pred HHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEE
T ss_conf 99970799789998773267112157689708799999999870891578640788863447873267741200147799
Q ss_pred EECCCCEEEE
Q ss_conf 7289988999
Q gi|254780439|r 275 RDIKGNCIVV 284 (1162)
Q Consensus 275 rD~~gn~i~v 284 (1162)
=|..-.|+.+
T Consensus 114 ~DR~~~~pv~ 123 (389)
T TIGR01016 114 IDRSAKKPVI 123 (389)
T ss_pred EEECCCCCEE
T ss_conf 9804787179
No 158
>PRK12458 glutathione synthetase; Provisional
Probab=96.97 E-value=0.04 Score=34.64 Aligned_cols=201 Identities=20% Similarity=0.254 Sum_probs=125.9
Q ss_pred HHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCCEEECC
Q ss_conf 88887598386127520331028678999888709866854211215665556553697-16751344445654125548
Q gi|254780439|r 715 KILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF-PLLIRPSYVLGGRAMQIVYS 793 (1162)
Q Consensus 715 ~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGy-PVLVRPSyVLGG~~M~Iv~~ 793 (1162)
...++.|+.++--+ .++-.+-.+-.+.++.+- -.|+.-...+.++..+|.++.+. .++++|-+.-||++-..+..
T Consensus 114 ~~~~~~gv~VIN~P-~slR~~nEKL~~~~Fp~~---i~P~TLVT~d~~~I~~F~~~~k~~~iIlKPL~G~GG~gIf~i~~ 189 (349)
T PRK12458 114 RLAMRDGVLVLNDP-DGLRIANNKLYFQSFPEE---VRPTTHISRNREEIRAFLEESPSDKMILKPLQGSGGQGVFLIEK 189 (349)
T ss_pred HHHHHCCCEEECCH-HHHHCCCCHHHHHHCCCC---CCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC
T ss_conf 87650898898185-998617012006415554---79877986799999999998158838986467888876388635
Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEE----EEEEECCCC
Q ss_conf 9--9999999975210132211112233333333455777745670220120100101023079849----998520110
Q gi|254780439|r 794 E--NMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVI----VVGIIEHIE 867 (1162)
Q Consensus 794 ~--~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~----I~gimEHiE 867 (1162)
. .-|...++.. +...+|.+.+||...++=|.-++==+++.+ +.|-+-++-
T Consensus 190 ~d~~Nl~~I~e~~------------------------~~~~~vm~Q~flpei~~GDkRIilinGepi~~~~~~gal~RiP 245 (349)
T PRK12458 190 SAESNLNQILEFY------------------------SGDGYVIAQEYIPGAEEGDVRILMLNGEPLERDGRYAAMRRVP 245 (349)
T ss_pred CCHHHHHHHHHHH------------------------HCCCCEEEECCCHHCCCCCEEEEEECCEEECCCCCEEEEECCC
T ss_conf 7434199999997------------------------0488199992100341688699999999911445413565356
Q ss_pred HHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHC
Q ss_conf 215-----245762798168668999999999999999874133576247885128859998524444563045677739
Q gi|254780439|r 868 EAG-----IHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIG 942 (1162)
Q Consensus 868 ~aG-----VHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG 942 (1162)
+.| .|.|-... +..|++..++-+. +++..|.=.|++=+=.=+=++ |++|+|--+---+.=+.+.+|
T Consensus 246 ~~gd~R~Nl~~GG~~~---~~~Lt~~d~~I~~----~i~p~L~~~gl~fvGiDvIG~--~LtEINVTSPtgi~ei~~~~~ 316 (349)
T PRK12458 246 AEGDVRSNIHAGGTVV---KHTLTKEELELCE----HIRPKLVRDGLFFVGLDIVGD--KLIEVNVFSPGGLGRINKLNN 316 (349)
T ss_pred CCCCHHHHHHCCCCCC---CCCCCHHHHHHHH----HHHHHHHHCCCEEEEEEEECC--CEEEECCCCCHHHHHHHHHHC
T ss_conf 6761355652688630---3688999999999----999999987998999986178--456881789602999987519
Q ss_pred CCHHHHHHHH
Q ss_conf 8899999999
Q gi|254780439|r 943 FPVAKVAARI 952 (1162)
Q Consensus 943 ~pl~~iAt~v 952 (1162)
+++++..-..
T Consensus 317 ~~~a~~~~d~ 326 (349)
T PRK12458 317 VDFSETIINA 326 (349)
T ss_pred CCHHHHHHHH
T ss_conf 9869999999
No 159
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.83 E-value=0.02 Score=36.97 Aligned_cols=225 Identities=15% Similarity=0.206 Sum_probs=113.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 97766556999976775420505466688899999999879789997487650107845131004337999999999986
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEK 80 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~ 80 (1162)
||. .||||-|||+|.. |.+....+--.|++|++++.||+.+..-.....+ ++.-++......++.+
T Consensus 1 M~~--~Ik~VaViGAG~M-----------G~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~-~l~~~~~~~~~~~~~~ 66 (310)
T PRK06130 1 MDN--PIQNLAIIGAGAM-----------GSGIAALFASKGLDVVLIDPMPGALERAAQVIER-QLGVYAPGAIAGTLQR 66 (310)
T ss_pred CCC--CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHH
T ss_conf 989--9888989787799-----------9999999985899889997999999999999999-8653276669998741
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHH--------HHCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998--------6058899999999878988862000234
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETID--------KAEDRSLFSKAMQNIPLATPKSILANAT 152 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~--------~~edR~~F~~~l~~~gip~~~s~~~~~~ 152 (1162)
- + ..++.+++. ..||-+.=+++..++.--+++..+..+.
T Consensus 67 i--------------------------------~-~~~~l~a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlASN 113 (310)
T PRK06130 67 I--------------------------------R-MDAGLEAACGADLVIEAVPEKLDLKRDIFARLDTLCDPQTIFATN 113 (310)
T ss_pred E--------------------------------E-ECCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 0--------------------------------2-137888966899999888177899999999986068988389964
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEC
Q ss_conf 433333233333334444444433332221111-------1123344444445544489999999998719-96999413
Q gi|254780439|r 153 DIKEHDRKLHEEERENLKKTLSKEELDAALYAL-------ELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPS 224 (1162)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps 224 (1162)
+ +.. ..+-+.+.......-+ ......+|.+++..-.-..++.+.++++++| -||+++..
T Consensus 114 T-Ssl------------~is~ia~~~~~p~R~ig~HffnP~~~m~LVEIv~g~~Ts~~~~~~~~~~~~~~gk~pvvv~kd 180 (310)
T PRK06130 114 T-SGL------------SINAIAQAVTRRERFVGTHFFTPADVIPLVEVVRNDDTSPQTVATVMAMLRSIGKRPVLVKKD 180 (310)
T ss_pred C-CCC------------CCHHHHHHCCCHHHEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8-877------------606788863898781554443776776665223789898999999999999719879998866
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEE-EEEECCCCCCCCCCCCEE
Q ss_conf 2678664511169999999999899857998279866449978999999972899889-996300000010000101
Q gi|254780439|r 225 FTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCI-VVCSIENLDPMGVHTGDS 300 (1162)
Q Consensus 225 ~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i-~v~~~En~dp~GiHtGDS 300 (1162)
.+ +-|++.. +..+..+|+.. +++-+....+|+- +++..-|--+ ..|-.+-.|-+|..+.-.
T Consensus 181 ~p-----GFi~NRl--~~~~~~EA~~l-------v~eGvas~edID~-~~~~~~G~~~~~~GPf~l~D~vGLDv~~~ 242 (310)
T PRK06130 181 IP-----GFIANRI--QHALAREAISL-------LEKGVASAEDIDE-VVKWSLGIRLALTGPLEQRDMNGLDVHLA 242 (310)
T ss_pred CC-----CCCHHHH--HHHHHHHHHHH-------HHCCCCCHHHHHH-HHHHCCCCCCCCCCCHHHCCCCCHHHHHH
T ss_conf 58-----8018888--99999999999-------9839999999999-86756899988898315104142989999
No 160
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=96.73 E-value=0.06 Score=33.24 Aligned_cols=187 Identities=17% Similarity=0.278 Sum_probs=105.6
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCC-------CCCCCCC-CHHHHHHHHHH--CCCCEEEEC
Q ss_conf 6689888887598386127520331028678999888709866-------8542112-15665556553--697167513
Q gi|254780439|r 710 PLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQ-------PRNGISH-SVEHARLIACE--IGFPLLIRP 779 (1162)
Q Consensus 710 ~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~-------p~~~~a~-s~eea~~~a~~--iGyPVLVRP 779 (1162)
-.+|..-.+++.--++=-++++|..-=||.+-.+++.+++... |+.-.+. +.++..+...+ +.||++++|
T Consensus 66 ~~~l~~y~~~hP~v~viDP~~ai~~L~dR~~m~~~v~~l~~~~~~~~v~~P~~v~i~~d~~~~~~~l~~agL~fPlI~KP 145 (307)
T pfam05770 66 RHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKP 145 (307)
T ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99999999978997897799999998789999999998106567983836977997286778899999759867656233
Q ss_pred CCCCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEEEEEECC
Q ss_conf 4444565---412554899999999975210132211112233333333455777745670220120-100101023079
Q gi|254780439|r 780 SYVLGGR---AMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDA-MEIDVDALCQND 855 (1162)
Q Consensus 780 SyVLGG~---~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a-~EiEVDai~Dg~ 855 (1162)
.-.-|.. .|.+|+|++.|.+ + ..|+++.+|+..+ +=+-|=++.|.-
T Consensus 146 lvA~Gsa~SH~Malvf~~~gL~~----------------------------L--~pP~VlQefvNH~gvlfKvyVvGd~~ 195 (307)
T pfam05770 146 LVADGTAKSHEMSLVYDQEGLNK----------------------------L--QPPLVLQEFVNHGGVLFKVYVVGEHV 195 (307)
T ss_pred HHCCCCCCCCEEEEEECHHHHHC----------------------------C--CCCEEEEEEECCCCEEEEEEEECCEE
T ss_conf 00257856534789977757622----------------------------7--99758898754786799999964378
Q ss_pred CEEEEEEE-----------------CCCCHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 84999852-----------------01102152457627981--686689999999999999998741335762478851
Q gi|254780439|r 856 QVIVVGII-----------------EHIEEAGIHSGDSACSL--PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI 916 (1162)
Q Consensus 856 ~v~I~gim-----------------EHiE~aGVHSGDS~~v~--PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~ 916 (1162)
.++.--=+ .++......+-++..-. ....+.+ .+.+++.+..+-++||.. +||+-.++
T Consensus 196 ~vv~R~Slpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~~~~~~~~~~~p~--~~~~~~la~~LR~~lgL~-LFgfDvI~ 272 (307)
T pfam05770 196 TVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKILEIAEMPP--DPFLEDLARALRRALGLR-LFNFDIIR 272 (307)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCC--HHHHHHHHHHHHHHCCCE-EECEEEEE
T ss_conf 999646777877332346564133100467778862232135652023999--899999999999980994-96648999
Q ss_pred CC---CEEEEEEECCC
Q ss_conf 28---85999852444
Q gi|254780439|r 917 KD---GKIYILEVNPR 929 (1162)
Q Consensus 917 kd---~~iYVIEvNpR 929 (1162)
.+ +.+|||-+|=-
T Consensus 273 ~~~t~~r~~VIDINyF 288 (307)
T pfam05770 273 DAGTADRYLVIDINYF 288 (307)
T ss_pred ECCCCCEEEEEEECCC
T ss_conf 8898985899990679
No 161
>KOG2555 consensus
Probab=96.70 E-value=0.0014 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=10.0
Q ss_pred EEEECCCCCCCCCCCCCC---EEEE
Q ss_conf 996068652112324586---3798
Q gi|254780439|r 656 IMINCNPETVSTDYDIAD---RLYF 677 (1162)
Q Consensus 656 ImIN~NPETVSTDyd~sD---rLYF 677 (1162)
+.-..||.-+.----.|| |+||
T Consensus 261 sfKHvsPaGaAvg~pls~~e~kv~~ 285 (588)
T KOG2555 261 SFKHVSPAGAAVGLPLSDVEAKVYF 285 (588)
T ss_pred EECCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 0102376411026766545532001
No 162
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.63 E-value=0.029 Score=35.67 Aligned_cols=144 Identities=24% Similarity=0.251 Sum_probs=94.7
Q ss_pred CCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHH
Q ss_conf 2235677741899727630201476653189999999996598069960686521123245-863798416788999999
Q gi|254780439|r 611 SEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDI-ADRLYFESLTEEDILEIL 689 (1162)
Q Consensus 611 ~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~-sDrLYFEplt~E~V~~I~ 689 (1162)
......++++|.|.|-| |. ..+|++-+|.+|.++|.+.-|++...---.+ +|..|-- - .++..+.+
T Consensus 160 k~~~~~pG~~V~I~G~G----Gl-------Gh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~-~-~~~~~~~~ 226 (339)
T COG1064 160 KKANVKPGKWVAVVGAG----GL-------GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS-S-DSDALEAV 226 (339)
T ss_pred HHCCCCCCCEEEEECCC----HH-------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEC-C-CCHHHHHH
T ss_conf 65389999899998774----89-------999999999869969999578779999998488289976-7-81166776
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHH-HHHCC-CEEEECCC-CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 874856782279984451246689888-88759-83861275-2033102867899988870986685421121566555
Q gi|254780439|r 690 RVEQQKGELVGIIVQFGGQTPLKLSKI-LEKNQ-IPILGTQP-DSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARL 766 (1162)
Q Consensus 690 ~~E~p~g~~~~vi~q~gGqt~~~la~~-L~~~g-v~ilGts~-~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~ 766 (1162)
... . ..++...+ +..++.+.+ |...| +.+.|-.. ..+ -...-|.-++++..|.=--.+.....+|+++
T Consensus 227 ~~~-~----d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~---~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~ 297 (339)
T COG1064 227 KEI-A----DAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPI---PLLPAFLLILKEISIVGSLVGTRADLEEALD 297 (339)
T ss_pred HHH-C----CEEEECCC-HHHHHHHHHHHHCCCEEEEECCCCCCCC---CCCCHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 734-7----39999877-4559999998642978999788887666---6678778632670899972489999999999
Q ss_pred HHHHCC-CCEE
Q ss_conf 655369-7167
Q gi|254780439|r 767 IACEIG-FPLL 776 (1162)
Q Consensus 767 ~a~~iG-yPVL 776 (1162)
|+.+-+ .|.+
T Consensus 298 f~~~g~Ikp~i 308 (339)
T COG1064 298 FAAEGKIKPEI 308 (339)
T ss_pred HHHHCCCEEEE
T ss_conf 99818943248
No 163
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.54 E-value=0.038 Score=34.78 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=84.5
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHC----
Q ss_conf 5699997677542050546668889999999987978999748765010784513100433799999999998628----
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKER---- 82 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~---- 82 (1162)
||||-|||+|-+ |+.-.-.+-..|++|.+.+++|+. .+ .+.+++...+
T Consensus 2 IkkVAVIGAGvM-----------GsGwAa~FA~aG~~V~L~Dp~peA--------~~---------ki~~~l~~a~~al~ 53 (489)
T PRK07531 2 IMKAACIGGGVI-----------GGGWAARFLLNGWDVAVFDPHPEA--------ER---------IIGEVLANARRALP 53 (489)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHH--------HH---------HHHHHHHHHHHHHH
T ss_conf 767999871886-----------899999999579969999488789--------99---------99999999999877
Q ss_pred --CCEEEECCCC-CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC
Q ss_conf --9889975887-026888899887596288287571499899986058899999999878988862000-234433333
Q gi|254780439|r 83 --PDAILPTTGG-QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILA-NATDIKEHD 158 (1162)
Q Consensus 83 --pDaIlp~~GG-qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~-~~~~~~~~~ 158 (1162)
.++-++..|- +..-+|...+.......+. -.|+-+.=+++..++.--+++..+. ++|+
T Consensus 54 ~L~~~~l~~~grL~~~~sL~eAV~dADlVqEa-------------VPE~LdIKq~vf~eLd~~~~~~aIiASsTS----- 115 (489)
T PRK07531 54 GLTDAPLPPEGRLSFCASLAEAVAGADWIQES-------------VPERLDLKHKVLAEIEAAARPDALIGSSTS----- 115 (489)
T ss_pred HHHCCCCCCCCCEEECCCHHHHHCCCCEEEEC-------------CCCCHHHHHHHHHHHHHHCCCCCEEEECCC-----
T ss_conf 53203556467768638899997479999987-------------856699999999999976799838985366-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEC
Q ss_conf 233333334444444433332221111112-------3344444445544489999999998719-96999413
Q gi|254780439|r 159 RKLHEEERENLKKTLSKEELDAALYALELK-------WNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPS 224 (1162)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps 224 (1162)
++.++.+.+.......-+..+ ...+|.+++.+-....++.|.++.+.+| .||.+|--
T Consensus 116 ---------gl~~S~l~~~~~~peR~iv~HpfNPp~L~PLVEvV~g~~T~~~~v~~a~~~~~~iG~~Pv~v~kE 180 (489)
T PRK07531 116 ---------GFKPSELQEGMTHPERIFVAHPFNPVYLLPLVELVGGGKTSPETIERAKEILREIGMKPVHIAKE 180 (489)
T ss_pred ---------CCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf ---------58899998655895506884346873447627981688889999999999999829843697000
No 164
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.28 E-value=0.1 Score=31.32 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 6777418997276302014766531899999999965980699606865211
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVS 666 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVS 666 (1162)
...++.|+|+|+||+ | .-++..+|..|-+.|.+-.||+-..
T Consensus 164 v~~g~~V~V~G~G~i--G---------l~a~~~ak~~Ga~Vi~vd~~~~rle 204 (349)
T TIGR03201 164 LKKGDLVIVIGAGGV--G---------GYMVQTAKAMGAAVVAIDIDPEKLE 204 (349)
T ss_pred CCCCCEEEEECCCHH--H---------HHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 899988999897489--9---------9999999985997999949999999
No 165
>PRK07660 consensus
Probab=96.27 E-value=0.034 Score=35.13 Aligned_cols=227 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCC-----CEEECCCCHHHHHHHHHH
Q ss_conf 556999976775420505466688899999999879789997487650107845131-----004337999999999986
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD-----ATYTEPITPEVVAKIIEK 80 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD-----~vY~ePlt~e~v~~Ii~~ 80 (1162)
+||||.|||+|-. |.+....+-..|++|+|.+.||+.+..-....- .+--..++......++.+
T Consensus 2 ~Ik~VaViGaG~M-----------G~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 70 (283)
T PRK07660 2 GVQKIVVIGAGQM-----------GSGIAQVCAMAGYDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNR 70 (283)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 9788999896989-----------99999999966981899979889999999999999999987058998999999835
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 289889975887026888899887596288287571499899986058899999999878988862000-2344333332
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILA-NATDIKEHDR 159 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~-~~~~~~~~~~ 159 (1162)
+-..+-++ .+.+... ++=+ -.||-+.=+++..++.--+++..+. +.|+.....
T Consensus 71 ---------i~~~~~~~---~~~~aDl-------ViEa------v~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~- 124 (283)
T PRK07660 71 ---------LTVTLDLD---CVKEADL-------IIEA------AVEKMDIKKKIFANLDEIAPEHAILATNTSSLPIT- 124 (283)
T ss_pred ---------CCCCCCHH---HHCCCCE-------EEEC------CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH-
T ss_conf ---------87768989---9768999-------9987------85754442999999996479971898658888732-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCC
Q ss_conf 33333334444444433332221111-------1123344444445544489999999998719-969994132678664
Q gi|254780439|r 160 KLHEEERENLKKTLSKEELDAALYAL-------ELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTG 231 (1162)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG~G 231 (1162)
-+.+.......-+ ......+|.+++..-....++.+.++++++| .||+++-. -
T Consensus 125 -------------~ia~~~~~p~R~ig~HffnP~~~m~LVEIv~g~~T~~~~~~~~~~~~~~lgk~pV~v~d~------p 185 (283)
T PRK07660 125 -------------EIAAVTKRPEKVIGMHFMNPVPVMKLVEIIRGLATDDAVYETIEDITKKIGKVPVEVNDF------P 185 (283)
T ss_pred -------------HHHHHCCCCHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCC------C
T ss_conf -------------556651782430466667885657215456999997999999999998759427998378------9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 511169999999999899857998279866449978999999972899889996300000010000101
Q gi|254780439|r 232 GGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 (1162)
Q Consensus 232 ~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDS 300 (1162)
+-|++.. +..++.+|+. ++++-+...++|+ .+++..-|.- .|-.+-.|-+|..+.-.
T Consensus 186 GFi~NRl--~~~~~~ea~~-------lv~eGva~~e~iD-~~~~~g~g~p--~GPf~l~D~vGLD~~~~ 242 (283)
T PRK07660 186 GFVSNRI--LLPMINEAIY-------TLYEGVATKEAID-EVMKLGMNHP--MGPLTLADFIGLDTCLY 242 (283)
T ss_pred CCHHHHH--HHHHHHHHHH-------HHHCCCCCHHHHH-HHHHHCCCCC--CCHHHHHHHHHHHHHHH
T ss_conf 7327987--8999999999-------9981999999999-9867577982--56989886644899999
No 166
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.22 E-value=0.017 Score=37.56 Aligned_cols=133 Identities=16% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 74189972763020147665318999999999659806996068652112324586379841678899999987485678
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGE 697 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~ 697 (1162)
.+.++|.|-| |+|| ..++.|++.|++.+.|-.||+.|..--.-..+.||---+-+++++=...++.+.
T Consensus 417 ~~hvii~G~G--r~G~---------~va~~L~~~~~~~vvid~d~~~v~~~~~~g~~v~~GDa~~~~~L~~agi~~A~~- 484 (558)
T PRK10669 417 CNHALLVGYG--RVGS---------LLGEKLLASGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARW- 484 (558)
T ss_pred CCCEEEECCC--HHHH---------HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCE-
T ss_conf 7998998988--6699---------999999987998899989899999999689979997899889998579132499-
Q ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 22799844512466-898888875983861275203310286789998887098668542112156655565536971
Q gi|254780439|r 698 LVGIIVQFGGQTPL-KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 698 ~~~vi~q~gGqt~~-~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyP 774 (1162)
+++.+.-.... ++.....+.+ +...-+-+|.|++.-. .|++.|.... .....+-+...++-+.=|
T Consensus 485 ---vvit~~d~~~~~~iv~~~r~~~-----p~~~IiaRa~~~~~~~-~L~~aGA~~V---V~~~~e~a~~m~e~l~~p 550 (558)
T PRK10669 485 ---LLLTIPNGYEAGEIVASAREKN-----PDIEIIARAHYDDEVA-YITERGANQV---VMGEREIARTMLELLETP 550 (558)
T ss_pred ---EEEEECCHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHH-HHHHCCCCEE---ECCHHHHHHHHHHHHCCC
T ss_conf ---9998198899999999999878-----6986999979899999-9997799989---893789999999985799
No 167
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.21 E-value=0.025 Score=36.29 Aligned_cols=101 Identities=19% Similarity=0.331 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCC-CCEEE-EEECCHHHHHHHHHHH
Q ss_conf 77741899727630201476653189999999996598069-960686521123245-86379-8416788999999874
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETI-MINCNPETVSTDYDI-ADRLY-FESLTEEDILEILRVE 692 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tI-mIN~NPETVSTDyd~-sDrLY-FEplt~E~V~~I~~~E 692 (1162)
...++|+|+|+||. | ..+++.+|..|.+.| .+..||+-...--.. +|..+ ......+++..+....
T Consensus 159 ~~g~~vlV~GaG~v--G---------l~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGAd~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 159 CEGKNVIIIGAGTI--G---------LLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCEEEEECCCCH--H---------HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCC
T ss_conf 88986999899838--9---------999999998599769999289999999997299899868877999999986299
Q ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCC--CEEEECCCCH
Q ss_conf 856782279984451-24668988888759--8386127520
Q gi|254780439|r 693 QQKGELVGIIVQFGG-QTPLKLSKILEKNQ--IPILGTQPDS 731 (1162)
Q Consensus 693 ~p~g~~~~vi~q~gG-qt~~~la~~L~~~g--v~ilGts~~~ 731 (1162)
+. ..++.-..| ...++.+..+-+.+ +-++|.....
T Consensus 228 ~~----d~vvid~~G~~~~~~~a~~~~~~~G~iv~~G~~~~~ 265 (347)
T PRK10309 228 RF----DQLILETAGVPQTVELAIEIAGPRAQLALVGTLHQD 265 (347)
T ss_pred CC----CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 88----869997999989999999961897499998057888
No 168
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=96.20 E-value=0.069 Score=32.74 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=63.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 99997677542050546668889999999987--9789997487650107845131004337999999999986289889
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEE--GYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~--Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaI 86 (1162)
||||||||.= -.--+++|++. ..++.....||.+-. .+...-+.+.+.+.+.+.++.+++|-+
T Consensus 1 kILvIGsGgR-----------EHAi~~~l~~s~~~~~l~~~pgN~gi~~----~~~~~~i~~~d~~~i~~~~~~~~idlv 65 (99)
T pfam02844 1 KVLVVGSGGR-----------EHALAWKLAQSPRVEKVYVAPGNPGTAQ----LAKNVNIDITDFEALADFAKEENIDLV 65 (99)
T ss_pred CEEEECCCHH-----------HHHHHHHHHCCCCCCEEEEECCCCHHHH----HCEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9899878879-----------9999999964999776999589815777----475014584479999999998197499
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHH
Q ss_conf 9758870268888998875962882875714998999
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETI 123 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I 123 (1162)
+.+=-.- |+.-|.+ .|.++||+..|++.++=
T Consensus 66 iiGPE~p----L~~Gl~D--~l~~~gi~vfGP~k~aA 96 (99)
T pfam02844 66 VVGPEAP----LVAGIVD--ALRAAGIPVFGPSKAAA 96 (99)
T ss_pred EECCCHH----HHHHHHH--HHHHCCCEEECCCHHHH
T ss_conf 9896067----7878899--99868991799286887
No 169
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=96.13 E-value=0.066 Score=32.92 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCCEEEECCC
Q ss_conf 99999998628988997588
Q gi|254780439|r 72 EVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 72 e~v~~Ii~~E~pDaIlp~~G 91 (1162)
.-+.++|++++||.|+.|+.
T Consensus 94 ~kl~~~L~~~kPDvII~T~P 113 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFP 113 (391)
T ss_pred HHHHHHHHHHCCCEEEECCH
T ss_conf 99999999849299999982
No 170
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=96.10 E-value=0.012 Score=38.85 Aligned_cols=107 Identities=19% Similarity=0.384 Sum_probs=71.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEC-CCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9997677542050546668889999999987978999748765010784513100433-799999999998628988997
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE-PITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~e-Plt~e~v~~Ii~~E~pDaIlp 88 (1162)
|+|+|.|.+ |.+.++.|++.| ++++|..||..+..=.+....+++. +...+.+.+ +..++.|+++.
T Consensus 1 viI~G~g~~-----------G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~-a~i~~a~~vi~ 67 (115)
T pfam02254 1 IIIIGYGRV-----------GRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEE-AGIEDADAVVA 67 (115)
T ss_pred CEEECCCHH-----------HHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHH-HCCCCCCEEEE
T ss_conf 999878889-----------999999998089-99999998799877886698699995688667876-19202879999
Q ss_pred CCCC-CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 5887-0268888998875962882875714998999860588999999998789
Q gi|254780439|r 89 TTGG-QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPL 141 (1162)
Q Consensus 89 ~~GG-qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gi 141 (1162)
+++. ++.+.++..+.+ +......|-++.|++ ..+.|.++|.
T Consensus 68 ~~~~d~~n~~~~~~~r~-----------~~~~~~iiar~~~~~-~~~~l~~~Ga 109 (115)
T pfam02254 68 ATGDDEANILIVLLARE-----------LNPAKKIIARANDPE-HAELLRRLGA 109 (115)
T ss_pred ECCCHHHHHHHHHHHHH-----------HCCCCEEEEEECCHH-HHHHHHHCCC
T ss_conf 62984999999999999-----------789980999987899-9999997698
No 171
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.1 Score=31.32 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9776655699997677542050546668889999999987978999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|--=++||+|-|||+|-+ |..-.-.+--.|++|++.+++|+
T Consensus 1 m~~m~~Ik~VaVIGaG~M-----------G~giAa~~a~~G~~V~l~D~~~~ 41 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVI-----------GSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCCCCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 965257887999888788-----------89999999947985999969888
No 172
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.06 E-value=0.13 Score=30.61 Aligned_cols=137 Identities=19% Similarity=0.307 Sum_probs=104.1
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 77418997276302014766531899999999965980699606865211232458637984167889999998748567
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
.++.|+|.|-| |.|| ...+.|++.|+..+.|-.||++|..--..--+.||=--|-.++++-...++.+-
T Consensus 399 ~~~~VII~G~G--R~Gq---------~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~ 467 (602)
T PRK03659 399 DKPQVIIVGFG--RFGQ---------VIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEA 467 (602)
T ss_pred CCCCEEEECCC--HHHH---------HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCE
T ss_conf 78998997887--5689---------999999978999899978679999999789908975899999998679040588
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHCCCC
Q ss_conf 82279984451-2466898888875983861275203310286789998887098668-542112156655565536971
Q gi|254780439|r 697 ELVGIIVQFGG-QTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP-RNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 697 ~~~~vi~q~gG-qt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p-~~~~a~s~eea~~~a~~iGyP 774 (1162)
+++.+.. ....++.+.+.++. +...-+-+|.||.-..++.+ +|.... +-.--++.+=+...-...|+|
T Consensus 468 ----vViai~d~~~~~~iv~~~r~~~-----P~l~I~aRar~~~~~~~L~~-~Ga~~vv~Et~essL~l~~~~L~~lG~~ 537 (602)
T PRK03659 468 ----IVITCNEPEDTMKLVELCQQHF-----PHLHILARARGRVEAHELLQ-AGVTQFSRETFSSALELGRKTLVSLGMH 537 (602)
T ss_pred ----EEEEECCHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHH-CCCCEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf ----9998298999999999999878-----69969998697899999997-8999786627899999999999980999
No 173
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.054 Score=33.59 Aligned_cols=227 Identities=18% Similarity=0.168 Sum_probs=109.8
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCC-----CCCCEEECCCCHHHHHHHHH
Q ss_conf 6556999976775420505466688899999999879789997487650107845-----13100433799999999998
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPD-----LADATYTEPITPEVVAKIIE 79 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~-----~aD~vY~ePlt~e~v~~Ii~ 79 (1162)
.+||||-|||+|-+ |.+....+--.|++|+|.+.||+.+..-.+ .+..+.-.-++.+....++.
T Consensus 2 ~~ik~VaViGAG~M-----------G~giA~~~a~~G~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~ 70 (292)
T PRK07530 2 MAIKKVGVIGAGQM-----------GNGIAHVCALAGYDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALA 70 (292)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99888999896699-----------9999999996799689997988999999999999999999706888899999984
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 628988997588702688889988759628828757149989998605889999999987898886200-0234433333
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSIL-ANATDIKEHD 158 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~-~~~~~~~~~~ 158 (1162)
+-.+. +-++ .+.+... ++=+ ..||-+.=+++..++.--+++..+ ++.|+....
T Consensus 71 ~i~~~---------~~~~---~~~~aDl-------ViEa------v~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~i- 124 (292)
T PRK07530 71 RITTA---------TTLD---DLADCDL-------VIEA------ATEDETVKRKIFAQLCPVLKPEAILASNTSSISI- 124 (292)
T ss_pred CCCCC---------CCHH---HHCCCCE-------EEEC------CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-
T ss_conf 07776---------8988---9664999-------9988------8474587898999998626988489875888750-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 233333334444444433332221111-------1123344444445544489999999998719969994132678664
Q gi|254780439|r 159 RKLHEEERENLKKTLSKEELDAALYAL-------ELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTG 231 (1162)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G 231 (1162)
+.+.+..+....-+ ......+|.+++.+-.-..++.+.++++++|..+++..- .-
T Consensus 125 -------------s~la~~~~~p~R~ig~HffnP~~~~~LVEIv~g~~Ts~~~~~~~~~~~~~lgk~pvv~~d-----~p 186 (292)
T PRK07530 125 -------------TRLASSTDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKAFVTKLGKTIAVAED-----FP 186 (292)
T ss_pred -------------HHHHHHCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECC-----CC
T ss_conf -------------566664378476436321687021622666389999899999999999974985089767-----67
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 5111699999999998998579982798664499789999999728998899963000000100001
Q gi|254780439|r 232 GGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTG 298 (1162)
Q Consensus 232 ~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtG 298 (1162)
+-|++.. +..++.+|+. ++++-+....+|+ .++|.+-|-- .|-.+-+|-+|..+.
T Consensus 187 GFi~NRl--~~~~~~Ea~~-------lv~eGva~~e~ID-~~~~~g~g~p--~GPf~l~D~vGlD~~ 241 (292)
T PRK07530 187 AFIVNRI--LLPMINEAIY-------TLYEGVGSVEAID-TAMKLGANHP--MGPLELADFIGLDTC 241 (292)
T ss_pred CHHHHHH--HHHHHHHHHH-------HHHCCCCCHHHHH-HHHHHCCCCC--CCHHHHHHHHCHHHH
T ss_conf 6099999--9999999999-------9981999999999-9986277985--668898886158899
No 174
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=96.03 E-value=0.027 Score=35.98 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCC-CEEECCCCCCCCEEECCCCHHHHHHHH--HHHCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 888999999998797899974876-501078451310043379999999999--86289889975887026888899887
Q gi|254780439|r 28 YSGTQACKALKEEGYRIILVNSNP-ATIMTDPDLADATYTEPITPEVVAKII--EKERPDAILPTTGGQTALNTALSLKR 104 (1162)
Q Consensus 28 ys~~qa~~alke~Gi~vVlVNsNp-aTi~TD~~~aD~vY~ePlt~e~v~~Ii--~~E~pDaIlp~~GGqtalnl~~~L~e 104 (1162)
-|+-|.|+..|++|++||+|-..- +..-+.+.++|++.+..=-.+.+...+ +.-+-++|+.--|.-++ -+.-
T Consensus 7 HSALqIl~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~~~q~~L~~~N~I~IPhgSfv~-----Y~G~ 81 (124)
T pfam06849 7 HSALQILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVVDKFKDILDEEVQQKLRENNAIFIPHGSFVA-----YVGY 81 (124)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEECCCCEEE-----EECH
T ss_conf 03989972388739957899817975213326867379995658998729999999988979974888467-----6558
Q ss_pred CCCHHHHCCEEECCCHHHHHHHC-CHHHHHHHHHHCCCCCCCC
Q ss_conf 59628828757149989998605-8899999999878988862
Q gi|254780439|r 105 MGVLDRYGVEMIGAKPETIDKAE-DRSLFSKAMQNIPLATPKS 146 (1162)
Q Consensus 105 ~gil~~~~v~~lG~~~~~I~~~e-dR~~F~~~l~~~gip~~~s 146 (1162)
+.+..++.|.+.|.. .|-+.| ||.+=+++|++.|+|+|+.
T Consensus 82 ~~ie~~~~VP~FGNR--~lLrwEseR~~~~~lLe~Agi~~Pk~ 122 (124)
T pfam06849 82 DRVENEFKVPIFGNR--NLLRWESERDKERKLLEKAGIRYPKK 122 (124)
T ss_pred HHHHHCCCCCEECCH--HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 998602788700478--88887653677999999769999835
No 175
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.029 Score=35.70 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 77418997276302014766531899999999965980-69960686521123245863798416788999999874856
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFE-TIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~-tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
..++|+|+|.||+ ...++..+|..|-. .|.+--||+-...--+.--..++.|-. +++.++. +..
T Consensus 169 ~g~~VlV~G~G~i-----------Gl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~-~~~~~~~---~~~ 233 (343)
T PRK09880 169 QGKRVFISGVGPI-----------GCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGADVLVNPQN-DDMDHWK---AEK 233 (343)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCC-CCHHHHH---HHC
T ss_conf 6988999847767-----------999999999869987999979789999999729979987987-4399999---636
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCH
Q ss_conf 78227998445124668988888759--8386127520
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDS 731 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~ 731 (1162)
|...-++-..|....++.+..+-+.| +-++|.....
T Consensus 234 g~~Dvvie~~G~~~~~~~al~~~r~gG~iv~vG~~~~~ 271 (343)
T PRK09880 234 GYFDVSFEVSGHPSSVNTCLEVTRAKGVMVQVGMGGAM 271 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99778999219999999999737798399999727988
No 176
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.90 E-value=0.051 Score=33.75 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=108.4
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE-----EECCCCHHHHHHHHHH
Q ss_conf 55699997677542050546668889999999987978999748765010784513100-----4337999999999986
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT-----YTEPITPEVVAKIIEK 80 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v-----Y~ePlt~e~v~~Ii~~ 80 (1162)
.||||-|||+|-. |.+....+-..|++|+|.+.||+.+..-.....+. --..++.+....++.+
T Consensus 2 ~i~~VaViGaG~m-----------G~~IA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 70 (282)
T PRK05808 2 SIQKIGVIGAGTM-----------GNGIAQVCAVAGYDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALAR 70 (282)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 7268999897889-----------99999999957993899979989999999999999999997088642669999952
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999987898886200023-44333332
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA-TDIKEHDR 159 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~-~~~~~~~~ 159 (1162)
=. ..+-++ .+.+... ++=+ -.||-+.=+++..++.--+++..+..+ |+......
T Consensus 71 i~---------~~~dl~---~~~~aDl-------ViEa------v~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is~ 125 (282)
T PRK05808 71 IT---------GTTDLD---DLKDADL-------VIEA------AVENMDIKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred CC---------CCCCHH---HHCCCCE-------EEEC------CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 63---------668888---9675999-------9987------756345569999999955799848997588776699
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCC
Q ss_conf 333333344444444333322211-------111123344444445544489999999998719-969994132678664
Q gi|254780439|r 160 KLHEEERENLKKTLSKEELDAALY-------ALELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTG 231 (1162)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG~G 231 (1162)
. .+....... --......+|.+++.+-.-..++.+.++++++| -||++|-. -
T Consensus 126 l--------------a~~~~~p~R~ig~HffnP~~~~~lVEiv~g~~Ts~~~~~~~~~~~~~lgk~pV~vkd~------p 185 (282)
T PRK05808 126 L--------------AAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVNNA------P 185 (282)
T ss_pred H--------------HHHCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCC------C
T ss_conf 9--------------9772992542055667872337116672799999999999999998749847998177------7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 51116999999999989985799827986644997899999997289988999630000001000010
Q gi|254780439|r 232 GGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGD 299 (1162)
Q Consensus 232 ~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGD 299 (1162)
+-|++.. +..++.+|+.. +++-+....+|+ .++|.+.|. -.+-.+-+|-+|..+.-
T Consensus 186 GFi~NRl--~~a~~~ea~~l-------v~eGva~~~dID-~~~~~g~g~--~~GPf~l~D~~GLD~~~ 241 (282)
T PRK05808 186 GFVVNRI--LIPMINEAIFV-------LAEGVATAEDID-EGMKLGCNH--PIGPLALADLIGLDTCL 241 (282)
T ss_pred CHHHHHH--HHHHHHHHHHH-------HHCCCCCHHHHH-HHHHHCCCC--CCCHHHHHHHHHHHHHH
T ss_conf 5089999--99999999999-------983999999999-987757898--56599988875288999
No 177
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.90 E-value=0.044 Score=34.31 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 777418997276302014766531899999999965980-6996068652112324586379841678899999987485
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFE-TIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~-tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p 694 (1162)
...++|+|+|.||+ ...++..+|..|-. .|++--|++-..---..-..-.+.|=+. .+.......
T Consensus 119 ~~g~~V~V~G~G~i-----------Gl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~---~~~~~~~~~ 184 (280)
T TIGR03366 119 LKGRRVLVVGAGML-----------GLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL---AERQGGLQN 184 (280)
T ss_pred CCCCEEEEEECCHH-----------HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCH---HHHHHHHHC
T ss_conf 99998999907868-----------9999999998499879999199899999997399898377577---999999727
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--
Q ss_conf 678227998445124668988888759--8386127520331028678999888709866854211215665556553--
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACE-- 770 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~-- 770 (1162)
.....-++-..|-...++.+..+-+.| +-++|.....-+..=|.. .-+.+++.|.=-.+.....+++++++..+
T Consensus 185 g~g~D~vie~~G~~~~~~~a~~~l~~gG~iv~vG~~~~~~~~~~~~~--~l~~ke~~i~Gs~~~~~~~~~~ai~ll~~~~ 262 (280)
T TIGR03366 185 GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPE--QVVRRWLTIRGVHNYEPRHLDQAVRFLAANG 262 (280)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHH--HHHHCCEEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 88870999878988999999998604989999804689984147899--9986987999960689899999999999769
Q ss_pred CCCCE--EEECCCCC
Q ss_conf 69716--75134444
Q gi|254780439|r 771 IGFPL--LIRPSYVL 783 (1162)
Q Consensus 771 iGyPV--LVRPSyVL 783 (1162)
..+|+ ||--.|.|
T Consensus 263 ~~~~~~~lIt~~~pL 277 (280)
T TIGR03366 263 QRFPFEELVGKPFPL 277 (280)
T ss_pred CCCCHHHHCCCEECC
T ss_conf 974869950643604
No 178
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.87 E-value=0.039 Score=34.68 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=95.2
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7389788998771889899999999999999875303760------2799998653379988999885899999998898
Q gi|254780439|r 499 RLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPK------DFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRH 572 (1162)
Q Consensus 499 r~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~------~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~ 572 (1162)
..|++.+++.+...+. +=-+-++|+..+-.-|...-+-+ -++.+..|++.|+++..+-++.+.....=++.|.
T Consensus 76 ~~~~~~~~l~~~~~~~-~g~~Av~HLfrVasGLDSmVvGE~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~Ai~~aK~VRt 154 (429)
T PRK00045 76 YHGLDLEELRPYLYVH-EGDEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRT 154 (429)
T ss_pred HHCCCHHHHHHHHEEE-CCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8397988973242255-577999999999733222105857899999999999988298138999999999999999987
Q ss_pred HCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 63984799862143244366585589720677666553223567774189972763020147665318999999999659
Q gi|254780439|r 573 QMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAG 652 (1162)
Q Consensus 573 ~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G 652 (1162)
+-+|-..=--|-+.|-+.... .-.....++|+|+|.|- ++-.+++.|++.|
T Consensus 155 eT~I~~~~vSi~s~Av~la~~------------------~~~~l~~~~vlviGaGe-----------m~~l~~k~L~~~g 205 (429)
T PRK00045 155 ETGIGAGAVSVASAAVELAKK------------------IFGDLSGKKVLVIGAGE-----------MGELVAKHLAEKG 205 (429)
T ss_pred HCCCCCCCCCHHHHHHHHHHH------------------HCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCC
T ss_conf 265888998889999999998------------------64781206599976748-----------9999999998559
Q ss_pred CCEEE-EECCCCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 80699-606865211232458637984167889999998
Q gi|254780439|r 653 FETIM-INCNPETVSTDYDIADRLYFESLTEEDILEILR 690 (1162)
Q Consensus 653 ~~tIm-IN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~ 690 (1162)
...|. +|-+++-. -..+.++=.+.+.+++..+.+.
T Consensus 206 ~~~i~v~nRt~~ra---~~la~~~~~~~~~~~~l~~~l~ 241 (429)
T PRK00045 206 VRKITVANRTLERA---EELAEEFGAEAIPLEELPEALA 241 (429)
T ss_pred CCEEEEECCCHHHH---HHHHHHCCCEEECHHHHHHHHH
T ss_conf 98499975867789---9999975988974999999996
No 179
>PRK09117 consensus
Probab=95.81 E-value=0.066 Score=32.91 Aligned_cols=227 Identities=17% Similarity=0.164 Sum_probs=110.2
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCC----CCCE-EECCCCHHHHHHHHHH
Q ss_conf 5569999767754205054666888999999998797899974876501078451----3100-4337999999999986
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL----ADAT-YTEPITPEVVAKIIEK 80 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~----aD~v-Y~ePlt~e~v~~Ii~~ 80 (1162)
.||||-|||+|.+ |.+....+--.|++|+|.+.+|+.+..-... .++. --+.++......++.+
T Consensus 1 sI~~VaViGaG~m-----------G~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 69 (282)
T PRK09117 1 SIQTVGIIGAGTM-----------GNGIAQACAVAGLDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALAR 69 (282)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9177999897799-----------99999999967996899989889999999999999999997068877889999840
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999987898886200023443333323
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRK 160 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~ 160 (1162)
+-+.+-+. .+.+... ++=+ -.||-+.=+++..++.--+++..+..+.+ +..
T Consensus 70 ---------i~~~~d~~---a~~~aDl-------ViEa------v~E~l~iK~~lf~~l~~~~~~~~IlaSNT-S~l--- 120 (282)
T PRK09117 70 ---------IKGSTDYD---ALKDADL-------VIEA------ATENLDLKLKILKQLDALVGPDAIIATNT-SSI--- 120 (282)
T ss_pred ---------CCCCCCHH---HHCCCCE-------EEEC------CCCCHHHHHHHHHHHHHHCCCCCEEEECC-CCC---
T ss_conf ---------65679989---9755999-------9987------85888888999999986579981898658-767---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCC
Q ss_conf 33333344444444333322211-111------123344444445544489999999998719-9699941326786645
Q gi|254780439|r 161 LHEEERENLKKTLSKEELDAALY-ALE------LKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTGG 232 (1162)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG~G~ 232 (1162)
..+-+.+....... .-- .....+|.+++..-.-..++.+.++++++| -||++|-. -+
T Consensus 121 ---------~i~~ia~~~~~p~R~ig~HffnP~~~~~LVEiv~g~~Ts~~~~~~~~~~~~~lgk~pV~vkd~------pG 185 (282)
T PRK09117 121 ---------SITKLAAATSRPDRFIGMHFFNPVPMMALVELIRGLQTSDATHAAVEALAKRLGKTPITVKNS------PG 185 (282)
T ss_pred ---------CCHHHHHHCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECC------CC
T ss_conf ---------617788764984641554556886658448864999998999999999999739879998167------88
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 1116999999999989985799827986644997899999997289988999630000001000010
Q gi|254780439|r 233 GIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGD 299 (1162)
Q Consensus 233 ~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGD 299 (1162)
-|++.. +..++.+++.. +++-+....+|+- ++|.+.|-- .+-.+-+|-+|..+.-
T Consensus 186 Fi~NRl--~~a~~~ea~~l-------v~eGva~~~~ID~-~~~~g~g~p--~GPf~l~D~~GlD~~~ 240 (282)
T PRK09117 186 FVVNRI--LCPMINEAIFV-------LGEGLATAEDIDE-GMKLGCNHP--IGPLALADMIGLDTML 240 (282)
T ss_pred CCHHHH--HHHHHHHHHHH-------HHCCCCCHHHHHH-HHHCCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 109999--99999999999-------9849999999998-735079996--6489998863388999
No 180
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.80 E-value=0.067 Score=32.85 Aligned_cols=39 Identities=21% Similarity=0.550 Sum_probs=33.7
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 55699997677542050546668889999999987978999748765010
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
+||||-|||+|-. |.+....+-..|++|+|++.|++...
T Consensus 2 ~Ik~VaViGaG~M-----------G~gIA~~~a~~G~~V~l~D~~~~~l~ 40 (291)
T PRK06035 2 DIKVIGVVGSGVM-----------GQGIAQVFARTGYDVTIVDVSEEILK 40 (291)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 9588999887688-----------99999999958998899989989999
No 181
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.71 E-value=0.028 Score=35.78 Aligned_cols=136 Identities=21% Similarity=0.383 Sum_probs=103.6
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 74189972763020147665318999999999659806996068652112324586379841678899999987485678
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGE 697 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~ 697 (1162)
...|+|.|-| |.||- ..+.|++.|+..+.|-.||++|..--..--+.||=--|-.++++-.-.|+.+-
T Consensus 399 ~~~VII~G~G--RvGq~---------var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~- 466 (615)
T PRK03562 399 QPRVIIAGFG--RFGQI---------VGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEV- 466 (615)
T ss_pred CCCEEEEECC--CCHHH---------HHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCE-
T ss_conf 9998999028--04699---------99999978998799979999999999679908976899999998679140688-
Q ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHCCCC
Q ss_conf 22799844512-466898888875983861275203310286789998887098668-542112156655565536971
Q gi|254780439|r 698 LVGIIVQFGGQ-TPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP-RNGISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 698 ~~~vi~q~gGq-t~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p-~~~~a~s~eea~~~a~~iGyP 774 (1162)
+++.+.-. ...++.+.+.++. +...-+-+|.||....++.+ +|.... +-.--++.+=+...-+..|+|
T Consensus 467 ---vViaidd~~~~~~iv~~~r~~~-----P~l~IiaRard~~~~~~L~~-~Ga~~vv~Et~essL~l~~~~L~~lG~~ 536 (615)
T PRK03562 467 ---LINAIDDPQTNLQLTELVKEHF-----PHLQIIARARDVDHYIRLRQ-AGVEKPERETFEGALKSGRLALESLGLG 536 (615)
T ss_pred ---EEEEECCHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHH-CCCCEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf ---9999498999999999999758-----99869998397788999997-8999896665899999999999980999
No 182
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.67 E-value=0.087 Score=31.95 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=36.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEE--CCCCHHHHCCCHH--------HHHHHHHHCCCCCCCCC--CCCCHHHHHHHH
Q ss_conf 99844512466898888875983861--2752033102867--------89998887098668542--112156655565
Q gi|254780439|r 701 IIVQFGGQTPLKLSKILEKNQIPILG--TQPDSIDLAEDRD--------RFQKLLMELDLNQPRNG--ISHSVEHARLIA 768 (1162)
Q Consensus 701 vi~q~gGqt~~~la~~L~~~gv~ilG--ts~~~Id~aEDR~--------~F~~ll~~l~i~~p~~~--~a~s~eea~~~a 768 (1162)
||+-=.|.....+++-|++.|++..- .+++.++.+.... .=.++|+..|+.+.+-- +..+.+.+.+.+
T Consensus 402 VII~G~GRvGq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~~~~~iv 481 (615)
T PRK03562 402 VIIAGFGRFGQIVGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLT 481 (615)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 89990280469999999978998799979999999999679908976899999998679140688999949899999999
Q ss_pred HHC-----CCCEEEEC
Q ss_conf 536-----97167513
Q gi|254780439|r 769 CEI-----GFPLLIRP 779 (1162)
Q Consensus 769 ~~i-----GyPVLVRP 779 (1162)
+.+ .-|+++|.
T Consensus 482 ~~~r~~~P~l~IiaRa 497 (615)
T PRK03562 482 ELVKEHFPHLQIIARA 497 (615)
T ss_pred HHHHHHCCCCEEEEEE
T ss_conf 9999758998699983
No 183
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.62 E-value=0.037 Score=34.93 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=39.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEE--ECCCCHHHHCCCHHH--------HHHHHHHCCCCCCCCC--CCCCHHHHHHHH
Q ss_conf 9984451246689888887598386--127520331028678--------9998887098668542--112156655565
Q gi|254780439|r 701 IIVQFGGQTPLKLSKILEKNQIPIL--GTQPDSIDLAEDRDR--------FQKLLMELDLNQPRNG--ISHSVEHARLIA 768 (1162)
Q Consensus 701 vi~q~gGqt~~~la~~L~~~gv~il--Gts~~~Id~aEDR~~--------F~~ll~~l~i~~p~~~--~a~s~eea~~~a 768 (1162)
||+-=.|-....+++-|++.|++.. -.+++.++.+..... =.++|+..|+.+.+.- +..+.+.+.+.+
T Consensus 403 VII~G~GR~Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~~~~~~iv 482 (602)
T PRK03659 403 VIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKLV 482 (602)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 89978875689999999978999899978679999999789908975899999998679040588999829899999999
Q ss_pred HHC-----CCCEEEEC
Q ss_conf 536-----97167513
Q gi|254780439|r 769 CEI-----GFPLLIRP 779 (1162)
Q Consensus 769 ~~i-----GyPVLVRP 779 (1162)
+.+ .-|+++|.
T Consensus 483 ~~~r~~~P~l~I~aRa 498 (602)
T PRK03659 483 ELCQQHFPHLHILARA 498 (602)
T ss_pred HHHHHHCCCCEEEEEE
T ss_conf 9999878699699986
No 184
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.063 Score=33.08 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=64.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEC--CCCCCCCEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 6999976775420505466688899999999879789997487650107--84513100433799999999998628988
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMT--DPDLADATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~T--D~~~aD~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
++++|+|.|.. |.+.|+.|.++|..+++|..|++.+-. ......+++..--|-+.+.+=+-.++.|+
T Consensus 1 m~iiIiG~G~v-----------G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRV-----------GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCE
T ss_conf 98999898578-----------8999999987899089997688999986320004499992688989998679863899
Q ss_pred EEECCCC-CHHHHHHH
Q ss_conf 9975887-02688889
Q gi|254780439|r 86 ILPTTGG-QTALNTAL 100 (1162)
Q Consensus 86 Ilp~~GG-qtalnl~~ 100 (1162)
++...|. .+.+-+++
T Consensus 70 vva~t~~d~~N~i~~~ 85 (225)
T COG0569 70 VVAATGNDEVNSVLAL 85 (225)
T ss_pred EEEEECCCHHHHHHHH
T ss_conf 9998088679999999
No 185
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.58 E-value=0.072 Score=32.59 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=50.2
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCC-CCEEEEEECC---HHHHHHHH
Q ss_conf 677741899727630201476653189999999996598-069960686521123245-8637984167---88999999
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGF-ETIMINCNPETVSTDYDI-ADRLYFESLT---EEDILEIL 689 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~-~tImIN~NPETVSTDyd~-sDrLYFEplt---~E~V~~I~ 689 (1162)
...+++|+|+|.||. | ..++..+|..|- +.|++-.|++-...--.. +|. .+.+-. .|.|.++.
T Consensus 174 ~~~g~~VlV~GaG~i--G---------l~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~-~i~~~~~~~~~~v~~~t 241 (358)
T TIGR03451 174 VKRGDSVAVIGCGGV--G---------DAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH-TVNSSGTDPVEAIRALT 241 (358)
T ss_pred CCCCCEEEEECCCHH--H---------HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHH
T ss_conf 999988999673769--9---------99999999839918999919889999999659909-97399878899999985
Q ss_pred HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECC
Q ss_conf 87485678227998445124668988888759--8386127
Q gi|254780439|r 690 RVEQQKGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQ 728 (1162)
Q Consensus 690 ~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts 728 (1162)
.-. +.+-|+-..|-+..++.+..+-+.| +-++|..
T Consensus 242 ~g~----G~Dvvie~~G~~~~~~~al~~~~~gG~iv~~G~~ 278 (358)
T TIGR03451 242 GGF----GADVVIDAVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCC----CCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 898----8749999999989999999976279699999225
No 186
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=95.55 E-value=0.18 Score=29.51 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=96.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999999659806996068652112324586379841678899999987485678227998445124668988888759
Q gi|254780439|r 642 CHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQ 721 (1162)
Q Consensus 642 v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~g 721 (1162)
...++++.+.|++.|=+ .==|||--.++.++++.=+....+..+-..+-|..=-+.+..|.++|
T Consensus 51 ~~l~~~~~~~Gi~kvRl----------------TGGEPLlR~dl~~li~~l~~~~gi~~islTTNG~lL~~~a~~Lk~aG 114 (329)
T PRK13361 51 AWLAQAFTELGVRKIRL----------------TGGEPLVRTGCDQLVARLGKLPGLEELSMTTNGSRLARFAAELADAG 114 (329)
T ss_pred HHHHHHHHHCCCEEEEE----------------ECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99999999729528996----------------27882235688999999861799771899664776899999999779
Q ss_pred CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-CE-----EEECCCCCCCCCCEEECCHH
Q ss_conf 8386127520331028678999888709866854211215665556553697-16-----75134444565412554899
Q gi|254780439|r 722 IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF-PL-----LIRPSYVLGGRAMQIVYSEN 795 (1162)
Q Consensus 722 v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGy-PV-----LVRPSyVLGG~~M~Iv~~~~ 795 (1162)
+.=+--|.|++| +++|.++- +++....+-++++.|.+.|| || ++|. .|++
T Consensus 115 L~rvNISLDsLd----~~~f~~IT--------r~~~l~~Vl~gI~aA~~~G~~~VKiN~V~lrg------------~Ndd 170 (329)
T PRK13361 115 LKRLNISLDTLN----PDLFAALT--------RNGRLERVIAGIDAAKAAGFERIKLNAVILRG------------QNDD 170 (329)
T ss_pred CCEEEEECCCCC----HHHHHHHH--------CCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC------------CCHH
T ss_conf 986997357799----99999772--------89976999999999997799738899998368------------7888
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999752
Q gi|254780439|r 796 MLQDYLLDTL 805 (1162)
Q Consensus 796 eL~~yl~~a~ 805 (1162)
|+.+.++-+.
T Consensus 171 Ei~~l~~~~~ 180 (329)
T PRK13361 171 EVLDLVEFCR 180 (329)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 187
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.54 E-value=0.068 Score=32.78 Aligned_cols=129 Identities=18% Similarity=0.268 Sum_probs=74.6
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 741899727630201476653189999999996598069960686521---12324586379841678899999987485
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETV---STDYDIADRLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETV---STDyd~sDrLYFEplt~E~V~~I~~~E~p 694 (1162)
-++|+|+|+|-. +.+.++.| +.|++..+|..|++.. |--++-+. +.----|-+++++=...++.
T Consensus 232 ~~~v~I~Ggg~i-----------g~~la~~L-~~~~~v~iIe~d~~~~~~la~~l~~~~-Vi~GD~td~~~L~e~gi~~a 298 (455)
T PRK09496 232 VKRIMIAGGGNI-----------GLYLAKLL-EKGYSVKLIERDPERAEELAEELPNTL-VLHGDGTDQELLEEEGIDEA 298 (455)
T ss_pred CCEEEEECCCHH-----------HHHHHHHH-HCCCEEEEECCCHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHCCCCC
T ss_conf 651899878699-----------99999987-408838997089899999997478539-99788768899976364556
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 678227998445124668988888759838612752033102867899988870986685421121566555655
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
+ +++..-|.--.|+...|.... +|.. ..|-+.. +..|..++.++|+..+-+-......+.+.++.
T Consensus 299 D-----~~ia~T~~De~Ni~~~llAk~---~g~~-~~ia~v~-~~~y~~l~~~lgid~~isp~~~~a~~I~~~i~ 363 (455)
T PRK09496 299 D-----AFIALTNDDEANILSSLLAKR---LGAK-KVIALIN-RSAYVDLVQGLGIDIAISPRQATISAILRHVR 363 (455)
T ss_pred C-----EEEEECCCHHHHHHHHHHHHH---CCCC-CEEEEEC-CHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf 4-----899903881889999999987---3997-3688844-66788765324886578889999999999840
No 188
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.43 E-value=0.01 Score=39.39 Aligned_cols=224 Identities=14% Similarity=0.169 Sum_probs=109.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCC-----EEECCCCHHHHHHHHHHH
Q ss_conf 569999767754205054666888999999998797899974876501078451310-----043379999999999862
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADA-----TYTEPITPEVVAKIIEKE 81 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~-----vY~ePlt~e~v~~Ii~~E 81 (1162)
||||.|||+|.. |.+....+--.|++|+|++.||+.+..-.....+ +-...++.+....++.+=
T Consensus 2 IkkV~ViGaG~M-----------G~~IA~~~a~~G~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 70 (289)
T PRK09260 2 MEKIVVVGAGVM-----------GRGIAYVFASSGFQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARL 70 (289)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 676999796887-----------899999999689988999799899999999999999999871799989999999558
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 8988997588702688889988759628828757149989998605889999999987898886200023-443333323
Q gi|254780439|r 82 RPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA-TDIKEHDRK 160 (1162)
Q Consensus 82 ~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~-~~~~~~~~~ 160 (1162)
++. + ++...+.+... ++=+ ..||-+.=+++..++.--+++..+..+ |+....
T Consensus 71 ~~~---------~--dl~~a~~~aDl-------ViEa------v~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~i--- 123 (289)
T PRK09260 71 SYS---------L--DLKEAVAGADL-------LIEA------VPEKLEIKQAVFETADAHAPAEALIATNTSTLSP--- 123 (289)
T ss_pred CCC---------C--CHHHHHCCCCE-------EEEC------CCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCC---
T ss_conf 766---------8--88998476999-------9988------8686323689999986068998089855888771---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCC
Q ss_conf 3333334444444433332221111-------1123344444445544489999999998719-9699941326786645
Q gi|254780439|r 161 LHEEERENLKKTLSKEELDAALYAL-------ELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTGG 232 (1162)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG~G~ 232 (1162)
+.+.+.......-+ ......+|.+++..-.-..++.+.++++++| -||+++-. .+
T Consensus 124 -----------s~ia~~~~~p~R~ig~HffnP~~~~~lVEvv~g~~Ts~e~i~~~~~~~~~lgk~pv~v~d~------pG 186 (289)
T PRK09260 124 -----------TEIASATKRPERVIGMHFFNPVHKMKLVELVRGLETSDETVAVCREVAEQLGKETVVVNEF------PG 186 (289)
T ss_pred -----------HHHHHHCCCHHHEEEECCCCCHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC------CC
T ss_conf -----------1455415984662641247743221235645899999999999999999749842785688------75
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 11169999999999899857998279866449978999999972899889996300000010000
Q gi|254780439|r 233 GIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHT 297 (1162)
Q Consensus 233 ~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHt 297 (1162)
-|++..- ..++.+++.. +++-+....+|+ .++|..-|-- .+-.+-+|-+|..+
T Consensus 187 Fi~NRl~--~~~~~ea~~l-------v~eGva~~~dID-~~~~~~~g~p--~GPf~l~D~~GLD~ 239 (289)
T PRK09260 187 FVTSRIS--ALVGNEAMYM-------LQEGVATAEDID-KALRLGLNHP--MGPLELGDLVGLDT 239 (289)
T ss_pred HHHHHHH--HHHHHHHHHH-------HHCCCCCHHHHH-HHHHHCCCCC--CCHHHHHHHHHHHH
T ss_conf 2999989--9999999999-------981999999999-9978655981--37889998853889
No 189
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=95.24 E-value=0.057 Score=33.38 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=55.6
Q ss_pred CCCCEEEEECC-CCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 77741899727-63020147665318999999999659806996068652112324586379841678899999987485
Q gi|254780439|r 616 SDRKKIVILGG-GPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 616 ~~~kkviVlGs-Gp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p 694 (1162)
..+++|+|.|. |+. ...+++.+|..|.+.|.+-++++-...--..+|......-..+.+.++
T Consensus 161 ~~g~~VlI~Ga~G~v-----------G~~aiqlak~~Ga~vi~v~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~------ 223 (332)
T PRK13771 161 SEGETVLVTGAGGGV-----------GIHAVQVAKAYGAKVIAVTTSESKAKAVGKYADYVIVGSKFSEEVKKL------ 223 (332)
T ss_pred CCCCEEEEECCCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCHHHHHHHC------
T ss_conf 999999997787758-----------999999999869989999499999999985699898363057888734------
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEC
Q ss_conf 678227998445124668988888759-838612
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQ-IPILGT 727 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~g-v~ilGt 727 (1162)
+...-++-..|+.+-......|...| +-++|.
T Consensus 224 -~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~ 256 (332)
T PRK13771 224 -GGADIVIETVGGPTLEESLRSLNWGGKIVLIGN 256 (332)
T ss_pred -CCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -686389845766889988886258969999934
No 190
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=95.20 E-value=0.11 Score=31.27 Aligned_cols=109 Identities=20% Similarity=0.345 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCCEEEEEE----CCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 18999999999659806996-068652112324586379841----6788999999874856782279984451246689
Q gi|254780439|r 639 YCCCHASFSLKEAGFETIMI-NCNPETVSTDYDIADRLYFES----LTEEDILEILRVEQQKGELVGIIVQFGGQTPLKL 713 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~~tImI-N~NPETVSTDyd~sDrLYFEp----lt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~l 713 (1162)
-|+-|-++..|++|++|+.| .-..|..=+.|...|.+..-. +.-+.+-+-+...| .+++--|-.++--=
T Consensus 7 HSALqIl~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~~~q~~L~~~N------~I~IPhgSfv~Y~G 80 (124)
T pfam06849 7 HSALQILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVVDKFKDILDEEVQQKLRENN------AIFIPHGSFVAYVG 80 (124)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCC------EEEECCCCEEEEEC
T ss_conf 039899723887399578998179752133268673799956589987299999999889------79974888467655
Q ss_pred HHHHH-HCCCEEEECCCCHHHHCC-CHHHHHHHHHHCCCCCCCC
Q ss_conf 88888-759838612752033102-8678999888709866854
Q gi|254780439|r 714 SKILE-KNQIPILGTQPDSIDLAE-DRDRFQKLLMELDLNQPRN 755 (1162)
Q Consensus 714 a~~L~-~~gv~ilGts~~~Id~aE-DR~~F~~ll~~l~i~~p~~ 755 (1162)
....+ +..+|++|.- .+-..| ||.+=.++|++.||+.|+-
T Consensus 81 ~~~ie~~~~VP~FGNR--~lLrwEseR~~~~~lLe~Agi~~Pk~ 122 (124)
T pfam06849 81 YDRVENEFKVPIFGNR--NLLRWESERDKERKLLEKAGIRYPKK 122 (124)
T ss_pred HHHHHHCCCCCEECCH--HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8998602788700478--88887653677999999769999835
No 191
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.16 Score=29.77 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE-----EECCCCHHHHHHHHHH
Q ss_conf 55699997677542050546668889999999987978999748765010784513100-----4337999999999986
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT-----YTEPITPEVVAKIIEK 80 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v-----Y~ePlt~e~v~~Ii~~ 80 (1162)
.||||-|||+|-. |......+-..|++|+|++.||+.+..-.+...+. =-.-++.+....++.+
T Consensus 2 ~i~~VaViGaGtM-----------G~gIA~~~a~aG~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~r 70 (503)
T PRK08268 2 SIATVAVIGAGAM-----------GAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALAR 70 (503)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 9678999796889-----------99999999938990899979989999999999999999997699998899999847
Q ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 28988997588702688889988759628828757149989998605889999999987898886200023-44333332
Q gi|254780439|r 81 ERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA-TDIKEHDR 159 (1162)
Q Consensus 81 E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~-~~~~~~~~ 159 (1162)
|.++ +.+. .|..... ++=+ -.||-+.=+++..++.--+++..+..+ |+...-..
T Consensus 71 -----i~~~----~~l~---~l~~aDl-------VIEA------V~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~it~ 125 (503)
T PRK08268 71 -----LRPV----EALA---DLADCDL-------VVEA------IVERLDVKQALFAQLEAIVSDDCILATNTSSLSITA 125 (503)
T ss_pred -----CEEE----CCHH---HHCCCCE-------EEEC------CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf -----4741----7788---9757999-------9993------606789999999999854798857984177677999
Q ss_pred ---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf ---------333333344444444333322211111123344444445544489999999998719-9699941326786
Q gi|254780439|r 160 ---------KLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGG 229 (1162)
Q Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivRps~~lGG 229 (1162)
.+...-|++|.+. -..+|.+++.+-.-..++.+.++++.+| -||++|-.
T Consensus 126 iA~~~~~PeR~iG~HFfnP~~~----------------m~LVEVV~g~~Ts~e~v~~~~~~~~~lGK~pV~v~d~----- 184 (503)
T PRK08268 126 IAAALKHPERVAGLHFFNPVPL----------------MKLVEVVSGLATDPAVADALYALARRWGHTPVRAKDT----- 184 (503)
T ss_pred HHHHCCCCCEEEEEEECCCCCC----------------CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCC-----
T ss_conf 9974698440788771587244----------------6048880799999999999999999829804895578-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 64511169999999999899857998279866449978999999972899889996300000010000101
Q gi|254780439|r 230 TGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 (1162)
Q Consensus 230 ~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDS 300 (1162)
-+-|++.. +.-+..+|+.. +|+-+....+|+ .+||++-|-- .|-.|-.|-+|+..+-.
T Consensus 185 -pGFi~NRi--~~~~~~EA~~l-------~eeGvA~~e~ID-~a~r~~~G~p--mGPfel~DliGlDv~~~ 242 (503)
T PRK08268 185 -PGFIVNHA--GRPYYTEALRV-------LGEGVADFATID-AILREAAGFR--MGPFELMDLTGLDVSHP 242 (503)
T ss_pred -CCCCHHHH--HHHHHHHHHHH-------HHCCCCCHHHHH-HHHHHCCCCC--CCHHHHHHHHHHHHHHH
T ss_conf -98208877--54899999999-------982899999999-9999678997--58888876642168899
No 192
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=95.16 E-value=0.062 Score=33.09 Aligned_cols=65 Identities=26% Similarity=0.486 Sum_probs=43.4
Q ss_pred EEEEEC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCC-----------EEECCC-CHHHHH
Q ss_conf 999976-7754205054666888999999998797899974876501078451310-----------043379-999999
Q gi|254780439|r 9 TLLIIG-AGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADA-----------TYTEPI-TPEVVA 75 (1162)
Q Consensus 9 kvLviG-sGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~-----------vY~ePl-t~e~v~ 75 (1162)
||||-| +|=| |+|.||+|.|.|+++| |..| .|+-..-+-+ .|..=| ..+.|.
T Consensus 1 ~iLVTGGAGYI-----------GSHt~~~Ll~~G~ev~-vlDN---Ls~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~ 65 (341)
T TIGR01179 1 KILVTGGAGYI-----------GSHTVRQLLESGYEVV-VLDN---LSNGSAEALKRGEEITGKEVTFVEGDLRDRELLR 65 (341)
T ss_pred CEEEEECCCCC-----------HHHHHHHHHHCCCEEE-EEEC---CCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHH
T ss_conf 92686146644-----------3588788763597289-9815---7888488750023414853205871751579999
Q ss_pred HHHH----HHCCCEEEE
Q ss_conf 9998----628988997
Q gi|254780439|r 76 KIIE----KERPDAILP 88 (1162)
Q Consensus 76 ~Ii~----~E~pDaIlp 88 (1162)
++.+ .++||||+=
T Consensus 66 ~~f~kqql~~~idAViH 82 (341)
T TIGR01179 66 RVFEKQQLEHKIDAVIH 82 (341)
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99877431167546752
No 193
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=95.10 E-value=0.18 Score=29.46 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=54.8
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHH-HCC
Q ss_conf 7418997276302014766531899999999965980-69960686521123245-86379841678899999987-485
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFE-TIMINCNPETVSTDYDI-ADRLYFESLTEEDILEILRV-EQQ 694 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~-tImIN~NPETVSTDyd~-sDrLYFEplt~E~V~~I~~~-E~p 694 (1162)
.++|+|+|.|| ||+ .++..+|..|.. .|.+-.|++....--+. +|.. +.+ +-|++.+.+.. -..
T Consensus 164 g~~VlV~GaG~--vGl---------~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~-i~~-~~~~~~~~~~~~t~~ 230 (341)
T PRK05396 164 GEDVLITGAGP--IGI---------MAAAVAKHVGARHVVITDVNEYRLELARKMGATRA-VNV-AKEDLRDVMAELGMT 230 (341)
T ss_pred CCEEEEECCCC--CCH---------HHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEE-EEC-CCHHHHHHHHHHHCC
T ss_conf 88699989975--432---------99999998499289999489999998986499499-968-850689999997489
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCH
Q ss_conf 678227998445124668988888759--8386127520
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDS 731 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~ 731 (1162)
.| +.-|+-..|.+..++.+..+-+.| +-++|.....
T Consensus 231 ~G-~Dvvid~~G~~~~~~~~~~~l~~gG~vv~~G~~~~~ 268 (341)
T PRK05396 231 EG-FDVGLEMSGAPSAFRQMLDAMNHGGRIAMLGIPPGD 268 (341)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99-769998789899999999986359899999557998
No 194
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.06 E-value=0.2 Score=29.14 Aligned_cols=68 Identities=16% Similarity=0.375 Sum_probs=49.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCC-----CCEEECC-CCHHHHHHHHHHH
Q ss_conf 699997677542050546668889999999987978999748765010784513-----1004337-9999999999862
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA-----DATYTEP-ITPEVVAKIIEKE 81 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~a-----D~vY~eP-lt~e~v~~Ii~~E 81 (1162)
.+|||-|.-. |-|++.|+.|.|.|+++|.+++. +|....+ -+.|..- ...+.+.++++.+
T Consensus 1 ~~iLVtGGAG----------YIGSHtv~~Ll~~G~~vvV~DNL----~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 1 MKVLVTGGAG----------YIGSHTVRQLLKTGHEVVVLDNL----SNGHKIALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred CEEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECC----CCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHC
T ss_conf 9299965865----------46899999999789848999568----878888860204856883343199999999864
Q ss_pred CCCEEEEC
Q ss_conf 89889975
Q gi|254780439|r 82 RPDAILPT 89 (1162)
Q Consensus 82 ~pDaIlp~ 89 (1162)
+||||+-=
T Consensus 67 ~idaViHF 74 (329)
T COG1087 67 KIDAVVHF 74 (329)
T ss_pred CCCEEEEC
T ss_conf 99889987
No 195
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.97 E-value=0.051 Score=33.78 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 5699997677542050546668889999999987978999748765010
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
|+||-|||+|-+ |..-...+-..|++|++.++||+...
T Consensus 2 i~~VaViGaG~m-----------G~giA~~~a~~G~~V~l~D~~~~~l~ 39 (308)
T PRK06129 2 MGSIAIVGAGLI-----------GRAWAIVFARAGHRVRLWDADPAALA 39 (308)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 987999777899-----------99999999858993899989889999
No 196
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.84 E-value=0.28 Score=27.90 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 77741899727630201476653189999999996598069960686521123
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTD 668 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTD 668 (1162)
.+-++|-|+|+|.. |.||- ..+-..|+.++++--|+|.+..-
T Consensus 311 ~~i~~v~ViGaG~M--G~GIA---------~~~a~aG~~V~l~D~~~e~l~~g 352 (715)
T PRK11730 311 KDVKQAAVLGAGIM--GGGIA---------YQSASKGVPVIMKDINQKALDLG 352 (715)
T ss_pred CCCCEEEEECCCCC--HHHHH---------HHHHHCCCEEEEEECCHHHHHHH
T ss_conf 77627999787710--79999---------99995799579997899999999
No 197
>PRK05246 glutathione synthetase; Provisional
Probab=94.73 E-value=0.34 Score=27.22 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEC--C--CCHHH--HHHHHHHHCCCEEEECCCC---CHHHHHH
Q ss_conf 889999999987978999748765010784513100433--7--99999--9999986289889975887---0268888
Q gi|254780439|r 29 SGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE--P--ITPEV--VAKIIEKERPDAILPTTGG---QTALNTA 99 (1162)
Q Consensus 29 s~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~e--P--lt~e~--v~~Ii~~E~pDaIlp~~GG---qtalnl~ 99 (1162)
++..-+++..+.|+++-..+++=-++.-..-.|....+. + -.+.. -.+.+....-|.|+.--.= +.=|+.+
T Consensus 20 TT~~Lm~eAq~rGhev~~~~p~dL~~~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~L~~fD~V~mRkDPPfD~~Yi~~T 99 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVRARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYAT 99 (316)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEEECCCCCCCEEECCCEECCHHHCCEEEECCCCCCCHHHHHHH
T ss_conf 29999999998799899997275699899999999999981588874794151551300198999926999976888999
Q ss_pred HHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99887596288287571499899986058899999999878988862000234433333233333334444444433332
Q gi|254780439|r 100 LSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELD 179 (1162)
Q Consensus 100 ~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1162)
.-|.. +++.|+.++ -+|.+|+.+.++-...++- ++ +|++.+.
T Consensus 100 ~lLe~---~~~~gv~Vi-N~P~~IR~~nEKL~~l~F~-~~---iP~TlVt------------------------------ 141 (316)
T PRK05246 100 YLLER---AERAGTLVV-NKPQSLRDANEKLFTLWFP-EL---MPPTLVT------------------------------ 141 (316)
T ss_pred HHHHH---HCCCCEEEE-CCHHHHHHHHHHHHHHHHH-HH---CCCEEEE------------------------------
T ss_conf 99985---153870897-6989986426478887406-44---8993573------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 221111112334444444554448999999999871996999413267866451-1169999999999899857998279
Q gi|254780439|r 180 AALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGG-IAYNRSEFLEIVENGLHASPTTEVL 258 (1162)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~-iv~n~eeL~~~~~~al~~s~~~~vl 258 (1162)
.+.++..+|.++.| .+++||-++.||.|-- +..+...+..+++.... .+..+++
T Consensus 142 -----------------------~~~~~i~~F~~~~~-~iVlKPL~g~gG~gV~~i~~~d~n~~~i~e~~t~-~~~~~v~ 196 (316)
T PRK05246 142 -----------------------RDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGVILETLTE-QGRRPVM 196 (316)
T ss_pred -----------------------CCHHHHHHHHHHHC-CEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHH-CCCEEEE
T ss_conf -----------------------78999999999738-7899975688984089977786238999999974-5873689
Q ss_pred EEEECCCCEEEEEEEEEECCCCEEEEEECCCCCC-----CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8664499789999999728998899963000000-----10000101343373228988999999999999987183457
Q gi|254780439|r 259 IEESVLGWKEYELEMMRDIKGNCIVVCSIENLDP-----MGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESG 333 (1162)
Q Consensus 259 Ieksl~g~kEiE~eVirD~~gn~i~v~~~En~dp-----~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG 333 (1162)
+.|||...++=+.-|+= -+|..+-. .+--+-+ .-.|.|-.. =..+|++++.+.- .+|+..|.- .|
T Consensus 197 vQ~yl~ei~~GDkRiil-v~G~~ig~-a~~R~p~~gdfR~Nl~~Gg~~---~~~~lt~~~~~i~----~~i~p~L~~-~g 266 (316)
T PRK05246 197 AQRYLPEIKEGDKRILL-VDGEPVGY-ALARIPAGGETRGNLAAGGRG---EATPLTERDREIC----AAIGPELKE-RG 266 (316)
T ss_pred EEEEHHHCCCCCEEEEE-ECCEEEHH-EEEECCCCCCCEEEEECCCEE---EEECCCHHHHHHH----HHHHHHHHH-CC
T ss_conf 88651243689879999-99999114-688326788611323059802---6716998999999----999999998-79
Q ss_pred CCEEEEE-EECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 6468999-95589849998504443103578887634614767
Q gi|254780439|r 334 GANVQFA-VNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKI 375 (1162)
Q Consensus 334 ~~nVQFA-v~p~~~~~yvIEvNpR~sRssalaskatgypia~v 375 (1162)
+.|| +|=- |. |++|+|------..=..+.+|..+|..
T Consensus 267 ---l~f~GiDvi-g~-~ltEINVTSPtgl~ei~~~~~~~~~~~ 304 (316)
T PRK05246 267 ---LIFVGIDVI-GD-YLTEINVTSPTGIREIERLTGVDIAGM 304 (316)
T ss_pred ---CEEEEEEEE-CC-EEEEEECCCCHHHHHHHHHHCCCHHHH
T ss_conf ---889999753-78-268993689545999998759998999
No 198
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.36 Score=27.03 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCC
Q ss_conf 65569999767754205054666888999999998797899974876501078451310043379999999999862898
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPD 84 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pD 84 (1162)
..=|||||+|.|-- |..+.+.|++.|+++...+.+|.+........-.+....-..+. ....|
T Consensus 10 ~~Gk~V~V~GlG~s-----------G~a~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~d 72 (487)
T PRK03369 10 TPGAPVLVAGAGVT-----------GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSSSDAVQQ------IADYA 72 (487)
T ss_pred CCCCEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEECCCCCHHH------HCCCC
T ss_conf 79898999915683-----------89999999978697999989825779998659948637622656------46778
Q ss_pred EEEECCCC
Q ss_conf 89975887
Q gi|254780439|r 85 AILPTTGG 92 (1162)
Q Consensus 85 aIlp~~GG 92 (1162)
.|+.+=|=
T Consensus 73 ~vV~SPGI 80 (487)
T PRK03369 73 LVVTSPGF 80 (487)
T ss_pred EEEECCCC
T ss_conf 89989957
No 199
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.37 E-value=0.023 Score=36.53 Aligned_cols=230 Identities=15% Similarity=0.149 Sum_probs=113.1
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE-----EECCCCHHH-HHHHHH
Q ss_conf 55699997677542050546668889999999987978999748765010784513100-----433799999-999998
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT-----YTEPITPEV-VAKIIE 79 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v-----Y~ePlt~e~-v~~Ii~ 79 (1162)
+||||-|||+|-+ |.+....+-..|++|+|++.||+....-.+...+. --..++.+. ...+.
T Consensus 2 ~i~~VaViGaG~M-----------G~gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~- 69 (288)
T PRK08293 2 TIKKVTVAGAGVL-----------GSQIAFQTAFKGFDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAK- 69 (288)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-
T ss_conf 9578999897889-----------9999999995799289998988999999999999999999705999178999998-
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 628988997588702688889988759628828757149989998605889999999987898886200023-4433333
Q gi|254780439|r 80 KERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA-TDIKEHD 158 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~-~~~~~~~ 158 (1162)
..+-..+ ++...+..... ++ |+ ..||-+.=+++..++..-+++..+..+ |+....
T Consensus 70 --------~~i~~~~--dl~~a~~~aDl-------Vi----Ea--v~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~i- 125 (288)
T PRK08293 70 --------NRITFTT--DLAQAVKDADL-------VI----EA--VPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLP- 125 (288)
T ss_pred --------CCCCCCC--CHHHHHCCCCE-------EE----EC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-
T ss_conf --------0773058--98998466999-------99----97--8087999999999999746776699866876765-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCC
Q ss_conf 2333333344444444333322211-111------1233444444455444899999999987199-6999413267866
Q gi|254780439|r 159 RKLHEEERENLKKTLSKEELDAALY-ALE------LKWNLEENDRKHRYICHAMAVAVQALDEIGL-PLIIRPSFTLGGT 230 (1162)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGy-PvivRps~~lGG~ 230 (1162)
+.+.+....... .-. .....+|.+++..-.-..++.+.++++++|- ||+++.--
T Consensus 126 -------------t~la~~~~~p~R~ig~HffnP~~~m~LVEiv~g~~Ts~e~~~~~~~~~~~lgk~pvvv~~d~----- 187 (288)
T PRK08293 126 -------------SQFADATGRPEKFLALHFANHIWKNNTAEIMGHPGTDPEVYETVVAFAKAIGMVPIVLKKEQ----- 187 (288)
T ss_pred -------------HHHHHHCCCCHHEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC-----
T ss_conf -------------79988619922334303358834275264438999999999999999998399899985776-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEE
Q ss_conf 45111699999999998998579982798664499789999999728998899963000000100001013
Q gi|254780439|r 231 GGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301 (1162)
Q Consensus 231 G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi 301 (1162)
-+-|++.. +..+..+|+.. +++-+....+|+ .+++...|- -.|-.+-.|-+|+.+.-.+
T Consensus 188 pGFi~NRl--~~~~~~Ea~~l-------v~eGva~~e~ID-~a~~~~~g~--pmGPf~l~D~~GlD~~~~v 246 (288)
T PRK08293 188 PGYILNSL--LVPFLDAALAL-------WAKGVADPETID-KTWMIATGA--PMGPFGILDIIGLDTAYNI 246 (288)
T ss_pred CCEEHHHH--HHHHHHHHHHH-------HHHCCCCHHHHH-HHCHHHCCC--CCCHHHHHHHHHHHHHHHH
T ss_conf 98409999--99999999999-------991899999999-867040598--0378987777449999999
No 200
>PRK09422 alcohol dehydrogenase; Provisional
Probab=94.32 E-value=0.21 Score=28.88 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=74.5
Q ss_pred CCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHH
Q ss_conf 5677741899727630201476653189999999996-598069960686521123245-86379841678899999987
Q gi|254780439|r 614 KVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKE-AGFETIMINCNPETVSTDYDI-ADRLYFESLTEEDILEILRV 691 (1162)
Q Consensus 614 ~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~-~G~~tImIN~NPETVSTDyd~-sDrLYFEplt~E~V~~I~~~ 691 (1162)
...++++|+|.|+|+ +|+ .++..+|. .|.+.|.+-.||+-...--+. +|. .+.+...+++..+++.
T Consensus 159 ~~~~G~~VlV~GaGg--vG~---------~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~lGad~-vi~~~~~~~~~~~~~~ 226 (338)
T PRK09422 159 GIKPGQWIAIYGAGG--LGN---------LALQYAKNVFNAKVIAVDINDDKLALAKEVGADL-TINSKRVEDVAKIIQE 226 (338)
T ss_pred CCCCCCEEEEECCCH--HHH---------HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCE-EECCCCCCCHHHHHHH
T ss_conf 899998899968868--999---------9999999808986999989999999999729989-9818874349999999
Q ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 485678227998445124668988888759--838612752033102867899988870986685421121566555655
Q gi|254780439|r 692 EQQKGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 692 E~p~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
... ....++...++...++.+..+-+.| +-.+|.+...++. | .+.-+++++.+.-.....-..+++++++..
T Consensus 227 ~~g--g~~~~v~~~~~~~~~~~~~~~l~~gG~~v~vG~~~~~~~~--~--~~~~~~~~~~i~Gs~~~~~~d~~~~~~l~~ 300 (338)
T PRK09422 227 KTG--GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDL--S--IPRLVLDGIEVVGSLVGTRQDLEEAFQFGA 300 (338)
T ss_pred HCC--CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC--C--HHHHHHCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 509--9776999678789999999981169999998778987676--7--899986883999984289999999999998
Q ss_pred H
Q ss_conf 3
Q gi|254780439|r 770 E 770 (1162)
Q Consensus 770 ~ 770 (1162)
+
T Consensus 301 ~ 301 (338)
T PRK09422 301 E 301 (338)
T ss_pred C
T ss_conf 6
No 201
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.26 E-value=0.24 Score=28.50 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=41.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEECCCC--HHHHCCCHHH--------HHHHHHHCCCCCCCCCCCCC--HHH---HH
Q ss_conf 998445124668988888759838612752--0331028678--------99988870986685421121--566---55
Q gi|254780439|r 701 IIVQFGGQTPLKLSKILEKNQIPILGTQPD--SIDLAEDRDR--------FQKLLMELDLNQPRNGISHS--VEH---AR 765 (1162)
Q Consensus 701 vi~q~gGqt~~~la~~L~~~gv~ilGts~~--~Id~aEDR~~--------F~~ll~~l~i~~p~~~~a~s--~ee---a~ 765 (1162)
|++-=.|...-++++.|+++|++.+.-+.+ .++.+.++.. -.++++..|+.+.+.-.++- .++ +.
T Consensus 420 vii~G~Gr~G~~va~~L~~~~~~~vvid~d~~~v~~~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit~~d~~~~~~iv 499 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLASGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIV 499 (558)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 89989886699999999987998899989899999999689979997899889998579132499999819889999999
Q ss_pred HHHHHC--CCCEEEECC
Q ss_conf 565536--971675134
Q gi|254780439|r 766 LIACEI--GFPLLIRPS 780 (1162)
Q Consensus 766 ~~a~~i--GyPVLVRPS 780 (1162)
..+++. .-|+++|..
T Consensus 500 ~~~r~~~p~~~IiaRa~ 516 (558)
T PRK10669 500 ASAREKNPDIEIIARAH 516 (558)
T ss_pred HHHHHHCCCCEEEEEEC
T ss_conf 99998786986999979
No 202
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.26 E-value=0.28 Score=27.86 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=78.6
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCC--CCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 189972763020147665318999999999659806996-068652112324--58637984167889999998748567
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI-NCNPETVSTDYD--IADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI-N~NPETVSTDyd--~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
+|+|+|.||+ .--++..+|-.|-..|++ .-+|+....--. -+|.+.+..-. ..+..+.+..+..
T Consensus 171 ~V~V~GaGpI-----------GLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~- 237 (350)
T COG1063 171 TVVVVGAGPI-----------GLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGR- 237 (350)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCH-HHHHHHHHHCCCC-
T ss_conf 8999888899-----------99999999876982799979998999999987797187246301-4788999860898-
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHCCC
Q ss_conf 8227998445124668988888759--8386127520331028678999888709866854-211215665556553697
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN-GISHSVEHARLIACEIGF 773 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~-~~a~s~eea~~~a~~iGy 773 (1162)
..+-++-..|-+.+++-+..+-+.| +-++|+.....+ ......-+.+++.+.-... .....++.+++....=-+
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~---~~~~~~~~~kel~l~g~~~~~~~~~~~~~~~ll~~g~i 314 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDI---PLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKI 314 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC---CCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 799999998997999999996025989999951588666---56888997535089734566564019999999985998
No 203
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=94.20 E-value=0.26 Score=28.15 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=96.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999999659806996068652112324586379841678899999987485678227998445124668988888759
Q gi|254780439|r 642 CHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQ 721 (1162)
Q Consensus 642 v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~g 721 (1162)
...++.+.+.|++.|=+ .==|||--.++.++++.=+....+..|-..+-|..=-+.|..|.++|
T Consensus 57 ~~i~~~~~~lGi~kiRl----------------TGGEPLlR~di~~li~~l~~~~gi~~v~lTTNG~lL~~~a~~Lk~aG 120 (334)
T PRK00164 57 ERLVRAFAALGVRKIRL----------------TGGEPLLRKDLEDIIARLAALPGIRDLALTTNGYLLARRAAALKDAG 120 (334)
T ss_pred HHHHHHHHHCCCCEEEE----------------CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf 99999999709627986----------------07884323578999999863279751788444889999999999859
Q ss_pred CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCCEEECCHHHHHHH
Q ss_conf 8386127520331028678999888709866854211215665556553697-167513444456541255489999999
Q gi|254780439|r 722 IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF-PLLIRPSYVLGGRAMQIVYSENMLQDY 800 (1162)
Q Consensus 722 v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGy-PVLVRPSyVLGG~~M~Iv~~~~eL~~y 800 (1162)
+.=+--|.|++| +++|.++-.. +....+-++++.|.+.|| ||=|--- ++.| .|++|+...
T Consensus 121 L~riNISLDsLd----~~~f~~IT~~--------~~l~~Vl~gI~~A~~~G~~~vKiN~V-~~~g------~N~dEi~~l 181 (334)
T PRK00164 121 LTRVNVSLDSLD----PERFKAITGR--------DRLDQVLAGIDAALAAGLEPVKVNAV-LMKG------VNDDEIPDL 181 (334)
T ss_pred CCEEEEEEEECC----HHHHHHHHCC--------CCHHHHHHHHHHHHHCCCCCEEEEEE-EECC------CCHHHHHHH
T ss_conf 986997113189----9999998489--------97599999999999589876168999-6379------898999999
Q ss_pred HHHHH
Q ss_conf 99752
Q gi|254780439|r 801 LLDTL 805 (1162)
Q Consensus 801 l~~a~ 805 (1162)
++-+.
T Consensus 182 i~~~~ 186 (334)
T PRK00164 182 LRWAK 186 (334)
T ss_pred HHHHH
T ss_conf 99996
No 204
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.20 E-value=0.11 Score=31.13 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 22356777418997276302014766531899999999965980699606865
Q gi|254780439|r 611 SEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 611 ~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
.+..|.++|||+|+|+|| ....|+..+.++|++++++-.+|.
T Consensus 10 ~~~~p~~gkkV~IIGaGP-----------aGlsAA~~aa~~G~~v~viEk~~~ 51 (350)
T PRK12770 10 KEKPPPTGKKVAIIGAGP-----------AGLAAAGYLACLGHEVHVYDKLPE 51 (350)
T ss_pred CCCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 789998979899999558-----------899999999978998599953696
No 205
>PRK10083 putative dehydrogenase; Provisional
Probab=94.16 E-value=0.19 Score=29.19 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=52.1
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHC-CCC-EEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHH
Q ss_conf 6777418997276302014766531899999999965-980-69960686521123245-86379841678899999987
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEA-GFE-TIMINCNPETVSTDYDI-ADRLYFESLTEEDILEILRV 691 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~-G~~-tImIN~NPETVSTDyd~-sDrLYFEplt~E~V~~I~~~ 691 (1162)
+..++.|+|+|+||. | ..+++.+|.. |.+ .|.+-.||+-...--.. +|... . -+.|++.+.+..
T Consensus 158 ~~~g~~VlV~G~G~i--G---------l~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~vi-~-~~~~~~~~~~~~ 224 (339)
T PRK10083 158 PTEQDVALIYGAGPV--G---------LTIVQVLKGVYGVKNVIVADRIDERLALAKESGADWVI-N-NAQESLAEALAE 224 (339)
T ss_pred CCCCCEEEEECCCHH--H---------HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEE-C-CCCCCHHHHHHH
T ss_conf 999988999587659--9---------99999999856997899937989999999971998998-4-887669999985
Q ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEECCCC
Q ss_conf 485678227998445124668988888759--838612752
Q gi|254780439|r 692 EQQKGELVGIIVQFGGQTPLKLSKILEKNQ--IPILGTQPD 730 (1162)
Q Consensus 692 E~p~g~~~~vi~q~gGqt~~~la~~L~~~g--v~ilGts~~ 730 (1162)
...+. .-|+-..|+...++.+..+-+.| +-++|.+.+
T Consensus 225 ~G~~~--dvvid~~g~~~~~~~a~~~~~~gG~iv~~G~~~~ 263 (339)
T PRK10083 225 KGVKP--TLIFDAACHPSILEEAVTLASPAARIVLMGFSSE 263 (339)
T ss_pred CCCCC--CEEEECCCCHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 39996--1999666688999999998518809999925899
No 206
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.13 E-value=0.45 Score=26.26 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=47.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCC-CCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513-10043379999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA-DATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~a-D~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
||||+|+-.. -|.|.++.|.+.|++|..+--||.....-.... .-++..-..++.+..-+ +..|+++
T Consensus 2 ~ILV~GATG~----------lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al--~GvdaVi 69 (319)
T CHL00194 2 SLLVIGATGT----------LGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPAL--EGITAII 69 (319)
T ss_pred EEEEECCCCH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHH--CCCCEEE
T ss_conf 7999899858----------999999999968890899957867632342159679994278877899996--5996799
Q ss_pred ECCC
Q ss_conf 7588
Q gi|254780439|r 88 PTTG 91 (1162)
Q Consensus 88 p~~G 91 (1162)
-..+
T Consensus 70 ~~~~ 73 (319)
T CHL00194 70 DAST 73 (319)
T ss_pred EECC
T ss_conf 9456
No 207
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.12 E-value=0.11 Score=31.23 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=36.5
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCEEE
Q ss_conf 977665569999767754205054666888999999998797--8999748765010
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNPATIM 55 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNpaTi~ 55 (1162)
||+. =++||+|||.|=| |..-.+|||+.|+ +++.++.|++|..
T Consensus 1 ~~~~-~f~~I~IiGlGLI-----------GgSlA~alk~~~~~~~I~g~d~~~~~l~ 45 (307)
T PRK07502 1 MSAP-LFDRVALIGLGLI-----------GSSLARAIRRQGLAGEIVGAARSAETRA 45 (307)
T ss_pred CCCC-CCCEEEEEEECHH-----------HHHHHHHHHHCCCCCEEEEEECCHHHHH
T ss_conf 9856-4566899927879-----------9999999985499857999849999999
No 208
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.11 E-value=0.19 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=31.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 99997677542050546668889999999987978999748765010
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
||+|+|+|-. |++-++.|.++|..+++|..||..+.
T Consensus 2 ~IiI~GaG~v-----------G~~La~~Ls~e~~dV~vID~d~~~~~ 37 (455)
T PRK09496 2 KIIILGAGQV-----------GGTLAERLVGENNDVTVIDTDEERLR 37 (455)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 7999998889-----------99999999868997999989999999
No 209
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.03 E-value=0.43 Score=26.42 Aligned_cols=44 Identities=27% Similarity=0.541 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 777418997276302014766531899999999965980699606865211232
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDY 669 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDy 669 (1162)
.+-+||-|+|+|.. |.||-+ .++-..|++++|+--|||.+.--.
T Consensus 307 ~~i~kv~ViGaG~M--G~gIA~--------~~a~~aG~~V~l~D~~~e~l~~~~ 350 (706)
T PRK11154 307 RPVNKVGVLGGGLM--GGGIAY--------VTATKAGLPVRIKDINPQGINHAL 350 (706)
T ss_pred CCCCEEEEECCCCC--CHHHHH--------HHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 76767999864732--389999--------999986987999979999999999
No 210
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=93.66 E-value=0.1 Score=31.47 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=28.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 6999976775420505466688899999999879789997487
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
|||.|||+||- |--|+|+|.|+|++++..-.+
T Consensus 2 KrVAIIGAG~S-----------GL~a~K~lle~G~~~~~FE~~ 33 (532)
T pfam00743 2 KKVAVIGAGVS-----------GLSSIKCCLEEGLEPTCFERS 33 (532)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECC
T ss_conf 87999897299-----------999999998779982999779
No 211
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=93.48 E-value=0.43 Score=26.49 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=62.0
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHH-HHHHHHC--CCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 1899727630201476653189999-9999965--980699606865211232458637984167889999998748567
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEA--GFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~--G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
||||+|||.- =|| +|+|++. ..+......||-+-. .+...-..+..++.+.+.+..++++=
T Consensus 1 kILvIGsGgR------------EHAi~~~l~~s~~~~~l~~~pgN~gi~~----~~~~~~i~~~d~~~i~~~~~~~~idl 64 (99)
T pfam02844 1 KVLVVGSGGR------------EHALAWKLAQSPRVEKVYVAPGNPGTAQ----LAKNVNIDITDFEALADFAKEENIDL 64 (99)
T ss_pred CEEEECCCHH------------HHHHHHHHHCCCCCCEEEEECCCCHHHH----HCEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 9899878879------------9999999964999776999589815777----47501458447999999999819749
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCH
Q ss_conf 82279984451246689888887598386127520
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDS 731 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~ 731 (1162)
|++-=---...-++..|.++|++++|++-.+
T Consensus 65 ----viiGPE~pL~~Gl~D~l~~~gi~vfGP~k~a 95 (99)
T pfam02844 65 ----VVVGPEAPLVAGIVDALRAAGIPVFGPSKAA 95 (99)
T ss_pred ----EEECCCHHHHHHHHHHHHHCCCEEECCCHHH
T ss_conf ----9989606778788999986899179928688
No 212
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.32 E-value=0.61 Score=25.23 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=75.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCC-----CCCCCEEECCCCHHHHHHHHHHHC
Q ss_conf 699997677542050546668889999999987978999748765010784-----513100433799999999998628
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDP-----DLADATYTEPITPEVVAKIIEKER 82 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~-----~~aD~vY~ePlt~e~v~~Ii~~E~ 82 (1162)
|||+|+|-|-. |..+++.|++.|+++++++.++.....+. .....+++.+-..+ + .+.
T Consensus 15 k~v~V~GlG~s-----------G~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~-----~~~ 77 (481)
T PRK01438 15 LRVVVAGLGVS-----------GFPAADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETT-L-----PEG 77 (481)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHH-H-----HCC
T ss_conf 98999957588-----------999999999679989999799874486899988854988996887566-6-----248
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
.|-|+.+=|=-.-........ +.||++++ +=++|.+++.+..-+.|
T Consensus 78 ~d~vV~SPGI~~~~p~~~~a~------~~gi~i~~----------eiel~~~~~~~~~~~~~------------------ 123 (481)
T PRK01438 78 TELVVTSPGWRPTHPLLAAAA------EAGIPVWG----------DVELAWRLRDPDGTPAP------------------ 123 (481)
T ss_pred CCEEEECCCCCCCCHHHHHHH------HCCCCEEC----------HHHHHHHHHHCCCCCCC------------------
T ss_conf 999998997899899999999------86993861----------89999987521368887------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 3333444444443333222111111233444444455444899999999987199699
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLI 220 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvi 220 (1162)
...++|.++..++..-.-...+.-|+.+.
T Consensus 124 -----------------------------~IaVTGTnGKTTTtsli~~iL~~~g~~~~ 152 (481)
T PRK01438 124 -----------------------------WLAVTGTNGKTTTVQMLASILRAAGLRAA 152 (481)
T ss_pred -----------------------------EEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf -----------------------------89993899746099999999996699707
No 213
>PRK12458 glutathione synthetase; Provisional
Probab=93.18 E-value=0.42 Score=26.52 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 899999999987199-6999413267866451116999--9999999899857998279866449978999999972899
Q gi|254780439|r 203 HAMAVAVQALDEIGL-PLIIRPSFTLGGTGGGIAYNRS--EFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKG 279 (1162)
Q Consensus 203 ~s~~ea~~~a~~iGy-PvivRps~~lGG~G~~iv~n~e--eL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~g 279 (1162)
.+.++..+|.++... .+++||-++.||.|--.+...+ -|..+++... ..+++.+.|||...++=+.-|+= -+|
T Consensus 154 ~d~~~I~~F~~~~k~~~iIlKPL~G~GG~gIf~i~~~d~~Nl~~I~e~~~---~~~~vm~Q~flpei~~GDkRIil-inG 229 (349)
T PRK12458 154 RNREEIRAFLEESPSDKMILKPLQGSGGQGVFLIEKSAESNLNQILEFYS---GDGYVIAQEYIPGAEEGDVRILM-LNG 229 (349)
T ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH---CCCCEEEECCCHHCCCCCEEEEE-ECC
T ss_conf 79999999999815883898646788887638863574341999999970---48819999210034168869999-999
Q ss_pred CEEEE----EECCCCCCCCCCCCEEEE-------ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-EECCCCE
Q ss_conf 88999----630000001000010134-------33732289889999999999999871834576468999-9558984
Q gi|254780439|r 280 NCIVV----CSIENLDPMGVHTGDSIT-------VAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFA-VNPKNGK 347 (1162)
Q Consensus 280 n~i~v----~~~En~dp~GiHtGDSi~-------vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFA-v~p~~~~ 347 (1162)
..+-. +.+ .+|++.++.- .+=..+||++++..-. +|+..|.=+ |. .|| +|= =|+
T Consensus 230 epi~~~~~~gal-----~RiP~~gd~R~Nl~~GG~~~~~~Lt~~d~~I~~----~i~p~L~~~-gl---~fvGiDv-IG~ 295 (349)
T PRK12458 230 EPLERDGRYAAM-----RRVPAEGDVRSNIHAGGTVVKHTLTKEELELCE----HIRPKLVRD-GL---FFVGLDI-VGD 295 (349)
T ss_pred EEECCCCCEEEE-----ECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHH----HHHHHHHHC-CC---EEEEEEE-ECC
T ss_conf 991144541356-----535667613556526886303688999999999----999999987-99---8999986-178
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 9998504443103578887634614767
Q gi|254780439|r 348 MVVIEMNPRVSRSSALASKATGFPIAKI 375 (1162)
Q Consensus 348 ~yvIEvNpR~sRssalaskatgypia~v 375 (1162)
|++|+|--..--.-=..+.+|..+|..
T Consensus 296 -~LtEINVTSPtgi~ei~~~~~~~~a~~ 322 (349)
T PRK12458 296 -KLIEVNVFSPGGLGRINKLNNVDFSET 322 (349)
T ss_pred -CEEEECCCCCHHHHHHHHHHCCCHHHH
T ss_conf -456881789602999987519986999
No 214
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.12 E-value=0.21 Score=28.88 Aligned_cols=39 Identities=28% Similarity=0.592 Sum_probs=33.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 977665569999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
|.+++. .-|+|+|+||. |.-+..+|...|++|++|..++
T Consensus 1 m~~~~~-~DV~IvGaGp~-----------Gl~lA~~L~~~G~~v~liE~~~ 39 (392)
T PRK08773 1 MSRRSR-RDAVIVGGGVV-----------GAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCC-CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999-98899990699-----------9999999986699789991789
No 215
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.07 E-value=0.14 Score=30.34 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5569999767754205054666888999999998797899974876
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
.=|||+|||+||- |..|...+...|++|+++..+|
T Consensus 16 ~gkkV~IIGaGPa-----------GlsAA~~aa~~G~~v~viEk~~ 50 (350)
T PRK12770 16 TGKKVAIIGAGPA-----------GLAAAGYLACLGHEVHVYDKLP 50 (350)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECC
T ss_conf 9798999995588-----------9999999997899859995369
No 216
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.95 E-value=0.69 Score=24.84 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 99999999999875303760------279999865337998899988589999999889863984799862143244366
Q gi|254780439|r 519 QQIKMIVDVEHRIREHGLPK------DFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSS 592 (1162)
Q Consensus 519 ~~i~~iv~~e~~l~~~~~~~------~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a 592 (1162)
+-++|+..+-.-|...-+-+ -++.+..|++.|+++..+-++.+.....=++.|.+-+|-..=--|-..|-+...
T Consensus 91 ~Av~HLfrVasGLdS~VlGE~qIlgQvK~A~~~A~~~g~~g~~L~~lfq~A~~~aKrVRteT~I~~~~vSv~~~av~~a~ 170 (311)
T cd05213 91 DAVRHLFRVASGLDSMVVGETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSAAVELAE 170 (311)
T ss_pred HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999872340010484789999999999999819813899999999999999887616788898889999999999
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCCCCCCC
Q ss_conf 58558972067766655322356777418997276302014766531899999999965980699-60686521123245
Q gi|254780439|r 593 PTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIM-INCNPETVSTDYDI 671 (1162)
Q Consensus 593 ~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tIm-IN~NPETVSTDyd~ 671 (1162)
. .-.....++++|+|.|- ++-.+++.|++.|...|. .|-+++-. -..
T Consensus 171 ~------------------~~~~l~~~~vLviGaGe-----------m~~l~~~~L~~~g~~~i~v~nRt~~ra---~~l 218 (311)
T cd05213 171 K------------------IFGNLKGKKVLVIGAGE-----------MGELAAKHLAAKGVAEITIANRTYERA---EEL 218 (311)
T ss_pred H------------------HHCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCCHHHH---HHH
T ss_conf 8------------------71872116799986879-----------999999999965998259976867899---999
Q ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
Q ss_conf 8637984167889999998748567822799844512466
Q gi|254780439|r 672 ADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPL 711 (1162)
Q Consensus 672 sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~ 711 (1162)
+.++=..++.++++.+.+..- +=||+.+|...+.
T Consensus 219 a~~~g~~~~~~~~l~~~l~~~------DvvisaT~s~~~~ 252 (311)
T cd05213 219 AKELGGNAVPLDELLELLNEA------DVVISATGAPHYA 252 (311)
T ss_pred HHHCCCEEECHHHHHHHHHHC------CEEEEECCCCCCH
T ss_conf 997498997299999999768------9999927999620
No 217
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=92.91 E-value=0.15 Score=30.05 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=47.2
Q ss_pred EEECCHHHHHHHHHHHCCCCCCC----------CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEE
Q ss_conf 74199999999999983887988----------72599996441289999999999988989999388899999879815
Q gi|254780439|r 1008 GIDQDFPLAFAKSQLGIGVDLPH----------EGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLET 1077 (1162)
Q Consensus 1008 gig~~~~eA~~Ka~~a~g~~lP~----------~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~GTa~~L~~~Gi~~ 1077 (1162)
.+|+.+++=|.++|.-.|.++-+ .+++.+.+-|..-.+..++-..|.-|.--+.-++|+-+.=+--|+..
T Consensus 412 afG~~yEefY~~~Q~~~GV~fIRGrvaeI~e~p~~~liV~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~ 491 (622)
T COG1148 412 AFGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQ 491 (622)
T ss_pred CCCCCHHHHHHHHHHHHCCEEECCCEEEEEECCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCC
T ss_conf 46642699999878860853664641016887998369998603467311123337999504445765688887548651
Q ss_pred EEEECCCCCCCCH
Q ss_conf 6975056878107
Q gi|254780439|r 1078 QKINKVLEGRPHI 1090 (1162)
Q Consensus 1078 ~~v~k~~e~~~~i 1090 (1162)
..-..+.+.+|.+
T Consensus 492 ~~~gF~k~~hPkl 504 (622)
T COG1148 492 DEDGFLKEAHPKL 504 (622)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7877603478776
No 218
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=92.87 E-value=0.66 Score=24.97 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=46.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCC-CEEEC-CCCHHHHHHHHHHHCCCEEE
Q ss_conf 99976775420505466688899999999879789997487650107845131-00433-79999999999862898899
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD-ATYTE-PITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD-~vY~e-Plt~e~v~~Ii~~E~pDaIl 87 (1162)
|||.|+-. +-|++-++.|.+.|++++.+.-++........... +.+.. =...+.+.++++..+||.|+
T Consensus 1 ILItGasG----------fiG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~D~Vi 70 (235)
T pfam01370 1 ILVTGGTG----------FIGSALVRRLLQEGYEVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLLAEVQPDAVI 70 (235)
T ss_pred EEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 79972897----------99999999999787989999899730122211467659996588999999998538998999
Q ss_pred ECC
Q ss_conf 758
Q gi|254780439|r 88 PTT 90 (1162)
Q Consensus 88 p~~ 90 (1162)
-.-
T Consensus 71 hlA 73 (235)
T pfam01370 71 HLA 73 (235)
T ss_pred ECC
T ss_conf 897
No 219
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.85 E-value=0.25 Score=28.30 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 99997677542050546668889999999987978999748765010
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
||+|+|-|=| |..-.++||+.|++++.++.|+.++.
T Consensus 3 kI~IiGlGLI-----------GgSla~al~~~~~~V~g~d~~~~~~~ 38 (280)
T PRK07417 3 NIGIVGLGLI-----------GGSLGLDLRSLGHTVYGVSRRESTCE 38 (280)
T ss_pred EEEEEECCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 8999931857-----------99999999968997999979999999
No 220
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.85 E-value=0.53 Score=25.73 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 569999767754205054666888999999998797899974876501
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
.++|.|||+|-- |+.|..++-..|++|.|+.-.|...
T Consensus 3 ~~~ViVIGgGhA-----------G~EAA~a~Ar~G~~v~L~emrp~~~ 39 (434)
T PRK05335 3 MKPVNVIGAGLA-----------GSEAAWQLAKRGVPVELYEMRPVKK 39 (434)
T ss_pred CCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 885699898689-----------9999999996899679999335667
No 221
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=92.59 E-value=0.39 Score=26.80 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=27.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999976775420505466688899999999879789997487
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
.|.|||+|.- |+.|..++.+.|.+|.|+-.+
T Consensus 1 DViVIGgGhA-----------G~EAA~aaAr~G~~v~Lit~~ 31 (391)
T pfam01134 1 DVIVIGGGHA-----------GCEAALAAARMGAKVLLITHN 31 (391)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECC
T ss_conf 9799998789-----------999999998689968999734
No 222
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=92.51 E-value=0.051 Score=33.81 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=80.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE-----EECCCCHHHHHHHHHHHCC
Q ss_conf 99997677542050546668889999999987978999748765010784513100-----4337999999999986289
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT-----YTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v-----Y~ePlt~e~v~~Ii~~E~p 83 (1162)
||-|||+|.+ |.+....+-..|++|++...||+....-.+...+. -...++......++.+-++
T Consensus 1 kV~ViGaG~m-----------G~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 69 (180)
T pfam02737 1 KVAVIGAGTM-----------GAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISF 69 (180)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 9899997889-----------99999999967993999979989999999999998999997256756769999852410
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898886200023-44333332333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANA-TDIKEHDRKLH 162 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~-~~~~~~~~~~~ 162 (1162)
. +-++ .+... .++ .|+ -.||-+.=+++..++.--+++..+..+ ++....
T Consensus 70 ~---------~~l~---~~~~a--------dlV---iEa--v~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~i----- 119 (180)
T pfam02737 70 T---------TDLA---DAVDA--------DLV---IEA--VPENLDLKRELFAELDAIAPPDAILASNTSSLSI----- 119 (180)
T ss_pred C---------CCHH---HHCCC--------CEE---EEC--CCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCH-----
T ss_conf 5---------8899---97589--------999---992--5176889999999999743033088752676899-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEE
Q ss_conf 33334444444433332221111-------1123344444445544489999999998719-969994
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYAL-------ELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIR 222 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG-yPvivR 222 (1162)
+.+.+.......-+ ......+|.+++.+-.-..++.+.++++++| -||++|
T Consensus 120 ---------s~la~~~~~p~R~ig~HffnP~~~~pLVEIv~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 178 (180)
T pfam02737 120 ---------TELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVELAKKIGKTPVVVK 178 (180)
T ss_pred ---------HHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf ---------99997479876699975688777685388838999899999999999998799669972
No 223
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=92.47 E-value=0.7 Score=24.77 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=73.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCEEECCCCCCCCEE-----ECCCCHHHHHHHHHHH
Q ss_conf 699997677542050546668889999999987978-9997487650107845131004-----3379999999999862
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR-IILVNSNPATIMTDPDLADATY-----TEPITPEVVAKIIEKE 81 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~-vVlVNsNpaTi~TD~~~aD~vY-----~ePlt~e~v~~Ii~~E 81 (1162)
.||||+|.|.+ |+.+++.|--.|+. ..++++. +|.. .++.-..+ +.---.+...+-++.-
T Consensus 2 skVlivG~Ggl-----------G~~~~~~La~~Gvg~i~lvD~D--~ve~-sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~ 67 (134)
T pfam00899 2 SRVLVVGAGGL-----------GSPAAEYLARAGVGKLTLVDFD--TVEL-SNLNRQILFTESDIGKPKAEVAKERLRAI 67 (134)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHHCCCEEEEEECC--CCCC-CCCCCEEECCHHHCCCEEHHHHHHHHHHH
T ss_conf 88999898889-----------9999999999389749999895--6763-22272242336466881079999999977
Q ss_pred CCCEEEECCCCCH-HHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 8988997588702-68888998875962882875714998999860588999999998789888620
Q gi|254780439|r 82 RPDAILPTTGGQT-ALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSI 147 (1162)
Q Consensus 82 ~pDaIlp~~GGqt-alnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~ 147 (1162)
.|+.-+-.+-... .-|+. -.++++.+-+..+. ..+.|....+.|.+.++|..-+.
T Consensus 68 np~~~i~~~~~~i~~~~~~------~~~~~~DvVi~~~D-----n~~~r~~ln~~c~~~~ip~i~~~ 123 (134)
T pfam00899 68 NPDVEVEAYPERLTPENLE------ELLKGADLVVDALD-----NFAARYLLNDACVKRGIPLISAG 123 (134)
T ss_pred CCCCEEEEEECCCCHHHHH------HCCCCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8995899992567977876------42644889999989-----99999999999998599899955
No 224
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=92.41 E-value=0.31 Score=27.52 Aligned_cols=111 Identities=22% Similarity=0.239 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCC
Q ss_conf 67889999998748567822799844512---------466898888875983861275203310286789998887098
Q gi|254780439|r 680 LTEEDILEILRVEQQKGELVGIIVQFGGQ---------TPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDL 750 (1162)
Q Consensus 680 lt~E~V~~I~~~E~p~g~~~~vi~q~gGq---------t~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i 750 (1162)
+=.+.|..+++-.-.+| +.++++=.+|+ .-.+|..-+.++|+++||+++--|-..+.+. ... ..-
T Consensus 75 vPa~~vp~v~eECG~KG-Vkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~l--NAt---FA~ 148 (457)
T TIGR02717 75 VPAKLVPQVVEECGEKG-VKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKL--NAT---FAP 148 (457)
T ss_pred CCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHH--HHC---CCC
T ss_conf 28567999999986179-518999714864531678999999999997678817767362258144021--100---135
Q ss_pred CCCC-CC-CCCCHHHH-------HHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 6685-42-11215665-------556553697167513444456541255489999999997
Q gi|254780439|r 751 NQPR-NG-ISHSVEHA-------RLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLD 803 (1162)
Q Consensus 751 ~~p~-~~-~a~s~eea-------~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~ 803 (1162)
..|+ |. ..-|-.-| ....+++||=-+|-. |=+..=++.||-+|+.+
T Consensus 149 ~~p~~G~Iaf~SQSGAl~~a~Ldwa~~~~vGfS~~VS~-------GNkAD~~e~Dlley~~~ 203 (457)
T TIGR02717 149 TMPKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSL-------GNKADIDESDLLEYLAD 203 (457)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCEECCHHHHHHHHHC
T ss_conf 78898877789712589999999998727813477826-------74111165778889853
No 225
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=92.35 E-value=0.17 Score=29.54 Aligned_cols=73 Identities=25% Similarity=0.396 Sum_probs=46.9
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEECCCCCEEECCCCCCCCEE---ECCCCHHHHHHHHHHHC
Q ss_conf 569999767754205054666888999999998797-89997487650107845131004---33799999999998628
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY-RIILVNSNPATIMTDPDLADATY---TEPITPEVVAKIIEKER 82 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi-~vVlVNsNpaTi~TD~~~aD~vY---~ePlt~e~v~~Ii~~E~ 82 (1162)
=+|+||||+|.. |..++++|++.|+ ++.++|-++.... .+|++.- +..+.++.+.+.+ ..
T Consensus 12 ~~~vlVIGaG~~-----------~~~~~~~L~~~g~~~i~v~nRt~~ka~---~la~~~~~~~~~~~~~~~l~~~l--~~ 75 (134)
T pfam01488 12 GKKVLLIGAGEM-----------ARLAAKHLLSKGAKKITIANRTLEKAK---ELAEEFGGEEVEALPLDELEELL--AE 75 (134)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCHHHHH---HHHHHCCCCCEEEEECHHHHHHH--HH
T ss_conf 898999996099-----------999999999759988999547578999---99998499725898513544136--31
Q ss_pred CCEEEECCCCCHH
Q ss_conf 9889975887026
Q gi|254780439|r 83 PDAILPTTGGQTA 95 (1162)
Q Consensus 83 pDaIlp~~GGqta 95 (1162)
.|-|+.+-+....
T Consensus 76 ~DivI~aT~s~~~ 88 (134)
T pfam01488 76 ADIVISATSAPTP 88 (134)
T ss_pred CCEEEEECCCCCC
T ss_conf 9999992599973
No 226
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.31 E-value=0.44 Score=26.36 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 99999999999875303760------279999865337998899988589999999889863984799862143244366
Q gi|254780439|r 519 QQIKMIVDVEHRIREHGLPK------DFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSS 592 (1162)
Q Consensus 519 ~~i~~iv~~e~~l~~~~~~~------~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a 592 (1162)
+-++|+..+-.-|...-+-+ -++-+..|+..|.....+-++.+.....=++.|.+-+|-..=--|-..|-+...
T Consensus 94 ~Av~HLfrVasGLDSmVvGE~QIlGQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~ 173 (414)
T PRK13940 94 EVIMHLMKLACGLESMVLGEPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAK 173 (414)
T ss_pred HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999861341142483889999999999999839935899999999999877887623458888888999999999
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCC
Q ss_conf 585589720677666553223567774189972763020147665318999999999659806996-068652
Q gi|254780439|r 593 PTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI-NCNPET 664 (1162)
Q Consensus 593 ~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI-N~NPET 664 (1162)
. .-.....++|+|+|.|- ++.-+++.|++.|...|.| |-+++-
T Consensus 174 ~------------------~~~~l~~~~vlvvGaGe-----------m~~l~~k~L~~~g~~~i~v~nRt~~r 217 (414)
T PRK13940 174 R------------------QLDNISSKNVLIIGAGQ-----------TGELLFRHVTALAPKQIMLANRTIEK 217 (414)
T ss_pred H------------------HCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 8------------------62871228389966864-----------78999999997699879994575677
No 227
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=92.29 E-value=0.48 Score=26.10 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=36.9
Q ss_pred CCEEEEE-CCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 7418997-27630201476653189999999996598069960686521123245-863798416788999999874856
Q gi|254780439|r 618 RKKIVIL-GGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDI-ADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 618 ~kkviVl-GsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~-sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
++.|+|. |+|+. |+ .|++-.|..|-++|-+-+++|-...--+. +|. .+.. .-|++.+.+..-...
T Consensus 141 g~~vLi~gaaGgV--G~---------~avQlAk~~Ga~Vi~t~~s~~k~e~~~~lGA~~-vi~~-~~~~~~~~i~~~t~g 207 (327)
T PRK10754 141 DEQFLFHAAAGGV--GL---------IACQWAKALGAKLIGTVGSAQKAQRALKAGAWQ-VINY-REENIVERVKEITGG 207 (327)
T ss_pred CCEEEEECCCCCC--CH---------HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCE-EEEC-CCCCHHHHHHHHHCC
T ss_conf 9999998177611--26---------899999986999999989899999999669999-9989-999999999998689
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 78227998445124668988888759
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQ 721 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~g 721 (1162)
..+.-++-..||++.......|...|
T Consensus 208 ~gvdvv~D~vG~~~~~~~~~~l~~~G 233 (327)
T PRK10754 208 KKVRVVYDSVGKDTWEASLDCLQRRG 233 (327)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 98369998988899999999863498
No 228
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.24 E-value=0.77 Score=24.42 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=93.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999999659806996068652112324586379841678899999987485678227998445124668988888759
Q gi|254780439|r 642 CHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQ 721 (1162)
Q Consensus 642 v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~g 721 (1162)
..-+++..+.|.+-|-+- ==||+--.++.+|++.-+.. .+..+-..+-|-.=-++|..|.++|
T Consensus 49 ~~~~~~~~~~Gv~kvRlT----------------GGEPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AG 111 (322)
T COG2896 49 RRLVRAFAELGVEKVRLT----------------GGEPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAG 111 (322)
T ss_pred HHHHHHHHHCCCCEEEEE----------------CCCCHHHCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 999999997396458971----------------89831332799999987434-6442887445676799999999759
Q ss_pred CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCCEEECCHHHHHHH
Q ss_conf 8386127520331028678999888709866854211215665556553697-167513444456541255489999999
Q gi|254780439|r 722 IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF-PLLIRPSYVLGGRAMQIVYSENMLQDY 800 (1162)
Q Consensus 722 v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGy-PVLVRPSyVLGG~~M~Iv~~~~eL~~y 800 (1162)
++-+--|.|++| +++|.++- .+.....+-+.++.|.+.|| ||=|---- +.| -|.+|+...
T Consensus 112 l~rVNVSLDsld----~e~f~~IT--------~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kg------vNd~ei~~l 172 (322)
T COG2896 112 LDRVNVSLDSLD----PEKFRKIT--------GRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKG------VNDDEIEDL 172 (322)
T ss_pred CCEEEEECCCCC----HHHHHHHH--------CCCCHHHHHHHHHHHHHCCCCCEEEEEEE-ECC------CCHHHHHHH
T ss_conf 868995034499----89999886--------78929999999999997699855788898-469------887899999
Q ss_pred HHHH
Q ss_conf 9975
Q gi|254780439|r 801 LLDT 804 (1162)
Q Consensus 801 l~~a 804 (1162)
++-+
T Consensus 173 ~e~~ 176 (322)
T COG2896 173 LEFA 176 (322)
T ss_pred HHHH
T ss_conf 9998
No 229
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.13 E-value=0.54 Score=25.68 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCCCHHHHH
Q ss_conf 8999999997389788998
Q gi|254780439|r 490 RLRTVAQALRLGVSVEETH 508 (1162)
Q Consensus 490 Rl~~i~eAlr~G~sv~ei~ 508 (1162)
||-.++-|++.|+|++++.
T Consensus 388 ~I~~la~AI~~g~Tv~dL~ 406 (427)
T TIGR03385 388 RIDVLAAAIMAGLTVKDLF 406 (427)
T ss_pred HHHHHHHHHHCCCCHHHHH
T ss_conf 9999999998799799984
No 230
>PRK06847 hypothetical protein; Provisional
Probab=92.06 E-value=0.28 Score=27.90 Aligned_cols=36 Identities=36% Similarity=0.583 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 55699997677542050546668889999999987978999748765
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
..|||+|+|+||- |.-+..+|+..|++++++-.+|.
T Consensus 3 ~~kkV~IVGaG~a-----------GL~lA~~L~~~Gi~v~V~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIG-----------GMSAAIALRKAGISVDLVEIDPE 38 (375)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9987999996689-----------99999999967999999908999
No 231
>PRK11749 putative oxidoreductase; Provisional
Probab=92.03 E-value=0.35 Score=27.15 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=30.0
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6777418997276302014766531899999999965980699606865
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
+..+|||.|+||||= .--|+..|.+.||++.+.--+|+
T Consensus 137 ~~~gkkVAIIGaGPA-----------GLsAA~~Lar~G~~VtVfE~~~~ 174 (460)
T PRK11749 137 PKTGKKVAVIGAGPA-----------GLTAAHRLARKGYDVTIFEARDK 174 (460)
T ss_pred CCCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 678998999896789-----------99999999976984799704787
No 232
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=92.03 E-value=0.36 Score=27.02 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 977665569999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
|.+..| |+|+|+||. |.-...+|...|+++++|..++
T Consensus 1 M~~~~D---V~IvGaGp~-----------Gl~lA~~La~~G~~v~viE~~~ 37 (405)
T PRK08850 1 MMQSVD---VAIIGGGMV-----------GLALAAALKDSDLRIAVIEGQL 37 (405)
T ss_pred CCCCCC---EEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 999876---899991589-----------9999999985899789993799
No 233
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.00 E-value=0.88 Score=23.97 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=43.7
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 55699997677542050546668889999999987978999748765010784513100433799999999998628988
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
..|||||+|-|-. |..+++.|++.|.+++..+.++.....-+ .....|+.. .... .+..|-
T Consensus 2 ~~KkvlV~GlG~S-----------G~s~a~~L~~~g~~v~~~D~~~~~~~~~~-~~~~~~~~~-----~~~~--~~~~d~ 62 (418)
T PRK00683 2 GLQRVVVLGLGVT-----------GKSVARFLAQKGVYVIGVDNSLEALQSCP-YIHERYLEG-----AEEF--PEQVDL 62 (418)
T ss_pred CCCEEEEEEECHH-----------HHHHHHHHHHCCCEEEEECCCHHHHHHCC-HHHHHCCCC-----HHHC--CCCCCE
T ss_conf 9866999808887-----------99999999978298999829814545461-455540562-----3324--234989
Q ss_pred EEECCCC
Q ss_conf 9975887
Q gi|254780439|r 86 ILPTTGG 92 (1162)
Q Consensus 86 Ilp~~GG 92 (1162)
|+.+=|=
T Consensus 63 vv~SPGi 69 (418)
T PRK00683 63 VVRSPGI 69 (418)
T ss_pred EEECCCC
T ss_conf 9989985
No 234
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=91.99 E-value=0.89 Score=23.96 Aligned_cols=56 Identities=29% Similarity=0.602 Sum_probs=43.6
Q ss_pred EEEECC-CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999767-7542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 10 LLIIGA-GPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 10 vLviGs-Gpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
|||.|+ |-+ |++-++.|.+.|++|+.++-. ..| -...+.+.++++..+||.|+-
T Consensus 1 ILVtG~~Gfi-----------Gs~l~~~L~~~g~~v~~~~r~---------~~D-----~~d~~~l~~~~~~~~pd~Vih 55 (284)
T pfam04321 1 ILVTGANGQL-----------GRELTRLLAERGVEVVALDRP---------ELD-----LTDPEAVAALVREARPDVVVN 55 (284)
T ss_pred EEEECCCCHH-----------HHHHHHHHHHCCCEEEEECCC---------CCC-----CCCHHHHHHHHHHCCCCEEEE
T ss_conf 6996489989-----------999999998689989995486---------257-----889999999998649979997
Q ss_pred CC
Q ss_conf 58
Q gi|254780439|r 89 TT 90 (1162)
Q Consensus 89 ~~ 90 (1162)
.-
T Consensus 56 lA 57 (284)
T pfam04321 56 AA 57 (284)
T ss_pred CC
T ss_conf 24
No 235
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=91.87 E-value=0.79 Score=24.38 Aligned_cols=98 Identities=26% Similarity=0.414 Sum_probs=60.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
-|.|||+|.- |+.|..|.-..|.+|.||..|..||-. |+= =|
T Consensus 8 DVIViG~GhA-----------G~EAa~aaar~G~~t~lit~~~~~ig~---msC------------------------NP 49 (621)
T PRK05192 8 DVIVVGGGHA-----------GCEAALAAARMGAKTLLLTHNLDTIGQ---MSC------------------------NP 49 (621)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCEEE---EEC------------------------CC
T ss_conf 8899897579-----------999999999679967999658131158---604------------------------52
Q ss_pred CCCCCHHHHHHHHHHHCCC-----HHHHCC--EE----ECCCHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 5887026888899887596-----288287--57----14998999860588999999998789888
Q gi|254780439|r 89 TTGGQTALNTALSLKRMGV-----LDRYGV--EM----IGAKPETIDKAEDRSLFSKAMQNIPLATP 144 (1162)
Q Consensus 89 ~~GGqtalnl~~~L~e~gi-----l~~~~v--~~----lG~~~~~I~~~edR~~F~~~l~~~gip~~ 144 (1162)
++||---=.|..++..-|= -++-+| ++ =|+...+.+.--||.+|++.|.+.=..++
T Consensus 50 siGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~ 116 (621)
T PRK05192 50 AIGGIAKGHLVREIDALGGEMGKAADKTGIQFRMLNTSKGPAVRAPRAQADRKLYRAAMREILENQP 116 (621)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0367216576668775368999999887616876158888300673988859999999999996499
No 236
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=91.69 E-value=0.95 Score=23.72 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=122.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCC-CHHHHHHHHHHHCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501078451310043379-99999999986289889
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPI-TPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePl-t~e~v~~Ii~~E~pDaI 86 (1162)
.||||+|.-.- |-+.++.|.+.|+ +-.+.+--............+..+++ +.+.+.+.++.++.++|
T Consensus 1 ~~IlilgGT~e-----------~r~la~~L~~~g~-~~v~t~~~~~~~~~~~~~~~~~~G~l~~~~~m~~~i~~~~i~~v 68 (246)
T pfam02571 1 MRILILGGTTE-----------ARALAAALAAAGV-VSVVTSLAGRTAAPRLPPLPVRVGGFGGADGLAAYLREEGIDAV 68 (246)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCC-EEEEECCCHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 96999973689-----------9999999985698-79998475544376678850897998999999999997799799
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97588702688889988759628828757149989998605889999999987898886200023443333323333333
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEER 166 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~ 166 (1162)
+=.-- =-|..+++ ...+.|+++|+|...-. |
T Consensus 69 IDATH-----PfA~~is~--------------------------na~~a~~~~~ipyiR~e------------------R 99 (246)
T pfam02571 69 IDATH-----PFAAQISR--------------------------NAAAACKELGVPLLRLE------------------R 99 (246)
T ss_pred EECCC-----CCHHHHHH--------------------------HHHHHHHHHCCCEEEEC------------------C
T ss_conf 98999-----96899999--------------------------99999998599689960------------------6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 444444443333222111111233444444455444899999999987199-6999413267866451116999999999
Q gi|254780439|r 167 ENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGL-PLIIRPSFTLGGTGGGIAYNRSEFLEIV 245 (1162)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGy-PvivRps~~lGG~G~~iv~n~eeL~~~~ 245 (1162)
+ .|. ....-.|..+.|+++|.+.+.+.+. .|++ +.|- .+.++|..
T Consensus 100 --p------------------~~~--~~~~d~~~~v~s~~ea~~~l~~~~~~~Vll----ttG~------k~L~~f~~-- 145 (246)
T pfam02571 100 --P------------------AWQ--PGPGDRWIYVDSLAEAAAALAELPGKRVFL----TTGR------QELAAFAA-- 145 (246)
T ss_pred --C------------------CCC--CCCCCCEEEECCHHHHHHHHHHCCCCEEEE----EECC------CCHHHHHC--
T ss_conf --2------------------126--788987799799999999876467865898----4050------23899853--
Q ss_pred HHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98998579982798664499789999999728998899963000000100001013433732289889999999999999
Q gi|254780439|r 246 ENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325 (1162)
Q Consensus 246 ~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~ 325 (1162)
.+.+ -++=+-|-.+. . ..|+...+=|+.-|+.+... -..+.
T Consensus 146 ------~~~~-~~~~RvLp~~~------------~-----------~~g~~~~~iIa~~gPfs~e~---------n~al~ 186 (246)
T pfam02571 146 ------LPQH-RLLARVLPPPE------------A-----------ALGFPNAEIIAARGPFSLEL---------ERALL 186 (246)
T ss_pred ------CCCC-EEEEEECCCCC------------C-----------CCCCCHHCEEEECCCCCHHH---------HHHHH
T ss_conf ------8577-59999668865------------4-----------47998001899049999899---------99999
Q ss_pred HHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8718345764689999558984999850444310357888763461476777641344610135775
Q gi|254780439|r 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDI 392 (1162)
Q Consensus 326 r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~ 392 (1162)
+..++ +..|..++| .+|. .+|+.|-..+|..+-=|+.|.
T Consensus 187 ~~~~i-------~~lVtK~SG--------------------~~g~-~~Ki~AA~~lgi~vivI~RP~ 225 (246)
T pfam02571 187 RRHGI-------DVLVTKNSG--------------------GAGT-YAKLAAARELGLPVIMIKRPP 225 (246)
T ss_pred HHCCC-------CEEEEECCC--------------------CHHH-HHHHHHHHHCCCEEEEEECCC
T ss_conf 97099-------999992888--------------------6506-999999998499299995899
No 237
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=91.59 E-value=0.29 Score=27.78 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 9999999996598069960686521123245863798416788999999874856782279984451246689888887
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEK 719 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~ 719 (1162)
.-+|+...|+.|+.+|+| |||=||-.++.=.+-..+|=+.=||.- +.=|+=.+-||.++|.|...++
T Consensus 179 a~~Al~~Ak~~~~D~vI~-----------DTAGRL~ID~~LM~EL~~iK~~~nP~E-iLlVvDaM~GQdAvn~A~~F~e 245 (439)
T TIGR00959 179 ARQALEEAKENGFDVVIV-----------DTAGRLQIDEELMEELAEIKEILNPDE-ILLVVDAMTGQDAVNTAKTFNE 245 (439)
T ss_pred HHHHHHHHHHCCCCEEEE-----------ECCCCHHHHHHHHHHHHHHHHHHCCCE-EEECCHHCCHHHHHHHHHHHCC
T ss_conf 999999999748978997-----------267512555999999999988868870-5412201021699999986366
No 238
>PRK07208 hypothetical protein; Provisional
Probab=91.54 E-value=0.33 Score=27.37 Aligned_cols=34 Identities=38% Similarity=0.774 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 569999767754205054666888999999998797899974876
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
-|||+|||+||- |.-|..-|++.|+++.++-.++
T Consensus 3 ~kkv~IiGAG~~-----------GL~aA~~L~~~g~~v~vlEk~~ 36 (474)
T PRK07208 3 KKSVVIIGAGPA-----------GLTAAYELVKRGYPVTILEADP 36 (474)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 875999897689-----------9999999986899759997899
No 239
>pfam01326 PPDK_N Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).
Probab=91.52 E-value=0.99 Score=23.59 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 66899999999999999987413357624788512885999852444
Q gi|254780439|r 883 RSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929 (1162)
Q Consensus 883 qsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpR 929 (1162)
+.|+++..++|.+.+.+|-..++. +..|+|+++++++|++++-|=
T Consensus 258 ~~l~~~~~~~L~~~~~~lE~~~g~--pqDIEwai~~g~l~iLQ~RPi 302 (327)
T pfam01326 258 PVLTDAQLQELAELAKRLEAHFGS--PQDIEWAIDGGRLYILQARPI 302 (327)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEEEECCEEEEEECCCC
T ss_conf 679999999999999999998299--823179999999999964267
No 240
>KOG0024 consensus
Probab=91.39 E-value=0.68 Score=24.86 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=3.8
Q ss_pred EEEEECCCCE
Q ss_conf 1899727630
Q gi|254780439|r 620 KIVILGGGPN 629 (1162)
Q Consensus 620 kviVlGsGp~ 629 (1162)
+|+|+|.||+
T Consensus 172 ~vLV~GAGPI 181 (354)
T KOG0024 172 KVLVLGAGPI 181 (354)
T ss_pred EEEEECCCHH
T ss_conf 6899767689
No 241
>KOG2799 consensus
Probab=91.26 E-value=0.87 Score=24.02 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=53.0
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCC-----------CEEECCHHHHHHHHHHHH
Q ss_conf 9988870986685421121566555655369-716751344445654-----------125548999999999752
Q gi|254780439|r 742 QKLLMELDLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGRA-----------MQIVYSENMLQDYLLDTL 805 (1162)
Q Consensus 742 ~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~~-----------M~Iv~~~~eL~~yl~~a~ 805 (1162)
.+||.+-|+..|++..|.|.+||.++|+++| --+.|+..---|||+ -+||++.+|-+..-..-+
T Consensus 31 ~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~qmi 106 (434)
T KOG2799 31 AALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMI 106 (434)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 9999971878887755688789999999708864599752010576667737676786379767588888899763
No 242
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.23 E-value=0.58 Score=25.40 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=48.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHC---CCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 9997677542050546668889999999987---9789997487650107845131004337999999999986289889
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEE---GYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~---Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaI 86 (1162)
|+|+|+| |+|..+++.|+.. +++++||++|+. .|+.|+-++.+...... +.+
T Consensus 2 iVIvGgG-----------~aG~~~a~~L~~~~~~~~~ItLId~~~~-----------~~y~~~lp~~~~g~~~~---~~i 56 (364)
T TIGR03169 2 LVLIGGG-----------HTHALVLRRWAMKPLPGVRVTLINPSST-----------TPYSGMLPGMIAGHYSL---DEI 56 (364)
T ss_pred EEEECCH-----------HHHHHHHHHHCCCCCCCCEEEEECCCCC-----------CEECCHHHHHHHCCCCH---HHE
T ss_conf 9999960-----------9999999997041789983999999886-----------51625169997404779---992
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHC
Q ss_conf 97588702688889988759628828757149989998605
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAE 127 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~e 127 (1162)
.. .+.. .+.+.|++++-.....|+..+
T Consensus 57 ~~--------~~~~------~~~~~gv~~i~~~V~~ID~~~ 83 (364)
T TIGR03169 57 RI--------DLRR------LARQAGARFVIAEATGIDPDR 83 (364)
T ss_pred EC--------CHHH------HHHHCCCEEEEEEEEEEECCC
T ss_conf 21--------6899------997779499963789997688
No 243
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=91.23 E-value=0.68 Score=24.85 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=27.2
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9997677542050546668889999999987978999748765
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|+|||+||- |..|...|+..|+++++|..++.
T Consensus 2 VvIIGgG~A-----------Gl~aA~~l~~~g~~v~lid~~~~ 33 (277)
T pfam07992 2 VVIIGGGPA-----------GLAAAIYLARLGLKVALIEKEGG 33 (277)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999997699-----------99999999849997999937999
No 244
>PRK07608 hypothetical protein; Provisional
Probab=91.15 E-value=0.37 Score=26.93 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=31.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 99997677542050546668889999999987978999748765010
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
-|+|+|+||. |.-+..+|...|++|++|..+|.+-.
T Consensus 7 DV~IvGaGp~-----------Gl~lA~~La~~G~~v~viE~~~~~~~ 42 (389)
T PRK07608 7 DVAVVGGGLV-----------GKSLALALAQSGLRVALLEAQPPAPR 42 (389)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 8899990689-----------99999999837998899958998766
No 245
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.12 E-value=1 Score=23.45 Aligned_cols=39 Identities=23% Similarity=0.563 Sum_probs=28.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCC
Q ss_conf 97766556999976775420505466688899999999879--78999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsNpa 52 (1162)
|.++ -+||-|||+|-+ |+....+|...| =+.+|++-|+.
T Consensus 2 m~~k--~~KI~IIGaG~V-----------G~~~a~~l~~~~l~~el~LiD~~~~ 42 (315)
T PRK00066 2 MKKK--HNKVVLVGDGAV-----------GSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCC--CCEEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 8878--984999997988-----------9999999986699888999808987
No 246
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.04 E-value=0.38 Score=26.85 Aligned_cols=56 Identities=27% Similarity=0.573 Sum_probs=38.3
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEC-CCC--CCCCEE-ECCCCHHHHHH
Q ss_conf 99976775420505466688899999999879789997487650107-845--131004-33799999999
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMT-DPD--LADATY-TEPITPEVVAK 76 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~T-D~~--~aD~vY-~ePlt~e~v~~ 76 (1162)
|+|+|+||. |.-...+|+..|+++++|..+|.++.. +.+ ..-+++ +-|-+.+.+.+
T Consensus 5 V~IvGaGpv-----------Gl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~ 64 (405)
T PRK05714 5 LLIVGAGMV-----------GSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILER 64 (405)
T ss_pred EEEECCCHH-----------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH
T ss_conf 999990599-----------999999996189978999589977787766778984255677998999998
No 247
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.00 E-value=1.1 Score=23.22 Aligned_cols=113 Identities=20% Similarity=0.298 Sum_probs=58.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 69999767754205054666888999999998797899974876501078451310043379999999999862898899
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
++|.|-|.|-. |..+++-|.++|-++|....|+..+..- .+..-.+.++.+. +-...+|-++
T Consensus 29 k~VaIqG~GnV-----------G~~~A~~l~~~Gakvvv~d~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~DIl~ 90 (200)
T cd01075 29 KTVAVQGLGKV-----------GYKLAEHLLEEGAKLIVADINEEAVARA---AELFGATVVAPEE----IYSVDADVFA 90 (200)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHH---HHCCCCEEECCHH----HHCCCCCEEE
T ss_conf 99999898799-----------9999999996799799982688999999---8568988937332----3227776886
Q ss_pred E-CCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7-58870268888998875962882875714998999860588999999998789888620002
Q gi|254780439|r 88 P-TTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 88 p-~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
| .+||+---+-+..|.-..|.+--|-++- + ..-.+.|.+-|+.+.|..+++
T Consensus 91 PcA~~~~i~~~~a~~i~ak~I~e~AN~p~t--~----------~~~~~~L~~rgI~~iPD~laN 142 (200)
T cd01075 91 PCALGGVINDDTIPQLKAKAIAGAANNQLA--D----------PRHGQMLHERGILYAPDYVVN 142 (200)
T ss_pred ECCCCCCCCHHHHHHCCCCEEEECCCCCCC--C----------HHHHHHHHHCCEEEECHHHEE
T ss_conf 514115468999987089699735679999--9----------789999985992996824420
No 248
>KOG1371 consensus
Probab=90.97 E-value=0.98 Score=23.61 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=33.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCEEECCCCCCC-----CEEECC-CCHHHHHHH
Q ss_conf 699997677542050546668889999999987978999748----7650107845131-----004337-999999999
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS----NPATIMTDPDLAD-----ATYTEP-ITPEVVAKI 77 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs----NpaTi~TD~~~aD-----~vY~eP-lt~e~v~~I 77 (1162)
+.|||.|.-. |.|++.+-+|++.|+.|+.|++ +..++.--....+ .+|-.- -..+.+.++
T Consensus 3 ~~VLVtGgaG----------yiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kv 72 (343)
T KOG1371 3 KHVLVTGGAG----------YIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKL 72 (343)
T ss_pred CEEEEECCCC----------CEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 3799966876----------310599999986798179982433212467788998627877438998156689999999
Q ss_pred HHHHCCCEEEECCCCCHH
Q ss_conf 986289889975887026
Q gi|254780439|r 78 IEKERPDAILPTTGGQTA 95 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqta 95 (1162)
-..-++|+++- |++|-+
T Consensus 73 F~~~~fd~V~H-fa~~~~ 89 (343)
T KOG1371 73 FSEVKFDAVMH-FAALAA 89 (343)
T ss_pred HHHCCCCEEEE-EHHHHC
T ss_conf 86338865776-244413
No 249
>PTZ00318 NADH dehydrogenase; Provisional
Probab=90.92 E-value=0.39 Score=26.80 Aligned_cols=34 Identities=12% Similarity=0.370 Sum_probs=31.3
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
++|+|+|+| |.|.++.+.|+...++++||++|+.
T Consensus 11 prVVIlGgG-----------faGl~~ak~L~~~~~~VtLVdp~ny 44 (514)
T PTZ00318 11 PNVVVVGTG-----------WAGCYFARHLNPKLANLHVLSTRNH 44 (514)
T ss_pred CEEEEECCC-----------HHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 858999976-----------9999999973868982899999998
No 250
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=90.73 E-value=0.78 Score=24.39 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=16.7
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHH-HCCCCEEEEEC
Q ss_conf 74189972763020147665318999999999-65980699606
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLK-EAGFETIMINC 660 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr-~~G~~tImIN~ 660 (1162)
+||+.|.|.+|. .++.++.+. |+|.+.|.+++
T Consensus 288 GKkv~i~~g~~~-----------~~~~~~~~~~ElGmevv~~~~ 320 (415)
T cd01977 288 GKKVCIWTGGPK-----------LWHWTKVIEDELGMQVVAMSS 320 (415)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHHCCCEEEEECC
T ss_conf 998999758558-----------999999999866858999605
No 251
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.65 E-value=0.58 Score=25.40 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 777418997276302014766531899999999965980699606865
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
..+|||-|+|||| ..--|+..|...||++.+.--.|+
T Consensus 141 ~~gkkVAVIGsGP-----------AGLsaA~~Lar~G~~VtVfE~~~~ 177 (472)
T PRK12810 141 KTGKKVAVVGSGP-----------AGLAAADQLARAGHKVTVFERDDR 177 (472)
T ss_pred CCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6899899989778-----------999999999866975899725777
No 252
>PRK08013 hypothetical protein; Provisional
Probab=90.62 E-value=0.44 Score=26.38 Aligned_cols=57 Identities=14% Similarity=0.316 Sum_probs=38.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CEEECCCCCCCCEE-ECCCCHHHHHH
Q ss_conf 9999767754205054666888999999998797899974876-50107845131004-33799999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP-ATIMTDPDLADATY-TEPITPEVVAK 76 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp-aTi~TD~~~aD~vY-~ePlt~e~v~~ 76 (1162)
-|+|+|+||. |.-+..+|...|+++.+|..++ .....|....-+++ +.|-+.+.+.+
T Consensus 5 DV~IvGaGpv-----------Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~ 63 (400)
T PRK08013 5 DVAIVGGGMV-----------GLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTR 63 (400)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
T ss_conf 8899993599-----------9999999971899589991899876778888770444008999999998
No 253
>PRK09126 hypothetical protein; Provisional
Probab=90.50 E-value=0.5 Score=25.94 Aligned_cols=39 Identities=31% Similarity=0.753 Sum_probs=32.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCC
Q ss_conf 99997677542050546668889999999987978999748765010784
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDP 58 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~ 58 (1162)
-|+|+|+||. |.-+..+|...|+++++|..+|...-.++
T Consensus 5 DV~IvGaGp~-----------Gl~lA~~La~~G~~v~viE~~~~~~~~~~ 43 (392)
T PRK09126 5 DILVVGAGPA-----------GLSFARSLAGSGLKVTLIERQPLAALADP 43 (392)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 9999992589-----------99999999868998999908985334577
No 254
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=90.50 E-value=0.63 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.506 Sum_probs=29.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
-.|+|+|+||. |.-+..+|...|++|.+|..++.
T Consensus 6 ~DV~IvG~G~v-----------Gl~lAl~La~~G~~V~viE~~~~ 39 (391)
T PRK08020 6 TEIAIVGGGMV-----------GGALALGLAQHGFSVAVIEHAAP 39 (391)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 84899993699-----------99999999866997899948998
No 255
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina frisia Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer . The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) . This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=90.49 E-value=0.27 Score=28.04 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=48.8
Q ss_pred EEEEEECCHHHHH-HHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEE
Q ss_conf 5999964412899-99999999988-98999938889999987981569750568781078898679854
Q gi|254780439|r 1033 TVFVSVRDADKKR-IVPIIQNFKKL-GFKIMATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVH 1100 (1162)
Q Consensus 1033 ~vfisv~d~dK~~-~~~~a~~l~~l-Gf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~ 1100 (1162)
=++|.+.+-.|.| +.+.+.+|.+. +.++.||.+|.+-|.+.||.-. +... +=-.|..++++-.+.
T Consensus 31 PLLv~G~~l~~~Ek~~E~~~K~iekF~l~vvaTa~~~~~lieaGi~~~-s~~~--~L~~it~fL~dp~w~ 97 (170)
T TIGR00315 31 PLLVVGPNLEKDEKLLELVVKFIEKFDLPVVATADAIKALIEAGIEEK-SEEA--NLHEITQFLKDPEWK 97 (170)
T ss_pred CEEEECCCCHHCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCC-CCHH--HHHHHHHHHCCCCCC
T ss_conf 605336100121213455555564328864747311388885466211-1003--799999750688756
No 256
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.48 E-value=1.2 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 899999999987199699941326786645111699999999998998579
Q gi|254780439|r 203 HAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASP 253 (1162)
Q Consensus 203 ~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~ 253 (1162)
.-...|++.|++-+|-|+|=- +.+|...+++=+.+..+-.-...|
T Consensus 169 ~Iak~al~~ak~~~~DvvIvD------TAGRl~ide~Lm~El~~Ik~~~~P 213 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIVD------TAGRLHIDEELMDELKEIKEVINP 213 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEE------CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999997499889996------887330309999999999855398
No 257
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=90.38 E-value=0.78 Score=24.38 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=39.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEE-ECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 99997677542050546668889999999987--978999-748765010784513100433799999999998628988
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEE--GYRIIL-VNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~--Gi~vVl-VNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
||.|||.|.+ |..-+++++.. +.+++. +++|+.... ..+++.-+ | ......++++.+++|+
T Consensus 2 ki~iiG~G~~-----------g~~~~~~~~~~~~~~~i~ai~d~~~~~~~---~~~~~~~~-~-~~~~~~~~l~~~~iD~ 65 (120)
T pfam01408 2 RVGIVGAGKI-----------GRRHLRALNESQDGAELVGVLDPDPARAE---AVAESFGV-P-AYSDLEELLADPDVDA 65 (120)
T ss_pred EEEEEECHHH-----------HHHHHHHHHHCCCCCEEEEEECCCHHHHH---HHHHHHCC-C-EECCHHHHHHCCCCCE
T ss_conf 8999907799-----------99999999855999789999829999999---99998399-6-7886999973778898
Q ss_pred EEECCCCCHHHHHHHHHHHCC
Q ss_conf 997588702688889988759
Q gi|254780439|r 86 ILPTTGGQTALNTALSLKRMG 106 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L~e~g 106 (1162)
++..---.+-...+..+.+.|
T Consensus 66 v~I~tp~~~H~~~~~~~l~~g 86 (120)
T pfam01408 66 VSVATPPGLHFELALAALEAG 86 (120)
T ss_pred EEECCCHHHHHHHHHHHHHHC
T ss_conf 999087461899999999819
No 258
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=90.04 E-value=1.3 Score=22.65 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCH-HHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCHHH
Q ss_conf 999999998388798872599996441-28999999999998-8989999388899999879815697505687810788
Q gi|254780439|r 1015 LAFAKSQLGIGVDLPHEGTVFVSVRDA-DKKRIVPIIQNFKK-LGFKIMATEGTARFLESHGLETQKINKVLEGRPHIED 1092 (1162)
Q Consensus 1015 eA~~Ka~~a~g~~lP~~g~vfisv~d~-dK~~~~~~a~~l~~-lGf~l~AT~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d 1092 (1162)
-+..++++.. .+.-+|+.+... +.+++++.+..+.+ .+..+.||.++..-|.+.|++...+. --.+..
T Consensus 24 P~v~~~~Ikk-----AKrPllivG~~~~~d~elle~~iki~k~~~ipi~aTg~s~~~l~e~g~~~~~i~-----~~~l~~ 93 (171)
T PRK00945 24 PKIAAMMIKK-----AKRPLLVVGSLLLDDEELLDRAIKIAKAKNIPVAATGSSYKGLIEKGVKSKYIG-----LHELTN 93 (171)
T ss_pred HHHHHHHHHH-----CCCCEEEECHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCHHHEE-----HHHHHH
T ss_conf 9999999986-----279669976001168899999999998749856874452054564588712120-----999998
Q ss_pred HHH---------CCCEEEEEEC
Q ss_conf 986---------7985499967
Q gi|254780439|r 1093 AIS---------NRQVHLVINT 1105 (1162)
Q Consensus 1093 ~i~---------~~~i~lVINt 1105 (1162)
+++ +|..||||=+
T Consensus 94 ~L~dp~W~G~dG~G~yDlvif~ 115 (171)
T PRK00945 94 YLKDPNWKGLDGNGNYDLVIFI 115 (171)
T ss_pred HHHCCCCCCCCCCCCCCEEEEE
T ss_conf 8518887786888984689992
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.89 E-value=0.55 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=26.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE--EEEECCCC
Q ss_conf 699997677542050546668889999999987978--99974876
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR--IILVNSNP 51 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~--vVlVNsNp 51 (1162)
+||+|||+|+- |..|...||+.+.+ ++++-.++
T Consensus 2 ~kiVIIG~g~A-----------G~~aA~~lrk~~~~~eItvi~~e~ 36 (438)
T PRK13512 2 PKIVVVGAVAG-----------GATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 80999898499-----------999999999439199999996899
No 260
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.86 E-value=1.3 Score=22.52 Aligned_cols=140 Identities=13% Similarity=0.121 Sum_probs=76.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCC--CC--CCCEEECCCCHHHHHHHHHHHCC
Q ss_conf 699997677542050546668889999999987978999748765010784--51--31004337999999999986289
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDP--DL--ADATYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~--~~--aD~vY~ePlt~e~v~~Ii~~E~p 83 (1162)
|+|+|+|-|.. |..+++.|++.|+++...+.||.+-.... .. ...++..... + ...+.+
T Consensus 6 k~v~viGlG~s-----------G~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~-----~-~~~~~~ 68 (445)
T PRK04308 6 KKILVAGLGGT-----------GISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLK-----D-ALDNGF 68 (445)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCH-----H-HHCCCC
T ss_conf 98999998999-----------999999999789919999799995318999743699689937863-----6-501599
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898886200023443333323333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHE 163 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~ 163 (1162)
|-|+.+=|=-........+ .+.|++++ .+-++|.+.+.+-+-|
T Consensus 69 d~vV~SPgI~~~~p~l~~a------~~~gi~i~----------~~~el~~~~~~~~~~~--------------------- 111 (445)
T PRK04308 69 DILALSPGISERQPDIEAF------KQNGGRVL----------GDIELLADIVNRRGDK--------------------- 111 (445)
T ss_pred CEEEECCCCCCCCHHHHHH------HHCCCCEE----------CHHHHHHHHHHCCCCC---------------------
T ss_conf 9999899538999999999------97599571----------5999999998416995---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 33344444444333322211111123344444445544489999999998719969994132678664511
Q gi|254780439|r 164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGI 234 (1162)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~i 234 (1162)
.-.++|.++.-++..-.-...+..|+... ..|+-|.-+
T Consensus 112 ----------------------------~IaVTGTnGKTTTtsli~~iL~~~g~~~~-----~~GNiG~p~ 149 (445)
T PRK04308 112 ----------------------------VIAITGSNGKTTVTSLVGYLCIKCGLDTV-----IAGNIGTPV 149 (445)
T ss_pred ----------------------------EEEEECCCCCHHHHHHHHHHHHHCCCCEE-----EEEECCCCC
T ss_conf ----------------------------79994899837799999999997599629-----985037521
No 261
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=89.83 E-value=0.48 Score=26.06 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=16.6
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9997677542050546668889999999987978999748
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
|+|||+||- |.-|...|...|++|||+.=
T Consensus 3 V~viGGGPs-----------GA~AAe~LA~~G~~tiLlER 31 (408)
T TIGR02023 3 VAVIGGGPS-----------GAAAAETLARAGIETILLER 31 (408)
T ss_pred EEEEECCCC-----------HHHHHHHHHHCCCEEEEEEH
T ss_conf 789816850-----------68999999864974886302
No 262
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.76 E-value=0.83 Score=24.21 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 23567774189972763020147665318999999999659806996068652
Q gi|254780439|r 612 EDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPET 664 (1162)
Q Consensus 612 e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPET 664 (1162)
+..+..+|||-|+|||| ..--|++-|+.+||+..+---+|+-
T Consensus 187 ~~~~~tGKkVAIIGaGP-----------AGLsaAy~L~~~Gh~VTVfE~~~~~ 228 (652)
T PRK12814 187 ERAPKSGKKVAIIGAGP-----------AGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 88788899799968378-----------9999999999779906998158888
No 263
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.68 E-value=1.4 Score=22.42 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=29.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 6999976775420505466688899999999879789997487650
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPAT 53 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaT 53 (1162)
+||||+|.|-. |..+.+.|++.|.++++.+.++..
T Consensus 18 ~kvlV~GlG~S-----------G~s~a~~L~~~G~~v~~~D~~~~~ 52 (476)
T PRK00141 18 GRVLVAGAGVS-----------GLGIAKMLSELGCDVVVADDNETQ 52 (476)
T ss_pred CCEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCH
T ss_conf 98899922788-----------999999999789979999899870
No 264
>PRK12831 putative oxidoreductase; Provisional
Probab=89.67 E-value=0.78 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 567774189972763020147665318999999999659806996068652
Q gi|254780439|r 614 KVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPET 664 (1162)
Q Consensus 614 ~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPET 664 (1162)
.++.+|||-|+|||| ..--|+..|...||++.+.--+|+-
T Consensus 136 ~~~~gkkVAVIGsGP-----------AGLsaA~~La~~G~~VtVfE~~~~~ 175 (464)
T PRK12831 136 EEKKGKKVAVIGSGP-----------AGLTCAGDLAKKGYDVTIFEALHEP 175 (464)
T ss_pred CCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 878999899989768-----------9999999999769917998278888
No 265
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.63 E-value=0.61 Score=25.27 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE------EE-----CCCCHHHHHHH
Q ss_conf 99997677542050546668889999999987978999748765010784513100------43-----37999999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT------YT-----EPITPEVVAKI 77 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v------Y~-----ePlt~e~v~~I 77 (1162)
||||+|+|++ |+.+++-|--.|+..+-| +|.|.-+.. .| +---.+...+-
T Consensus 1 KVlvvGaGgl-----------G~e~lk~La~~Gvg~i~i--------vD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~ 61 (312)
T cd01489 1 KVLVVGAGGI-----------GCELLKNLVLTGFGEIHI--------IDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61 (312)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEE--------ECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 9899888888-----------999999999828985999--------719922610146682768221887099999999
Q ss_pred HHHHCCCEEEECCCCCH-HHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98628988997588702-6888899887596288287571499899986058899999999878988862000
Q gi|254780439|r 78 IEKERPDAILPTTGGQT-ALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILA 149 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqt-alnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~ 149 (1162)
+++-.|+--+..+-+.. --+.. ...++++++-+- +.+..+-|....+.|...++|...|++.
T Consensus 62 l~~~Np~v~I~~~~~~i~~~~~~-----~~f~~~~DvVi~-----alDN~~aR~~vN~~C~~~~~PlIegGt~ 124 (312)
T cd01489 62 VLSFNPNVKIVAYHANIKDPDFN-----VEFFKQFDLVFN-----ALDNLAARRHVNKMCLAADVPLIESGTT 124 (312)
T ss_pred HHHHCCCCEEEEECCCCCCCCCC-----HHHHHHCCEEEE-----CCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99888896799861676686434-----988962999997-----6678999999999999839975972024
No 266
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=89.56 E-value=0.55 Score=25.60 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=22.1
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 7418997276302014766531899999999965980699606865
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
.++++|+|+|+- ...|+..|.+.||+++||-.||.
T Consensus 124 ~~svLVIGGGvA-----------GitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVA-----------GITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred CCCEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 053599868489-----------89999999975980899941786
No 267
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=89.37 E-value=1.5 Score=22.25 Aligned_cols=76 Identities=18% Similarity=0.425 Sum_probs=48.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCEEECCCCCCC-C-EEEC-C-CCHHHHHHHHHH
Q ss_conf 99997677542050546668889999999987978999748----7650107845131-0-0433-7-999999999986
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS----NPATIMTDPDLAD-A-TYTE-P-ITPEVVAKIIEK 80 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs----NpaTi~TD~~~aD-~-vY~e-P-lt~e~v~~Ii~~ 80 (1162)
||||.|+.. +-|++.|+.|.+.|++|+.+.. .......-..+.+ . .+++ - ...+.+.+++..
T Consensus 2 kvLVTGg~G----------FIGs~l~~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSG----------YIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD 71 (338)
T ss_pred EEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 199989876----------7999999999978498999988988737678888861478875998327998999999986
Q ss_pred HCCCEEEECCCCCHH
Q ss_conf 289889975887026
Q gi|254780439|r 81 ERPDAILPTTGGQTA 95 (1162)
Q Consensus 81 E~pDaIlp~~GGqta 95 (1162)
.+||.|+-- .++.+
T Consensus 72 ~~~d~V~Hl-Aa~~~ 85 (338)
T PRK10675 72 HAIDTVIHF-AGLKA 85 (338)
T ss_pred CCCCEEEEC-CCCCC
T ss_conf 599999989-86545
No 268
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.35 E-value=1.5 Score=22.24 Aligned_cols=103 Identities=22% Similarity=0.331 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 77418997276302014766531899999999965980699606865211232458637984167889999998748567
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
++++++|+++|+. - .-|+.|+..|++.|+.+-+||. - ...|+..|.+.++++.-+.
T Consensus 452 ~G~dv~IiatGs~-------v-~~Al~Aa~~L~~~Gi~~~VVs~--~------------~ikPlD~e~l~~~~~~~~~-- 507 (576)
T PRK05444 452 EGSDVAILAFGTM-------L-AEALEAAERLAAEGISATVVDA--R------------FVKPLDEELLLELAAKHEL-- 507 (576)
T ss_pred CCCCEEEEECCHH-------H-HHHHHHHHHHHHCCCCEEEEEC--C------------CCCCCCHHHHHHHHHHCCE--
T ss_conf 2897899953879-------9-9999999999856998799955--8------------7788799999999954897--
Q ss_pred CCCEEEE-----ECCCHHHHHHHHHHHHCCC------EEEECCCCHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 8227998-----4451246689888887598------386127520331028678999888709866
Q gi|254780439|r 697 ELVGIIV-----QFGGQTPLKLSKILEKNQI------PILGTQPDSIDLAEDRDRFQKLLMELDLNQ 752 (1162)
Q Consensus 697 ~~~~vi~-----q~gGqt~~~la~~L~~~gv------~ilGts~~~Id~aEDR~~F~~ll~~l~i~~ 752 (1162)
+++ -.|| .+..++..|.+.|. .-+|-+ |..-+-..-.++++..|+..
T Consensus 508 ----ivtvEeh~~~GG-lGs~v~e~l~~~g~~~~~~~~~iGi~----D~F~~sG~~~~L~~~~Gl~~ 565 (576)
T PRK05444 508 ----LVTVEENAIMGG-FGSAVLEFLAEHGLLKPVKVLNLGLP----DEFIDHGSREELLAELGLDA 565 (576)
T ss_pred ----EEEEECCCCCCC-HHHHHHHHHHHCCCCCCCCEEEEEEC----CCCCCCCCHHHHHHHHCCCH
T ss_conf ----999938975765-89999999997599779746999848----83668899999999969399
No 269
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=89.29 E-value=1.5 Score=22.21 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEE--EEECCCCCCCCCCCCCCEEEE-EECCHHHHHHHHHHHCC
Q ss_conf 41899727630201476653189999999996598069--960686521123245863798-41678899999987485
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETI--MINCNPETVSTDYDIADRLYF-ESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tI--mIN~NPETVSTDyd~sDrLYF-Eplt~E~V~~I~~~E~p 694 (1162)
+-++.|=-||. .|.+-.|..|..-+... .-|.++-..|||-...|-+|= |.--.+.|.+++++-+|
T Consensus 31 ~D~~hlvHGP~----------gCa~~sw~~r~~~~~~~~~~~~~~~~~~sTdl~E~DvVfGGekKL~~aI~ea~~~~~P 99 (421)
T cd01976 31 KDMVHISHGPV----------GCGQYSWATRRNYYRGETGVDNFGTMQFTTDFQEKDIVFGGDKKLAKAIDEAYELFPL 99 (421)
T ss_pred CCEEEEECCCC----------CHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEECHHHHHHHHHHHHHHHCCC
T ss_conf 55799732731----------0132344322534568764311122212457985641336799999999999985797
No 270
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.29 E-value=0.69 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.465 Sum_probs=27.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999976775420505466688899999999879789997487
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
.|+|+|+||. |.-+..+|...|++|++|...
T Consensus 5 DV~IvGaG~v-----------Gl~lAl~La~~G~~V~iiE~~ 35 (384)
T PRK08849 5 DIAVVGGGMV-----------GAATAIGFAKQGRSVAVIEGF 35 (384)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECC
T ss_conf 9999992499-----------999999999579959999689
No 271
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=89.28 E-value=0.66 Score=24.99 Aligned_cols=138 Identities=17% Similarity=0.285 Sum_probs=71.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE--EEEEEECCCHHHCCCCCCCCCCCCCCCEEE---EEEECCHHHHHHHH
Q ss_conf 9999999859721002466667777666873--899720388344599986707756310137---77419999999999
Q gi|254780439|r 946 AKVAARIIAGESLDASIAAYGKRPDLSQIKH--FAVKESVFPFNKFPGVDILLGPEMRSTGEV---IGIDQDFPLAFAKS 1020 (1162)
Q Consensus 946 ~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~--~aVK~pvFsF~k~~g~D~~LGpEMkSTGEV---mgig~~~~eA~~Ka 1020 (1162)
.++-.+|-.|..|++-.+|.=-..+ -.+.- +.++.-+-|| |||- ..+.-+++++++++
T Consensus 793 R~lLa~~v~G~dlsneaFPfM~~~e-g~~~GGq~~aRlfRiSF----------------sGElayEv~vpA~yG~~vw~~ 855 (1026)
T TIGR01372 793 RDLLAELVDGLDLSNEAFPFMSIKE-GSLAGGQVPARLFRISF----------------SGELAYEVNVPADYGEAVWEA 855 (1026)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEE-EEEECCCEEEEEEEEEE----------------ECCEEEEEECCHHHHHHHHHH
T ss_conf 8998853588535612277451563-13536820278998774----------------054015750450457899999
Q ss_pred HHHCC--CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEE--EHHHHHHHHHCCCE-------EE-EEECCCCCCC
Q ss_conf 99838--8798872599996441289999999999988989999--38889999987981-------56-9750568781
Q gi|254780439|r 1021 QLGIG--VDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMA--TEGTARFLESHGLE-------TQ-KINKVLEGRP 1088 (1162)
Q Consensus 1021 ~~a~g--~~lP~~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~A--T~GTa~~L~~~Gi~-------~~-~v~k~~e~~~ 1088 (1162)
++.+| |.|-.||+ |.+-+. =.|.||.|.. |.||-.- .+.|.. .. -|.|.+=.|+
T Consensus 856 L~~AG~~fg~~pYGt-----------EalhVL--RaEKGfiivG~dtDGTvtP-~Dlg~~w~vsk~K~dsFvG~R~~~Re 921 (1026)
T TIGR01372 856 LMEAGQPFGITPYGT-----------EALHVL--RAEKGFIIVGQDTDGTVTP-ADLGLGWAVSKKKKDSFVGRRGLARE 921 (1026)
T ss_pred HHHHCCCCCCEEECH-----------HHHHHH--HHHCCCEEECCCCCCCHHH-HHCCCCCCCCCCCCCCCEEEECCCCH
T ss_conf 998442468621042-----------243266--2115637842588853107-55378875446689743153125771
Q ss_pred CHHHHHHCCCEEEEEECCCC-CCCCCCHHH
Q ss_conf 07889867985499967899-852311089
Q gi|254780439|r 1089 HIEDAISNRQVHLVINTTEG-KKAIEDSKS 1117 (1162)
Q Consensus 1089 ~i~d~i~~~~i~lVINt~~~-~~~~~dg~~ 1117 (1162)
|+++.+.=+||==+|.. ....+.|-+
T Consensus 922 ---dl~~~dR~~LVGl~p~D~~~~L~~GAh 948 (1026)
T TIGR01372 922 ---DLVAEDRKQLVGLLPLDPQRRLEEGAH 948 (1026)
T ss_pred ---HHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf ---233258844345774788863754211
No 272
>PRK05370 argininosuccinate synthase; Validated
Probab=89.16 E-value=1.5 Score=22.15 Aligned_cols=77 Identities=21% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE-CCCC---------CCCCEEECCCCHHHHHH
Q ss_conf 5699997677542050546668889999999987978999748765010-7845---------13100433799999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM-TDPD---------LADATYTEPITPEVVAK 76 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~-TD~~---------~aD~vY~ePlt~e~v~~ 76 (1162)
=|||.+.=||.. | ++=+++=|+|.|++||.+--|---.. .|.+ =|.++|++-+.-|++.+
T Consensus 11 gkKVvLAYSGGL--------D--TSv~l~wL~e~g~eVia~taDvGQ~de~d~~~i~~kA~~~GA~k~~v~D~reefv~~ 80 (447)
T PRK05370 11 GQRVGIAFSGGL--------D--TSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAE 80 (447)
T ss_pred CCEEEEEECCCC--------H--HHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 888999958982--------7--999999998759879999997999861338999999998299789997179999999
Q ss_pred HHHHHCCCEEEECCCCC
Q ss_conf 99862898899758870
Q gi|254780439|r 77 IIEKERPDAILPTTGGQ 93 (1162)
Q Consensus 77 Ii~~E~pDaIlp~~GGq 93 (1162)
.|..=+..|+.-..||.
T Consensus 81 ~i~ai~a~A~y~~~~g~ 97 (447)
T PRK05370 81 GIAAIQCGAFHISTGGV 97 (447)
T ss_pred HHHHHHHCCHHHHCCCC
T ss_conf 99999736233302576
No 273
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=89.14 E-value=1.5 Score=22.13 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=82.5
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCC--CC------------EEE-CCCCCCCCE--EEC-
Q ss_conf 699997677542050546668889999999987--9789997487--65------------010-784513100--433-
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEE--GYRIILVNSN--PA------------TIM-TDPDLADAT--YTE- 67 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~--Gi~vVlVNsN--pa------------Ti~-TD~~~aD~v--Y~e- 67 (1162)
|+|.|+||-.- | |+|++..+++. .++++.+-+| .. -|- .|....+.+ .+.
T Consensus 2 k~i~IlGsTGS-I---------G~~tL~Vi~~~~~~f~v~~lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~~~~~~~~ 71 (379)
T PRK05447 2 KRITILGSTGS-I---------GTQTLDVIRRHPDRFRVVALSAGSNVELLAEQIREFRPKYVVVADEAAAKELKAALAG 71 (379)
T ss_pred CEEEEECCCCH-H---------HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCC
T ss_conf 78999856958-8---------8999999995868758999992897999999999949999999288999999875588
Q ss_pred --CCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCC
Q ss_conf --799999999998628988997588702688889988759628828757149989998605889999999987898886
Q gi|254780439|r 68 --PITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPK 145 (1162)
Q Consensus 68 --Plt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~ 145 (1162)
--..+.+.++++..++|-++-+.-|--||..+....+.|. +++=++.|+|-.++ .++.+.+++.+-...|
T Consensus 72 ~~~~g~~~l~~~~~~~~~D~vi~aisG~~GL~pt~~ai~~gk------~laLANKEsiV~~G--~li~~~~k~~~~~IiP 143 (379)
T PRK05447 72 KVLAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIKAGK------RIALANKESLVCAG--ELVMDAAKKSGAQILP 143 (379)
T ss_pred CEEECHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCC------EEEEECCCHHEECH--HHHHHHHHHCCCEEEE
T ss_conf 288688999999736789999981343645799999997399------38984340310247--9999999863986864
No 274
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.12 E-value=0.68 Score=24.87 Aligned_cols=34 Identities=38% Similarity=0.743 Sum_probs=29.7
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 999976775420505466688899999999879789997487650
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPAT 53 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaT 53 (1162)
-|+|+|+||. |.-+..+|...|+++++|..+|..
T Consensus 19 DV~IVGaGp~-----------Gl~lAl~La~~Gi~v~viE~~~~~ 52 (413)
T PRK07364 19 DVVIVGGGIV-----------GLTLAAALKDSGLRIALIEAQPAE 52 (413)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9899992799-----------999999998689988999179976
No 275
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.08 E-value=1.3 Score=22.77 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=76.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCC------EEE-----CCCCHHHHHHH
Q ss_conf 9999767754205054666888999999998797899974876501078451310------043-----37999999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADA------TYT-----EPITPEVVAKI 77 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~------vY~-----ePlt~e~v~~I 77 (1162)
||||+|+|.+ |+...+-|--.|+..+-| +|.|.-+. ..| .--..+...+-
T Consensus 1 KVlvvGaGgl-----------Gce~~k~La~~Gvg~i~i--------iD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~ 61 (234)
T cd01484 1 KVLLVGAGGI-----------GCELLKNLALMGFGQIHV--------IDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61 (234)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEE--------ECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHH
T ss_conf 9899948887-----------999999999839986999--------759900567701302446442688229999999
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9862898899758870268888998875962882875714998999860588999999998789888620002
Q gi|254780439|r 78 IEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
+++-+|+--+..+-+...- ........++++++-+- +.|..+-|....+.|-..+.|...+.+.-
T Consensus 62 l~~~Np~~~I~~~~~~v~~---e~~~~~~f~~~~DvVi~-----alDN~~aR~~vN~~c~~~~~PLIegGt~G 126 (234)
T cd01484 62 VNDRNPNCKVVPYQNKVGP---EQDFNDTFFEQFHIIVN-----ALDNIIARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred HHHHCCCCEEEEEECCCCC---CCCCCHHHHHHCCEEEE-----CCCCHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 9987899779998055686---21057988852999998-----85788899999999998099859720246
No 276
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=89.03 E-value=1.2 Score=22.97 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEECC----CHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 998445----124668988888759838612752033102867899988870986
Q gi|254780439|r 701 IIVQFG----GQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLN 751 (1162)
Q Consensus 701 vi~q~g----Gqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~ 751 (1162)
|++..| |+.++++++ ..|.++++|... + ++ .++++++|+.
T Consensus 108 VlI~gg~G~vG~~aiqlak---~~Ga~Vi~t~~s-----~--~k-~~~~~~lG~~ 151 (288)
T smart00829 108 VLIHAAAGGVGQAAIQLAQ---HLGAEVFATAGS-----P--EK-RDFLRELGIP 151 (288)
T ss_pred EEEECCCCHHHHHHHHHHH---HCCCCEEEEECC-----H--HH-HHHHHHCCCC
T ss_conf 9997898677799999999---739830034088-----8--99-9999976999
No 277
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.67 E-value=1 Score=23.49 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 23567774189972763020147665318999999999659806996068
Q gi|254780439|r 612 EDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCN 661 (1162)
Q Consensus 612 e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~N 661 (1162)
+..+.++|||-|+|||| ..--|+..|..+||++.+---.
T Consensus 433 ~~~~~~GkKVAVIGsGP-----------AGLsaA~~La~~G~~VtVFE~~ 471 (760)
T PRK12778 433 EVAEKNGIKVAVIGSGP-----------AGLSFAGDMAKYGYDVTVFEAL 471 (760)
T ss_pred CCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEECC
T ss_conf 77666899899989778-----------9999999999779906998058
No 278
>PTZ00318 NADH dehydrogenase; Provisional
Probab=88.65 E-value=0.64 Score=25.09 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=15.7
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 74189972763020147665318999999999659806996068
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCN 661 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~N 661 (1162)
|++|+|||+| |..+.+++.|++..++.++|+-|
T Consensus 10 KprVVIlGgG-----------faGl~~ak~L~~~~~~VtLVdp~ 42 (514)
T PTZ00318 10 KPNVVVVGTG-----------WAGCYFARHLNPKLANLHVLSTR 42 (514)
T ss_pred CCEEEEECCC-----------HHHHHHHHHHCCCCCCEEEECCC
T ss_conf 8858999976-----------99999999738689828999999
No 279
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.50 E-value=1.2 Score=22.99 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 67774189972763020147665318999999999659806996068652
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPET 664 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPET 664 (1162)
+..+|||.|+|||| ..--|++.|+..||++.+.--+|+-
T Consensus 134 ~~tgkkVAVIGaGP-----------AGLsaA~~La~~G~~VtVfE~~~~~ 172 (560)
T PRK12771 134 PDTGKRVAVIGGGP-----------AGLSAAYQLRRLGHAVTIFEAGPKL 172 (560)
T ss_pred CCCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 77899899989778-----------9999999999769858996767888
No 280
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=88.49 E-value=0.62 Score=25.19 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+|||+|++ |.....+|++.|.+|-+|...|
T Consensus 1 rv~iiGgG~i-----------g~E~A~~l~~~G~~Vtiie~~~ 32 (82)
T pfam00070 1 RVVVVGGGYI-----------GLEFASALAKLGSKVTVVERRD 32 (82)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999998899-----------9999999986392789981257
No 281
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.43 E-value=0.78 Score=24.39 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=31.3
Q ss_pred HHCCCCHHH-HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 760798248-99999999738978899877188989999999999
Q gi|254780439|r 482 AISIPCPDR-LRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIV 525 (1162)
Q Consensus 482 ~L~~p~~~R-l~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv 525 (1162)
++.-|...- |-.+.-|++.|.+++++.+.-.++|=+-+-|++=+
T Consensus 404 ~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~A~ 448 (458)
T PRK06912 404 SIIGPHATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 998999999999999999887989999416768987599999999
No 282
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=88.43 E-value=0.49 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCC
Q ss_conf 999976775420505466688899999999879--789997487
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSN 50 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsN 50 (1162)
||+|||+||- |..|...+++.+ .+++++.-.
T Consensus 2 kvVIIG~G~A-----------G~saA~~l~~~~~~~~I~v~e~~ 34 (443)
T PRK09564 2 KIIIIGGTAA-----------GTSAAAKAKRLNKELEIVVYEKT 34 (443)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCCEEEEECC
T ss_conf 6999996099-----------99999999814939999999488
No 283
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.36 E-value=0.74 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.399 Sum_probs=33.8
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 55699997677542050546668889999999987978999748765010
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
.||||-|||+|-+ |.+....+-..|++|+|++.||+...
T Consensus 1 sI~kV~ViGaG~m-----------G~~IA~~~a~~G~~V~l~D~~~~~~~ 39 (284)
T PRK07819 1 AIQRVGVVGAGQM-----------GSGIAEVCARAGVDVLVFETTEEAAT 39 (284)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 9167999897789-----------99999999957990899979889999
No 284
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.35 E-value=1.7 Score=21.75 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=17.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 699997677542050546668889999999987978999748
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
|.|||-|++- =| |-..++.|-+.|.+|++.--
T Consensus 5 K~vlITGass-GI---------G~alA~~la~~G~~V~~~~R 36 (277)
T PRK05993 5 RSILITGCSS-GI---------GAYCAHALQKRGWRVFATCR 36 (277)
T ss_pred CEEEEECCCC-HH---------HHHHHHHHHHCCCEEEEEEC
T ss_conf 6899925686-99---------99999999987999999979
No 285
>PRK08774 consensus
Probab=88.32 E-value=0.94 Score=23.75 Aligned_cols=38 Identities=37% Similarity=0.635 Sum_probs=32.0
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9776655699997677542050546668889999999987978999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|.+.-| |+|+|+||. |.-..-+|...|++|.+|..+|.
T Consensus 1 M~~~~D---VlIVGgGpv-----------Gl~lA~~La~~G~~v~liE~~~~ 38 (402)
T PRK08774 1 MTHPHD---VLIVGGGLV-----------GSSLAIALDRIGLDVGLVEATPA 38 (402)
T ss_pred CCCCCC---EEEECCCHH-----------HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 989987---899991699-----------99999999668997899937998
No 286
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=88.24 E-value=1.2 Score=22.84 Aligned_cols=194 Identities=21% Similarity=0.227 Sum_probs=99.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-ECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999976775420505466688899999999879789997487650107845131004-3379999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-TEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
||||+||+.- .|..=.+.|-+.|-.++.++++ |-...+-+.- +-=-.+|.+.++++..+||+|+
T Consensus 1 rilitGa~GQ----------lG~~L~~~l~~~g~~~~~~~~~-----~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vv 65 (317)
T TIGR01214 1 RILITGANGQ----------LGRELVQQLSKPGRVVVALTRS-----TRLKLAARWSQLDLTDPEALEELLRAIRPDAVV 65 (317)
T ss_pred CEEEECCCCH----------HHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9788738756----------7999999707888278643687-----776113365440622468899999852875376
Q ss_pred ECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75887026888899887596288287571499899986058899999999878988862000234433333233333334
Q gi|254780439|r 88 PTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERE 167 (1162)
Q Consensus 88 p~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~ 167 (1162)
=+ .==|+-..|+.=.+ .-|-|..+|+ ....+.|.++|.... --|||+.=+.. +..
T Consensus 66 nt-AAYT~VD~AE~~~~----~AyavNa~A~-----------~~lA~~A~~~Ga~~v----h~STDYVFDGd-fGG---- 120 (317)
T TIGR01214 66 NT-AAYTDVDGAESDPE----KAYAVNALAP-----------QNLARAAARVGARLV----HISTDYVFDGD-FGG---- 120 (317)
T ss_pred EC-CHHCCCCCCCCCHH----HHHHHHHHHH-----------HHHHHHHHHCCCEEE----EEEECEEECCC-CCC----
T ss_conf 23-01101000037777----8765740789-----------999999986691599----98634234475-578----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCEEEEECCCCCCCC---CCCCCCHHHHH
Q ss_conf 4444444333322211111123344444445544489999999998719--969994132678664---51116999999
Q gi|254780439|r 168 NLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIG--LPLIIRPSFTLGGTG---GGIAYNRSEFL 242 (1162)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iG--yPvivRps~~lGG~G---~~iv~n~eeL~ 242 (1162)
-... -|.....-|+.- -+-.+-..-=..+.+-.+ -=+|||-|-.=|+.| +-++.++=+|-
T Consensus 121 -~~~~---------PY~e~D~~nPln-----vYG~SK~~GE~a~~~~~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLa 185 (317)
T TIGR01214 121 -EGKR---------PYREDDETNPLN-----VYGQSKLAGEQAVRAAGPDENALIVRTSWLYGAGGGSGRNFVKTMLRLA 185 (317)
T ss_pred -CCCC---------CCCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf -8866---------887646879843-----1211156899999983799857889852134489988421799999853
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 9999899857998279866449978999999972899
Q gi|254780439|r 243 EIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKG 279 (1162)
Q Consensus 243 ~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~g 279 (1162)
|-..=|+.|+-|+.|
T Consensus 186 ----------------------G~~~~~l~vV~DQ~G 200 (317)
T TIGR01214 186 ----------------------GKEREELRVVDDQIG 200 (317)
T ss_pred ----------------------CCCCCCEEEEECCCC
T ss_conf ----------------------789984037855768
No 287
>PRK04965 nitric oxide reductase; Provisional
Probab=88.21 E-value=0.97 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=12.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69999767754205054666888999999998797
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY 42 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi 42 (1162)
++|+|||+|.- |.++++.||+.+.
T Consensus 3 ~~IVIIG~G~A-----------G~~aa~~lR~~d~ 26 (378)
T PRK04965 3 NGIVIIGSGFA-----------ARQLVKNIRKQDA 26 (378)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHCCCC
T ss_conf 99999988299-----------9999999971194
No 288
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.17 E-value=1.7 Score=21.67 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=44.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCC-CCCEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501078451-31004337999999999986289889
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL-ADATYTEPITPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~-aD~vY~ePlt~e~v~~Ii~~E~pDaI 86 (1162)
|||+|+|-|-. |.-+++.|++.|+++...+.+......+.-. .-..++.....+.+ ...|.|
T Consensus 7 k~v~V~GlG~s-----------G~s~~~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~------~~~d~v 69 (438)
T PRK03806 7 KNVVIIGLGLT-----------GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWL------LAADLI 69 (438)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHH------CCCCEE
T ss_conf 98999945788-----------8999999997899699998999900578864588466577796680------679999
Q ss_pred EECCC
Q ss_conf 97588
Q gi|254780439|r 87 LPTTG 91 (1162)
Q Consensus 87 lp~~G 91 (1162)
+.+=|
T Consensus 70 V~SPG 74 (438)
T PRK03806 70 VASPG 74 (438)
T ss_pred EECCC
T ss_conf 98997
No 289
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=87.99 E-value=1.1 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=29.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 69999767754205054666888999999998797899974876
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
..|+|+|+||. |.-+..+|...|++|.++.+++
T Consensus 2 ~DV~IvGaG~v-----------Gl~lAl~La~~g~~v~lie~~~ 34 (374)
T PRK06617 2 SNTVILGCGLS-----------GMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 62999996699-----------9999999985799699997899
No 290
>PRK06185 hypothetical protein; Provisional
Probab=87.83 E-value=1 Score=23.46 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9776655699997677542050546668889999999987978999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|++++| |+|+|+||- |.-+...|...|++|+++-.+|.
T Consensus 3 ~~~~tD---V~IVGaGpa-----------GL~lAl~Lar~Gi~V~VlEk~~~ 40 (409)
T PRK06185 3 MVETTD---CCIVGGGPA-----------GMMLGLLLARAGVDVTVLEKHAD 40 (409)
T ss_pred CCCCCC---EEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 887899---899991889-----------99999999977999999918999
No 291
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=87.80 E-value=1.8 Score=21.51 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=76.4
Q ss_pred EECCHHHHHHHHHHHCCCCC--CCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 41678899999987485678--2279984451246689888887598386127520331028678999888709866854
Q gi|254780439|r 678 ESLTEEDILEILRVEQQKGE--LVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN 755 (1162)
Q Consensus 678 Eplt~E~V~~I~~~E~p~g~--~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~ 755 (1162)
|||-=+++.+++..=+..-. +..+-..+=|-.=-..|..|.++|++=+=-|.||.| +++|.++-+. +
T Consensus 72 EPLlR~~l~~lv~~~~~~~g~~~~di~lTTNG~~L~~~a~~L~eAGL~rvNvSLDsLd----~~~F~~It~~-------~ 140 (346)
T TIGR02666 72 EPLLRKDLVELVARLAALPGIEIEDIALTTNGLLLERHAKDLKEAGLKRVNVSLDSLD----PERFAKITRR-------G 140 (346)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCC----HHHHHHHHCC-------C
T ss_conf 7441367589999998427854335541005223588999999718880365401488----8999998578-------9
Q ss_pred CCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 2112156655565536971-6751344445654125548999999999752
Q gi|254780439|r 756 GISHSVEHARLIACEIGFP-LLIRPSYVLGGRAMQIVYSENMLQDYLLDTL 805 (1162)
Q Consensus 756 ~~a~s~eea~~~a~~iGyP-VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~ 805 (1162)
+-...+=++++.|.++||+ |=|=- =|+. =-|++|+...++-+.
T Consensus 141 ~~l~~Vl~Gi~aA~~~Gl~~vKlN~-V~~~------G~Nd~Ei~~l~~~~~ 184 (346)
T TIGR02666 141 GRLEQVLAGIDAALEAGLKPVKLNT-VVLR------GVNDDEIVDLAEFAK 184 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEE-EECC------CCCHHHHHHHHHHHH
T ss_conf 9888999999999965998314766-7627------889778999999997
No 292
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=87.76 E-value=0.52 Score=25.82 Aligned_cols=391 Identities=16% Similarity=0.147 Sum_probs=168.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHC---
Q ss_conf 999976775420505466688899999999879---78999748765010784513100433799999999998628---
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG---YRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKER--- 82 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G---i~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~--- 82 (1162)
-++|||+|.- +.-|.=+..|.| -+++||+.=| ==.++-.+=.=| -..+.++.+..+
T Consensus 2 d~~iiG~GaA-----------AfaAai~A~e~GsGqa~v~mv~~G~-----~GGTCVNVGCVP--SK~llraa~~~~~a~ 63 (494)
T TIGR02053 2 DLVIIGSGAA-----------AFAAAIKAAELGSGQAKVAMVERGP-----LGGTCVNVGCVP--SKILLRAAEVAHYAR 63 (494)
T ss_pred EEEEEECCHH-----------HHHHHHHHHHCCCCCEEEEEECCCC-----CCCEEEEECCCH--HHHHHHHHHHHHHHH
T ss_conf 1899827689-----------9999999985488715999963789-----776158523274--589999998876763
Q ss_pred -CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf -988997588702688889988759628828757149989998605889999999987-898886200023443333323
Q gi|254780439|r 83 -PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNI-PLATPKSILANATDIKEHDRK 160 (1162)
Q Consensus 83 -pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~-gip~~~s~~~~~~~~~~~~~~ 160 (1162)
|---.+..+-...+.+..-|+..- .+=-..=+++.-+++++. |+.+.++... -.|
T Consensus 64 ~~~~f~g~~~~~~~v~~~~ll~~~~---------------~~V~eLR~eKY~~vl~~y~~~~~~~G~A~-F~d------- 120 (494)
T TIGR02053 64 KPPFFVGLLAATVEVDFEELLEQKR---------------EVVEELRKEKYEDVLSSYDGVDLVRGRAR-FKD------- 120 (494)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHCCCEEEEEEEEE-ECC-------
T ss_conf 4777777535434423899999988---------------99999877678999851798679986799-847-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------CCCC--CCCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 33333344444444333322211------1111--233444444455444-----8999999999871996999413267
Q gi|254780439|r 161 LHEEERENLKKTLSKEELDAALY------ALEL--KWNLEENDRKHRYIC-----HAMAVAVQALDEIGLPLIIRPSFTL 227 (1162)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~-----~s~~ea~~~a~~iGyPvivRps~~l 227 (1162)
-++.-.+.-|..+. .+.+ +.+..|.+||..+.- -+-+++++. =-.|=|=|=+ .+
T Consensus 121 ---------~~~V~v~~~~GG~~~~~~k~~lIATGa~P~~P~IPGLke~~~~G~ylTs~~~l~~---~~~Pdm~sL~-vI 187 (494)
T TIGR02053 121 ---------PKTVKVDLAEGGREVVGAKRFLIATGARPAVPPIPGLKEADKAGRYLTSEEALEL---DRIPDMESLV-VI 187 (494)
T ss_pred ---------CCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCHHHCCCEECCHHHHCC---CCCCCEEEEE-EE
T ss_conf ---------8789972788850042138668964677887446780045336843213777256---8799704688-88
Q ss_pred CCCC-----------------------CCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCEEEEEEEEEECCCCEEE
Q ss_conf 8664-----------------------51116999999999989985-79982798664499789999999728998899
Q gi|254780439|r 228 GGTG-----------------------GGIAYNRSEFLEIVENGLHA-SPTTEVLIEESVLGWKEYELEMMRDIKGNCIV 283 (1162)
Q Consensus 228 GG~G-----------------------~~iv~n~eeL~~~~~~al~~-s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~ 283 (1162)
||+- .=+-+.+.|.-.++++.|.. -+ |.|-++ .+.+.-.-.||+..-.+.
T Consensus 188 Ggg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~~V~~~l~~eeG---i~~~~~---~r~~~~v~~rngg~~~~~ 261 (494)
T TIGR02053 188 GGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISAAVEEALAEEEG---IEVVTS---ARQVKAVSVRNGGGKIVT 261 (494)
T ss_pred CCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCC---EEEEEC---CEEEEEEEECCCCEEEEE
T ss_conf 65289999999998577614036799864464688899999998414787---799804---403554445279818999
Q ss_pred EEECCCCCCCCCCCCEEEEEC----CC-CCCC-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 963000000100001013433----73-2289-88999999999999987183457646899995589849998504443
Q gi|254780439|r 284 VCSIENLDPMGVHTGDSITVA----PA-LTLT-DKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRV 357 (1162)
Q Consensus 284 v~~~En~dp~GiHtGDSi~va----P~-qTL~-d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~ 357 (1162)
+ .--+. -+.=-.|.+.|| |- ++|+ =+ .+|++ -++.=.|.||-|+
T Consensus 262 ~-e~~~~--~~~~eAd~lLVATGR~PN~~gL~GLe--------------~~GVk-------------~~~~G~I~Vde~l 311 (494)
T TIGR02053 262 V-EKNGG--KAEVEADELLVATGRRPNTDGLNGLE--------------KAGVK-------------LDERGGILVDERL 311 (494)
T ss_pred E-ECCCC--CCEEEHHHHHHHHCCCCCCCCCCCHH--------------HCCCE-------------ECCCCCEEECCCC
T ss_conf 8-55898--74574311255527875666677423--------------45834-------------6688547872620
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHCC-CC----CCCCCCCC--C-CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 1035788876346147677764134-46----10135775--6-777766657767768985442012114776666677
Q gi|254780439|r 358 SRSSALASKATGFPIAKIAAKLAVG-YT----LDELGNDI--T-GGKTPASFEPSIDYIVTKIPRFTFEKFPGSDVTLTT 429 (1162)
Q Consensus 358 sRssalaskatgypia~vaakl~~G-~~----L~ei~~~~--~-~~~~~a~~Ep~ldyv~vK~p~f~f~kf~~~~~~Lgt 429 (1162)
-=| -|=.|.|.-.-.| .. |..+--.. . -.|-.-.-+-.|||-++.--.|.-..+
T Consensus 312 rTs---------np~iYAAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT~P~~--------- 373 (494)
T TIGR02053 312 RTS---------NPGIYAAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFTDPAV--------- 373 (494)
T ss_pred CCC---------CCCEEEEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEECCCCE---------
T ss_conf 358---------77724620223787465235777875058045201017988155402188369768871---------
Q ss_pred CCCCCCHHHHCCCCHHHHHHHHH----HHCCCC----------CCCCCCCCCCCCCCCCC---HHHHH-HHHCCCCHHHH
Q ss_conf 31001002222676899999899----750378----------76766557667664589---89999-97607982489
Q gi|254780439|r 430 SMKSVGEVMAIGRTFAESLQKAL----RGLETG----------LTGLDEIHIPSMESDND---PNALR-SAISIPCPDRL 491 (1162)
Q Consensus 430 ~MkS~GEvm~iGr~f~eA~~KAl----rsle~~----------~~g~~~~~~~~~~~~~~---~~~l~-~~L~~p~~~Rl 491 (1162)
...|-|-.||.-+.+ |++.+. ..||............+ -..|= +-+...=.+=|
T Consensus 374 --------AsVGLtE~ea~~~G~~~~~R~~~~~~VPra~~~r~t~G~iKlva~~~T~K~svkrGkilGv~~vA~~A~e~I 445 (494)
T TIGR02053 374 --------ASVGLTEAEAQKAGIEVDSRTLPLEAVPRARINRETRGFIKLVADPGTGKVSVKRGKILGVQVVAEEAAEVI 445 (494)
T ss_pred --------EECCCCHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHHH
T ss_conf --------213575898985597045666534036889857899614899973787358764142778775231178899
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCH
Q ss_conf 999999973897889987718898
Q gi|254780439|r 492 RTVAQALRLGVSVEETHQSSNIDP 515 (1162)
Q Consensus 492 ~~i~eAlr~G~sv~ei~elT~Id~ 515 (1162)
-.-+-|+|.|+|||+|-+--++=|
T Consensus 446 ~~A~~ai~~GlTVdD~idt~h~fp 469 (494)
T TIGR02053 446 NEAALAIKAGLTVDDLIDTLHPFP 469 (494)
T ss_pred HHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 999999980783778873115456
No 293
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.69 E-value=1.6 Score=21.82 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=26.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCC
Q ss_conf 9999767754205054666888999999998797--899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNp 51 (1162)
||-|||+|-+ |+....+|...|+ +.+|++-|+
T Consensus 1 KI~IIGaG~V-----------G~~~A~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHV-----------GSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9899996989-----------999999998569988799992889
No 294
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=87.68 E-value=0.73 Score=24.61 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=32.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 699997677542050546668889999999987978999748765010
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
.+|+|||+|-- |.||++.++.+|.++..++.|++...
T Consensus 21 a~vvViG~Gv~-----------G~~A~~~A~~lGa~V~v~D~~~~~l~ 57 (150)
T pfam01262 21 AKVVVIGGGVV-----------GLGAAATAKGLGAPVTILDVRPERLE 57 (150)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 77999898789-----------99999999867998999729999999
No 295
>KOG1399 consensus
Probab=87.47 E-value=0.73 Score=24.65 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 5569999767754205054666888999999998797899974
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVN 48 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVN 48 (1162)
..++|.|||+||. |-.+.+.|+++|++++.--
T Consensus 5 ~~~~vaIIGAG~s-----------GL~~ar~l~~~g~~v~vfE 36 (448)
T KOG1399 5 MSKDVAVIGAGPA-----------GLAAARELLREGHEVVVFE 36 (448)
T ss_pred CCCCEEEECCCHH-----------HHHHHHHHHHCCCCCEEEE
T ss_conf 7785489785668-----------8899999987799836997
No 296
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=87.43 E-value=1.9 Score=21.35 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=23.4
Q ss_pred EEEEECCCCCC-----CCHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 56975056878-----1078898----6798549996789985231108999999970997
Q gi|254780439|r 1077 TQKINKVLEGR-----PHIEDAI----SNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIP 1128 (1162)
Q Consensus 1077 ~~~v~k~~e~~-----~~i~d~i----~~~~i~lVINt~~~~~~~~dg~~iRr~Ai~~~ip 1128 (1162)
++.+-|.+|.- .++.+++ ..|++-+||.-............-+...+..+.|
T Consensus 188 ~RELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (275)
T COG0313 188 ARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEGKNKAEAELSLDAEITLLLLQALP 248 (275)
T ss_pred EEECCCCHHHEECCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8733531131341639999998640577654899994786442200057899999985699
No 297
>KOG2495 consensus
Probab=87.31 E-value=1.8 Score=21.59 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE--EECC----------
Q ss_conf 5677741899727630201476653189999999996598069960686521123245863798--4167----------
Q gi|254780439|r 614 KVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYF--ESLT---------- 681 (1162)
Q Consensus 614 ~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYF--Eplt---------- 681 (1162)
....+|+|+||||| |.++..++.|-.--|..++| |-|=|| -||-
T Consensus 51 ~~~kKk~vVVLGsG-----------W~a~S~lk~ldts~YdV~vV-------------SPRnyFlFTPLLpS~~vGTve~ 106 (491)
T KOG2495 51 NGGKKKRVVVLGSG-----------WGAISLLKKLDTSLYDVTVV-------------SPRNYFLFTPLLPSTTVGTVEL 106 (491)
T ss_pred CCCCCCEEEEECCC-----------HHHHHHHHHCCCCCCCEEEE-------------CCCCCEEEEECCCCCCCCCEEE
T ss_conf 78887539998575-----------28899987526643424996-------------4630068731467764462431
Q ss_pred ---HHHHHHHHHHHC
Q ss_conf ---889999998748
Q gi|254780439|r 682 ---EEDILEILRVEQ 693 (1162)
Q Consensus 682 ---~E~V~~I~~~E~ 693 (1162)
.|-|.+|.++-+
T Consensus 107 rSIvEPIr~i~r~k~ 121 (491)
T KOG2495 107 RSIVEPIRAIARKKN 121 (491)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 034556898862257
No 298
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=87.26 E-value=1.9 Score=21.28 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=62.9
Q ss_pred CCCCCCCCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHHH----HHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf 4554448999999999871--9969994132678664511169999999999----899857998279866449978999
Q gi|254780439|r 197 KHRYICHAMAVAVQALDEI--GLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE----NGLHASPTTEVLIEESVLGWKEYE 270 (1162)
Q Consensus 197 ~~~~~~~s~~ea~~~a~~i--GyPvivRps~~lGG~G~~iv~n~eeL~~~~~----~al~~s~~~~vlIeksl~g~kEiE 270 (1162)
-....+.|.++|..++..+ +=||=+||...-||+|-.++.+.+||+..+. ..+... -+.+|+.|....-+-
T Consensus 115 LpG~tvFs~~DAr~Aa~~Ll~~G~VRlK~~~a~gG~GQ~vv~d~~~Le~~L~a~~~~~l~~~---GlVLE~~L~~~~TyS 191 (355)
T pfam11379 115 LPGYTVFSLEDARDAAARLLKGGPVRLKPPRACGGRGQQVVADADALDAALAALDDRELAAH---GLVLEEDLDQPTTYS 191 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHC---CEEEECCCCCCCEEE
T ss_conf 38732226788999999985379725505622378885574389999999872798889866---868740257772255
Q ss_pred EEEEEECCCCEEEEEECCCCCCCC----CCCCEEEEECC-------CCCCCHHHHHHHHHH
Q ss_conf 999972899889996300000010----00010134337-------322898899999999
Q gi|254780439|r 271 LEMMRDIKGNCIVVCSIENLDPMG----VHTGDSITVAP-------ALTLTDKEYQLMRNA 320 (1162)
Q Consensus 271 ~eVirD~~gn~i~v~~~En~dp~G----iHtGDSi~vaP-------~qTL~d~~~q~LR~~ 320 (1162)
+--+|= .|-.+..|...++-+=. |--|-..+|.. .+.|++..++.++.+
T Consensus 192 VGqv~v-~g~~~SY~GtQ~lT~dn~G~~VYGGSdL~vvRGg~~aLl~l~lp~~~r~AV~qA 251 (355)
T pfam11379 192 VGQVRV-AGLLASYYGTQYLTRDNHGEEVYGGSDLVVVRGGYDALLALDLPPLVRLAVEQA 251 (355)
T ss_pred EEEEEE-CCEEEEEEEEEEECCCCCCCEEECCCEEEEEECCHHHHHCCCCCHHHHHHHHHH
T ss_conf 555999-889988852654025899887355743799728799996178987999999999
No 299
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=87.24 E-value=1.9 Score=21.27 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=47.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCEEE--C-CCC-CCCCEEEC--C-CCHHHHHHHHH
Q ss_conf 699997677542050546668889999999987978-999748765010--7-845-13100433--7-99999999998
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR-IILVNSNPATIM--T-DPD-LADATYTE--P-ITPEVVAKIIE 79 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~-vVlVNsNpaTi~--T-D~~-~aD~vY~e--P-lt~e~v~~Ii~ 79 (1162)
|||||.|+..- -|++.++.|.++|.+ ++.+++...+-. . .+. ..+++-+. - ...+.+.++++
T Consensus 2 KkILVTGg~GF----------IGs~Lv~~Ll~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 71 (355)
T PRK10217 2 RKILITGGAGF----------IGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFT 71 (355)
T ss_pred CEEEECCCCCH----------HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 96999378757----------99999999997699889998289876525444454127871699800588999999998
Q ss_pred HHCCCEEEECCCCCHHH
Q ss_conf 62898899758870268
Q gi|254780439|r 80 KERPDAILPTTGGQTAL 96 (1162)
Q Consensus 80 ~E~pDaIlp~~GGqtal 96 (1162)
..+||.|+- +.+++..
T Consensus 72 ~~~pD~ViH-lAa~~~~ 87 (355)
T PRK10217 72 EYQPDCVMH-LAAESHV 87 (355)
T ss_pred HCCCCEEEE-ECCCCCH
T ss_conf 619988999-4242211
No 300
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=87.24 E-value=1.4 Score=22.46 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 5699997677542050546668889999999987978999748765
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
...|+|+|+||- |.-+--+|+..|++|++|-..|.
T Consensus 2 ~~dV~IvGaG~a-----------Gl~lA~~L~~~G~~V~liE~~~~ 36 (387)
T COG0654 2 MLDVAIVGAGPA-----------GLALALALARAGLDVTLLERAPR 36 (387)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 854999997899-----------99999999828996899907761
No 301
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=87.14 E-value=1.6 Score=21.93 Aligned_cols=58 Identities=19% Similarity=0.467 Sum_probs=41.3
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEE-CCCCHHHHHHHHHHHCC
Q ss_conf 69999767754205054666888999999998797899974876501078451310043-37999999999986289
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYT-EPITPEVVAKIIEKERP 83 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~-ePlt~e~v~~Ii~~E~p 83 (1162)
--|.|+|+||- |+.|.+.|++.|++|+++-..+ ....+..- ..+++..+.+++...++
T Consensus 4 ~DVvIVGaGPA-----------Gs~aA~~la~~G~~VlvlEk~~-------~~G~k~~~~~~~~~~~l~~l~~~~~~ 62 (396)
T COG0644 4 YDVVIVGAGPA-----------GSSAARRLAKAGLDVLVLEKGS-------EPGAKPCCGGGLSPRALEELIPDFDE 62 (396)
T ss_pred EEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCC-------CCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf 88999897889-----------9999999985799299996578-------89998767666787788774555213
No 302
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=87.11 E-value=0.29 Score=27.77 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 489999999998719969994132
Q gi|254780439|r 202 CHAMAVAVQALDEIGLPLIIRPSF 225 (1162)
Q Consensus 202 ~~s~~ea~~~a~~iGyPvivRps~ 225 (1162)
.+++..|.+.|++.|-|+++-|.-
T Consensus 70 ~~~m~~a~~~A~~~~~PvVLDPVG 93 (262)
T PRK09355 70 IEAMLAAGKIANEAGKPVVLDPVG 93 (262)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 999999999999739988974744
No 303
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=87.04 E-value=2 Score=21.19 Aligned_cols=100 Identities=25% Similarity=0.298 Sum_probs=56.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
||||+|+..- .|..-.++|.+.| +++.+.-+. +|. ...--..+.|.+.+++.+||.|+=
T Consensus 2 kILvtGa~Gq----------LG~~l~~~l~~~~-~~~~~~~~~----~~~------~~Dit~~~~v~~~~~~~~Pd~IIN 60 (299)
T PRK09987 2 NILLFGKTGQ----------VGWELQRALAPLG-NLIALDVHS----TDY------CGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred EEEEECCCCH----------HHHHHHHHHHHCC-CEEEEECCC----CCC------CCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 7999899997----------8999999866509-889985263----001------367899999999999659999998
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCC
Q ss_conf 588702688889988759628828757149989998605889999999987898886
Q gi|254780439|r 89 TTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPK 145 (1162)
Q Consensus 89 ~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~ 145 (1162)
.- +-|....|+.=.+. -+- + .+.--....+.|.+.|++...
T Consensus 61 ~a-A~T~VD~~E~~~~~----a~~----------v-N~~~~~~La~~~~~~~~~lIh 101 (299)
T PRK09987 61 AA-AHTAVDKAESEPEF----AQL----------L-NATSVEAIAKAANEVGAWVVH 101 (299)
T ss_pred CH-HHCCHHHHHCCHHH----HHH----------H-HHHHHHHHHHHHHHCCCEEEE
T ss_conf 83-10163665248999----999----------8-889999999999973985999
No 304
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=87.03 E-value=2 Score=21.19 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=50.1
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHH-HHHHCCCCEEEEECCC-CCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 774189972763020147665318999999-9996598069960686-52112324586379841678899999987485
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASF-SLKEAGFETIMINCNP-ETVSTDYDIADRLYFESLTEEDILEILRVEQQ 694 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~-aLr~~G~~tImIN~NP-ETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p 694 (1162)
..|++.+|+. --.|-.....+.+ .+++.|.+.+.-..-| .+ ||| ...+.=++..+|
T Consensus 133 g~k~vaii~~-------d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~--~Df-------------s~~l~kik~a~p 190 (359)
T TIGR03407 133 GAKRFFLLGS-------DYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGH--TDF-------------QTIINKIKAFKP 190 (359)
T ss_pred CCCEEEEEEC-------CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCH-------------HHHHHHHHHCCC
T ss_conf 9987999945-------873058999999999997599737788257987--558-------------999999997699
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 67822799844512466898888875983
Q gi|254780439|r 695 KGELVGIIVQFGGQTPLKLSKILEKNQIP 723 (1162)
Q Consensus 695 ~g~~~~vi~q~gGqt~~~la~~L~~~gv~ 723 (1162)
+. |+....|....++.+.+.+.|+.
T Consensus 191 D~----v~~~~~~~~~~~~~kq~~~~G~~ 215 (359)
T TIGR03407 191 DV----VFNTLNGDSNVAFFKQLKNAGIT 215 (359)
T ss_pred CE----EEEECCCCCHHHHHHHHHHHCCC
T ss_conf 99----99937462057999999982899
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.98 E-value=1.8 Score=21.50 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7774189972763020147665318999999999659806996
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI 658 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI 658 (1162)
..+|||-|+||||= .--|+..|+.+||++.+-
T Consensus 325 ~tGKkVAIIGsGPA-----------GLsaA~~Lar~G~~VTVF 356 (654)
T PRK12769 325 KSDKRVAIIGAGPA-----------GLACADVLTRNGVAVTVY 356 (654)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEE
T ss_conf 78998999897789-----------999999999769757995
No 306
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.87 E-value=2 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHCCCCHH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 76079824-89999999973897889987718898999999999
Q gi|254780439|r 482 AISIPCPD-RLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMI 524 (1162)
Q Consensus 482 ~L~~p~~~-Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~i 524 (1162)
++.-|... -|-.+.-|++.|.+++++.+....+|=+-+-|++-
T Consensus 412 ~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~i~~a 455 (466)
T PRK06115 412 HLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQA 455 (466)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99899999999999999988797999952677898779999999
No 307
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=86.87 E-value=2 Score=21.12 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 69999767754205054666888999999998797899974876
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
|+|.|+|-|.| |.+..+-++-.|.+++..++++
T Consensus 37 k~vgIiG~G~I-----------G~~va~~l~~fg~~V~~~d~~~ 69 (176)
T pfam02826 37 KTVGIIGLGRI-----------GRAVARRLKAFGMKVIAYDRYP 69 (176)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHHCCCEEEECCCC
T ss_conf 99999896999-----------9999999998398125437987
No 308
>pfam06973 DUF1297 Domain of unknown function (DUF1297). This family represents the C-terminus (approximately 200 residues) of a number of archaeal proteins of unknown function. One member is annotated as being a possible carboligase enzyme.
Probab=86.85 E-value=2 Score=21.20 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=13.6
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 83457646899995589849998504443
Q gi|254780439|r 329 GVESGGANVQFAVNPKNGKMVVIEMNPRV 357 (1162)
Q Consensus 329 gi~vG~~nVQFAv~p~~~~~yvIEvNpR~ 357 (1162)
|+ +|....|.+++ ++.+++|-|+.+|.
T Consensus 116 G~-iGPFcLq~ivt-~dle~vvFevS~RI 142 (188)
T pfam06973 116 GI-IGPFCLQSIVT-DDLEFVVFEVSARI 142 (188)
T ss_pred CC-CCCCEEEEEEC-CCCEEEEEEEECCC
T ss_conf 86-13444667887-98619999985300
No 309
>PRK08508 biotin synthase; Provisional
Probab=86.81 E-value=2 Score=21.10 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=81.7
Q ss_pred HHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf 86398479986214324436658558972067766655322356777418997276302014766531899999999965
Q gi|254780439|r 572 HQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEA 651 (1162)
Q Consensus 572 ~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~ 651 (1162)
++.|+..--...+|+-.-|+.-.+-. ||+.-- +....-++.=+=++||-+ ||-| |=+---+.-+++||++
T Consensus 109 keAGvdrY~hNlETs~~~y~~I~tTh--ty~dRl------~tl~~~k~aGl~vCsGgI-iGlG-Et~edrve~a~~L~eL 178 (279)
T PRK08508 109 KKAGIFSYNHNLETSKEFFPKICTTH--SWEERF------QTCLNAKEAGLGLCSGGI-FGLG-ESWEDRISMLKSLASL 178 (279)
T ss_pred HHCCCCEECCCCCCCHHHHCCCCCCC--CHHHHH------HHHHHHHHCCCEEECCCE-EECC-CCHHHHHHHHHHHHHC
T ss_conf 98397123076676768757658998--889999------999999981994867854-4789-9989999999999838
Q ss_pred CCCEEEEE---CCCCCCCCCCCCCCEEEEEECCHHHHHH---HHHHHCCCCCCCEEEEECCCHHH-HH-HHHHHHHCCCE
Q ss_conf 98069960---6865211232458637984167889999---99874856782279984451246-68-98888875983
Q gi|254780439|r 652 GFETIMIN---CNPETVSTDYDIADRLYFESLTEEDILE---ILRVEQQKGELVGIIVQFGGQTP-LK-LSKILEKNQIP 723 (1162)
Q Consensus 652 G~~tImIN---~NPETVSTDyd~sDrLYFEplt~E~V~~---I~~~E~p~g~~~~vi~q~gGqt~-~~-la~~L~~~gv~ 723 (1162)
+.++|=|| ..|-|- ++ -+|++++.++. +++.=.|+. .|---||--- +. +-..+-.+|++
T Consensus 179 ~~dsVPIN~liPi~GTP---Le------~~~l~~~e~lr~iAl~RlilP~a----~Ir~agGRe~~l~~~q~~~~~aGaN 245 (279)
T PRK08508 179 SPHSTPINFFIPNPALP---LD------TPTLSADEALEIVRLAKEALPNA----RLMVAGGREVVFGERQYEIFEAGAN 245 (279)
T ss_pred CCCEECCCCCCCCCCCC---CC------CCCCCHHHHHHHHHHHHHHCCCC----EEEECCCHHHHCHHHHHHHHHHCCC
T ss_conf 99875156765899998---88------89999999999999999978987----6562465244556369999984684
Q ss_pred --EEE----CCCCHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf --861----27520331028678999888709866
Q gi|254780439|r 724 --ILG----TQPDSIDLAEDRDRFQKLLMELDLNQ 752 (1162)
Q Consensus 724 --ilG----ts~~~Id~aEDR~~F~~ll~~l~i~~ 752 (1162)
+.| |.-.+ ..+|. ++++++|...
T Consensus 246 ~i~~G~yLTt~G~~--~~~D~----~mi~~lG~~v 274 (279)
T PRK08508 246 AIVIGDYLTTKGEA--PKKDI----EKLKSLGFEF 274 (279)
T ss_pred EEEECCCCCCCCCC--HHHHH----HHHHHCCCEE
T ss_conf 68886652789978--67999----9999869934
No 310
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=86.74 E-value=2.1 Score=21.07 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=105.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCC
Q ss_conf 6999976775420505466688899999999879---7899974876501078451310043379999999999862898
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG---YRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPD 84 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~G---i~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pD 84 (1162)
+||-+||.|.| |.+..++|...+ ++.+.+..+.+-.. ...+.++ .+++ .+... -..+||
T Consensus 3 ~rVgiiG~GAI-----------G~~Va~~l~~~~~~~~~l~~~~~~~~~~~--~~~~~~~--~~~~--~~~~l-la~~pD 64 (267)
T PRK13301 3 HRIAFIGLGAI-----------ASDVAAGLLADAAQPCQLAALTRNAADLP--PALAGRV--ALLD--GLPGL-LAWRPD 64 (267)
T ss_pred EEEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEEEECCHHHHH--HHHCCCC--CCCC--CHHHH-HCCCCC
T ss_conf 17999851699-----------99999998617776528999815335555--5532566--5457--75777-412899
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89975887026888899887596288287571499899986058899999999878--9888620002344333332333
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIP--LATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~g--ip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
-|+=.=|-+---..+....++|. .++=.|.-++-.-+=++.+.+..++.| +-+|-..+.
T Consensus 65 lVvE~As~~Av~~~a~~vL~~G~------dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ipsGAIg------------- 125 (267)
T PRK13301 65 LVVEAAGQQAIAEHAEGCLTAGL------DMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIA------------- 125 (267)
T ss_pred EEEECCCHHHHHHHHHHHHHCCC------CEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHH-------------
T ss_conf 99989798999999999997599------69998237847988999999999977986997473010-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CEE---EEECCCCCCCCCCCCCCH
Q ss_conf 3333444444443333222111111233444444455444899999999987199-699---941326786645111699
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGL-PLI---IRPSFTLGGTGGGIAYNR 238 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGy-Pvi---vRps~~lGG~G~~iv~n~ 238 (1162)
-+| ++..+..-|- -|. -+|...+.|.--+.-.+.
T Consensus 126 -----------------------------------------GlD-~l~aa~~~~~~~v~~~trKpp~~~~~~~~~~~~dl 163 (267)
T PRK13301 126 -----------------------------------------GLD-YLQAVAGRDDAEVVYESRKPVAAWRAELPGMGIDP 163 (267)
T ss_pred -----------------------------------------CHH-HHHHHHCCCCCEEEEEEECCCHHCCCCCHHCCCCH
T ss_conf -----------------------------------------468-99987507974699997448111145401026671
Q ss_pred HH-------HHHHHHHHHHHCCCC-CEEEEEECC--CCEEEEEEEEEECC
Q ss_conf 99-------999999899857998-279866449--97899999997289
Q gi|254780439|r 239 SE-------FLEIVENGLHASPTT-EVLIEESVL--GWKEYELEMMRDIK 278 (1162)
Q Consensus 239 ee-------L~~~~~~al~~s~~~-~vlIeksl~--g~kEiE~eVirD~~ 278 (1162)
+. |+--..+|.+.||-+ +|-.-=+|. |+....++++.|-.
T Consensus 164 ~~l~e~~~iF~GsArEA~~~FP~NvNVaaalaLAg~G~d~T~V~i~aDP~ 213 (267)
T PRK13301 164 DTLAESRTLFSGPAREAALRFPKNLNVAATLALAGIGMTRTRVEVVVDPR 213 (267)
T ss_pred HHCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 21367769973089999987776340999999863586534999997899
No 311
>PRK06182 short chain dehydrogenase; Validated
Probab=86.51 E-value=2.1 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=9.7
Q ss_pred HHHHHHHHHHCCCEEEEECC
Q ss_conf 89999999987978999748
Q gi|254780439|r 30 GTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 30 ~~qa~~alke~Gi~vVlVNs 49 (1162)
|-..++.|-++|++|++..-
T Consensus 16 G~a~a~~la~~G~~V~~~~r 35 (273)
T PRK06182 16 GKATARKLIAEGFTVYGAAR 35 (273)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999987998999979
No 312
>PRK05868 hypothetical protein; Validated
Probab=86.49 E-value=1.3 Score=22.76 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 5699997677542050546668889999999987978999748765
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
.|||||+|+|+- |--+...|++.|++|.++--.|+
T Consensus 1 ~~kVlIvGaGiA-----------GlalA~~L~r~G~~VtV~Er~p~ 35 (372)
T PRK05868 1 MKTVLVSGASVA-----------GTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999999898889-----------99999999858998899957999
No 313
>PRK12533 RNA polymerase sigma factor; Provisional
Probab=86.44 E-value=1.7 Score=21.63 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99987530376027999986533799889998858999999988
Q gi|254780439|r 527 VEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNEIRKI 570 (1162)
Q Consensus 527 ~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~ 570 (1162)
+.+.|...+ +...+.+.-.-..|+|-..||..+++++..|+..
T Consensus 131 l~~AL~~Lp-~~~R~vl~Lr~~eglS~~EIAeiLgip~gTVKSR 173 (217)
T PRK12533 131 VNAALAKLP-VEYREVLVLRELEDMSYREIAAIADVPVGTVMSR 173 (217)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998099-9886899999980999999999989499999999
No 314
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.41 E-value=1.5 Score=22.24 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=32.6
Q ss_pred CCCCCCC--CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9776655--69999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDL--KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~di--kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
|..-.++ |||||+|-|.. |..+++.|++.|++++..+.+|
T Consensus 1 m~~~~~~~~k~i~viGlG~s-----------G~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 1 MKTITTFQNKKVLVLGLAKS-----------GYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred CCCCCCCCCCEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 97630358998999977899-----------9999999998869899984886
No 315
>KOG0029 consensus
Probab=86.34 E-value=1.3 Score=22.75 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=30.5
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 76655699997677542050546668889999999987978999748
Q gi|254780439|r 3 KRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 3 ~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
...+.+||.|||+|.- |--|.|-|.+.|++|++.-.
T Consensus 11 ~~~~~~~VIVIGAGia-----------GLsAArqL~~~G~~V~VLEA 46 (501)
T KOG0029 11 EAGKKKKVIVIGAGLA-----------GLSAARQLQDFGFDVLVLEA 46 (501)
T ss_pred CCCCCCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEC
T ss_conf 4678883899898578-----------99999999975982599971
No 316
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.19 E-value=1.6 Score=21.83 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 77418997276302014766531899999999965980699606865
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
.+|||-|+||||= .--|+..|...||++.+---+|+
T Consensus 309 ~gkKVAVIGsGPA-----------GLaaA~~Lar~G~~VTVfE~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPA-----------GLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8998999897589-----------99999999975990699936888
No 317
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=86.10 E-value=2.2 Score=20.84 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 322898899999999999998718345764689999558984999850444
Q gi|254780439|r 306 ALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPR 356 (1162)
Q Consensus 306 ~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR 356 (1162)
.+.|+|++.++|...+.+|-++.|. .--|+||++ ++++|++-.-|=
T Consensus 263 ~~~L~d~~i~~La~l~~~iE~~fG~---PQDIEWa~~--~g~l~iLQaRPI 308 (870)
T PRK06241 263 SQTLTDEQILQLAELGRKIEAHFGC---PQDIEWCLA--DGQFYILQSRPI 308 (870)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCEEEE--CCEEEEEEECCC
T ss_conf 8999999999999999999998389---644101565--887999972564
No 318
>PRK06184 hypothetical protein; Provisional
Probab=85.98 E-value=1.2 Score=22.78 Aligned_cols=36 Identities=31% Similarity=0.600 Sum_probs=31.7
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
--|||+|+||. |--+...|...|+++++|..+|.+.
T Consensus 7 TDVlIVGaGPv-----------GL~lA~~La~~Gi~v~viEr~~~~~ 42 (503)
T PRK06184 7 TDVLIVGAGPT-----------GLTLAIELARRGVSFRLIEKSPTPF 42 (503)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 79899990999-----------9999999997799899994899988
No 319
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=85.98 E-value=1.3 Score=22.53 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=31.7
Q ss_pred HHCCCCHH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 76079824-899999999738978899877188989999999999
Q gi|254780439|r 482 AISIPCPD-RLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIV 525 (1162)
Q Consensus 482 ~L~~p~~~-Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv 525 (1162)
++.-|... .+-.++-|++.|.+++++.+...++|=+-+-|.+-.
T Consensus 413 ~ivG~~A~elI~~~a~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa 457 (467)
T PRK07845 413 VVVAPRASELILPIAVAVQNRLTVDDLAQTFAVYPSLSGSITEAA 457 (467)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 998999899999999999883989999316777987899999999
No 320
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=85.88 E-value=2.3 Score=20.76 Aligned_cols=149 Identities=19% Similarity=0.214 Sum_probs=88.4
Q ss_pred CEEEEECC-CCEE---ECC---CCCCCHH---HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHH
Q ss_conf 41899727-6302---014---7665318---999999999659806996068652112324586379841678899999
Q gi|254780439|r 619 KKIVILGG-GPNR---IGQ---GIEFDYC---CCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEI 688 (1162)
Q Consensus 619 kkviVlGs-Gp~R---IGq---giEFDy~---~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I 688 (1162)
|+..|.|| ||.+ .=+ .+.||.- -...++.|-+.|-..++| | .||+.+....++..
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLi----E-----------T~~D~l~~KaA~~a 177 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILI----E-----------TIFDTLNAKAAVFA 177 (311)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE----E-----------HHCCHHHHHHHHHH
T ss_conf 75389873268677677687666359999999999999998378758997----5-----------22168989999999
Q ss_pred HHHHCC-CCCCCEEEEE---------CCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 987485-6782279984---------451246689888887598386127520331028678999888709866854211
Q gi|254780439|r 689 LRVEQQ-KGELVGIIVQ---------FGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGIS 758 (1162)
Q Consensus 689 ~~~E~p-~g~~~~vi~q---------~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a 758 (1162)
++...- .|.-.-|+.+ +.||++......|+..|.-++|-.+..= .+.-+..++++-......
T Consensus 178 ~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~G-----p~~m~~~l~~ls~~~~~~--- 249 (311)
T COG0646 178 AREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALG-----PDEMRPHLRELSRIADAF--- 249 (311)
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCEECCCCCHHHHHHHHHCCCCCEEEECCCCC-----HHHHHHHHHHHHHCCCCE---
T ss_conf 999987327765479999980376123798689999986635974785345668-----899999999987416924---
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 215665556553697167513444456541255489999999997
Q gi|254780439|r 759 HSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLD 803 (1162)
Q Consensus 759 ~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~ 803 (1162)
+.+--..|+|... |..+.--.+++++..++..
T Consensus 250 ------vs~~PNAGLP~~~-------g~~~~Y~~~p~~~a~~~~~ 281 (311)
T COG0646 250 ------VSVYPNAGLPNAF-------GERAVYDLTPEYMAEALAE 281 (311)
T ss_pred ------EEEECCCCCCCCC-------CCCCCCCCCHHHHHHHHHH
T ss_conf ------9980799997546-------8845268998999999999
No 321
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=85.83 E-value=2.3 Score=20.74 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=87.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99997677542050546668889999999987978999748765010784513100433799999999998628988997
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp 88 (1162)
||||.|++.- .|+.-++.|. .+.+++.+.... -|. ...+.+.++++..+||.|+-
T Consensus 2 ~iLi~G~~Gq----------LG~~L~~~l~-~~~~v~a~~~~~------~Di--------td~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 2 KILITGANGQ----------LGTELRRALP-GEFEVIATDRAE------LDI--------TDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred CEEEECCCCH----------HHHHHHHHHC-CCCEEEECCCCC------CCC--------CCHHHHHHHHHHHCCCEEEE
T ss_conf 5899769876----------7999999717-784399515765------555--------68589999998619998998
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58870268888998875962882875714998999860588999999998789888620002344333332333333344
Q gi|254780439|r 89 TTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEEREN 168 (1162)
Q Consensus 89 ~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~ 168 (1162)
+-. .|+.+-|..=.+ .-|.|.-. --....+++.++|.+..-- |||.. |.+
T Consensus 57 ~AA-yt~vD~aE~~~e----~A~~vNa~-----------~~~~lA~aa~~~ga~lVhi----STDyV----------FDG 106 (281)
T COG1091 57 AAA-YTAVDKAESEPE----LAFAVNAT-----------GAENLARAAAEVGARLVHI----STDYV----------FDG 106 (281)
T ss_pred CCC-CCCCCCCCCCHH----HHHHHHHH-----------HHHHHHHHHHHHCCEEEEE----ECCEE----------ECC
T ss_conf 732-036541338989----97776779-----------9999999999719769996----34457----------438
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 44444433332221111112334444444554448999999999871-996999413267866451116999999
Q gi|254780439|r 169 LKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEI-GLPLIIRPSFTLGGTGGGIAYNRSEFL 242 (1162)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~i-GyPvivRps~~lGG~G~~iv~n~eeL~ 242 (1162)
-+... +...... .+.-.|.+.-.--|+ ++... -.=+|+|.|...|..|+.++..+-+|-
T Consensus 107 ~~~~~---------Y~E~D~~---~P~nvYG~sKl~GE~---~v~~~~~~~~I~Rtswv~g~~g~nFv~tml~la 166 (281)
T COG1091 107 EKGGP---------YKETDTP---NPLNVYGRSKLAGEE---AVRAAGPRHLILRTSWVYGEYGNNFVKTMLRLA 166 (281)
T ss_pred CCCCC---------CCCCCCC---CCHHHHHHHHHHHHH---HHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 98988---------8778999---970245477897899---999739987999856554588877899999985
No 322
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=85.79 E-value=1.3 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=26.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99997677542050546668889999999987978999748765
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
.|+|+|+||. |--.-..|...||++++|...+.
T Consensus 4 ~V~IVGaGP~-----------GL~LA~lLar~GI~~vVlEr~~~ 36 (392)
T PRK08243 4 QVAIIGAGPA-----------GLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999997799-----------99999999977998899976899
No 323
>PRK06126 hypothetical protein; Provisional
Probab=85.73 E-value=1.7 Score=21.74 Aligned_cols=37 Identities=32% Similarity=0.564 Sum_probs=31.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 699997677542050546668889999999987978999748765010
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
--|||+|+||. |--+.-.|...|+++++|..+|.+..
T Consensus 8 ~DVlIVGaGPv-----------GL~lA~~La~~Gi~v~viEr~~~~~~ 44 (545)
T PRK06126 8 TPVLIVGGGPV-----------GLALALELGRRGVDSILVERGDGTAF 44 (545)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 99899994989-----------99999999987999999889999887
No 324
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=85.72 E-value=1.3 Score=22.76 Aligned_cols=36 Identities=28% Similarity=0.654 Sum_probs=31.5
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
--|||+|+||. |--+...|...|+++++|..+|.+.
T Consensus 13 ~dVlIVGaGPv-----------GL~lA~~Lar~Gi~v~vvEr~~~~~ 48 (554)
T PRK06183 13 TDVVIVGAGPV-----------GLTLANLLGQQGVRVLVLERWPTLY 48 (554)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 88899995989-----------9999999997799999991899988
No 325
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.72 E-value=2.3 Score=20.70 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=64.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE-----ECCCCHHHHHHHHHHHCC
Q ss_conf 999976775420505466688899999999879789997487650107845131004-----337999999999986289
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY-----TEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY-----~ePlt~e~v~~Ii~~E~p 83 (1162)
||||+|.|.+ |+.+++.|-..|++.+-+-.+ .+|.. .++.-..+ +.-.-.+...+=++.-.|
T Consensus 1 kVlivG~Ggl-----------G~~va~~L~~~Gv~~i~ivD~-D~v~~-~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np 67 (143)
T cd01483 1 RVLLVGLGGL-----------GSEIALNLARSGVGKITLIDF-DTVEL-SNLNRQFLARQADIGKPKAEVAARRLNELNP 67 (143)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHHCCCCEEEEEC-CCCCC-CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
T ss_conf 9999997989-----------999999999937971999978-98750-0146422589889492248999999985689
Q ss_pred CEEEECCCCCH-HHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88997588702-688889988759628828757149989998605889999999987898886200
Q gi|254780439|r 84 DAILPTTGGQT-ALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSIL 148 (1162)
Q Consensus 84 DaIlp~~GGqt-alnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~ 148 (1162)
+-=+-.+-.+- .-+. . -.++++.+-+.++. ..+.|....+.|.+.++|..-+..
T Consensus 68 ~v~i~~~~~~~~~~~~-~-----~~~~~~dvvi~~~D-----~~~~r~~l~~~~~~~~ip~i~~~~ 122 (143)
T cd01483 68 GVNVTAVPEGISEDNL-D-----DFLDGVDLVIDAID-----NIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred CCEEEEEECCCCHHHH-H-----HHHCCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8389999456896469-9-----99759999998779-----999999999999986998899636
No 326
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=85.69 E-value=2.3 Score=20.69 Aligned_cols=87 Identities=16% Similarity=0.294 Sum_probs=34.6
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHH---HCCCCEE-EEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHC
Q ss_conf 74189972763020147665318999999999---6598069-9606865211232458637984167889999998748
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLK---EAGFETI-MINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQ 693 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr---~~G~~tI-mIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~ 693 (1162)
.++++|+|+|.. +.+.+..++ +.||+.+ .++.+|+.-... .+.-++ =+.+++.++++.++
T Consensus 128 ~rrvLIIG~g~~-----------~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~---~~~pvl--g~~~~l~~~i~~~~ 191 (451)
T TIGR03023 128 LRRVLIVGAGEL-----------GRRLAERLARNPELGYRVVGFFDDRPDARTGV---RGVPVL--GKLDDLEELIREGE 191 (451)
T ss_pred CCEEEEEECCHH-----------HHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC---CCCCCC--CCHHHHHHHHHHCC
T ss_conf 754999968689-----------99999999719436848999983885444445---799736--98999999999679
Q ss_pred CCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEE
Q ss_conf 567822799844---5124668988888759838
Q gi|254780439|r 694 QKGELVGIIVQF---GGQTPLKLSKILEKNQIPI 724 (1162)
Q Consensus 694 p~g~~~~vi~q~---gGqt~~~la~~L~~~gv~i 724 (1162)
.+. |++.. ..+....+-..|++.|+.+
T Consensus 192 ide----Viia~~~~~~~~~~~li~~~~~~~v~v 221 (451)
T TIGR03023 192 VDE----VYIALPLAAEKRILELLDALEDLTVDV 221 (451)
T ss_pred CCE----EEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 988----999548355689999999986459879
No 327
>PRK13984 putative oxidoreductase; Provisional
Probab=85.67 E-value=2 Score=21.08 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=29.1
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6777418997276302014766531899999999965980699606865
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
+..+|||-|+||||= .--|+..|..+||++.+---+|+
T Consensus 280 ~~tGKKVAVIGsGPA-----------GLaaA~~Lar~Gh~VtVFE~~~~ 317 (604)
T PRK13984 280 PKKGKKVAIVGSGPA-----------GLSAAYFLATMGYEVEVYESLSK 317 (604)
T ss_pred CCCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCC
T ss_conf 878998999898689-----------99999999986986899745677
No 328
>PRK06753 hypothetical protein; Provisional
Probab=85.53 E-value=1.4 Score=22.38 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99997677542050546668889999999987978999748765
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
||+|+|+||. |.-+..+|++.|+++.++-.+|.
T Consensus 2 kV~IVGaGia-----------GL~~A~~L~~~G~~v~V~Er~~~ 34 (373)
T PRK06753 2 KIAIIGAGIG-----------GLTAAALLQEQGHTVKVFEKNES 34 (373)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8999994589-----------99999999977999999888999
No 329
>PRK08507 prephenate dehydrogenase; Validated
Probab=85.49 E-value=1.5 Score=22.22 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=29.4
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCEE
Q ss_conf 9999767754205054666888999999998797--899974876501
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNPATI 54 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNpaTi 54 (1162)
||.|||.|=| |..-.+|||+.|. +++.++.|+.+.
T Consensus 2 ~I~IiGlGLi-----------GgSla~alk~~~~~~~V~g~d~~~~~~ 38 (275)
T PRK08507 2 KIGIIGLGLM-----------GGSLGLALKENKLISCVYGYDHNEEHE 38 (275)
T ss_pred EEEEEECCHH-----------HHHHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf 8999900878-----------999999999509986799995999999
No 330
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.49 E-value=1.7 Score=21.82 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5569999767754205054666888999999998797899974876
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
+=|+|||+|.|+. +..-++.|.+.|-++.+|-|++
T Consensus 12 ~~k~vLVvGGG~V-----------A~rK~~~Ll~~ga~VtVvsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGGGKI-----------AYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9987999889899-----------9999999987879699999986
No 331
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.45 E-value=1.3 Score=22.76 Aligned_cols=35 Identities=6% Similarity=0.257 Sum_probs=18.1
Q ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 38879887259999644128999999999998898999
Q gi|254780439|r 1024 IGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIM 1061 (1162)
Q Consensus 1024 ~g~~lP~~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~ 1061 (1162)
+-..||..-+|++.++.--..-+. +.|.+-|-+++
T Consensus 906 ~PTeIp~~etV~lvgGg~GnavLf---~ilr~~g~~Vl 940 (1048)
T PRK06567 906 SPLEIPQNKKIVIVDSEVGNIGLL---KVLKENNNEVI 940 (1048)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHH---HHHHHCCCEEE
T ss_conf 985379997699986873088999---99997698699
No 332
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=85.41 E-value=1.2 Score=22.83 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=29.7
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
--|+|+|+||. |.-+..+|...|+++++|..+|.
T Consensus 6 ~DV~IvGaGp~-----------Gl~lAl~La~~G~~v~lie~~~~ 39 (386)
T PRK07494 6 TDIAVSGGGPA-----------GLAAAIALASAGASVALVAPAPP 39 (386)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 86899990689-----------99999999878998899957998
No 333
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=85.21 E-value=1.5 Score=22.20 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=45.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE--EEEECCCCCEEECCCCCCCCEEEC-CCCHHHHHHHHHHHCCC
Q ss_conf 699997677542050546668889999999987978--999748765010784513100433-79999999999862898
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR--IILVNSNPATIMTDPDLADATYTE-PITPEVVAKIIEKERPD 84 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~--vVlVNsNpaTi~TD~~~aD~vY~e-Plt~e~v~~Ii~~E~pD 84 (1162)
++|+|||+|+- |.+|+.+||+.|+. +++|-..| ..-|-- ||...++..- .+.
T Consensus 4 ~~iVIIG~G~A-----------G~~aA~~lR~~g~~g~Itli~~E~----------~~PY~Rp~Lsk~~l~~~----~~~ 58 (400)
T PRK09754 4 KTIIIVGGGQA-----------AAMAAASLRQQGFTGELHLFSDER----------HLPYERPPLSKSMLLED----SPQ 58 (400)
T ss_pred CEEEEECCHHH-----------HHHHHHHHHHCCCCCCEEEEECCC----------CCCCCCHHCCHHHHCCC----CHH
T ss_conf 72999977599-----------999999998069499799998999----------99886510739987699----724
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEE-ECCCHHHHHHH
Q ss_conf 8997588702688889988759628828757-14998999860
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEM-IGAKPETIDKA 126 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~-lG~~~~~I~~~ 126 (1162)
.. .|.....+++.+|.+ +|+....|+..
T Consensus 59 ~~--------------~l~~~~~y~~~~I~l~~g~~v~~id~~ 87 (400)
T PRK09754 59 LQ--------------QVLPANWWQENNVHLHSGVTIKTLGRD 87 (400)
T ss_pred HH--------------HCCCHHHHHHCCCEEECCCEEEEECCC
T ss_conf 43--------------248987998789699889889997188
No 334
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=85.06 E-value=1.4 Score=22.45 Aligned_cols=29 Identities=34% Similarity=0.812 Sum_probs=27.2
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9997677542050546668889999999987978999748
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
|+|+|+||- |+.|-+.|.+.|++|+|+.-
T Consensus 3 VvvvGaGPa-----------G~~aA~~~A~~G~~Vllle~ 31 (343)
T TIGR02032 3 VVVVGAGPA-----------GSSAAYRLAKKGLRVLLLEK 31 (343)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCEEEEEEE
T ss_conf 899827746-----------89999999956973889850
No 335
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=84.91 E-value=1.3 Score=22.60 Aligned_cols=46 Identities=7% Similarity=0.112 Sum_probs=34.6
Q ss_pred HHCCCCHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7607982489-999999973897889987718898999999999999
Q gi|254780439|r 482 AISIPCPDRL-RTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDV 527 (1162)
Q Consensus 482 ~L~~p~~~Rl-~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~ 527 (1162)
++.-|...-| -.+.-|++.|++++++.+....+|=|-+-|.++..+
T Consensus 393 ~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~HPTlsE~l~e~~~~ 439 (441)
T PRK08010 393 SLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSL 439 (441)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99899989999999999987898999931777798748999999984
No 336
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=84.73 E-value=2.5 Score=20.37 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=78.6
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH-HHHHHCCCEEE
Q ss_conf 99965980699606865211232458637984167889999998748567822799844512466898-88887598386
Q gi|254780439|r 647 SLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLS-KILEKNQIPIL 725 (1162)
Q Consensus 647 aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la-~~L~~~gv~il 725 (1162)
.++..++..+++= +++....| ..=+.+.+... .+ .......+++|+|| .....+ .-|++.|++..
T Consensus 369 ~~~~~~~~~llvi------~~~~~~~~----~~~~a~~~~~~--~~-~~~~k~~v~~~~gg-~~~~~~~~~l~~~gip~~ 434 (598)
T COG1042 369 LLRDENVDALLVI------VLPPASAD----PEETAEAIIRA--TA-KKRGKPVVVSSMGG-ESSEKARRLLEEAGIPTY 434 (598)
T ss_pred HHHCCCCCEEEEE------ECCCCCCC----CHHHHHHHHHH--HH-HHCCCCEEEEECCC-CCHHHHHHHHHHCCCCCC
T ss_conf 8606577558999------63787788----41456788777--76-61697659996677-652667877641588766
Q ss_pred ECCCCHHHHCC--------------------------CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 12752033102--------------------------8678999888709866854211215665556553697167513
Q gi|254780439|r 726 GTQPDSIDLAE--------------------------DRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRP 779 (1162)
Q Consensus 726 Gts~~~Id~aE--------------------------DR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRP 779 (1162)
.|+.......- +---+.+++...+++.|++ .+.+.+|+..+++.+| =+.-|
T Consensus 435 ~~pe~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~--Kl~s~ 511 (598)
T COG1042 435 PTPERAVKALSALARYRRWLKKLRETPVFEGGGGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG--KLRSP 511 (598)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHH--HCCCC
T ss_conf 68077788999999888887653067632377864157431455799846865654-5679899999999741--20467
Q ss_pred CCCCCCCCCEEE--CCHHHHHHHHHHH
Q ss_conf 444456541255--4899999999975
Q gi|254780439|r 780 SYVLGGRAMQIV--YSENMLQDYLLDT 804 (1162)
Q Consensus 780 SyVLGG~~M~Iv--~~~~eL~~yl~~a 804 (1162)
...-.--.-.+. -+..+.++....-
T Consensus 512 ~i~hksev~gv~l~~~~~~v~~a~~~~ 538 (598)
T COG1042 512 DIDHKSEVGGVMLNRTADAVEKAADDI 538 (598)
T ss_pred CCCHHHHCCCEEECCCHHHHHHHHHHH
T ss_conf 421134216604267399999999877
No 337
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=84.66 E-value=2.1 Score=21.02 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHCCCCHHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 76079824899-999999738978899877188989999999999
Q gi|254780439|r 482 AISIPCPDRLR-TVAQALRLGVSVEETHQSSNIDPWFIQQIKMIV 525 (1162)
Q Consensus 482 ~L~~p~~~Rl~-~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv 525 (1162)
++.-|...-|. .+.-|++.|.+++++.+...++|=+-+-|++=.
T Consensus 410 ~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa 454 (464)
T PRK05976 410 QAVGPHVSELISEFALALEMGARLEDVAGTIHAHPTLSEAVGEAA 454 (464)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 998999999999999999879989999217777987899999999
No 338
>PRK10262 thioredoxin reductase; Provisional
Probab=84.54 E-value=1.7 Score=21.80 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 5699997677542050546668889999999987978999748
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
--+|+|||+||- |-.|.--+...|.++++|.+
T Consensus 6 ~~dviIIG~GPA-----------GLsAA~~a~r~g~~~~lie~ 37 (321)
T PRK10262 6 HSKLLILGSGPA-----------GYTAAVYAARANLQPVLITG 37 (321)
T ss_pred EEEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEC
T ss_conf 600999997689-----------99999999986996799960
No 339
>PRK07236 hypothetical protein; Provisional
Probab=84.54 E-value=1.5 Score=22.04 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9776655699997677542050546668889999999987978999748
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
|+.-++ .||+|+|+|+- |.-+..+|++.|+++.++--
T Consensus 1 ~~~~~~-~kV~IVGaGia-----------GL~~A~~L~~~G~~v~v~Er 37 (386)
T PRK07236 1 MTHMSK-PRAVVVGGSLG-----------GLFAANLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCC-CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEECC
T ss_conf 998999-96899993689-----------99999999858999899868
No 340
>PRK08244 hypothetical protein; Provisional
Probab=84.51 E-value=1.5 Score=22.18 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=30.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 9999767754205054666888999999998797899974876501
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
-|||+|+||. |--+-..|...|+++++|..++.+.
T Consensus 4 DVlIVGaGPv-----------GL~lAl~La~~Gv~v~vvEr~~~~~ 38 (494)
T PRK08244 4 DVIIIGGGPV-----------GLMLASELALAGVRTCVIERLKEPV 38 (494)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999994789-----------9999999997799999990899988
No 341
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=84.24 E-value=2.4 Score=20.53 Aligned_cols=38 Identities=29% Similarity=0.500 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCEEE
Q ss_conf 56999976775420505466688899999999879--78999748765010
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSNPATIM 55 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsNpaTi~ 55 (1162)
-|+|+|+|+| |.|.++.+.|...- .+++||+.|+....
T Consensus 3 ~~~iVIlGgG-----------fgGl~~a~~l~~~~~~~~itLVd~~~~hl~ 42 (405)
T COG1252 3 KKRIVILGGG-----------FGGLSAAKRLARKLPDVEITLVDRRDYHLF 42 (405)
T ss_pred CCEEEEECCC-----------HHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 7569998986-----------799999997641678871899918876666
No 342
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=84.16 E-value=2.7 Score=20.19 Aligned_cols=233 Identities=19% Similarity=0.151 Sum_probs=112.3
Q ss_pred HHCCCCHHHHHHHHHH------HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHH---HHHHCC
Q ss_conf 7607982489999999------97389788998771889899999999999999875303760--279999---865337
Q gi|254780439|r 482 AISIPCPDRLRTVAQA------LRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPK--DFQNLQ---AIKAMG 550 (1162)
Q Consensus 482 ~L~~p~~~Rl~~i~eA------lr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~--~~~~l~---~aK~~G 550 (1162)
+...--|+|.|-+.=| |.-|+-.+-..-...|--=||++=..-+-..-.+.+.+..- +..-+- -.-..|
T Consensus 351 ~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G 430 (627)
T COG1154 351 KFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG 430 (627)
T ss_pred HHHHHCCHHHEEHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99885845333023568889999999985799988999237787778889999886069859998467645899986551
Q ss_pred CCH-HHHHHHH------CCCHHHHHHHHHH---CCCEEEEEEEC---CCCCCCCC-CCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 998-8999885------8999999988986---39847998621---43244366-585589720677666553223567
Q gi|254780439|r 551 FSD-ARLSILS------GIPCNEIRKIRHQ---MGLHPVFKCVD---TCAGEFSS-PTSYMYSTYETNFINKPVSEDKVS 616 (1162)
Q Consensus 551 FSD-~~IA~l~------~~~e~~Vr~~R~~---~~i~P~yK~VD---tcAgEF~a-~T~Y~YsTY~~e~~~~~~~e~~~~ 616 (1162)
.-| ..++.+- -.++++.|++-.. ++-.|+--+.- ++...... ..+--++.|+ ...
T Consensus 431 ~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~-----------i~~ 499 (627)
T COG1154 431 LFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGE-----------LLK 499 (627)
T ss_pred HHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE-----------EEE
T ss_conf 888998734898578667999999999999986478874899468888887766555513465368-----------872
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 77418997276302014766531899999999965980699606865211232458637984167889999998748567
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKG 696 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g 696 (1162)
.+.+|++|+-|.. =.-|-.++..|.+.|+.+-+| |-.|.-||..+-+.++.+..+.-=
T Consensus 500 ~G~~vail~~G~~--------~~~al~vae~L~~~Gi~~TVv--------------d~rfvkPlD~~ll~~La~~h~~~v 557 (627)
T COG1154 500 EGEKVAILAFGTM--------LPEALKVAEKLNAYGISVTVV--------------DPRFVKPLDEALLLELAKSHDLVV 557 (627)
T ss_pred CCCCEEEEECCHH--------HHHHHHHHHHHHHCCCCCEEE--------------CCEECCCCCHHHHHHHHHHCCEEE
T ss_conf 5880899944222--------689999999998639873788--------------671267779999999986568699
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC----CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 8227998445124668988888759----83861275203310286789998887098668
Q gi|254780439|r 697 ELVGIIVQFGGQTPLKLSKILEKNQ----IPILGTQPDSIDLAEDRDRFQKLLMELDLNQP 753 (1162)
Q Consensus 697 ~~~~vi~q~gGqt~~~la~~L~~~g----v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p 753 (1162)
+..=-+-.|| -...++.-|.++| +.-+|-+- ..=|+.+=.+++.++|+.-+
T Consensus 558 -tlEe~~~~GG-~Gs~v~efl~~~~~~~~v~~lglpd----~fi~hg~~~el~~~~gLd~~ 612 (627)
T COG1154 558 -TLEENVVDGG-FGSAVLEFLAAHGILVPVLNLGLPD----EFIDHGSPEELLAELGLDAE 612 (627)
T ss_pred -EEECCCCCCC-HHHHHHHHHHHCCCCCCEEEECCCH----HHHCCCCHHHHHHHCCCCHH
T ss_conf -9963731463-7899999999649987337713876----76436999999988399989
No 343
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.15 E-value=1.4 Score=22.48 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-EECCCC
Q ss_conf 569999767754205054666888999999998797899-974876
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRII-LVNSNP 51 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vV-lVNsNp 51 (1162)
-|+|||||+|.. +.-++.+|.+.|.+.| ++|-|+
T Consensus 19 ~k~vlIlGaGGa-----------arai~~aL~~~g~~~I~i~nR~~ 53 (155)
T cd01065 19 GKKVLILGAGGA-----------ARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEECCH
T ss_conf 999999867589-----------99999999971998228860899
No 344
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.10 E-value=1.6 Score=21.89 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=31.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
|||+|+|-|-. |..+.+.|++.|.++...+.||...
T Consensus 10 k~v~v~GlG~s-----------G~s~a~~L~~~G~~V~~~D~~~~~~ 45 (457)
T PRK01390 10 KTVALFGLGGS-----------GLATARALKAGGAEVIAWDDNPDSV 45 (457)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 98999943699-----------9999999997899799993992066
No 345
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=84.06 E-value=1.5 Score=22.08 Aligned_cols=123 Identities=12% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHHCCCHHHH--HHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 7718898999--99999999999875303760------279999865337998899988589999999889863984799
Q gi|254780439|r 509 QSSNIDPWFI--QQIKMIVDVEHRIREHGLPK------DFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVF 580 (1162)
Q Consensus 509 elT~Id~wFl--~~i~~iv~~e~~l~~~~~~~------~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~i~P~y 580 (1162)
+|++.=-|+. .-+.||..+-.-|-.--.-+ -.+-.+.|++.|+-=+.+-++.+....-=++-|.+=+|--.=
T Consensus 84 ~L~~~~~~~~~e~AV~HLfrVAsGLdS~V~GE~QILGQvk~ay~~a~~~~~~g~~L~rl~~kA~~vgkRVR~ET~I~~~a 163 (436)
T TIGR01035 84 DLEKYLYILLGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFKKALSVGKRVRTETDISKGA 163 (436)
T ss_pred CCCEEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 33504777517789999999851212201031128889999999987358710689999999987735421204668885
Q ss_pred EEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 862143244366585589720677666553223567774189972763020147665318999999999659806996
Q gi|254780439|r 581 KCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI 658 (1162)
Q Consensus 581 K~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI 658 (1162)
=-|=--|=|-... .=+++--..+|++|+|.|- ++-=+++.|++.|...|.|
T Consensus 164 VSvssAAVelA~~----------------ifG~erL~~~~~LliGAGe-----------Mg~Lva~~L~~~~v~~~~i 214 (436)
T TIGR01035 164 VSVSSAAVELAEK----------------IFGSERLKGKKVLLIGAGE-----------MGELVAKHLREKGVGKVLI 214 (436)
T ss_pred CCHHHHHHHHHHH----------------HHCCCCCCCCEEEEEECCH-----------HHHHHHHHHHHCCCCEEEE
T ss_conf 0012777789998----------------7256211664189982745-----------7999999996489528988
No 346
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=83.98 E-value=0.76 Score=24.50 Aligned_cols=46 Identities=33% Similarity=0.497 Sum_probs=35.8
Q ss_pred CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 838612752033102867899988870986685421121566555655369
Q gi|254780439|r 722 IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIG 772 (1162)
Q Consensus 722 v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG 772 (1162)
-|+||.=.|.|-.---|+ |-+.|+|=|+.+.+|..--...|..+||
T Consensus 231 NPLLGSVHDPIYQGa~RD-----LAE~GvPEPk~GLVT~AHGGvLFIDEIG 276 (616)
T TIGR02903 231 NPLLGSVHDPIYQGARRD-----LAETGVPEPKLGLVTDAHGGVLFIDEIG 276 (616)
T ss_pred CCCCCCCCCCCCCCCCHH-----HCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 776776257655676401-----1047879898987100477567650211
No 347
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=83.90 E-value=2.7 Score=20.11 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 189999999996598069960686521123
Q gi|254780439|r 639 YCCCHASFSLKEAGFETIMINCNPETVSTD 668 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~~tImIN~NPETVSTD 668 (1162)
|+|+-.+.++...|.+.+.+-.+|+|-..|
T Consensus 66 ~t~~at~~ai~~~G~~pv~~Di~~~t~~id 95 (352)
T cd00616 66 FTFVATANAILLLGATPVFVDIDPDTYNID 95 (352)
T ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 763989999998599899840777857758
No 348
>PRK06834 hypothetical protein; Provisional
Probab=83.76 E-value=1.9 Score=21.36 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=30.7
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 6999976775420505466688899999999879789997487650
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPAT 53 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaT 53 (1162)
..|||+|+||. |--+-..|...|+++++|..+|..
T Consensus 4 ~dVlIVGaGPv-----------GL~lA~~La~~Gi~v~viE~~~~~ 38 (488)
T PRK06834 4 HAVVIAGGGPT-----------GLMLAGELALAGVDVAIVERRVDQ 38 (488)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98999893889-----------999999999769999999689998
No 349
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.57 E-value=1.4 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHH
Q ss_conf 9999999973897889987718-89899999999
Q gi|254780439|r 491 LRTVAQALRLGVSVEETHQSSN-IDPWFIQQIKM 523 (1162)
Q Consensus 491 l~~i~eAlr~G~sv~ei~elT~-Id~wFl~~i~~ 523 (1162)
|-.++-|++.|.+++++.+.+. .+|=|=+-|++
T Consensus 414 I~~~a~ai~~~~t~~dl~~~~~~~HPTlsE~i~e 447 (452)
T TIGR03452 414 IQPLITAMAFGLDAREMARKQYWIHPALPEVVEN 447 (452)
T ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHH
T ss_conf 9999999988697999941875579962899999
No 350
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=83.42 E-value=2.8 Score=19.97 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=16.5
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 689854420121147766666773100100222267
Q gi|254780439|r 407 YIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGR 442 (1162)
Q Consensus 407 yv~vK~p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr 442 (1162)
||+...+-|+|..-.| ..+--|.++--||..++-
T Consensus 266 yVaAP~sTiD~~~~~G--~~I~IEER~p~Ev~~v~g 299 (346)
T COG0182 266 YVAAPLSTIDFELKSG--EDIPIEERDPEEVLEVGG 299 (346)
T ss_pred EEECCCCCCCCCCCCC--CCCCEEECCHHHEEEECC
T ss_conf 9974667646666778--756502058789576466
No 351
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.40 E-value=2 Score=21.19 Aligned_cols=45 Identities=4% Similarity=0.034 Sum_probs=33.6
Q ss_pred HHCCCCHHHHHH-HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 760798248999-999997389788998771889899999999999
Q gi|254780439|r 482 AISIPCPDRLRT-VAQALRLGVSVEETHQSSNIDPWFIQQIKMIVD 526 (1162)
Q Consensus 482 ~L~~p~~~Rl~~-i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~ 526 (1162)
++.-|+..-|.. +.-|++.|.+++++.+....+|=+-+-|.++..
T Consensus 392 ~ivg~~A~elI~~~~lai~~~~t~~dl~~~i~~hPT~sE~l~e~f~ 437 (438)
T PRK07251 392 TLFGAGSHEIINIITMAMDNKIPYTYFTKQIFTHPTMAENLNDLFA 437 (438)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 9989998999999999998839899994057779864758768761
No 352
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=83.36 E-value=2.8 Score=19.95 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 6999976775420505466688899999999879789997
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILV 47 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlV 47 (1162)
.+|||||+|.. |+.+..-|=-.|.-+|-|
T Consensus 22 s~VLiiGaGgL-----------Gs~~~~~LA~AGVG~i~i 50 (210)
T TIGR02356 22 SHVLIIGAGGL-----------GSPAALYLAAAGVGTITI 50 (210)
T ss_pred CCEEEEEECHH-----------HHHHHHHHHHCCCCEEEE
T ss_conf 86599972614-----------568999998288837899
No 353
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=83.23 E-value=2.9 Score=19.92 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=41.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-C----CCCC--EEE---------CCCCC-------CCCE
Q ss_conf 6999976775420505466688899999999879789997-4----8765--010---------78451-------3100
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILV-N----SNPA--TIM---------TDPDL-------ADAT 64 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlV-N----sNpa--Ti~---------TD~~~-------aD~v 64 (1162)
|||||+-++- |.+ +..++.--..+|++.|.+.|.| + ++|- .+. .-|.+ .++.
T Consensus 5 kKVLILtas~---G~G--H~~AA~AL~e~l~~~~~~~v~v~D~~~~~~p~~~~~~~~~Yl~~~~~~p~l~~~~Y~~~~~~ 79 (388)
T PRK13609 5 PKVLILTAHY---GNG--HVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITDITKYLYLKSYTIGKELYRLFYYGVEKI 79 (388)
T ss_pred CEEEEEECCC---CHH--HHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9799997888---827--89999999999983599819998514302704888998888888553588999999643222
Q ss_pred EEC-------CCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 433-------799999999998628988997588
Q gi|254780439|r 65 YTE-------PITPEVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 65 Y~e-------Plt~e~v~~Ii~~E~pDaIlp~~G 91 (1162)
|-. .+....+.++|+.++||.|+.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~li~~~kPDvII~T~P 113 (388)
T PRK13609 80 YDKKIASWYANFGRKRLKLLLQAEKPDIVINTFP 113 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 2156789999997999999999829599998887
No 354
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=83.13 E-value=2.9 Score=19.89 Aligned_cols=174 Identities=19% Similarity=0.254 Sum_probs=109.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 99999965980699606865211232458637984167889999998748567822799844512466898888875983
Q gi|254780439|r 644 ASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIP 723 (1162)
Q Consensus 644 a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ 723 (1162)
-+++.++.|...|=| .==|||-=.|+.+|++.=++.+ +..|-..+=|-.=-++|.+|.++|+.
T Consensus 54 ~~~~a~~fGV~kvKl----------------TGGEPlLR~D~~~Ii~~~~~~~-~~~vSmTTNG~LL~~~A~~Lk~AGLd 116 (324)
T TIGR02668 54 IVRVASEFGVRKVKL----------------TGGEPLLRKDLIEIIRRIKDYG-IKDVSMTTNGILLEKLAKKLKEAGLD 116 (324)
T ss_pred HHHHHHHCCCCEEEE----------------CCCCCCHHHHHHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 999998708832775----------------1787434566999998614675-03442030314489899999982856
Q ss_pred EEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCCCEEECCHHH-HHHHH
Q ss_conf 8612752033102867899988870986685421121566555655369-716751344445654125548999-99999
Q gi|254780439|r 724 ILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIG-FPLLIRPSYVLGGRAMQIVYSENM-LQDYL 801 (1162)
Q Consensus 724 ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iG-yPVLVRPSyVLGG~~M~Iv~~~~e-L~~yl 801 (1162)
=.=-|.+++| +++|.++-= -+......+-++++.|-++| .||=|=- =|+.|. |..+ +.+.+
T Consensus 117 RVNVSLdtld----~e~Y~kITG------~~~~~~~~Vi~GI~~A~~~GL~PVKlN~-Vvl~G~------N~~~~~~~m~ 179 (324)
T TIGR02668 117 RVNVSLDTLD----PEKYKKITG------QSRDALDRVIEGIESAVDAGLTPVKLNM-VVLKGI------NDNEEIPDMV 179 (324)
T ss_pred EEEECCCCCC----HHHHHHHCC------CCCCHHHHHHHHHHHHHHCCCCCEEEEE-EEECCC------CCCCCHHHHH
T ss_conf 1312026788----678886448------9986078999999999972898137888-875477------8850079999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCCCCCEEEEEC
Q ss_conf 97521013221111223333333345577774567022012010010102307984999852011021524576279816
Q gi|254780439|r 802 LDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLP 881 (1162)
Q Consensus 802 ~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVHSGDS~~v~P 881 (1162)
+-+ ++=.. ..+.+=||......|.+..+++
T Consensus 180 ~f~-----------------------------------------------~~~~~---g~~LQlIEl~~~~~G~~s~~~~ 209 (324)
T TIGR02668 180 EFA-----------------------------------------------ADYEG---GAILQLIELMPPGEGENSKELK 209 (324)
T ss_pred HHH-----------------------------------------------HHHHC---CCEEEEEECCCCCCCCCCHHHH
T ss_conf 999-----------------------------------------------87515---9368986112688888722114
Q ss_pred CCCCC-HHHHHHHHHHHHHHH
Q ss_conf 86689-999999999999998
Q gi|254780439|r 882 SRSLS-QQLKDELISQTKALA 901 (1162)
Q Consensus 882 pqsLs-~~~~~~i~~~t~~ia 901 (1162)
.+..+ +...++|.+.|.++.
T Consensus 210 ~y~~d~~~ie~~l~~~A~~~~ 230 (324)
T TIGR02668 210 KYHIDIDPIEEELEKRADRVE 230 (324)
T ss_pred HHCCCHHHHHHHHHHHCCCCH
T ss_conf 231773789999997504110
No 355
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=83.12 E-value=2.6 Score=20.27 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=24.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC---CEEEEECCCC
Q ss_conf 999976775420505466688899999999879---7899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG---YRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G---i~vVlVNsNp 51 (1162)
.|+|+|+||. |.-+..+|...| +++++|..+.
T Consensus 5 DV~IvGaGp~-----------Gl~lAl~L~~~g~~~~~v~viE~~~ 39 (395)
T PRK05732 5 DVIIVGGGMA-----------GATLALALSRLSHGRLPVALIEAFA 39 (395)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 9899993899-----------9999999996188997499993788
No 356
>PRK00078 Maf-like protein; Reviewed
Probab=83.06 E-value=2.7 Score=20.11 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=47.3
Q ss_pred EEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCC
Q ss_conf 96068652112324586379841678899999987485678227998445124668988888759838612752033102
Q gi|254780439|r 657 MINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAE 736 (1162)
Q Consensus 657 mIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aE 736 (1162)
++|++.+.+.++++++ +++|-+|+.+.+.+-++.+.|.+..=++-+|=- +.++-...+-.--+|+|=+.
T Consensus 110 l~~~~~~~~~~~~~~t-~V~f~~ls~~~I~~Yv~~~~~~~kAG~y~ieg~---g~~~i~~I~G~~~nV~GLPl------- 178 (192)
T PRK00078 110 ILDTKSNKIITDFVCT-EVKFSELTDRQIRKYINTGEPMDKAGAYGIQGK---GGVFVEEINGCYYNVVGLPL------- 178 (192)
T ss_pred EEECCCCEEEEEEEEE-EEEECCCCHHHHHHHHHCCCCCCEEEEEECCCC---HHHCEEEEECCCCCCCCCCH-------
T ss_conf 9988999799999989-999848999999999804997471048202338---56553411998765027899-------
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 867899988870986
Q gi|254780439|r 737 DRDRFQKLLMELDLN 751 (1162)
Q Consensus 737 DR~~F~~ll~~l~i~ 751 (1162)
..+.++|+++|++
T Consensus 179 --~~l~~~L~~~G~~ 191 (192)
T PRK00078 179 --NKLYKMLEEMGVN 191 (192)
T ss_pred --HHHHHHHHHCCCC
T ss_conf --9999999986899
No 357
>KOG1706 consensus
Probab=83.05 E-value=2.9 Score=19.87 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCC---------CCCCEEECCCCHHHHH
Q ss_conf 6556999976775420505466688899999999879789997487650107845---------1310043379999999
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPD---------LADATYTEPITPEVVA 75 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~---------~aD~vY~ePlt~e~v~ 75 (1162)
...+++...=||.. |-|| ..-=|+|.|++||.---|.--. .|.+ =|-++|+|-++-|+|+
T Consensus 3 ~~~~~vVLAySGgL--------DTsc--il~WLkeqGyeViay~AnvGQ~-edfe~ar~kAlk~Gakk~~~ed~~~eFve 71 (412)
T KOG1706 3 SSKKSVVLAYSGGL--------DTSC--ILAWLKEQGYEVIAYLANVGQK-EDFEEARKKALKSGAKKVVVEDVREEFVE 71 (412)
T ss_pred CCCCEEEEEECCCC--------CCHH--HHHHHHHCCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 77745999953886--------7234--3588886296589840015626-66899997533127607986131588876
Q ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99986289889975887026888899887596288287571499899986058899999999878988862000234433
Q gi|254780439|r 76 KIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK 155 (1162)
Q Consensus 76 ~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~ 155 (1162)
++| .|.+- +..|.|+ .-+||||..-- -..+.+-++-.....-.+.+....+
T Consensus 72 dfi--------~Pa~q-------s~a~YEd-------~YLLGTSlaRp-------~ia~~qv~va~~eg~~aVsHGcTGK 122 (412)
T KOG1706 72 DFI--------WPALQ-------SSALYED-------RYLLGTSLARP-------VIAKAQVDVAQREGAKAVSHGCTGK 122 (412)
T ss_pred HCC--------HHHHH-------HCCHHHC-------EEEECCCCCCC-------HHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 020--------16443-------1121010-------13422444431-------3433353577651750330355667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 333233333334444444433332221111112334444444554448999999999871996999413
Q gi|254780439|r 156 EHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPS 224 (1162)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps 224 (1162)
.++.---+..+..++|+ ..+.+-|. -+..+..+....++++.|...|-||-+-|.
T Consensus 123 GNDQvrFELt~ysl~P~----------~kviapwr----mp~f~~rf~Gr~Dl~eYakq~giPvpvT~k 177 (412)
T KOG1706 123 GNDQVRFELTFYSLKPD----------VKVIAPWR----MPEFYERFKGRKDLLEYAKQHGIPVPVTPK 177 (412)
T ss_pred CCCCEEEEEEEECCCCC----------CEEECCCC----CHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 77402466533114776----------30333545----467887642714789999864997665688
No 358
>PRK08401 L-aspartate oxidase; Provisional
Probab=82.97 E-value=2.5 Score=20.45 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=29.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
-.|||||||.- |..|.-.+++.|.+|+++...|.
T Consensus 2 tdVlVVGsG~A-----------Gl~AAl~a~~~g~~v~li~k~~~ 35 (464)
T PRK08401 2 MKVGIVGGGLA-----------GLTAAISLAKKGFDVTVIGPGSK 35 (464)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 87999897699-----------99999999974996999958999
No 359
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=82.89 E-value=2.1 Score=21.02 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=32.2
Q ss_pred HHCCCCHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7607982489-9999999738978899877188989999999999
Q gi|254780439|r 482 AISIPCPDRL-RTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIV 525 (1162)
Q Consensus 482 ~L~~p~~~Rl-~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv 525 (1162)
++.-|...-| -.+.-|++.|.+++++.+....+|=|-+-+.+-.
T Consensus 406 ~ivg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPt~sE~~~~a~ 450 (460)
T PRK06292 406 HIIGPEAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLEEGLRTAL 450 (460)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 998999999999999999885989999417777988699999999
No 360
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.82 E-value=1.9 Score=21.42 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=27.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 69999767754205054666888999999998797899974876
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
--|||||||.- |..|.-++++.|.+|+++.-.+
T Consensus 13 ~DVlVIGsG~A-----------Gl~AA~~a~~~G~~V~li~K~~ 45 (591)
T PRK07057 13 FDVVIVGAGGS-----------GMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 78899996699-----------9999999987699589997889
No 361
>TIGR02152 D_ribokin_bact ribokinase; InterPro: IPR011877 This entry describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family. ; GO: 0004747 ribokinase activity, 0006014 D-ribose metabolic process.
Probab=82.80 E-value=2.3 Score=20.69 Aligned_cols=86 Identities=22% Similarity=0.170 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCC------CEEECCCCCCCCEEEC-----CCCHHHHHHHH-HHHCCCEEEECCCCCH
Q ss_conf 6888999999998797899974876------5010784513100433-----79999999999-8628988997588702
Q gi|254780439|r 27 DYSGTQACKALKEEGYRIILVNSNP------ATIMTDPDLADATYTE-----PITPEVVAKII-EKERPDAILPTTGGQT 94 (1162)
Q Consensus 27 Dys~~qa~~alke~Gi~vVlVNsNp------aTi~TD~~~aD~vY~e-----Plt~e~v~~Ii-~~E~pDaIlp~~GGqt 94 (1162)
|--|.+.++.|+++||.|=-|..-. |.|+-|..=-.+.++- -||+++|.+-- ..++.|=|+.++=
T Consensus 64 D~~G~~~~~~l~~~Gi~t~~v~~~~~~~TG~A~I~V~~~G~N~I~v~~GAN~~l~~~~~~~~~~~i~~s~~~~~QlE--- 140 (303)
T TIGR02152 64 DAFGDELLENLKKEGIDTEYVKTVKDTPTGTAFIFVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLE--- 140 (303)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECC---
T ss_conf 77899999999874861021167177776358999837888579880275645798899999987746888997237---
Q ss_pred HHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 68888998875962882875714998999860588999999998789888
Q gi|254780439|r 95 ALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATP 144 (1162)
Q Consensus 95 alnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~ 144 (1162)
+|+++...+ -+++++.|++|.
T Consensus 141 -----------------------iP~etv~~a------~~~a~~~G~~vi 161 (303)
T TIGR02152 141 -----------------------IPLETVLEA------LKIAKKHGVKVI 161 (303)
T ss_pred -----------------------CCHHHHHHH------HHHHHHCCCCEE
T ss_conf -----------------------888999999------999996589898
No 362
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=82.76 E-value=2 Score=21.09 Aligned_cols=169 Identities=19% Similarity=0.295 Sum_probs=85.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCC-CCCCEEE-C--CCCHHHHHHHHHHHCCC
Q ss_conf 999976775420505466688899999999879789997487650107845-1310043-3--79999999999862898
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPD-LADATYT-E--PITPEVVAKIIEKERPD 84 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~-~aD~vY~-e--Plt~e~v~~Ii~~E~pD 84 (1162)
+|-|+|.||- |..|..+|-+.|++++|+.-|+..- -|. =|-=+++ . -|-.+.|.+=+ .|-.
T Consensus 2 RVAVvGGGPA-----------G~sAAE~LA~aG~~~~L~ER~~~~a--KPCGGAIPLCMv~EF~lP~d~iDRRV--~kMk 66 (401)
T TIGR02028 2 RVAVVGGGPA-----------GASAAETLAKAGIQTFLLERKLDNA--KPCGGAIPLCMVDEFDLPRDIIDRRV--TKMK 66 (401)
T ss_pred EEEEECCCCC-----------HHHHHHHHHHCCCEEEEEEECCCCC--CCCCCCCCCCCCCHHCCCHHHHHCCC--CEEE
T ss_conf 5889748974-----------1689999985031046332056788--77888644120101037866751211--0224
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECC-CHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC------CC
Q ss_conf 8997588702688889988759628828757149-9899986058899999999878988862000234433------33
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIGA-KPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIK------EH 157 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~-~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~------~~ 157 (1162)
-|=|+ |++.++.+. |++. +.+|. .-|.+| ..+++...+.|-.+.++.+.+..... +.
T Consensus 67 ~~SPS-------N~~~d~gr~--L~~~--~yIgM~RREVLD-----sflR~RA~~~GA~li~Glv~~l~~P~~p~~~PY~ 130 (401)
T TIGR02028 67 MISPS-------NIAVDIGRT--LKEH--EYIGMVRREVLD-----SFLRERAADAGATLINGLVLKLELPADPADDPYT 130 (401)
T ss_pred EECCC-------CHHHHHHCC--CCCC--CCCCCHHHHHHH-----HHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCE
T ss_conf 21641-------013320002--7887--612514578888-----9999999864881414445763177888778717
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCC
Q ss_conf 323333333444444443333222111111233444444455444-----8999999999871996
Q gi|254780439|r 158 DRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYIC-----HAMAVAVQALDEIGLP 218 (1162)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~ea~~~a~~iGyP 218 (1162)
.|+..+-..-++.-+.-+.++|.. ++....+++.. =+.+-|++|-++|-.|
T Consensus 131 lHY~~~Dg~~G~~g~~~~lEVD~V----------IGADGANSRvAk~idAGDY~~AIAfQERIRlP 186 (401)
T TIGR02028 131 LHYVEEDGKGGASGTKKTLEVDAV----------IGADGANSRVAKEIDAGDYDYAIAFQERIRLP 186 (401)
T ss_pred EEEEEECCCCCCCCCCEEEEEEEE----------ECCCCCCCHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf 898700687587645406888778----------70787520231113788523444433203687
No 363
>PRK08163 salicylate hydroxylase; Provisional
Probab=82.55 E-value=2.8 Score=20.04 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9776655699997677542050546668889999999987978999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|++ ..+|+|+|+||- |--+..+|+..|+++.++-..|+
T Consensus 1 M~~---~~~V~IVGaGia-----------GL~lA~~L~r~Gi~v~V~Er~~~ 38 (396)
T PRK08163 1 MTH---VTPVLIVGGGIG-----------GLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCC---CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 989---984999897889-----------99999999978999999917998
No 364
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=82.47 E-value=3.1 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=16.7
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHH---HCCCCEEE
Q ss_conf 774189972763020147665318999999999---65980699
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLK---EAGFETIM 657 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr---~~G~~tIm 657 (1162)
..++++|+|+|.. +-+.+..++ +.||+.+=
T Consensus 124 ~~rrvlIIG~g~~-----------~~~l~~~l~~~~~~g~~vvG 156 (445)
T TIGR03025 124 NLRRVLIVGTGEL-----------AEELAAALSRNPDLGYRVVG 156 (445)
T ss_pred CCCEEEEEECCHH-----------HHHHHHHHHHCCCCCEEEEE
T ss_conf 7723999908489-----------99999999828468848999
No 365
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.45 E-value=3.1 Score=19.70 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=19.0
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 18997276302014766531899999999965980699606865
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
||+|||.|. ...+|+.+.+.+|=.+....-+|+
T Consensus 167 kVlViGaGV-----------AGlqAi~tA~~LGA~V~a~DvR~~ 199 (510)
T PRK09424 167 KVLVIGAGV-----------AGLAAIGAAGSLGAIVRAFDTRPE 199 (510)
T ss_pred EEEEECCCH-----------HHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 289974647-----------779999999627978999658788
No 366
>COG4495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.34 E-value=0.45 Score=26.32 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=20.8
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 655699997677542050546668889
Q gi|254780439|r 5 QDLKTLLIIGAGPIVIGQACEFDYSGT 31 (1162)
Q Consensus 5 ~dikkvLviGsGpi~IGqa~EfDys~~ 31 (1162)
.+.+|++|||.|++..+....|||+++
T Consensus 19 ~~~~klMIi~R~~~k~~~~~~fDY~a~ 45 (109)
T COG4495 19 GGDSKLMIISRGQIKVDEETMFDYSAC 45 (109)
T ss_pred CCCEEEEEEECCCEEECCEEEECCCCC
T ss_conf 897689997046366065026031231
No 367
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=82.09 E-value=2.7 Score=20.09 Aligned_cols=36 Identities=17% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 77741899727630201476653189999999996598069960686
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNP 662 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NP 662 (1162)
...++|+|+|+|- ..+.++++|.+.|+++.++--.+
T Consensus 254 ~~~~~VaVIGAGI-----------AGas~A~~LA~rG~~VtVlDr~~ 289 (660)
T PRK01747 254 KRNRDAAIIGGGI-----------AGAALALALARRGWQVTLYEADE 289 (660)
T ss_pred CCCCCEEEECCHH-----------HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 7887189989389-----------99999999997899689994798
No 368
>PRK08948 consensus
Probab=82.02 E-value=3 Score=19.81 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=28.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECCCCCEEECCCCCCCCEE
Q ss_conf 9999767754205054666888999999998---79789997487650107845131004
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKE---EGYRIILVNSNPATIMTDPDLADATY 65 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke---~Gi~vVlVNsNpaTi~TD~~~aD~vY 65 (1162)
-|+|+|+||. |.-..-+|.. .|++|.+|..++......+....+++
T Consensus 2 DV~IvGaG~v-----------Gl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~ 50 (392)
T PRK08948 2 SVIIVGGGMA-----------GATLALAISRLSHGALPVALIEATAPESDAHPGFDARAI 50 (392)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 4999995899-----------999999998616799849998278875445788884345
No 369
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=82.01 E-value=3 Score=19.82 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=29.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCE
Q ss_conf 999976775420505466688899999999879--789997487650
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILVNSNPAT 53 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlVNsNpaT 53 (1162)
-|+|+|+||. |.-+.-+|+..| ++++++.+.|..
T Consensus 3 DV~IVGaGpv-----------Gl~lAl~L~~~G~~~~v~vie~~~~~ 38 (403)
T PRK07333 3 DVVIAGGGYV-----------GLALAVALKQAAPHLPVIVVDAAPAG 38 (403)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 3999994699-----------99999999846999669998288666
No 370
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.91 E-value=3.2 Score=19.56 Aligned_cols=146 Identities=11% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC--EEECCCCCCCCE-E-ECCCCHHHHHHH
Q ss_conf 776655699997677542050546668889999999987978999748765--010784513100-4-337999999999
Q gi|254780439|r 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA--TIMTDPDLADAT-Y-TEPITPEVVAKI 77 (1162)
Q Consensus 2 P~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa--Ti~TD~~~aD~v-Y-~ePlt~e~v~~I 77 (1162)
=....=|||||+|-|-- |..+.+.|.+.|.++.+.+.++. .+..-......+ | .++...+.
T Consensus 2 ~~~~~~k~vlV~GlG~s-----------G~a~a~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~---- 66 (501)
T PRK02006 2 FGDRQRPMVLVLGLGES-----------GLAMARWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPAL---- 66 (501)
T ss_pred CCCCCCCEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHH----
T ss_conf 76668983999833688-----------999999999789849999899998619999860898189778898678----
Q ss_pred HHHHCCCEEEECCCCCHH-HHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 986289889975887026-8888998875962882875714998999860588999999998789888620002344333
Q gi|254780439|r 78 IEKERPDAILPTTGGQTA-LNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKE 156 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqta-lnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~ 156 (1162)
.+..|-|+.+=|=-.- -+....|.+ ..+.||+++ .|=++|.+.+..+.-....
T Consensus 67 --~~~~d~vV~SPGI~p~~p~~~~~l~~---A~~~gi~i~----------~eiel~~~~~~~~~~~~~~----------- 120 (501)
T PRK02006 67 --LDGVELVALSPGLSPLEPALAALLAA---ARERGIPVW----------GELELFAQALAALGASRGY----------- 120 (501)
T ss_pred --HCCCCEEEECCEECCCCCCHHHHHHH---HHHCCCCEE----------EHHHHHHHHHHHCCCCCCC-----------
T ss_conf --46899999899008888543199999---998799587----------6899999887630222356-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 3323333333444444443333222111111233444444455444899999999987199699
Q gi|254780439|r 157 HDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLI 220 (1162)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvi 220 (1162)
......++|..+.-++..-.-...+..|+.+.
T Consensus 121 --------------------------------~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~ 152 (501)
T PRK02006 121 --------------------------------APKVLAITGTNGKTTTTSLTGLLCERAGKKVA 152 (501)
T ss_pred --------------------------------CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf --------------------------------87489993899668799999999997699746
No 371
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=81.91 E-value=2.3 Score=20.73 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=27.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
-|+|||+||- |..|...+.+.|.+|.+|..++
T Consensus 8 DviVIGaGpa-----------G~~aA~~aa~~G~kV~viE~~~ 39 (465)
T PRK05249 8 DAVVIGSGPA-----------GEGAAMQAAKLGKRVAVIERYR 39 (465)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 9899997789-----------9999999997899299997699
No 372
>PRK07190 hypothetical protein; Provisional
Probab=81.88 E-value=2.4 Score=20.52 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 55699997677542050546668889999999987978999748765010
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIM 55 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~ 55 (1162)
+.--|||+|+||. |--+.-.|...|+++++|.-+|....
T Consensus 4 ~~tDVlIVGaGPv-----------GL~lA~~La~~Gv~v~VlEr~~~~~~ 42 (480)
T PRK07190 4 QVADVVIVGAGPV-----------GLMCAYLGQRCGINTVIVDKSDGPLE 42 (480)
T ss_pred CCCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 8644899993889-----------99999999887999999969999999
No 373
>PRK06116 glutathione reductase; Validated
Probab=81.87 E-value=1.9 Score=21.31 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHCCCCH-HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 7607982-489999999973897889987718898999999
Q gi|254780439|r 482 AISIPCP-DRLRTVAQALRLGVSVEETHQSSNIDPWFIQQI 521 (1162)
Q Consensus 482 ~L~~p~~-~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i 521 (1162)
++.-|.. +++-.++-|++.|.+++++.+....+|=+=+-+
T Consensus 406 ~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i~~hPT~sE~f 446 (450)
T PRK06116 406 HGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 99899999999999999987898999923676698623346
No 374
>PRK06370 mercuric reductase; Validated
Probab=81.84 E-value=2.5 Score=20.45 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHCCCCHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7607982489-99999997389788998771889899999999999
Q gi|254780439|r 482 AISIPCPDRL-RTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVD 526 (1162)
Q Consensus 482 ~L~~p~~~Rl-~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~ 526 (1162)
++.-|...-| -.++-|++.|++++++.+....+|=+-+-|.+...
T Consensus 408 ~ivg~~A~elI~~~~~ai~~~~t~~dl~~~i~~hPT~sE~l~~aa~ 453 (459)
T PRK06370 408 TILGVHGDEMIHEILDAMTAGAPYTTLSRAMHIHPTVSELIPTLAQ 453 (459)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9988999999999999998889899994077779886999999999
No 375
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.77 E-value=3.2 Score=19.52 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCEEEEECCCCEEECC-----------CCCC----C-HHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCEEEEEEC
Q ss_conf 7418997276302014-----------7665----3-1899999999965-98069960686521123245863798416
Q gi|254780439|r 618 RKKIVILGGGPNRIGQ-----------GIEF----D-YCCCHASFSLKEA-GFETIMINCNPETVSTDYDIADRLYFESL 680 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGq-----------giEF----D-y~~v~a~~aLr~~-G~~tImIN~NPETVSTDyd~sDrLYFEpl 680 (1162)
+++|.++..-.||+|- |++| | -.-..++..+++. ++..|+| ||+-|+..+.-
T Consensus 103 ~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~DvilI-----------DTAGR~~~d~~ 171 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILI-----------DTAGKNYRASE 171 (270)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCEEEE-----------ECCCCCCCCHH
T ss_conf 9908999838888889999999999819953545887899999999999769999999-----------79998714699
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 788999999874856782279984451246689888887
Q gi|254780439|r 681 TEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEK 719 (1162)
Q Consensus 681 t~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~ 719 (1162)
-.+.+..+.+.-+|+-.+.-+-..++||-..+.+.....
T Consensus 172 lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~ 210 (270)
T PRK06731 172 TVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 999999986063898799998687776999999998077
No 376
>KOG0256 consensus
Probab=81.76 E-value=3.2 Score=19.52 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHCCCCE----EEECCCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 121566555655369716----75134444565412554899999999975
Q gi|254780439|r 758 SHSVEHARLIACEIGFPL----LIRPSYVLGGRAMQIVYSENMLQDYLLDT 804 (1162)
Q Consensus 758 a~s~eea~~~a~~iGyPV----LVRPSyVLGG~~M~Iv~~~~eL~~yl~~a 804 (1162)
+.-+|+|+.-|.+.|-.| ++-||..||- .++.++|..++.-+
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-----~~~~e~L~~ll~Fa 255 (471)
T KOG0256 210 VEALEAALNQARKLGLKVKGVLITNPSNPLGT-----TLSPEELISLLNFA 255 (471)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-----CCCHHHHHHHHHHH
T ss_conf 99999999999981895248998279997777-----46999999999988
No 377
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=81.69 E-value=1.8 Score=21.51 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 76899999899750378767665576676645898999997607982489999-99997389788998771889899999
Q gi|254780439|r 442 RTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRSAISIPCPDRLRTV-AQALRLGVSVEETHQSSNIDPWFIQQ 520 (1162)
Q Consensus 442 r~f~eA~~KAlrsle~~~~g~~~~~~~~~~~~~~~~~l~~~L~~p~~~Rl~~i-~eAlr~G~sv~ei~elT~Id~wFl~~ 520 (1162)
+..-.+..+|+.+-+ ..||...... ..+++-|=-.+.-|...-|... +-|++.|.+.+++.....++|=+-+-
T Consensus 376 ~~~f~~~~ra~~~~~--~~G~~Klv~d----~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~ 449 (454)
T COG1249 376 KFPFAANGRAITMGE--TDGFVKLVVD----KETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEA 449 (454)
T ss_pred EECCCCCHHHHHCCC--CCCEEEEEEE----CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHH
T ss_conf 943576337776468--7727999997----8999199999989998999999999998799189983577679984698
Q ss_pred HHH
Q ss_conf 999
Q gi|254780439|r 521 IKM 523 (1162)
Q Consensus 521 i~~ 523 (1162)
+..
T Consensus 450 ~~~ 452 (454)
T COG1249 450 LKE 452 (454)
T ss_pred HHH
T ss_conf 996
No 378
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.50 E-value=3.3 Score=19.45 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=27.9
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 189972763020147665318999999999659806996068652112324586379841678899999987
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRV 691 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~ 691 (1162)
.++++++|. |- .-++.|+..|++.|+.+-+||. . .++|+..+.+..+...
T Consensus 507 dv~lia~Gs-------~v-~~Al~Aa~~L~~~Gi~~~Vv~~--~------------~~kp~D~~~~~~~~~~ 556 (642)
T PRK12571 507 DVAILSVGA-------HL-HECLEAAELLEAEGISVTVADA--R------------FVKPLDEALIAQLARR 556 (642)
T ss_pred CEEEEEEHH-------HH-HHHHHHHHHHHHCCCCEEEECC--C------------CCCCCCHHHHHHHHHH
T ss_conf 989998609-------99-9999999999866998699816--7------------3787799999999700
No 379
>PRK13175 consensus
Probab=81.50 E-value=2.4 Score=20.57 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 699997677542050546668889999999987978999748
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
+||.||.-|--.| ....+||++.|++++++.+
T Consensus 2 ~kI~IiD~g~gn~----------~si~~al~~lg~~~~i~~~ 33 (206)
T PRK13175 2 PKIAVIDYGMGNL----------HSVCKALERLGAEPILTSD 33 (206)
T ss_pred CEEEEEECCCCHH----------HHHHHHHHHCCCCEEEECC
T ss_conf 8799997997689----------9999999987998999799
No 380
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=81.44 E-value=3.3 Score=19.44 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 56999976775420505466688899999999879789997487650
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPAT 53 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaT 53 (1162)
-+||+|+|=|-- |.-+.+.|++.|.++.+.+.+|+.
T Consensus 7 ~~kv~V~GLG~s-----------G~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKS-----------GLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEECCCC-----------CHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 997999926651-----------099999999779869998389876
No 381
>PRK08132 hypothetical protein; Provisional
Probab=81.44 E-value=2.3 Score=20.67 Aligned_cols=36 Identities=22% Similarity=0.594 Sum_probs=30.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE
Q ss_conf 69999767754205054666888999999998797899974876501
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATI 54 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi 54 (1162)
--|||+|+||. |--+--.|...|+++++|.-+|.+.
T Consensus 24 tpVlIVGaGPv-----------GL~lA~~L~~~Gv~~~vvEr~~~~~ 59 (549)
T PRK08132 24 HPVVVVGAGPV-----------GLALAIDLAQQGVPVVLLDDDDTLS 59 (549)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999992579-----------9999999998799999995999999
No 382
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=81.32 E-value=3.3 Score=19.41 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=73.2
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCE------EEC-----CCCHHHHHHH
Q ss_conf 99997677542050546668889999999987978999748765010784513100------433-----7999999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADAT------YTE-----PITPEVVAKI 77 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~v------Y~e-----Plt~e~v~~I 77 (1162)
||||+|+|+| |+..+|-|--.|+.+ .+|=.-.-||.|..+.. .|- ---.+...+-
T Consensus 1 kvlvVGAGgI-----------GCEllKnlal~G~~~---~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk~Ks~vA~~~ 66 (435)
T cd01490 1 KVFLVGAGAI-----------GCELLKNFALMGVGT---GESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAA 66 (435)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCC---CCCCCEEEEECCCEECCCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 9899937764-----------189999999838786---89880899708847335753442756444897399999999
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9862898899758870268888998875962882875714998999860588999999998789888620002
Q gi|254780439|r 78 IEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
+++-+|+.=+..+-...+- -.........++++++-+- +++..+-|....+.|-..+.|..+|++.-
T Consensus 67 v~~~np~~~i~~~~~~v~~-~te~~f~~~f~~~~d~v~n-----aLDNv~aR~yv~~~Cv~~~~PLiEsGT~G 133 (435)
T cd01490 67 VKAMNPDLKITALQNRVGP-ETEHIFNDEFWEKLDGVAN-----ALDNVDARMYVDRRCVYYRKPLLESGTLG 133 (435)
T ss_pred HHHHCCCCEEEEECCCCCC-CCCCCCCHHHHHHCCEEEE-----CCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 9987899747860254567-7423367767843889998-----85788999999999997499837446787
No 383
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.29 E-value=3.1 Score=19.65 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 569999767754205054666888999999998797899974876
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
=++|||+|.|.. +..-++.|.+.|-++.+|-|+.
T Consensus 10 gk~vLVVGGG~v-----------A~rK~~~Ll~~gA~VtVvsp~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKV-----------AGRRAITLLKYGAHITVISPEI 43 (202)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC
T ss_conf 986999889899-----------9999999986899699986999
No 384
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=81.26 E-value=2.4 Score=20.54 Aligned_cols=32 Identities=34% Similarity=0.670 Sum_probs=28.3
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9997677542050546668889999999987978999748765
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|+|+|+||- |.-+..+|++.||+++++-.+|.
T Consensus 4 V~IvGaG~a-----------Gl~lA~~L~~~Gi~v~V~Er~~~ 35 (349)
T pfam01494 4 VLIVGGGPA-----------GLMLALLLARAGVRVVLVERHAT 35 (349)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899992889-----------99999999877998999928999
No 385
>PRK07588 hypothetical protein; Provisional
Probab=81.14 E-value=2.5 Score=20.42 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=27.4
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+|+|+|+- |.-+..+|++.|++++++--.|
T Consensus 2 kVlIvGaGia-----------GLalA~~L~r~G~~v~V~Er~~ 33 (391)
T PRK07588 2 KIAISGAGIA-----------GATLAHWLQRTGHEPTLIERAP 33 (391)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 7999993289-----------9999999986899989990389
No 386
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.05 E-value=2.2 Score=20.78 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 977665569999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+ ..|||||||.- |..|.-.+.+.|.+|++|.-.+
T Consensus 1 m~~----~DVlVIGsG~A-----------Gl~AAi~a~~~G~~V~v~~k~~ 36 (589)
T PRK08641 1 MAK----KKVIVVGGGLA-----------GLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CCC----CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 986----87899898699-----------9999999987599779997778
No 387
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=80.99 E-value=2.5 Score=20.36 Aligned_cols=163 Identities=25% Similarity=0.371 Sum_probs=96.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHH----HHHC
Q ss_conf 6999976775420505466688899999999879-7899974876501078451310043379999999999----8628
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG-YRIILVNSNPATIMTDPDLADATYTEPITPEVVAKII----EKER 82 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~G-i~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii----~~E~ 82 (1162)
+.|||+|+||| |-=|+-..|..| ++||..+.|-+..-.-+.|.- .|.--+..|++.+|. .-|.
T Consensus 163 ~~vlv~GaGPi-----------Glma~AVAKa~GA~~Vi~~d~neyRleLAkk~Ga-t~~vn~~kEd~~k~v~~lt~geG 230 (341)
T TIGR00692 163 EDVLVIGAGPI-----------GLMAVAVAKAAGARNVIVIDKNEYRLELAKKMGA-TRVVNVAKEDLVKVVAELTSGEG 230 (341)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHCCCCC
T ss_conf 71899857747-----------8999999877278405996586479999987098-65870101476898884038896
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
.|-.+===|-=.||.-..+....|= -|.+||.++..+-.
T Consensus 231 ~Dv~lEmSGaP~A~~~gL~~~~~gG----R~~~Lglpp~~vtI------------------------------------- 269 (341)
T TIGR00692 231 VDVVLEMSGAPKALEQGLDAVANGG----RVALLGLPPSDVTI------------------------------------- 269 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCC----EEEECCCCCCCEEE-------------------------------------
T ss_conf 4799864899179999999850688----08981368976126-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 33334444444433332221111112334444444554448999999999871996999413267866451116999999
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFL 242 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~ 242 (1162)
++ -=-||-|.-+--|=+|+..-..=-...
T Consensus 270 -----------------------------------------------D~----tNkviFKgLtI~GItGR~mfeTWy~vs 298 (341)
T TIGR00692 270 -----------------------------------------------DL----TNKVIFKGLTIKGITGRKMFETWYKVS 298 (341)
T ss_pred -----------------------------------------------EE----CCCEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf -----------------------------------------------30----374788642772000750467899999
Q ss_pred HHHHH-HHHHCC--CCCEE-EEEECCCCEEEEEEEEEECCC
Q ss_conf 99998-998579--98279-866449978999999972899
Q gi|254780439|r 243 EIVEN-GLHASP--TTEVL-IEESVLGWKEYELEMMRDIKG 279 (1162)
Q Consensus 243 ~~~~~-al~~s~--~~~vl-Ieksl~g~kEiE~eVirD~~g 279 (1162)
+.++. .++.+| +|++- +|+|=+| ||.||-++-
T Consensus 299 ~LiqS~~ldL~PiITH~f~G~d~fekg-----FelMRsGq~ 334 (341)
T TIGR00692 299 RLIQSNKLDLSPIITHKFKGLDEFEKG-----FELMRSGQS 334 (341)
T ss_pred HHHCCCCCCCCCEEECCCCCCHHHHHH-----HHHHHCCCC
T ss_conf 984268835684554026883146788-----887637895
No 388
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=80.93 E-value=3.4 Score=19.31 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=51.3
Q ss_pred CCCCCCCEEEEEEECCHHHHHH--HHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEHH---HH-HHH
Q ss_conf 7756310137774199999999--99998388798872599996441289999999999988989999388---89-999
Q gi|254780439|r 997 GPEMRSTGEVIGIDQDFPLAFA--KSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEG---TA-RFL 1070 (1162)
Q Consensus 997 GpEMkSTGEVmgig~~~~eA~~--Ka~~a~g~~lP~~g~vfisv~d~dK~~~~~~a~~l~~lGf~l~AT~G---Ta-~~L 1070 (1162)
=||==|.=|-|-+|.==..|-+ -+++-.|+--|..|-|++|+.--==-.+ .+..|++|||++.|..| .+ +||
T Consensus 113 LP~glsl~eAM~~GTAGfTAaL~V~aLe~~Gl~~P~~GpVlVTGAtGGVGS~--Av~~L~~lGY~V~A~tGk~~~~~~yL 190 (330)
T TIGR02823 113 LPEGLSLREAMALGTAGFTAALSVMALERNGLLTPEDGPVLVTGATGGVGSL--AVAILSKLGYEVVASTGKAEEEVEYL 190 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHH--HHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 8898898899986007789999999999726888888878870677877899--99999837976999737837788999
Q ss_pred HHCCCEEEEEEC
Q ss_conf 987981569750
Q gi|254780439|r 1071 ESHGLETQKINK 1082 (1162)
Q Consensus 1071 ~~~Gi~~~~v~k 1082 (1162)
++-|-. +++.+
T Consensus 191 ~~LGA~-evi~R 201 (330)
T TIGR02823 191 KELGAS-EVIDR 201 (330)
T ss_pred HHCCCC-CCCCH
T ss_conf 865811-05771
No 389
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.91 E-value=3.4 Score=19.31 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=48.1
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCEEECCCCCCCC-EEEC-CCCHHHHHHHHHHHCCC
Q ss_conf 699997677542050546668889999999987978-99974876501078451310-0433-79999999999862898
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR-IILVNSNPATIMTDPDLADA-TYTE-PITPEVVAKIIEKERPD 84 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~-vVlVNsNpaTi~TD~~~aD~-vY~e-Plt~e~v~~Ii~~E~pD 84 (1162)
|||+|+|-|-- |..|++.|++.|.. +|.++.|..+........+. .+++ ....+ ..+..|
T Consensus 9 kkv~V~GlG~s-----------G~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~d 71 (468)
T PRK04690 9 KRVALWGWGRE-----------GRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQ------RLAAFE 71 (468)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHH------HHHCCC
T ss_conf 97999834787-----------9999999996699049997288324646676204575674677855------761488
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEEC
Q ss_conf 899758870268888998875962882875714
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIG 117 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG 117 (1162)
-|+.+=|=-.-.-+...+. +.|++++|
T Consensus 72 ~vv~SPGi~~~~p~~~~a~------~~~i~i~~ 98 (468)
T PRK04690 72 VVVKSPGISPYRPEALAAA------AQGTPFIG 98 (468)
T ss_pred EEEECCCCCCCCHHHHHHH------HCCCCEEE
T ss_conf 9998995798689999999------87994886
No 390
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=80.90 E-value=2.6 Score=20.27 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=46.3
Q ss_pred EECCCCCCCCHHHHHHCC--------------CEEEEEECCCCCC------CC-----------CC--HHHHHHHHHHCC
Q ss_conf 750568781078898679--------------8549996789985------23-----------11--089999999709
Q gi|254780439|r 1080 INKVLEGRPHIEDAISNR--------------QVHLVINTTEGKK------AI-----------ED--SKSLRRATLIRK 1126 (1162)
Q Consensus 1080 v~k~~e~~~~i~d~i~~~--------------~i~lVINt~~~~~------~~-----------~d--g~~iRr~Ai~~~ 1126 (1162)
=+|=+||.|++--.||+- +-|.||.=|.... .- .| .++||..|-+||
T Consensus 228 E~Kq~EGdP~vKgRiRq~qr~~ar~rMm~~VPkAdVvITNPTHyAVALkY~~~~m~AP~VVAKG~D~~AlkI~eiA~en~ 307 (352)
T TIGR00328 228 ELKQSEGDPEVKGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMKAPVVVAKGVDELALKIKEIAEENN 307 (352)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 74126948443688999999999999987446897896376013455641488898887787788568899999998869
Q ss_pred CCEEECHHHHHHHHHH
Q ss_conf 9799459999999999
Q gi|254780439|r 1127 IPYYTTIAGADAVFQA 1142 (1162)
Q Consensus 1127 ip~~T~~~~a~a~~~a 1142 (1162)
||.+.+...|+++-..
T Consensus 308 v~~~e~PpLARaLY~~ 323 (352)
T TIGR00328 308 VPIVENPPLARALYRQ 323 (352)
T ss_pred CCEECCCHHHHHHHHH
T ss_conf 1144087358752110
No 391
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=80.71 E-value=3 Score=19.78 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=30.3
Q ss_pred HHCCCCHHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 7607982489-999999973897889987718898999999999
Q gi|254780439|r 482 AISIPCPDRL-RTVAQALRLGVSVEETHQSSNIDPWFIQQIKMI 524 (1162)
Q Consensus 482 ~L~~p~~~Rl-~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~i 524 (1162)
.+.-|...-| -.++-|++.|.+++++.+...++|=+-+-+++-
T Consensus 421 ~~vg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPT~~E~~~~A 464 (475)
T PRK06327 421 HVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEA 464 (475)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99899999999999999988898999940777798889999999
No 392
>PRK07233 hypothetical protein; Provisional
Probab=80.71 E-value=2.1 Score=20.98 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||.|||+|.- |-.|...|.+.|++|+++-.++
T Consensus 1 rVvVIGaG~a-----------GLsaA~~L~~~G~~V~VlEa~~ 32 (430)
T PRK07233 1 KIAIIGGGIM-----------GLAAAYRLAKAGHEVTVFEADD 32 (430)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 9899997789-----------9999999983999889995899
No 393
>PRK07804 L-aspartate oxidase; Provisional
Probab=80.69 E-value=2 Score=21.10 Aligned_cols=35 Identities=26% Similarity=0.511 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5569999767754205054666888999999998797899974876
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
.---|||||||.- |..|.-+++|.|.+|++|.--+
T Consensus 14 ~~tDVlVIG~G~A-----------Gl~AAi~a~~~G~~V~vv~K~~ 48 (533)
T PRK07804 14 DAADVVVIGTGVA-----------GLTAALAAHRAGRRVVVLSKAA 48 (533)
T ss_pred CCCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 2268899996499-----------9999999986799889997889
No 394
>TIGR00355 purH bifunctional purine biosynthesis protein PurH; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate . The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP .; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process.
Probab=80.65 E-value=1.3 Score=22.77 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC---EEEEE
Q ss_conf 18999999999659806996068652112324586---37984
Q gi|254780439|r 639 YCCCHASFSLKEAGFETIMINCNPETVSTDYDIAD---RLYFE 678 (1162)
Q Consensus 639 y~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sD---rLYFE 678 (1162)
|-|+.-...--..---.++-..||--+.+.....| .+||-
T Consensus 269 ~~~~~~~~~~~~~p~~~~~~~~~p~g~~~g~~~~~~~~~~~~~ 311 (569)
T TIGR00355 269 LPLVKEFDASLNEPAAVIVKHANPCGVALGKTLLDVEKQVYFV 311 (569)
T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHEEEE
T ss_conf 8888765431034202110014521100042134432220011
No 395
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=80.65 E-value=2.9 Score=19.93 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 999999999659806996
Q gi|254780439|r 641 CCHASFSLKEAGFETIMI 658 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImI 658 (1162)
..-++..+++.|.++.++
T Consensus 148 gle~A~~~~~~G~~v~l~ 165 (415)
T COG0446 148 GLEAAEAAAKRGKKVTLI 165 (415)
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999998779938999
No 396
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.48 E-value=3.5 Score=19.20 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=42.2
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCEEECCCCCCCCE-E----ECCCCHHHHHHHHHH
Q ss_conf 5699997677542050546668889999999987978-999748765010784513100-4----337999999999986
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYR-IILVNSNPATIMTDPDLADAT-Y----TEPITPEVVAKIIEK 80 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~-vVlVNsNpaTi~TD~~~aD~v-Y----~ePlt~e~v~~Ii~~ 80 (1162)
=.||||+|.|.+ |+.+...|--.|+. ..+|+. .+|.. .++.-.+ | +.--..+...+-+++
T Consensus 21 ~s~VlivG~GGl-----------Gs~~~~~La~~Gvg~i~lvD~--D~ve~-sNLnRQ~l~~~~diG~~K~~~a~~~l~~ 86 (228)
T cd00757 21 NARVLVVGAGGL-----------GSPAAEYLAAAGVGKLGLVDD--DVVEL-SNLQRQILHTEADVGQPKAEAAAERLRA 86 (228)
T ss_pred CCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEEC--CCCCC-CCCHHHHEECHHHCCCCHHHHHHHHHHH
T ss_conf 497899887788-----------999999999839975899978--74556-7642210237866878959999999985
Q ss_pred HCCCEEEECCC
Q ss_conf 28988997588
Q gi|254780439|r 81 ERPDAILPTTG 91 (1162)
Q Consensus 81 E~pDaIlp~~G 91 (1162)
-.|+.-+-.+-
T Consensus 87 iNp~i~i~~~~ 97 (228)
T cd00757 87 INPDVEIEAYN 97 (228)
T ss_pred HCCCCCCEEHH
T ss_conf 48875303132
No 397
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=80.38 E-value=3.6 Score=19.18 Aligned_cols=158 Identities=18% Similarity=0.301 Sum_probs=84.9
Q ss_pred EEEEEECCCCEEEEEEEEEEC-CCEEE-E--EEECCCCHHCCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 567022012010010102307-98499-9--85201102152457627981--686689999999999999998741335
Q gi|254780439|r 834 LLFDSYLSDAMEIDVDALCQN-DQVIV-V--GIIEHIEEAGIHSGDSACSL--PSRSLSQQLKDELISQTKALAGALNVI 907 (1162)
Q Consensus 834 VlIdkfl~~a~EiEVDai~Dg-~~v~I-~--gimEHiE~aGVHSGDS~~v~--PpqsLs~~~~~~i~~~t~~ia~~L~v~ 907 (1162)
=|-+.|. ++.+.+.+...=. -+++| | |.. |.|.-.+++ ++.+|..+..+++++.
T Consensus 35 qL~~gF~-G~~~~~~~~~~~~~~DvviLPv~G~~--------~~G~v~t~f~~~~~~l~~~~~~~~~~~----------- 94 (288)
T TIGR02853 35 QLEDGFT-GVEKLELDELDLSTLDVVILPVQGVS--------QDGKVATVFSNEKVVLKPELLEETKKH----------- 94 (288)
T ss_pred CCCCCCC-CHHHHCCCCCCCCCCCEEEECCCCCC--------CCCEEEEECCCCCEEECHHHHHHCCCC-----------
T ss_conf 3002313-30010134244446667881678859--------988487411587216466899520794-----------
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
Q ss_conf 76247885128859998524444563045677739889999999985972100246666777766687389972038834
Q gi|254780439|r 908 GLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFN 987 (1162)
Q Consensus 908 G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~ 987 (1162)
-.+|+==-|+|..+ .+|-+|.+|+++. +.|++| =||
T Consensus 95 -----------~~~~~Gisn~yL~~----l~~~a~~~Li~l~-----------------------erDdvA------IYN 130 (288)
T TIGR02853 95 -----------CTIYVGISNDYLEE----LAAEAGVKLIELF-----------------------ERDDVA------IYN 130 (288)
T ss_pred -----------EEEEECCCCHHHHH----HHHHCCCCEEEEC-----------------------CCCCEE------EEC
T ss_conf -----------38997377658999----9987196024100-----------------------357533------445
Q ss_pred HCCCCC------------CCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 459998------------67077563101377741999999999999838879887259999644128999999999998
Q gi|254780439|r 988 KFPGVD------------ILLGPEMRSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKK 1055 (1162)
Q Consensus 988 k~~g~D------------~~LGpEMkSTGEVmgig~~~~eA~~Ka~~a~g~~lP~~g~vfisv~d~dK~~~~~~a~~l~~ 1055 (1162)
-.|.|. ++.| |--=|.||||+ +.+....+.|-|-+ ++|.-|+...+ .|-.+
T Consensus 131 SIPtaEGAimMA~e~td~TIHg----S~v~VlGfGRt-G~tiAr~f~aLGA~--------V~V~AR~~~dl----ARI~E 193 (288)
T TIGR02853 131 SIPTAEGAIMMAIEHTDFTIHG----SNVMVLGFGRT-GMTIARTFSALGAR--------VSVGARSSADL----ARITE 193 (288)
T ss_pred CCCCHHHHHHHHHHCCCCCEEC----CEEEEECCCCH-HHHHHHHHHHCCCE--------EEEECCCHHHH----HHHHH
T ss_conf 8755678999997248962501----34578844705-68999999726980--------57531783678----99999
Q ss_pred CCCEEEEEHHHHHHHHH
Q ss_conf 89899993888999998
Q gi|254780439|r 1056 LGFKIMATEGTARFLES 1072 (1162)
Q Consensus 1056 lGf~l~AT~GTa~~L~~ 1072 (1162)
+||.=+-+.-=++...+
T Consensus 194 ~g~~P~~~~~L~~~v~e 210 (288)
T TIGR02853 194 MGLEPVPLNKLEEKVAE 210 (288)
T ss_pred HCCCCCCHHHHHHHHCC
T ss_conf 60688271678876500
No 398
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.35 E-value=2.6 Score=20.23 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--CCCCC
Q ss_conf 6999976775420505466688899999999879789997--48765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILV--NSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlV--NsNpa 52 (1162)
|+|+|||.|=| |....+|||+.|..+-++ +.|+.
T Consensus 1 k~V~IiGlGLI-----------GgSlalalk~~g~~~~i~~~d~~~~ 36 (357)
T PRK06545 1 KTVLIVGLGLI-----------GGSLALAIKAAGPDVFIIGYDPSGA 36 (357)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 97999977878-----------9999999985499769999669999
No 399
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=80.35 E-value=3.6 Score=19.17 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=40.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE--ECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 699997677542050546668889999999987978999--748765010784513100433799999999998628988
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIIL--VNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDA 85 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVl--VNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDa 85 (1162)
||+||++.+ .. .+-++.+....|++.|++++. +.+|| |+ =+.+.+.+..+.+++|.
T Consensus 30 ~r~liVtd~-~~------~~~~~~~v~~~L~~~gi~~~~~~~~~~p----t~-----------~~v~~~~~~~~~~~~D~ 87 (366)
T PRK09423 30 KRALLIADE-FV------LGIVGDTVEASLKDAGLDVVFEVFNGEC----SD-----------NEIDRLVAIAEENGCDV 87 (366)
T ss_pred CEEEEEECC-HH------HHHHHHHHHHHHHHCCCEEEEEECCCCC----CH-----------HHHHHHHHHHHHCCCCE
T ss_conf 958999895-28------9989999999998679869997338999----99-----------99999999998649998
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 99758870268888998
Q gi|254780439|r 86 ILPTTGGQTALNTALSL 102 (1162)
Q Consensus 86 Ilp~~GGqtalnl~~~L 102 (1162)
|+ ++||=.++.+++..
T Consensus 88 Ii-avGGGS~iD~AKai 103 (366)
T PRK09423 88 II-GIGGGKTLDTAKAV 103 (366)
T ss_pred EE-EECCHHHHHHHHHH
T ss_conf 99-93783887779999
No 400
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.27 E-value=2.6 Score=20.29 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred EEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 18997276302014766531899999999965980699606865211232458637984167889999998748567822
Q gi|254780439|r 620 KIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELV 699 (1162)
Q Consensus 620 kviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~ 699 (1162)
-++|.|-|+. .-++++.|++.|...++|-+.|+- .--++..|-+ --.-|-++++.-...++.++
T Consensus 206 H~IICGyG~~-----------g~~v~~eL~~~g~~vVVI~~~~~~-~~~~~~~~~I-~GDaTdd~~L~kAgI~~Ak~--- 269 (356)
T PRK10537 206 HFIICGHSPL-----------AINTYLGLRQRGQAVTVIVPLGEE-HRLPDDADLI-PGDSSDSAVLKKAGAARARA--- 269 (356)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCHH-HCCCCCCCEE-ECCCCCHHHHHHCCCHHHCE---
T ss_conf 6899898837-----------999999999729997999458044-3020568879-50899789998759345079---
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHH-HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 79984451246689888887598386127520331028678999-88870986685421121566555655369716751
Q gi|254780439|r 700 GIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQK-LLMELDLNQPRNGISHSVEHARLIACEIGFPLLIR 778 (1162)
Q Consensus 700 ~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~-ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVR 778 (1162)
+++-. ++-+ ..-|-- ..++++ |..+--..-+.++..+..++.|=-.++-
T Consensus 270 -VI~~~-~~Da---------------------------~NvfivLTAR~Ln-P~v~IVA~a~~~en~~KlrrAGAD~VIS 319 (356)
T PRK10537 270 -ILALR-DNDA---------------------------DNAFVVLAAKEMS-SDVKTVAAVNDSKNLEKIKRVHPDMIFS 319 (356)
T ss_pred -EEECC-CCCH---------------------------HHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCEEEC
T ss_conf -88807-8777---------------------------8999998499868-9976999967675799998628999986
Q ss_pred CCCCCCCCC
Q ss_conf 344445654
Q gi|254780439|r 779 PSYVLGGRA 787 (1162)
Q Consensus 779 PSyVLGG~~ 787 (1162)
|+ .+||+-
T Consensus 320 P~-~lGg~L 327 (356)
T PRK10537 320 PQ-LLGSEL 327 (356)
T ss_pred HH-HHHHHH
T ss_conf 88-878999
No 401
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=80.25 E-value=3.6 Score=19.15 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCCEEEEEEEEEECCCCEE
Q ss_conf 9999999998719969994132678664511169999999999899857998279-866449978999999972899889
Q gi|254780439|r 204 AMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVL-IEESVLGWKEYELEMMRDIKGNCI 282 (1162)
Q Consensus 204 s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vl-Ieksl~g~kEiE~eVirD~~gn~i 282 (1162)
+.++..+-+++-||=++-+ .|.+.-+++..-.++.+.+- ...+.++ +.-++.|+ |+.. +| +
T Consensus 205 ~~~~i~~~v~~~g~~Ii~~----KG~t~~~ia~a~~~iv~aIl-----~d~~~v~~~s~~l~ge----y~g~---~~-v- 266 (309)
T cd05294 205 DVEKIVETVKNAGQNIISL----KGGSEYGPASAISNLVRTIA-----NDERRILTVSTYLEGE----IDGI---RD-V- 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHH-----CCCCEEEEEEEEECCC----CCCC---CC-E-
T ss_conf 3999999998767998706----57405799999999999997-----6998599999884576----4773---67-7-
Q ss_pred EEEECCCCCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99630000001000-01013433732289889999999999999871
Q gi|254780439|r 283 VVCSIENLDPMGVH-TGDSITVAPALTLTDKEYQLMRNAAIAVLKEI 328 (1162)
Q Consensus 283 ~v~~~En~dp~GiH-tGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~l 328 (1162)
++ .-|+-+- .|.+.++ | +.|+++|.++|..++-.|-+.+
T Consensus 267 ~~-----s~P~~ig~~Gve~i~-~-l~L~~~E~~~l~~Sa~~ik~~~ 306 (309)
T cd05294 267 CI-----GVPVKLGKNGIEEIV-P-IEMDDDEREAFRKSAEIVKKYT 306 (309)
T ss_pred EE-----EEEEEECCCEEEEEE-C-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99-----999998279469995-8-9999999999999999999998
No 402
>pfam08830 DUF1806 Protein of unknown function (DUF1806). This is a bacterial family of uncharacterized proteins. The structure of one of the proteins in this family has been solved and it adopts a beta barrel-like structure.
Probab=80.25 E-value=2.2 Score=20.88 Aligned_cols=73 Identities=19% Similarity=0.442 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC---EEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCC
Q ss_conf 9999999889863984799862143244366585---5897206776665532235677741899727630201476653
Q gi|254780439|r 562 IPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTS---YMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFD 638 (1162)
Q Consensus 562 ~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~---Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFD 638 (1162)
++.++|.++-.++.-.|+|-.++|.-|-+.++-+ +--.+|-. |-..... ..-|-|.||||||--.+.-
T Consensus 3 I~~~~Vq~~L~~~~~~~vYiHlETTnGaYAsH~d~~~~~agafiR-------Na~v~ye--~~~I~G~gPyRVGLK~~~G 73 (114)
T pfam08830 3 IDKEDVQQLLESFANKPVYIHLETTNGAYASHFDEKFFSAGAYIR-------NAKVTYE--RAKITGNGPYRVGLKLEIG 73 (114)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCCCEEEEEE-------EEEEEEE--EEEEECCCCEEEEEECCCC
T ss_conf 688999999997459953999961556777625755552026887-------1289999--8489769961898875886
Q ss_pred HHHHH
Q ss_conf 18999
Q gi|254780439|r 639 YCCCH 643 (1162)
Q Consensus 639 y~~v~ 643 (1162)
|--+.
T Consensus 74 WvY~e 78 (114)
T pfam08830 74 WVYAE 78 (114)
T ss_pred EEEEC
T ss_conf 79971
No 403
>PRK05693 short chain dehydrogenase; Provisional
Probab=80.24 E-value=3.6 Score=19.15 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=27.2
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 72899889996300000010000101343373228988999999999999987183457646899995589849998504
Q gi|254780439|r 275 RDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMN 354 (1162)
Q Consensus 275 rD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvN 354 (1162)
|.+.|..+.++++--.-+. |-+. .|-.=..+-....+.|..| +.| ....|.-+.
T Consensus 119 ~~~~G~IVnisS~ag~~~~-----------p~~~----~Y~aSK~Al~~~s~sLr~E---------l~~--~gI~V~~v~ 172 (274)
T PRK05693 119 RRSRGLVVNIGSVSGVLVT-----------PFAG----AYCASKAAVHALSDALRLE---------LAP--FGVQVMEVQ 172 (274)
T ss_pred HHCCCEEEEEECCHHCCCC-----------CCCH----HHHHHHHHHHHHHHHHHHH---------HCC--CCCEEEEEE
T ss_conf 7589679998140532689-----------9973----7999999999999999998---------420--287899997
Q ss_pred CCCCHH
Q ss_conf 443103
Q gi|254780439|r 355 PRVSRS 360 (1162)
Q Consensus 355 pR~sRs 360 (1162)
|-.-+|
T Consensus 173 PG~i~T 178 (274)
T PRK05693 173 PGAIAS 178 (274)
T ss_pred CCCCCC
T ss_conf 188878
No 404
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=80.24 E-value=2.7 Score=20.16 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=27.6
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9997677542050546668889999999987978999748765
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|||||+|.- |.-|.-++.|.|.+|++|.-++.
T Consensus 2 VvVIG~G~A-----------Gl~AAi~Aae~Ga~VillEk~~~ 33 (401)
T pfam00890 2 VVVIGSGLA-----------GLAAALEAAEAGLKVAVVEKGQP 33 (401)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 899988699-----------99999999978994899978999
No 405
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=80.21 E-value=3.6 Score=19.14 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99987530376027999986533799889998858999999988
Q gi|254780439|r 527 VEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNEIRKI 570 (1162)
Q Consensus 527 ~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~ 570 (1162)
+.+.+...+ +.....+.-.-..|+|-..||..+|+++..|+..
T Consensus 151 L~~al~~Lp-~~qR~vl~Lr~~eglS~~EIAe~Lgis~gTVKsr 193 (222)
T PRK09647 151 LQAALDSLP-PEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSR 193 (222)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998299-9998899879963999999999989399999999
No 406
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=80.18 E-value=3.6 Score=19.14 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8999999999659
Q gi|254780439|r 640 CCCHASFSLKEAG 652 (1162)
Q Consensus 640 ~~v~a~~aLr~~G 652 (1162)
+.++.+-+|.+.|
T Consensus 186 SA~di~~~l~~~g 198 (443)
T COG2072 186 SAVDIAPELAEVG 198 (443)
T ss_pred CHHHHHHHHHHCC
T ss_conf 3999999997306
No 407
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=80.13 E-value=3.6 Score=19.12 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=7.7
Q ss_pred EECCCCHHHHHHHHHHHCC
Q ss_conf 4337999999999986289
Q gi|254780439|r 65 YTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 65 Y~ePlt~e~v~~Ii~~E~p 83 (1162)
|++=-|.+.+.+-|+.=..
T Consensus 31 ~v~~~t~~dv~~AIk~M~V 49 (351)
T PRK05720 31 YVTLTTAEEVADAIRDMVV 49 (351)
T ss_pred EEEECCHHHHHHHHHHCCC
T ss_conf 9995899999999985824
No 408
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=79.99 E-value=3.7 Score=19.09 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 774189972763020147665318999999999659806996068
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCN 661 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~N 661 (1162)
+.++|+|+|+|+.- -.-.+.++.-...||+.+=+-.+
T Consensus 143 n~r~v~IvG~~~~~--------~~l~~~i~~~p~~G~~vvG~~dd 179 (464)
T PRK10124 143 NTRMVAVAGDLPAG--------QMLLESFRNQPWLGFEVVGVYHD 179 (464)
T ss_pred CCEEEEEECCCHHH--------HHHHHHHHHCCCCCCEEEEEECC
T ss_conf 84389998388899--------99999997296679669999668
No 409
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=79.99 E-value=3.7 Score=19.09 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=67.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCEEECCCCCCCC--EEECCCCHHHHHHHHHHHCC
Q ss_conf 699997677542050546668889999999987--97899974876501078451310--04337999999999986289
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEE--GYRIILVNSNPATIMTDPDLADA--TYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~--Gi~vVlVNsNpaTi~TD~~~aD~--vY~ePlt~e~v~~Ii~~E~p 83 (1162)
.||-+||.|.| |....++|++. +++.+.|.+.. ++-+.. ....+.....+.+.+ ++|
T Consensus 2 ~rVgiIG~GaI-----------G~~Va~~l~~g~~~~~L~~V~~r~------~~~a~~~a~~~~~~~~~~ld~l~--~~~ 62 (265)
T PRK13304 2 LKIGIVGCGAI-----------ANLITKAIDSGRINAELLAFYDRN------LEKAENLAEKTGAPACLSIDELV--KDV 62 (265)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHCCCCCEEEEEEECCC------HHHHHHHHHCCCCCCCCCHHHHH--HCC
T ss_conf 49999865789-----------999999986799864999997898------78988776415997127989983--389
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 889975887026888899887596288287571499899986058899999999878
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIP 140 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~g 140 (1162)
|-|+=.=|-+---..+....++|. .++-.|+-++-..+=++...++..+.|
T Consensus 63 DlVVE~A~~~av~~~~~~~L~~G~------dlvv~SvGALaD~~l~~~L~~~A~~~g 113 (265)
T PRK13304 63 DLVVECASQKAVEDTVPKSLNNGK------DVIIMSVGALADKELFLKLYKLAKENG 113 (265)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC------CEEEECHHHHCCHHHHHHHHHHHHHCC
T ss_conf 999989898999999999997599------899981368559899999999997379
No 410
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.92 E-value=2.5 Score=20.45 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 99998653379988999885899999998898639847998621432443665855897206776665532235677741
Q gi|254780439|r 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSEDKVSDRKK 620 (1162)
Q Consensus 541 ~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY~~e~~~~~~~e~~~~~~kk 620 (1162)
+.+..|+..|..+..+-++.+.....-.+.|.+-+|--.---|- .+++-.. ..-.....++
T Consensus 116 ~Ay~~A~~~~~~g~~L~~lfq~A~~~aKrVRteT~I~~~~vSi~-~~~~~~~------------------~~~~~~~~~~ 176 (338)
T PRK00676 116 RAYLKAARERELPFALHFLFQKALKEGKVFRSKGGAPYAEVTIE-SVVQEEL------------------RRRQKSKKAS 176 (338)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHH-HHHHHHH------------------HHHCCCCCCE
T ss_conf 99999998098058999999999998755210357798875199-9999999------------------8637867886
Q ss_pred EEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89972763020147665318999999999659806996068
Q gi|254780439|r 621 IVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCN 661 (1162)
Q Consensus 621 viVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~N 661 (1162)
+|++|.|-. +-.+++.|.+.|++.|.|-|.
T Consensus 177 vLvIGaGem-----------~~l~~k~L~~~g~~~i~v~NR 206 (338)
T PRK00676 177 LLFIGYSEI-----------NRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCCEEEEECC
T ss_conf 999866299-----------999999998769997999886
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=79.78 E-value=3.7 Score=19.04 Aligned_cols=77 Identities=4% Similarity=-0.033 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02688889988759628828757149989998605889999999987898886200023443333323333333444444
Q gi|254780439|r 93 QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKT 172 (1162)
Q Consensus 93 qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1162)
.|+=.||..|.+.+ +-+++=...++-+ +.-.++.+...+++++|+-.+....
T Consensus 115 TT~aKLA~~lk~k~-----~k~vllvaaDt~R-paA~eQL~~la~~~~v~~~~~~~~~---------------------- 166 (453)
T PRK10867 115 TSVGKLGKFLREKH-----KKKVLVVSADVYR-PAAIKQLETLAEQVGVDFFPSDVGQ---------------------- 166 (453)
T ss_pred HHHHHHHHHHHHCC-----CCEEEEECCCCCH-HHHHHHHHHHHHHCCCCEECCCCCC----------------------
T ss_conf 58999999999738-----9837985588770-5899999999985198043678899----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4433332221111112334444444554448999999999871996999413
Q gi|254780439|r 173 LSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPS 224 (1162)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps 224 (1162)
.++.-...|++.|..-||-|+|=-.
T Consensus 167 ---------------------------dp~~ia~~a~~~ak~~~~DvvivDT 191 (453)
T PRK10867 167 ---------------------------KPVDIVNAALKEAKLKFYDVLLVDT 191 (453)
T ss_pred ---------------------------CHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ---------------------------8899999999999977999999978
No 412
>PRK07045 putative monooxygenase; Reviewed
Probab=79.56 E-value=2.8 Score=20.01 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5569999767754205054666888999999998797899974876
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
+--+|+|+|+||- |.-+..+|...|++++++-..|
T Consensus 4 ~~~dVlIvGaG~a-----------Gl~lA~~L~r~G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIA-----------GVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred CCCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 9985899992889-----------9999999986799899990899
No 413
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=79.50 E-value=2.6 Score=20.24 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=28.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
.|+|||+|-+ |..+...|.+.|++|++|..++
T Consensus 1 dv~IIGaGi~-----------Gls~A~~La~~G~~V~vie~~~ 32 (309)
T pfam01266 1 DVVVIGGGIV-----------GLSTAYELARRGLSVTLLERGD 32 (309)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999992799-----------9999999997899599994999
No 414
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.24 E-value=3.4 Score=19.32 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHCCCCHHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 76079824899-99999973897889987718898999999999
Q gi|254780439|r 482 AISIPCPDRLR-TVAQALRLGVSVEETHQSSNIDPWFIQQIKMI 524 (1162)
Q Consensus 482 ~L~~p~~~Rl~-~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~i 524 (1162)
.+.-|...-|. .++-|++.|.+++++.+...++|=+-+-+++=
T Consensus 408 ~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A 451 (462)
T PRK06416 408 HMVGAEASELIQEAQLAINLEATVEDLALTIHPHPTLSEALMEA 451 (462)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99889999999999999988498999941787798889999999
No 415
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=79.19 E-value=3.7 Score=19.01 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=29.3
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 977665569999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||..-| |+|||||.- |.-|..+..|.|.+|++|---|
T Consensus 1 ~~~~VD---VvVVG~G~A-----------Gl~AAi~Aae~Ga~V~llEK~~ 37 (456)
T PRK08274 1 MAAMVD---VLVIGGGNA-----------ALCAALAAREAGASVLLLEAAP 37 (456)
T ss_pred CCCCCC---EEEECCCHH-----------HHHHHHHHHHCCCEEEEEEEEC
T ss_conf 997388---899998899-----------9999999998799099998327
No 416
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=79.12 E-value=1.8 Score=21.49 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEECCC--CCCCCEE--ECCCCH-HHHHHHHHH-----HCCCEE
Q ss_conf 8889999999987978999748765010784--5131004--337999-999999986-----289889
Q gi|254780439|r 28 YSGTQACKALKEEGYRIILVNSNPATIMTDP--DLADATY--TEPITP-EVVAKIIEK-----ERPDAI 86 (1162)
Q Consensus 28 ys~~qa~~alke~Gi~vVlVNsNpaTi~TD~--~~aD~vY--~ePlt~-e~v~~Ii~~-----E~pDaI 86 (1162)
=+-.++++.||..|+||.++-+|-. ||+ .||..-- +-|... ..=..++|- -|||+=
T Consensus 108 p~m~~~i~~~~~~Gfkt~~lTNN~~---l~~GPGmaq~~~~~~~p~~~~~~FD~VvESc~~G~~KPD~r 173 (228)
T TIGR02247 108 PEMVKAIKSLRAKGFKTALLTNNFY---LDKGPGMAQEAEEALLPSDVMALFDEVVESCLEGLRKPDPR 173 (228)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC---CCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHH
T ss_conf 7899999999757775888616730---56776401220466113667644106556636078899767
No 417
>PRK02141 Maf-like protein; Reviewed
Probab=79.10 E-value=3.9 Score=18.89 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=15.7
Q ss_pred CEEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 63798416788999999874856782279984
Q gi|254780439|r 673 DRLYFESLTEEDILEILRVEQQKGELVGIIVQ 704 (1162)
Q Consensus 673 DrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q 704 (1162)
.++.|.+||-+.+.+-++.+.|.+..=++..|
T Consensus 133 t~V~f~~ls~~eI~~Yv~~~ep~~kAG~Y~ie 164 (206)
T PRK02141 133 TRVRFRTLTDAELDAYLRAETPYDVAGSAKSE 164 (206)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99998899999999999749811061799880
No 418
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.09 E-value=2.5 Score=20.39 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=26.1
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99976775420505466688899999999879789997487
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
|||||||.- |.-|.-.+++.|.+|++|.--
T Consensus 8 VlVIG~G~A-----------Gl~AAi~a~~~G~~V~lv~K~ 37 (566)
T PRK06452 8 AVIIGAGLA-----------GLMAAHEIASAGYSVAVISKV 37 (566)
T ss_pred EEEECCCHH-----------HHHHHHHHHHCCCCEEEEECC
T ss_conf 899997499-----------999999998779978999788
No 419
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=79.09 E-value=3.9 Score=18.88 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH---------------HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH-
Q ss_conf 999999973897889987718898999999999---------------9999987530376027999986533799889-
Q gi|254780439|r 492 RTVAQALRLGVSVEETHQSSNIDPWFIQQIKMI---------------VDVEHRIREHGLPKDFQNLQAIKAMGFSDAR- 555 (1162)
Q Consensus 492 ~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~i---------------v~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~- 555 (1162)
-+|-+-+...+++++|++..++.+|+|.++-.= -...+.|... +..+..-|.+.||+|..
T Consensus 16 ~yI~~n~~~~lsl~~lA~~~~~S~~~l~r~Fk~~~G~s~~~Yi~~~Rl~~A~~lL~~t----~~~I~~IA~~~Gf~~~~~ 91 (127)
T PRK11511 16 DWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKES----NEPILYLAERYGFESQQT 91 (127)
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHCCCCHHH
T ss_conf 9999865899999999999895999999999999891999999999999999999985----998999999968998899
Q ss_pred ----HHHHHCCCHHHHHHHHHHCCCEE
Q ss_conf ----99885899999998898639847
Q gi|254780439|r 556 ----LSILSGIPCNEIRKIRHQMGLHP 578 (1162)
Q Consensus 556 ----IA~l~~~~e~~Vr~~R~~~~i~P 578 (1162)
--+..|+++.+-|+....-.-+|
T Consensus 92 F~r~Fkk~~G~tP~~yR~~n~~~~~~~ 118 (127)
T PRK11511 92 LTRTFKNYFDVPPHKYRMTNMQGESRF 118 (127)
T ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCC
T ss_conf 999999988909999997727787665
No 420
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=78.94 E-value=3.4 Score=19.31 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=27.4
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCC
Q ss_conf 77741899727630201476653189999999996598069-960686521
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETI-MINCNPETV 665 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tI-mIN~NPETV 665 (1162)
...++++|||+|. .+--++.+|.++|.+.| ++|-|++..
T Consensus 120 ~~~k~vlIlGaGG-----------aarai~~al~~~g~~~i~i~nR~~~~a 159 (275)
T PRK00258 120 LKGKRILLLGAGG-----------AARAVILPLLELGVAEITIVNRTVERA 159 (275)
T ss_pred CCCCEEEEECCCC-----------HHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 5687599988871-----------079999999976999899995899999
No 421
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.84 E-value=3.8 Score=18.96 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=26.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 977665569999767754205054666888999999998797899974
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVN 48 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVN 48 (1162)
|..+ -.||+|+|+|.+ |+--.--|.+.|.+|.+|-
T Consensus 1 M~~~--~~kI~IiGaGAi-----------G~~~a~~L~~aG~~V~li~ 35 (313)
T PRK06249 1 MDSE--TPRIAIIGTGAI-----------GGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CCCC--CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEE
T ss_conf 9999--888999991499-----------9999999996699569996
No 422
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=78.68 E-value=1.9 Score=21.26 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=23.2
Q ss_pred HHHHHHHCCCEEEEECCCCCE-EECCCCCCCCEEECC
Q ss_conf 999999879789997487650-107845131004337
Q gi|254780439|r 33 ACKALKEEGYRIILVNSNPAT-IMTDPDLADATYTEP 68 (1162)
Q Consensus 33 a~~alke~Gi~vVlVNsNpaT-i~TD~~~aD~vY~eP 68 (1162)
|.++.|..|-+||.|-|||.+ ++++.|.+-++-..|
T Consensus 145 aL~yAr~~Ga~Ti~iacnp~S~~s~~Ad~~I~~~vGP 181 (291)
T TIGR00274 145 ALEYARKLGAKTIAIACNPESAVSKQADVAIEVIVGP 181 (291)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECC
T ss_conf 9999997078257774177422312144300232044
No 423
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=78.59 E-value=3.7 Score=19.00 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHH-----------
Q ss_conf 982489999999973897889987718898999999999999998753037602799998653379988-----------
Q gi|254780439|r 486 PCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDA----------- 554 (1162)
Q Consensus 486 p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~----------- 554 (1162)
--=.|+-.+++-|..-.. .+.+++|.=-|.+|..=+.-.+..++.--. .......+.+.+.|=
T Consensus 380 gGy~r~~q~a~~l~~~~~----~~~~~vd~~~l~~l~~~~~~~~~~~K~~k~--~~~rk~~~~lpl~DC~~APC~~aCP~ 453 (1012)
T TIGR03315 380 GGYLRLNQCANELETSEY----WGMGHVDLDKLAQLAAKALTDEYTQKEWRP--VESRKLRKTLPLTDCYVAPCTTGCPI 453 (1012)
T ss_pred CCHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHCCHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 627999999999874023----455676899999999874237545155778--77655589988665787810127999
Q ss_pred ------HHHHHHCCCHHHHHHHHHHCCCEEEE-EEE--CCCCCCCCC---CCCEEE-------EECCCCCCCCC-CCCCC
Q ss_conf ------99988589999999889863984799-862--143244366---585589-------72067766655-32235
Q gi|254780439|r 555 ------RLSILSGIPCNEIRKIRHQMGLHPVF-KCV--DTCAGEFSS---PTSYMY-------STYETNFINKP-VSEDK 614 (1162)
Q Consensus 555 ------~IA~l~~~~e~~Vr~~R~~~~i~P~y-K~V--DtcAgEF~a---~T~Y~Y-------sTY~~e~~~~~-~~e~~ 614 (1162)
.|+.+..-...+-.+.-.+.+-.|.. =+| -.|-+.=.- ..|--- +-+..+..... .....
T Consensus 454 ~~DIP~YI~lI~eG~y~eAl~vI~e~NplPaicGRVCph~CE~~C~R~~~D~PV~Ir~LKRfaad~~~e~~~~~~~~p~~ 533 (1012)
T TIGR03315 454 NQDIPEYIRLVGEKRYLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQG 533 (1012)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 89889999999879999999999875882457766657520786227889988066689999997666641554678988
Q ss_pred CCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 67774189972763020147665318999999999659806996068652
Q gi|254780439|r 615 VSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPET 664 (1162)
Q Consensus 615 ~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPET 664 (1162)
.+++|||-|+||||= .--|+.-|+..||++.+---.|+-
T Consensus 534 ~~~gkKVAVIGsGPA-----------GLaAA~~Lar~Gh~VTVFEk~~~~ 572 (1012)
T TIGR03315 534 KSSAHKVAVIGAGPA-----------GLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCCCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 789988999897789-----------999999999779956998158978
No 424
>PRK06844 consensus
Probab=78.58 E-value=4 Score=18.77 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=12.6
Q ss_pred CEEEEEEECCCC--CHHHHHHHHHHCCCH
Q ss_conf 849998504443--103578887634614
Q gi|254780439|r 346 GKMVVIEMNPRV--SRSSALASKATGFPI 372 (1162)
Q Consensus 346 ~~~yvIEvNpR~--sRssalaskatgypi 372 (1162)
.++|+-|-.||+ +|-.++--.--|.|.
T Consensus 188 ~~V~~~ETRP~lQGaRLTa~EL~~~gIp~ 216 (341)
T PRK06844 188 FKVYSDETRPRLQGSTLTALELQRAGIDV 216 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 58875577602210777999997669975
No 425
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.51 E-value=3.3 Score=19.45 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCC
Q ss_conf 7741899727630201476653189999999996598069-96068652
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETI-MINCNPET 664 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tI-mIN~NPET 664 (1162)
..++++|||+|. .+--++.+|++.|+..| ++|-|++.
T Consensus 121 ~~~~~lilGaGG-----------aarai~~aL~~~G~~~i~I~nR~~~~ 158 (272)
T PRK12550 121 PDAVVALRGSGG-----------MAKAVAAALRDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 677389973623-----------38999999997699879999899899
No 426
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=78.49 E-value=3.8 Score=18.99 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHCCCCHHHHHH-HHHHHHCCCCHHHHHHHHC-CCHHHHHHHHH
Q ss_conf 760798248999-9999973897889987718-89899999999
Q gi|254780439|r 482 AISIPCPDRLRT-VAQALRLGVSVEETHQSSN-IDPWFIQQIKM 523 (1162)
Q Consensus 482 ~L~~p~~~Rl~~-i~eAlr~G~sv~ei~elT~-Id~wFl~~i~~ 523 (1162)
++.-|+..-|.. ++-|++.|++++++.+.+. .+|=+-+-|++
T Consensus 403 ~ivg~~A~ElI~~~alai~~~~t~~dla~~~~~~HPT~sE~i~~ 446 (453)
T PRK07846 403 HIIGPQASTLIQPLIQAMSFGLTAREMARGQYWIHPALPEVVEN 446 (453)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99889999999999999987795999941886679962899999
No 427
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=78.38 E-value=4.1 Score=18.73 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=18.4
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 00433799999999998628988997588702688889988
Q gi|254780439|r 63 ATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLK 103 (1162)
Q Consensus 63 ~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~ 103 (1162)
..|++=-|.+.+.+-|+.=..-|= |..|---|+-++..+.
T Consensus 38 ~~~v~~~t~~dv~~AIk~M~VRGA-PaIgiaAAyGlaLaa~ 77 (365)
T PRK05772 38 TRYVEARTVEEVADAIRNMVVRGA-PAIGITAAFGMVLALL 77 (365)
T ss_pred EEEEEECCHHHHHHHHHHCEECCH-HHHHHHHHHHHHHHHH
T ss_conf 799994899999998673811690-7999999999999997
No 428
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.28 E-value=4.1 Score=18.71 Aligned_cols=69 Identities=23% Similarity=0.344 Sum_probs=40.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE--ECCCCHHHHHHHHHHH-CCC
Q ss_conf 6999976775420505466688899999999879789997487650107845131004--3379999999999862-898
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY--TEPITPEVVAKIIEKE-RPD 84 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY--~ePlt~e~v~~Ii~~E-~pD 84 (1162)
|.+||-|++- -| |...++.|-++|.+|+.++.++.. ..++++. -.-++-+.+.++++.. ++|
T Consensus 6 K~alVTGas~-GI---------G~aia~~~a~~Ga~V~~~d~~~~~-----~~~~~~~~~~~Dv~~~~v~~~~~~~g~iD 70 (237)
T PRK06550 6 KTVLVTGAAS-GI---------GLAQARAFLEQGAHVYGVDKSDKP-----DLSGNFHFIQLDLSSDKLEPLFKVVPSVD 70 (237)
T ss_pred CEEEEECCCC-HH---------HHHHHHHHHHCCCEEEEEECCHHH-----HCCCCEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 8999937477-99---------999999999879999997086124-----30697389986388899999999759997
Q ss_pred EEEECCC
Q ss_conf 8997588
Q gi|254780439|r 85 AILPTTG 91 (1162)
Q Consensus 85 aIlp~~G 91 (1162)
.++-.-|
T Consensus 71 iLvNnAG 77 (237)
T PRK06550 71 ILCNTAG 77 (237)
T ss_pred EEEECCC
T ss_conf 9998988
No 429
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=78.11 E-value=4.1 Score=18.67 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=18.2
Q ss_pred ECCCCCCCCEE-ECCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 07845131004-33799999999998628988997588
Q gi|254780439|r 55 MTDPDLADATY-TEPITPEVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 55 ~TD~~~aD~vY-~ePlt~e~v~~Ii~~E~pDaIlp~~G 91 (1162)
+|+-+-.|-+| =+.--.+.|.++.++.+|+.|...-+
T Consensus 46 ~T~l~E~d~v~Gg~~kL~~~i~~~~~~~~p~~I~v~~t 83 (398)
T pfam00148 46 STDLTEKDVVFGGEEKLEEAIREADKRYKPKAIFVYTT 83 (398)
T ss_pred ECCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 24688333125859999999999997359978999756
No 430
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=78.05 E-value=3.2 Score=19.51 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHH-----------
Q ss_conf 982489999999973897889987718898999999999999998753037602799998653379988-----------
Q gi|254780439|r 486 PCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDA----------- 554 (1162)
Q Consensus 486 p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~----------- 554 (1162)
--=.|+-.+++-|..-.. .+.+++|.--|.++..=+.-.+..++.-- ........+.+.+.|=
T Consensus 393 gGy~r~~q~a~~l~~~~~----~~~~~vd~~~l~~l~~~~~~~~~~~K~~k--~~~~rk~~~~lpl~DC~~APC~~aCP~ 466 (1032)
T PRK09853 393 GGYLRLSQCARELEGSDA----WGLDHVDVERLNRLAADALTMEYTQKHWR--PEESIKVAEDLPLTDCYVAPCVTACPI 466 (1032)
T ss_pred CCHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHCCHHHHCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 627999999999874023----45567789999999987423754515577--876655589988765787821247999
Q ss_pred ------HHHHHHCCCHHHHHHHHHHCCCEEEE-EEEC--CCCCC-----------------CCCCCCEEEEECCCCCCCC
Q ss_conf ------99988589999999889863984799-8621--43244-----------------3665855897206776665
Q gi|254780439|r 555 ------RLSILSGIPCNEIRKIRHQMGLHPVF-KCVD--TCAGE-----------------FSSPTSYMYSTYETNFINK 608 (1162)
Q Consensus 555 ------~IA~l~~~~e~~Vr~~R~~~~i~P~y-K~VD--tcAgE-----------------F~a~T~Y~YsTY~~e~~~~ 608 (1162)
.|+.+..-...+-.+.-.+.+-.|.. =+|= .|-+. |.+.. -|-.|.. .
T Consensus 467 ~~dIP~YI~lI~eG~y~eAl~vI~e~NplPaIcGRVCph~CE~~C~R~~~depVaIr~LKRfaad~--~~e~~~~----~ 540 (1032)
T PRK09853 467 NQDIPEYIRLVGEKRYAEALELIYQRNALPAITGHICDHQCQYNCTRLDYDEALNIREMKKVALEK--GWDEYKQ----R 540 (1032)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCCCEEECHHHHHHHHH--HHHHCCC----C
T ss_conf 998899999998799999999998868813476655474027860058899873656889999875--6664155----4
Q ss_pred CCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 5322356777418997276302014766531899999999965980699606865
Q gi|254780439|r 609 PVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 609 ~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
.........+|||-|+|||| ..--|+.-|+..||++.+---.|+
T Consensus 541 ~~~p~~~~tgKKVAVIGsGP-----------AGLaAA~~Lar~Gh~VTVFEk~~~ 584 (1032)
T PRK09853 541 WHKPAGSGSRHPVAVIGAGP-----------AGLAAGYFLARAGHPVTVFEREEN 584 (1032)
T ss_pred CCCCCCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 56888778899799989688-----------999999999977993699815897
No 431
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.01 E-value=4.2 Score=18.65 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHCCCCHHHHHH-HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9760798248999-999997389788998771889899999999999
Q gi|254780439|r 481 SAISIPCPDRLRT-VAQALRLGVSVEETHQSSNIDPWFIQQIKMIVD 526 (1162)
Q Consensus 481 ~~L~~p~~~Rl~~-i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~ 526 (1162)
-++.-|...-|.. +.-|++.|.+++++.+...++|=|=+-|.+-.+
T Consensus 410 a~ivG~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~i~~Aa~ 456 (472)
T PRK06467 410 GAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (472)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99988999999999999998869899994078779888999999999
No 432
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.93 E-value=4 Score=18.76 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCCCCCCC---EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 97766556---9999767754205054666888999999998797899974876
Q gi|254780439|r 1 MPKRQDLK---TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 1 MP~~~dik---kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+-+=|. -|||||||.- |..|.-.++|.|.+|++|.-.+
T Consensus 3 ~~~~~~~d~e~DVlVIGsG~A-----------GL~AAi~a~~~G~~V~li~K~~ 45 (598)
T PRK09078 3 MSAYKIIDHKYDVVVVGAGGA-----------GLRATLGMAEAGLRTACITKVF 45 (598)
T ss_pred CCCCCCCCCCCCEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCC
T ss_conf 776665566379899995699-----------9999999987499079997889
No 433
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.79 E-value=4.2 Score=18.61 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHCCCCHHHHHH-HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 760798248999-99999738978899877188989999999999
Q gi|254780439|r 482 AISIPCPDRLRT-VAQALRLGVSVEETHQSSNIDPWFIQQIKMIV 525 (1162)
Q Consensus 482 ~L~~p~~~Rl~~-i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv 525 (1162)
.+.-|...-|.. +.-|++.|.+++++.+...++|=+-+-|++-.
T Consensus 413 ~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A~ 457 (467)
T PRK07818 413 HLVGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALQEAF 457 (467)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 998899999999999999883989999406778988799999999
No 434
>PRK06475 salicylate hydroxylase; Provisional
Probab=77.76 E-value=3.4 Score=19.38 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=29.6
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
..|+|+|+||- |--+..+|+..|+++.++-..|.
T Consensus 3 ~~VlIVGaGia-----------GL~~A~~L~~~G~~v~V~E~~~~ 36 (400)
T PRK06475 3 GSILIAGAGVA-----------GLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 97999895889-----------99999999978999999917998
No 435
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=77.56 E-value=3.4 Score=19.38 Aligned_cols=174 Identities=19% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHCCCC------CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 999999999987530376------02799998653379988999885899999998898639847998621432443665
Q gi|254780439|r 520 QIKMIVDVEHRIREHGLP------KDFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSP 593 (1162)
Q Consensus 520 ~i~~iv~~e~~l~~~~~~------~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~ 593 (1162)
-++|+..+-.-|-..-+- .-++....|++.|+++..+-.+.+.....=.+.|.+-+|--.=--|-.-|=+...
T Consensus 92 Av~HLfrVAsGLDSmVlGE~QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~- 170 (414)
T COG0373 92 AVRHLFRVASGLDSLVLGETQILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAK- 170 (414)
T ss_pred HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 9999999860523664486999999999999999819852899999999998777641014778886123999999999-
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCC
Q ss_conf 85589720677666553223567774189972763020147665318999999999659806996-06865211232458
Q gi|254780439|r 594 TSYMYSTYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI-NCNPETVSTDYDIA 672 (1162)
Q Consensus 594 T~Y~YsTY~~e~~~~~~~e~~~~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI-N~NPETVSTDyd~s 672 (1162)
..-..-.+++++|+|.|- +..-+++.|.+.|+.-|+| |=++|.. .+.+
T Consensus 171 -----------------~~~~~L~~~~vlvIGAGe-----------m~~lva~~L~~~g~~~i~IaNRT~erA---~~La 219 (414)
T COG0373 171 -----------------RIFGSLKDKKVLVIGAGE-----------MGELVAKHLAEKGVKKITIANRTLERA---EELA 219 (414)
T ss_pred -----------------HHHCCCCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCCHHHH---HHHH
T ss_conf -----------------983654467699986518-----------999999999858987799975878999---9999
Q ss_pred CEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHH-----
Q ss_conf 637984167889999998748567822799844512466898888875983861275203310286789998887-----
Q gi|254780439|r 673 DRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLME----- 747 (1162)
Q Consensus 673 DrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~----- 747 (1162)
+++=-+.++++ .+...|.++.+-|-+|+....-. .++.+...++.
T Consensus 220 ~~~~~~~~~l~----------------------------el~~~l~~~DvVissTsa~~~ii--~~~~ve~a~~~r~~~l 269 (414)
T COG0373 220 KKLGAEAVALE----------------------------ELLEALAEADVVISSTSAPHPII--TREMVERALKIRKRLL 269 (414)
T ss_pred HHHCCEEECHH----------------------------HHHHHHHHCCEEEEECCCCCCCC--CHHHHHHHHHCCCCEE
T ss_conf 98387022187----------------------------78876520799999069985540--7888998874116759
Q ss_pred -CCCCCCCC
Q ss_conf -09866854
Q gi|254780439|r 748 -LDLNQPRN 755 (1162)
Q Consensus 748 -l~i~~p~~ 755 (1162)
.+|.+|+.
T Consensus 270 ivDiavPRd 278 (414)
T COG0373 270 IVDIAVPRD 278 (414)
T ss_pred EEEECCCCC
T ss_conf 998269999
No 436
>PRK10015 hypothetical protein; Provisional
Probab=77.50 E-value=3.4 Score=19.38 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 5699997677542050546668889999999987978999748
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNS 49 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNs 49 (1162)
.=-|+|+|+||- |+-|...|.+.|.+|+++--
T Consensus 5 ~fDVIVVGaGPA-----------G~sAA~~LAk~Gl~VlllEr 36 (429)
T PRK10015 5 KFDAIVVGAGVA-----------GSVAALVMARAGLDVLVIER 36 (429)
T ss_pred CCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEC
T ss_conf 158899996889-----------99999999877991999967
No 437
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=77.44 E-value=4.3 Score=18.53 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=55.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 69999767754205054666888999999998797899974876501078451310043379999999999862898899
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
+.++||..|... +-+.+|++.|+++||.+=+||. ..+-|+..+.+.+.+++.+.--++
T Consensus 10 ~di~ii~~G~~~--------~~al~aa~~L~~~gi~~~vid~--------------~~ikPlD~~~i~~~~~~~~~vvtv 67 (124)
T pfam02780 10 DDVTIVAYGSMV--------HEALEAAEELAAEGISAEVIDL--------------RTVKPLDEDTILESVKKTGRLVVV 67 (124)
T ss_pred CCEEEEECCHHH--------HHHHHHHHHHHHCCCCEEEEEE--------------EEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 979999847899--------9999999998775985699742--------------364366789999987334868998
Q ss_pred E---CCCCCHHHHHHHHHHHCCCHH-HHCCEEECCCHHHHH
Q ss_conf 7---588702688889988759628-828757149989998
Q gi|254780439|r 88 P---TTGGQTALNTALSLKRMGVLD-RYGVEMIGAKPETID 124 (1162)
Q Consensus 88 p---~~GGqtalnl~~~L~e~gil~-~~~v~~lG~~~~~I~ 124 (1162)
- ..||-- =-++..|.++|+.. +..+.-+|.+-.-|.
T Consensus 68 Ee~~~~gG~G-s~i~~~l~e~~~~~l~~~v~~ig~pd~~ip 107 (124)
T pfam02780 68 EEAVPRGGFG-AEVAAALAEEGFDYLDAPVLRVGGPDTPIP 107 (124)
T ss_pred ECCCCCCCHH-HHHHHHHHHHCHHHCCCCEEEECCCCCCCC
T ss_conf 4688678689-999999998566544999699747989899
No 438
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.41 E-value=4.3 Score=18.53 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=44.6
Q ss_pred EEECCCCCCCCHHHHHHC--------------CCEEEEEECCCCCC------CC-------------CCHHHHHHHHHHC
Q ss_conf 975056878107889867--------------98549996789985------23-------------1108999999970
Q gi|254780439|r 1079 KINKVLEGRPHIEDAISN--------------RQVHLVINTTEGKK------AI-------------EDSKSLRRATLIR 1125 (1162)
Q Consensus 1079 ~v~k~~e~~~~i~d~i~~--------------~~i~lVINt~~~~~------~~-------------~dg~~iRr~Ai~~ 1125 (1162)
.=+|-+||.|++-..+|+ -+-|+||.-|.... .. .-..+||..|-++
T Consensus 229 dE~K~sEGdPeVKsr~Rq~~re~a~~rm~~~Vp~AdvVItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~ 308 (363)
T COG1377 229 DEYKQSEGDPEVKSRIRQMQREIARRRMMSDVPKADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEH 308 (363)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 99861569805668999999999999998518998889727661134546655558999899817869999999999984
Q ss_pred CCCEEECHHHHHHHHHH
Q ss_conf 99799459999999999
Q gi|254780439|r 1126 KIPYYTTIAGADAVFQA 1142 (1162)
Q Consensus 1126 ~ip~~T~~~~a~a~~~a 1142 (1162)
+||.+.+...|+++-..
T Consensus 309 ~Ipi~enppLARaLY~~ 325 (363)
T COG1377 309 GIPIIENPPLARALYRQ 325 (363)
T ss_pred CCCEECCHHHHHHHHHH
T ss_conf 99564180779999972
No 439
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=77.40 E-value=4.3 Score=18.53 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=34.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEE
Q ss_conf 775420505466688899999999879789997487650107845131004
Q gi|254780439|r 15 AGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATY 65 (1162)
Q Consensus 15 sGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY 65 (1162)
||...||...|+= .+.-..+||++.|++|-+|.+ +.|.|.-.+++
T Consensus 30 SG~~HIGn~rEv~-~~~~V~ral~~~g~~~~~i~~-----~DD~D~lRKVp 74 (354)
T cd00674 30 SGLIHIGNFREVV-TADAVRRALRDLGFEVRLIYS-----WDDYDPLRKVP 74 (354)
T ss_pred CCCCCCCCCCHHH-HHHHHHHHHHHCCCCEEEEEE-----EECCCHHCCCC
T ss_conf 9886320550178-899999999975996799998-----40555100375
No 440
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=77.39 E-value=4 Score=18.81 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=42.1
Q ss_pred ECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 505687810788986798549996789985231108999999970997994599999999999
Q gi|254780439|r 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVFQAI 1143 (1162)
Q Consensus 1081 ~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al 1143 (1162)
.|+-.|...+.+.|+++++.|||=-.+.+ ..-..++++.|-.++||++..... ..+-.|+
T Consensus 16 gklvsG~~~v~~~ik~~k~~LVi~A~Das--~~tkkk~~~~c~~~~Vp~~~~~tk-~eLg~ai 75 (104)
T PRK05583 16 GKLLEGYNKCEEAVKKNKIYLFIISNDIS--ENSKNKFKKYCEKYNIPYIESFSK-EELGYAL 75 (104)
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEEECCCC--HHHHHHHHHHHHCCCCCEEEECCH-HHHHHHH
T ss_conf 76031689999999949857999956778--658999999985369888985389-9999985
No 441
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=77.28 E-value=3.9 Score=18.88 Aligned_cols=71 Identities=21% Similarity=0.415 Sum_probs=45.3
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCEEECCCCCCCC---EEECCCCH-----HHHHHHH
Q ss_conf 999976775420505466688899999999879789997487--6501078451310---04337999-----9999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN--PATIMTDPDLADA---TYTEPITP-----EVVAKII 78 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN--paTi~TD~~~aD~---vY~ePlt~-----e~v~~Ii 78 (1162)
||+|||+|=+ |......|.+.|.+|++|..+ |+. .|+..-|-. -|..|+.. ..+....
T Consensus 2 ~VvIIGaGi~-----------G~stA~~La~~G~~V~vler~~~~~~-~~S~~naG~i~~~~~~p~~~pg~~~~~~~~l~ 69 (416)
T PRK00711 2 RVVVLGSGVV-----------GVTSAWYLARAGHEVTVIDRQPGPAL-ETSFANAGQISPGYAAPWAAPGVPLKAIKWLF 69 (416)
T ss_pred EEEEECCHHH-----------HHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7999994499-----------99999999968996899969999853-13513460016421356457642788888862
Q ss_pred HHHCCCEEEECCC
Q ss_conf 8628988997588
Q gi|254780439|r 79 EKERPDAILPTTG 91 (1162)
Q Consensus 79 ~~E~pDaIlp~~G 91 (1162)
.+..|-.+.|...
T Consensus 70 ~~~~pl~~~~~~~ 82 (416)
T PRK00711 70 QRHAPLAIRPDGD 82 (416)
T ss_pred CCCCCCEECCCCC
T ss_conf 7898706257769
No 442
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=77.26 E-value=4.3 Score=18.50 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 32289889999999999999871834576468999955898499985044
Q gi|254780439|r 306 ALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP 355 (1162)
Q Consensus 306 ~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp 355 (1162)
.+.|+|++.++|.+.+.++-++.|. .+-|+|+++-.++++|++-..|
T Consensus 286 ~~~L~d~~~~~L~~~~~~LE~hyg~---pQDIEwaie~~~GkL~iLQtRP 332 (794)
T PRK06464 286 RFSLTDEEVLELAKQAVIIEKHYGR---PMDIEWAKDGVDGKLYIVQARP 332 (794)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCEEEEEECCC
T ss_conf 4589989999999999999998388---7401555506788089996063
No 443
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.21 E-value=4.4 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=12.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 99844512466898888875983861275
Q gi|254780439|r 701 IIVQFGGQTPLKLSKILEKNQIPILGTQP 729 (1162)
Q Consensus 701 vi~q~gGqt~~~la~~L~~~gv~ilGts~ 729 (1162)
||.-.++....+..+.+-+.|++.+-|+.
T Consensus 72 VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 72 VINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99928705429999999985998897546
No 444
>PRK07538 hypothetical protein; Provisional
Probab=77.16 E-value=4.1 Score=18.69 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=27.6
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+|+|+||- |--+..+|+..|++++++-..|
T Consensus 2 ~V~IvGaG~a-----------GL~lA~~L~~~Gi~v~V~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIG-----------GLTLALTLHQRGIEVEVFEAAP 33 (413)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCC
T ss_conf 8999990589-----------9999999997899989993699
No 445
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=77.14 E-value=4 Score=18.75 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999987530376027999986533799889998858999999988
Q gi|254780439|r 521 IKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNEIRKI 570 (1162)
Q Consensus 521 i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~ 570 (1162)
.....++...|..-+ ....+.+.-....|+|-..||..+|+++..|+..
T Consensus 118 ~e~~~~l~~al~~Lp-~~~R~vl~L~~~egls~~EIA~~lg~~~gTVKsR 166 (185)
T PRK09649 118 FEDLVEVTTMIADLT-TDQREALLLTQLLGLSYADAAAVCGCPVGTIRSR 166 (185)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 788999999998499-9999999989972999999999989399999999
No 446
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.02 E-value=3.4 Score=19.33 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 69999767754205054666888999999998797899974
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVN 48 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVN 48 (1162)
-||+|||+|.+ |+-..-.|.+.|.+|.+|-
T Consensus 3 mkI~IiGaGAv-----------G~~~a~~L~~aG~~V~lv~ 32 (341)
T PRK08229 3 ARICVLGAGSI-----------GCYLGGRLAAAGADVTLIG 32 (341)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEE
T ss_conf 77999896799-----------9999999985899879995
No 447
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.01 E-value=3.1 Score=19.68 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=26.4
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999976775420505466688899999999879789997487
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
-|||||||. +|..|.-++++.|.+|++|.--
T Consensus 10 DVlVIGsG~-----------AGL~AAi~A~~~G~~V~lv~K~ 40 (631)
T PRK07803 10 DVVVIGAGG-----------AGLRAVIEARERGLKVAVVCKS 40 (631)
T ss_pred CEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECC
T ss_conf 989999649-----------9999999998769987999789
No 448
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=76.84 E-value=3.8 Score=18.97 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 556999976775420505466688899999999879789997487
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsN 50 (1162)
|.=-|+|+|+||- |+-|...|.+.|.+|.|+---
T Consensus 4 ~~fDVIVVGAGPA-----------GsaAA~~LA~~Gl~VllLEKg 37 (428)
T PRK10157 4 DIFDAIIVGAGLA-----------GSVAALVLAREGAQVLVIERG 37 (428)
T ss_pred CCCCEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECC
T ss_conf 7577899996889-----------999999998789909999678
No 449
>KOG3895 consensus
Probab=76.77 E-value=1.9 Score=21.40 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHH---HCC-CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 9888887598386127520331028678999888---709-866854211215665556553697167513444456541
Q gi|254780439|r 713 LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLM---ELD-LNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAM 788 (1162)
Q Consensus 713 la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~---~l~-i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M 788 (1162)
|...|..+|++.+-.-......+...-.|.+|.+ ++| ...|--.. +-+-.-++....--|||.|+---.-.|.|-
T Consensus 177 lvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~q-t~yPnHK~m~s~~tyPvVVkvghahsGmGK 255 (488)
T KOG3895 177 LVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQ-TFYPNHKEMLSQPTYPVVVKVGHAHSGMGK 255 (488)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCE-EECCCCHHHCCCCCCCEEEEECCCCCCCCE
T ss_conf 9998876378642026789886145689999999987518544554400-106874422148877679982543356532
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEE-EEEECCCC
Q ss_conf 25548999999999752101322111122333333334557777456702201201001010230798499-98520110
Q gi|254780439|r 789 QIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIV-VGIIEHIE 867 (1162)
Q Consensus 789 ~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I-~gimEHiE 867 (1162)
--|.|..|+.+.-.-.. . . +--+..+-|++.--.+-|+-|..+...++ -+|.-|--
T Consensus 256 iKV~Nh~dfqDi~svva--l--------------------~-~Tyat~epFiDaKYDiriQKIG~nYKaymRtsIsgnWK 312 (488)
T KOG3895 256 IKVENHEDFQDIASVVA--L--------------------T-KTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWK 312 (488)
T ss_pred EEECCHHHHHHHHHHHH--H--------------------H-HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC
T ss_conf 55234155676999999--8--------------------8-62320023434322001565404688886653126754
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEEEECC
Q ss_conf 2152457627981686689999999999999998741335762478851-288599985244
Q gi|254780439|r 868 EAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNP 928 (1162)
Q Consensus 868 ~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVIEvNp 928 (1162)
. ..|.++. -. -.+-++-+-+...+...++---.|-|.-+. ||+.=||||||-
T Consensus 313 t---NtGSamL--EQ----IamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895 313 T---NTGSAML--EQ----IAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred C---CCHHHHH--HH----HHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHEEEECC
T ss_conf 5---7208999--99----9877889999998997628832466542105655023243123
No 450
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=76.61 E-value=4.5 Score=18.37 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=70.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEE-CCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCC
Q ss_conf 6999976775420505466688899999999879--789997-4876501078451310043379999999999862898
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG--YRIILV-NSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPD 84 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~G--i~vVlV-NsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pD 84 (1162)
-||-|||.|.+ .+..-..++++.+ .+.|.+ .+||+... ..+. -|--|.......+.++.+.+|
T Consensus 4 irvgiiG~G~~----------~~~~~~~~~~~~~~~~~~vav~d~~~~~a~---~~a~-~~~~~~~~~~~~~ll~~~~iD 69 (342)
T COG0673 4 IRVGIIGAGGI----------AGKAHLPALAALGGGLELVAVVDRDPERAE---AFAE-EFGIAKAYTDLEELLADPDID 69 (342)
T ss_pred CEEEEECCCHH----------HHHHHHHHHHHCCCCEEEEEEECCCHHHHH---HHHH-HCCCCCCCCCHHHHHCCCCCC
T ss_conf 27999898767----------888889999738874699999649989999---9999-819974529999994599998
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 89975887026888899887596288287571499899986058899999999878988
Q gi|254780439|r 85 AILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLAT 143 (1162)
Q Consensus 85 aIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~ 143 (1162)
+|....--++=..++....+.|. .+|--.|=+....|=+ ...++.++.|..+
T Consensus 70 ~V~Iatp~~~H~~~a~~AL~aGk------hVl~EKPla~t~~ea~-~l~~~a~~~g~~l 121 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGK------HVLCEKPLALTLEEAE-ELVELARKAGVKL 121 (342)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC------EEEEECCCCCCHHHHH-HHHHHHHHCCCEE
T ss_conf 89996980677999999997799------6999289989999999-9999999759949
No 451
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=76.55 E-value=3.9 Score=18.86 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=28.0
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
-|||||+|.- |.-|.-+..|.|.+|++|--+|
T Consensus 62 DVvVVG~G~A-----------Gl~AAi~Aae~Ga~VvllEK~~ 93 (506)
T PRK06481 62 DIVIVGAGGA-----------GMTAAIEAKDAGMNPVILEKMP 93 (506)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 6799898899-----------9999999998899789996899
No 452
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=76.41 E-value=4.6 Score=18.33 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=46.6
Q ss_pred EEEEEEECCHHHHHHHHHHHCCCCCCCCC-EEEEEECCHHHHHHHHHHHHHHHCCCE-EE--E-EHHHHHHHHHC----C
Q ss_conf 13777419999999999998388798872-599996441289999999999988989-99--9-38889999987----9
Q gi|254780439|r 1004 GEVIGIDQDFPLAFAKSQLGIGVDLPHEG-TVFVSVRDADKKRIVPIIQNFKKLGFK-IM--A-TEGTARFLESH----G 1074 (1162)
Q Consensus 1004 GEVmgig~~~~eA~~Ka~~a~g~~lP~~g-~vfisv~d~dK~~~~~~a~~l~~lGf~-l~--A-T~GTa~~L~~~----G 1074 (1162)
|.--|. .+=+..|++++...+......| .+++.+...- ...++..|.++|++ |+ . |.-.++-|.+. +
T Consensus 99 g~l~G~-NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGA---arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~ 174 (283)
T COG0169 99 GKLRGY-NTDGIGFLRALKEFGLPVDVTGKRVLILGAGGA---ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG 174 (283)
T ss_pred CEEEEE-CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHH---HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 979997-478899999998507775667888999897689---9999999998699879999588899999999864505
Q ss_pred CEEEEEECCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 815697505687810788986798549996789
Q gi|254780439|r 1075 LETQKINKVLEGRPHIEDAISNRQVHLVINTTE 1107 (1162)
Q Consensus 1075 i~~~~v~k~~e~~~~i~d~i~~~~i~lVINt~~ 1107 (1162)
...... ..++ ++... ..|++||++.
T Consensus 175 ~~~~~~-----~~~~-~~~~~--~~dliINaTp 199 (283)
T COG0169 175 AAVEAA-----ALAD-LEGLE--EADLLINATP 199 (283)
T ss_pred CCCCCC-----CCCC-CCCCC--CCCEEEECCC
T ss_conf 631102-----4554-12355--4578997887
No 453
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.35 E-value=4.6 Score=18.32 Aligned_cols=44 Identities=30% Similarity=0.501 Sum_probs=24.1
Q ss_pred HHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 99999987978999748765010784513100433799999999998628988997588
Q gi|254780439|r 33 ACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 33 a~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~G 91 (1162)
.-+++++.||++++.|++- |++.-. ...+.+...++|||+...+
T Consensus 21 i~~~~~~~Gy~~ll~~s~~-----~~~~e~----------~~l~~l~~~~vdGiIi~~~ 64 (269)
T cd06281 21 AEDRLRAAGYSLLIANSLN-----DPEREL----------EILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHCCCEEEEEECCC-----CHHHHH----------HHHHHHHHCCCCEEEECCC
T ss_conf 9999998699899996899-----989999----------9999998579989997677
No 454
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=76.30 E-value=4.6 Score=18.31 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=80.4
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf 99871996999413267866451116999999999989985799827986644997899999997289988999630000
Q gi|254780439|r 211 ALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENL 290 (1162)
Q Consensus 211 ~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~ 290 (1162)
....-.|||+|+--..-+|-|---+.|..+|+....--.-. ..-+-.|-|+..---|-++-+++..--.+--...
T Consensus 45 m~~~~~fPvVvKvGhah~G~GKvkven~~~fqD~~s~va~~--~~y~T~EPfid~kyDiriQKIG~~ykay~R~sIS--- 119 (203)
T pfam02750 45 MLTTPTFPVVVKIGHAHSGMGKVKVDNHHDFQDIASVVALT--KTYATTEPFIDSKYDIRVQKIGNNYKAYMRTSIS--- 119 (203)
T ss_pred HCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHC--CCEEEECCCCCCCEEEEEEEHHHHHHHHEECCCC---
T ss_conf 42588988899975415623589960777888887577213--6358861454542558852000044766122003---
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 001000010134337322898899999999999998718345764689999558984999850444
Q gi|254780439|r 291 DPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPR 356 (1162)
Q Consensus 291 dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR 356 (1162)
..=--++|-++. --..++|+ |+.--+.+-++.-.|.| |.|.-.. .++|+-|+||||--
T Consensus 120 gnWK~NtGSamL--Eqi~mter-yK~WvD~~S~lFGGLdI----cav~ai~-~KdGkeyIiEvnds 177 (203)
T pfam02750 120 GNWKANTGSAML--EQIAMSER-YKLWVDTCSEMFGGLDI----CAVEALH-GKDGRDYIIEVMDS 177 (203)
T ss_pred CCCCCCCCHHHH--HHHHHHHH-HHHHHHHHHHHCCCCEE----EEEEEEE-CCCCCEEEEEECCC
T ss_conf 785447037888--65023689-99999999987389307----9998777-68887568996265
No 455
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=76.21 E-value=4.4 Score=18.42 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=63.8
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCEEECCCCCCCCEE--ECC-CCHHH---HHHHHHHH
Q ss_conf 99976775420505466688899999999--879789997487650107845131004--337-99999---99999862
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALK--EEGYRIILVNSNPATIMTDPDLADATY--TEP-ITPEV---VAKIIEKE 81 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alk--e~Gi~vVlVNsNpaTi~TD~~~aD~vY--~eP-lt~e~---v~~Ii~~E 81 (1162)
++|||+||- |.=....|. +-|.+|.+|.++|. .-.-.+.| +++ |+... +.+.++..
T Consensus 2 ~~ViGgGpA-----------G~aiA~~l~~a~~gL~V~~i~p~p~-----f~~~~~tyg~w~~dl~~~~hawl~~l~~~~ 65 (419)
T TIGR01790 2 LIVIGGGPA-----------GLAIALELADARPGLRVQLIEPAPP-----FLPGNNTYGVWDDDLSDLGHAWLADLVEHR 65 (419)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHCCCCEEEEECCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 788747757-----------8999999997505871898678887-----677687442122223278999999884163
Q ss_pred -----------CCCEEEECCCCCHHHHHHHHHHHCCCHHHH-CCEEECCCHHHHHHH
Q ss_conf -----------898899758870268888998875962882-875714998999860
Q gi|254780439|r 82 -----------RPDAILPTTGGQTALNTALSLKRMGVLDRY-GVEMIGAKPETIDKA 126 (1162)
Q Consensus 82 -----------~pDaIlp~~GGqtalnl~~~L~e~gil~~~-~v~~lG~~~~~I~~~ 126 (1162)
+|--+.-.||--+--.|..+|.+. +.+. |+.++......|...
T Consensus 66 W~~~~~y~~~~~~~~L~~~Y~~~~~~~L~~~l~~~--~~~~sG~~~~~~ka~~~~~~ 120 (419)
T TIGR01790 66 WSDAYEYRFPEEPIKLGRAYGSVDRAQLHEELLQK--CPEGSGVLWLEAKAIKVEAD 120 (419)
T ss_pred CCCEEEECCCCCCHHCCCCCEEECHHHHHHHHHHH--HHCCCCEEEEHHHHHHHHHH
T ss_conf 89806883873430105665000158999999986--20037613301356666544
No 456
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=76.15 E-value=4.6 Score=18.28 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=38.9
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 6999976775420505466688899999999879789997487650107845131004337999999999986
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEK 80 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~ 80 (1162)
|||-|+-||.- +.=.-.+-..+++.+...|++++-+..-..-+ .+. .+.+|+++.|..|+..
T Consensus 1 KrIaIltsGGd----~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL------~~~-~~~~l~~~~v~~i~~~ 62 (317)
T cd00763 1 KRIGVLTSGGD----APGMNAAIRGVVRSAIAEGLEVYGIRDGYAGL------IAG-DIVPLDRYSVSDIINR 62 (317)
T ss_pred CEEEEECCCCC----CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH------CCC-CEEECCHHHHHHHHHC
T ss_conf 95999957888----56889999999999987899999982567787------079-8162899999879865
No 457
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.13 E-value=4.6 Score=18.33 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=26.6
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9776655699997677542050546668889999999987978999748765
Q gi|254780439|r 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 1 MP~~~dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|-.+-+=|.+||-|++. -| |...++.|-++|.++++..-|++
T Consensus 1 M~l~L~gK~alVTGas~-GI---------G~aiA~~la~~Ga~Vii~~r~~~ 42 (277)
T PRK05875 1 MQLSLQDRTYLVTGGGS-GI---------GKGVAAALVAAGAAVMIVGRNPD 42 (277)
T ss_pred CCCCCCCCEEEEECCCC-HH---------HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 90468999899948874-99---------99999999987998999979889
No 458
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=76.07 E-value=4.6 Score=18.27 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=17.4
Q ss_pred ECCCCCCCCEEE-CCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 078451310043-3799999999998628988997588
Q gi|254780439|r 55 MTDPDLADATYT-EPITPEVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 55 ~TD~~~aD~vY~-ePlt~e~v~~Ii~~E~pDaIlp~~G 91 (1162)
+|+-+..|.+|= +.-=.+.|.++.++-+|+.|...-+
T Consensus 58 sT~l~E~~~VfGG~~~L~~~I~~~~~~~~P~~I~v~tT 95 (410)
T cd01968 58 STDLSEKDVIFGGEKKLYKAILEIIERYHPKAVFVYST 95 (410)
T ss_pred CCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 77898685565739999999999998549988999756
No 459
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=75.81 E-value=4.7 Score=18.23 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=35.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHH
Q ss_conf 9999767754205054666888999999998-79789997487650107845131004337999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKE-EGYRIILVNSNPATIMTDPDLADATYTEPITPEVV 74 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke-~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v 74 (1162)
-|||+|+||. |--+.-.|-. .|+++.+|.-.|.+..+. -||- +.|=|.|.+
T Consensus 34 DVLIVGAGP~-----------GL~lA~~Lar~~Gv~~~IIDk~~~~~~~~--rA~g--l~~RTlEil 85 (634)
T PRK08294 34 DVLIVGCGPA-----------GLILAAQLSQFPEITTRIVERKPGRLELG--QADG--IACRTMEMF 85 (634)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCCE--ECHHHHHHH
T ss_conf 8899996589-----------99999998713799889992799999998--8377--778999999
No 460
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=75.79 E-value=4.7 Score=18.21 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=40.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCC-CHHHHHHHHHHHCCCEEE
Q ss_conf 9999767754205054666888999999998797899974876501078451310043379-999999999862898899
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPI-TPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePl-t~e~v~~Ii~~E~pDaIl 87 (1162)
||||.|+.. +-|++.++.|.+.|++|+.+.-++.....-....-+.+..-+ ..+.+.+.+ ..+|+|+
T Consensus 2 riLVTGgtG----------fiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~--~~~d~Vi 69 (328)
T TIGR03466 2 KVLVTGATG----------FVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAL--AGCRALF 69 (328)
T ss_pred EEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHH--HCCCEEE
T ss_conf 499986777----------9999999999978498999989998655652179779982079999999997--1785897
Q ss_pred EC
Q ss_conf 75
Q gi|254780439|r 88 PT 89 (1162)
Q Consensus 88 p~ 89 (1162)
-.
T Consensus 70 H~ 71 (328)
T TIGR03466 70 HV 71 (328)
T ss_pred EE
T ss_conf 61
No 461
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=75.70 E-value=4.2 Score=18.61 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 69999767754205054666888999999998797899974876501078451310043379999999999862898899
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAIL 87 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIl 87 (1162)
--|.|||+|.- |+.|..|.-.+|.+|.|+--|+.||-- |+=.--+.-+-.-.| - -..|
T Consensus 5 ~DVIVIGgGHA-----------G~EAA~AaARmG~ktlLlT~~~dtig~---msCNPaIGG~~KG~l----v-rEID--- 62 (621)
T COG0445 5 YDVIVIGGGHA-----------GVEAALAAARMGAKTLLLTLNLDTIGE---MSCNPAIGGPGKGHL----V-REID--- 62 (621)
T ss_pred CCEEEECCCCC-----------CHHHHHHHHCCCCEEEEEECCCCCEEE---CCCCCCCCCCCCCEE----E-EEEH---
T ss_conf 85699899842-----------047777664369807999737774465---035644577355326----7-7524---
Q ss_pred ECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 758870268888998875962882875714998999860588999999998789888
Q gi|254780439|r 88 PTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATP 144 (1162)
Q Consensus 88 p~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~ 144 (1162)
.+||..|-. ..+.||--++==.--|+-+.+++.--||.++++.|++.=..++
T Consensus 63 -ALGG~Mg~~----~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~ 114 (621)
T COG0445 63 -ALGGLMGKA----ADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQP 114 (621)
T ss_pred -HCCCHHHHH----HHHCCCCHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -124557776----6650786533367776210450654428999999999985499
No 462
>PRK13748 putative mercuric reductase; Provisional
Probab=75.66 E-value=3.7 Score=19.05 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCC-CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999998718345-7646899995589849998504443103578887634614767776413446101357
Q gi|254780439|r 319 NAAIAVLKEIGVES-GGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGN 390 (1162)
Q Consensus 319 ~~a~kI~r~lgi~v-G~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~ 390 (1162)
.++..|-++|.- + |.-+++--+ ......+|+++-++.... ++|--++||.......
T Consensus 13 ~c~~~v~~al~~-~~gv~~~~v~~---~~~~a~~~~~~~~~~~~~------------~~av~~~gy~~~~~~~ 69 (561)
T PRK13748 13 SCAAHVKEALEK-VPGVQSADVSY---PKGTAQLAIEVGTSPDAL------------TAAVAGLGYRATLADA 69 (561)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEEC---CCCEEEEEECCCCCHHHH------------HHHHHHHCCCCCCCCC
T ss_conf 788999999853-88931688761---476589996899998999------------9999982887311446
No 463
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=75.57 E-value=4.8 Score=18.17 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=9.8
Q ss_pred HHHHHCCCEEEEECC
Q ss_conf 999987978999748
Q gi|254780439|r 35 KALKEEGYRIILVNS 49 (1162)
Q Consensus 35 ~alke~Gi~vVlVNs 49 (1162)
|.+||.|.++.++.+
T Consensus 14 r~lrelg~~~~v~~~ 28 (178)
T cd01744 14 RELLKRGCEVTVVPY 28 (178)
T ss_pred HHHHHCCCEEEEEEC
T ss_conf 999987997999939
No 464
>KOG1209 consensus
Probab=75.34 E-value=4.8 Score=18.13 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHCCCEEEECC
Q ss_conf 246689888887598386127
Q gi|254780439|r 708 QTPLKLSKILEKNQIPILGTQ 728 (1162)
Q Consensus 708 qt~~~la~~L~~~gv~ilGts 728 (1162)
-....|++++.+.|..++-|+
T Consensus 19 GIG~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209 19 GIGYALAKEFARNGYLVYATA 39 (289)
T ss_pred CHHHHHHHHHHHCCEEEEEEC
T ss_conf 534999999986781999970
No 465
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=75.26 E-value=4.7 Score=18.24 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 699997677542050546668889999999987978999748765
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPA 52 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpa 52 (1162)
|||.|||+|.- |+--...|.+.|.+|.+..-|++
T Consensus 1 kKI~IiGaG~w-----------GtAla~~la~n~~~V~l~~r~~~ 34 (159)
T pfam01210 1 KKIAVLGAGSW-----------GTALAKVLARNGHEVRLWGRDEE 34 (159)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEEECCH
T ss_conf 98999996999-----------99999999987998999990436
No 466
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.17 E-value=4.9 Score=18.10 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHHHHCCCCEEEE-ECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 99999659806996-06865211232458637984167889999998748567822799844512466898888875983
Q gi|254780439|r 645 SFSLKEAGFETIMI-NCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIP 723 (1162)
Q Consensus 645 ~~aLr~~G~~tImI-N~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~~gv~ 723 (1162)
..++++.|.+.+.. ...+. .|| +..++.=++..+|+. |++...++....+.+.+.+.|++
T Consensus 158 ~~~~~~~G~~vv~~~~~~~~--~~D-------------fs~~l~~i~~~~pD~----v~~~~~~~~~~~~~~q~~~~G~~ 218 (344)
T cd06348 158 QKALRDQGLNLVTVQTFQTG--DTD-------------FQAQITAVLNSKPDL----IVISALAADGGNLVRQLRELGYN 218 (344)
T ss_pred HHHHHHCCCEEEEEECCCCC--CCC-------------HHHHHHHHHHCCCCE----EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 99998769858998716898--601-------------789999987519999----99945742599999999976999
Q ss_pred --EEECC
Q ss_conf --86127
Q gi|254780439|r 724 --ILGTQ 728 (1162)
Q Consensus 724 --ilGts 728 (1162)
++|++
T Consensus 219 ~~~~~~~ 225 (344)
T cd06348 219 GLIVGGN 225 (344)
T ss_pred CEEEEEC
T ss_conf 7099866
No 467
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=75.15 E-value=4.2 Score=18.57 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.3
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 69999767754205054666888999999998797899974876
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
--||||||| .+|..|.-.+++.|.+|+||.-.+
T Consensus 8 ~DVlVIGsG-----------~AGl~AAi~a~~~g~~V~lv~K~~ 40 (588)
T PRK08958 8 FDAVVIGAG-----------GAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred CCEEEECCC-----------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 798999954-----------999999999987499389997889
No 468
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.15 E-value=4.7 Score=18.26 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCC
Q ss_conf 7774189972763020147665318999999999659806996-06865
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI-NCNPE 663 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImI-N~NPE 663 (1162)
...++++|||+|.- +--++.+|.+.|.+.|.| |-+++
T Consensus 125 ~~~~~vlilGaGGa-----------a~ai~~al~~~g~~~i~I~nR~~~ 162 (284)
T PRK12549 125 ASLERVVQLGAGGA-----------GAAVAHALLTLGVERLTLFDVDPA 162 (284)
T ss_pred CCCCEEEEECCCCH-----------HHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 35571899656616-----------899999999769998999979889
No 469
>PRK06349 homoserine dehydrogenase; Provisional
Probab=74.94 E-value=4.9 Score=18.05 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8876346147677764134461013
Q gi|254780439|r 364 ASKATGFPIAKIAAKLAVGYTLDEL 388 (1162)
Q Consensus 364 askatgypia~vaakl~~G~~L~ei 388 (1162)
||-+.|.||.+....-..|-.+..|
T Consensus 130 AaV~GGIPiI~~l~~~l~~~~i~~i 154 (432)
T PRK06349 130 AAVAGGIPIIKALREGLAANRITRV 154 (432)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 3224661206999876404774377
No 470
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=74.83 E-value=5 Score=18.03 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=62.8
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHH--HCCCCCCCEE
Q ss_conf 302014766531899999999965980----6996068652112324586379841678899999987--4856782279
Q gi|254780439|r 628 PNRIGQGIEFDYCCCHASFSLKEAGFE----TIMINCNPETVSTDYDIADRLYFESLTEEDILEILRV--EQQKGELVGI 701 (1162)
Q Consensus 628 p~RIGqgiEFDy~~v~a~~aLr~~G~~----tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~--E~p~g~~~~v 701 (1162)
.+||-+|--+.| +-.+...++++|+. +|+. | .-|+.+.+.++.+. .++. ..-||
T Consensus 278 GiR~DSGD~~~~-~~k~~~~~~~~g~dp~~k~iv~-------------S-----d~Lde~~i~~L~~~~~~~i~-~sfGI 337 (400)
T PRK05321 278 GLRHDSGDPFEW-GEKAIAHYEKLGIDPRTKTLVF-------------S-----DGLDLDKALELYRHFRGRIR-LSFGI 337 (400)
T ss_pred CEECCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEE-------------C-----CCCCHHHHHHHHHHHCCCCC-CEEEC
T ss_conf 334488787899-9999999997699966647998-------------6-----99999999999998627876-45754
Q ss_pred EEEC----CCHHHHHHHHHHHHC-CCEEEECCCCHHHHCCCHHHHHHHHH-HCCCCCC
Q ss_conf 9844----512466898888875-98386127520331028678999888-7098668
Q gi|254780439|r 702 IVQF----GGQTPLKLSKILEKN-QIPILGTQPDSIDLAEDRDRFQKLLM-ELDLNQP 753 (1162)
Q Consensus 702 i~q~----gGqt~~~la~~L~~~-gv~ilGts~~~Id~aEDR~~F~~ll~-~l~i~~p 753 (1162)
.+.+ .|+.|+|+.-+|.+. |-+...-|-+.--.+.+...+.+.++ -.+++.+
T Consensus 338 GT~Lt~D~~~~~~L~~VyKLve~~G~P~~KlSd~~~K~t~~~~~~~~~~~~~f~~~~~ 395 (400)
T PRK05321 338 GTNLTNDLPGVKPLNIVIKLVECNGQPVAKLSDSPGKTMCDDPEFLRYLRQVFGVPEP 395 (400)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 7551058999986657888776688423450489776569978999999998099933
No 471
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=74.76 E-value=4.2 Score=18.61 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=26.8
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
-|||||||- +|..|.-++++.|.+|+||.-.+
T Consensus 36 DVlVIGsG~-----------AGL~AAi~a~~~G~~V~lleK~~ 67 (622)
T PTZ00139 36 DAVVVGAGG-----------AGLRAALGLSESGYKTACISKLF 67 (622)
T ss_pred CEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 879999669-----------99999999997699089997889
No 472
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=74.40 E-value=5.1 Score=17.96 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=6.9
Q ss_pred EECCCCHHHHHHHHHHHC
Q ss_conf 433799999999998628
Q gi|254780439|r 65 YTEPITPEVVAKIIEKER 82 (1162)
Q Consensus 65 Y~ePlt~e~v~~Ii~~E~ 82 (1162)
|++==|.+.+.+-|+.=.
T Consensus 38 yv~~~t~edv~~AIk~M~ 55 (356)
T PRK08334 38 VEEFRTVEEVAEAIKNMT 55 (356)
T ss_pred EEEECCHHHHHHHHHHCE
T ss_conf 999589999999977385
No 473
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=74.38 E-value=4.9 Score=18.07 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 77418997276302014766531899999999965980699606865
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPE 663 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPE 663 (1162)
..++++|+|+|.- +--++.+|++.|-+..++|-++|
T Consensus 331 ~~~~~~vlGaGGa-----------arAi~~~l~~~g~~i~I~nRt~~ 366 (477)
T PRK09310 331 NNQHVAIVGAGGA-----------AKAIATTLARQGAELLIFNRTKA 366 (477)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 4462244247507-----------99999999867997999979989
No 474
>PRK07283 hypothetical protein; Provisional
Probab=74.24 E-value=5.1 Score=17.93 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=42.9
Q ss_pred ECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 505687810788986798549996789985231108999999970997994599999999999
Q gi|254780439|r 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVFQAI 1143 (1162)
Q Consensus 1081 ~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al 1143 (1162)
.|+-.|...+++.|+++++.|||=-.+.+. .-..++++.|-.|+||+++..... .+=.||
T Consensus 17 gKlvsG~~~v~~ai~~~ka~LVivA~Das~--nT~KK~~dkc~~y~Vp~~~~~tk~-eLg~ai 76 (98)
T PRK07283 17 GKIISGEELVVKAIQHGQAILVFLANDAGP--NLTKKVTDKSNYYNVEVSTVFSAL-ELSAAL 76 (98)
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEEECCCCH--HHHHHHHHHHHHCCCCEEEECCHH-HHHHHH
T ss_conf 754225799999998198359999677676--689999999985599889961899-998875
No 475
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=74.19 E-value=4 Score=18.76 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=66.7
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCC------CEEE-----CCCCHHHHHHH
Q ss_conf 999976775420505466688899999999879789997487650107845131------0043-----37999999999
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD------ATYT-----EPITPEVVAKI 77 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD------~vY~-----ePlt~e~v~~I 77 (1162)
||||+|+|.+ |+..+|.|--.|+..+-| .|.|.-+ ..+| .---.+...+-
T Consensus 1 kvlvvG~Ggl-----------G~e~~k~la~~Gvg~i~i--------vD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~ 61 (291)
T cd01488 1 KILVIGAGGL-----------GCELLKNLALSGFRNIHV--------IDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKF 61 (291)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEE--------ECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 9899928888-----------999999999848985999--------739934413565674676553687899999999
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHC--------CCCCCCCCCC
Q ss_conf 98628988997588702688889988759628828757149989998605889999999987--------8988862000
Q gi|254780439|r 78 IEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNI--------PLATPKSILA 149 (1162)
Q Consensus 78 i~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~--------gip~~~s~~~ 149 (1162)
|++-.|+--+..+-+.- . ... ...++++.+-+.|.. ..+.|....+.|-.+ .+|...+.+.
T Consensus 62 i~~~np~v~v~~~~~~i----~-~~~-~~f~~~fdvVi~~lD-----n~~aR~~vN~~~v~~~~~~~~~~~~PlidgGt~ 130 (291)
T cd01488 62 VNDRVPGVNVTPHFGKI----Q-DKD-EEFYRQFNIIICGLD-----SIEARRWINGTLVSLLLYEDPESIIPLIDGGTE 130 (291)
T ss_pred HHHHCCCCEEEEEECCH----H-HCC-HHHHHHCCEEEECCC-----CHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 99878997899850531----0-078-989951999998878-----999999999999874313554457746860256
No 476
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=74.18 E-value=5.1 Score=17.92 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHH-HHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 7741899727630201476653189999-999996598069960686521123245863798416788999999874856
Q gi|254780439|r 617 DRKKIVILGGGPNRIGQGIEFDYCCCHA-SFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 617 ~~kkviVlGsGp~RIGqgiEFDy~~v~a-~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
..||+.+++.- -.|-.....+ ...+++.|.+.+.--.-|-. .|| +..++.=++..+|+
T Consensus 132 g~k~vaii~~d-------~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g-~~D-------------fs~~l~ki~~a~pD 190 (348)
T cd06355 132 GGKRFYLVGSD-------YVYPRTANKILKAQLESLGGEVVGEEYLPLG-HTD-------------FQSIINKIKAAKPD 190 (348)
T ss_pred CCCEEEEEECC-------CHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCC-------------HHHHHHHHHHCCCC
T ss_conf 99879999168-------5134899999999999859989999813799-756-------------79999999976999
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 7822799844512466898888875983
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQIP 723 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~gv~ 723 (1162)
. |+.-..|....++.+.+.+.|+.
T Consensus 191 ~----v~~~~~g~~~~~~~~q~~~~G~~ 214 (348)
T cd06355 191 V----VVSTVNGDSNVAFFKQLKAAGIT 214 (348)
T ss_pred E----EEEECCCCCHHHHHHHHHHHCCC
T ss_conf 9----99947651248999999981787
No 477
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.94 E-value=5.2 Score=17.88 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 569999767754205054666888999999998797899974876
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
-.+|.|+|-|-+ |..-.++||+.|..+..+....
T Consensus 3 ~~~v~IvG~Gli-----------G~s~a~~l~~~g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLM-----------GGSLARALKEAGLVVRIIGRDR 36 (279)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC
T ss_conf 648999877467-----------7999999997698479972477
No 478
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=73.82 E-value=5.2 Score=17.86 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCCEEECCCCCCCCEE-ECCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 7650107845131004-33799999999998628988997588
Q gi|254780439|r 50 NPATIMTDPDLADATY-TEPITPEVVAKIIEKERPDAILPTTG 91 (1162)
Q Consensus 50 NpaTi~TD~~~aD~vY-~ePlt~e~v~~Ii~~E~pDaIlp~~G 91 (1162)
++.+++|+-+-.|.+| =+.--.+.|.+++++-+|+.|...-+
T Consensus 54 ~~~~~sT~l~E~~~VfGg~~~L~~~i~~~~~~~~P~~i~V~tT 96 (406)
T cd01967 54 YKYGFSTDMQEKDIVFGGEKKLKKAIKEAYERFPPKAIFVYST 96 (406)
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8766767888113104809999999999998569978999777
No 479
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.82 E-value=5.2 Score=17.85 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=40.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-EEC------CCCCEEECCCCCCCCEEECCCCHHHHHHHHHHH
Q ss_conf 9999767754205054666888999999998797899-974------876501078451310043379999999999862
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRII-LVN------SNPATIMTDPDLADATYTEPITPEVVAKIIEKE 81 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vV-lVN------sNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E 81 (1162)
|+|++|+|.. |+.+.+.|---|++.+ +|+ |||-. |+=+...|- --.--..+...+-+++-
T Consensus 1 kvLllGaGtL-----------Gc~var~L~~~GV~~it~VD~~~Vs~SN~~R-Q~Lf~~~D~-~~g~~Ka~aAa~~Lk~I 67 (307)
T cd01486 1 KCLLLGAGTL-----------GCNVARNLLGWGVRHITFVDSGKVSYSNPVR-QSLFTFEDC-KGGKPKAEAAAERLKEI 67 (307)
T ss_pred CEEEECCCCC-----------CHHHHHHHHHHCCCEEEEEECCEEECCCCCC-CCCCCHHHH-CCCCCHHHHHHHHHHHH
T ss_conf 9799857752-----------0699999998369858998499885566223-567636665-18980799999999986
Q ss_pred CCCEE
Q ss_conf 89889
Q gi|254780439|r 82 RPDAI 86 (1162)
Q Consensus 82 ~pDaI 86 (1162)
.|+.-
T Consensus 68 ~P~v~ 72 (307)
T cd01486 68 FPSID 72 (307)
T ss_pred CCCCC
T ss_conf 99983
No 480
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=73.80 E-value=5.2 Score=17.85 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=67.7
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCEEEC--CCCCCCC---EEECCCCHHHHHHHHHHHC
Q ss_conf 999767754205054666888999999998797--89997487650107--8451310---0433799999999998628
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNPATIMT--DPDLADA---TYTEPITPEVVAKIIEKER 82 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNpaTi~T--D~~~aD~---vY~ePlt~e~v~~Ii~~E~ 82 (1162)
|||||+|-. |.-+++.|.+.+- +++++.-+++.... +.....+ ..+-..+.+.+.+.++ +
T Consensus 1 IlvlGaG~v-----------G~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~ 67 (384)
T pfam03435 1 VLIIGAGGV-----------GQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLK--E 67 (384)
T ss_pred CEEECCCHH-----------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH--C
T ss_conf 989897787-----------999999997289988699998988998987752369853899957789999999871--2
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATP 144 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~ 144 (1162)
.|-++-..+.+....++..+.+.|+ .++-++... ++-..+.+..++.|+...
T Consensus 68 ~diVv~~~p~~~~~~i~~~c~~~g~------~yvd~s~~~----~~~~~l~~~a~~ag~~~~ 119 (384)
T pfam03435 68 GDLVINLAPPFLSLTVLKACIETGV------HYVDTSYLR----EAQLALHEKAKEAGVTAV 119 (384)
T ss_pred CCEEEECCCHHHCHHHHHHHHHCCC------CEEECCCCH----HHHHHHHHHHHHCCCEEE
T ss_conf 8999999843416999999997399------757534366----889999997765696899
No 481
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=73.57 E-value=5.3 Score=17.81 Aligned_cols=65 Identities=31% Similarity=0.467 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHH--
Q ss_conf 999999987978999748765010784513100433799999999998628988997588702688889988759628--
Q gi|254780439|r 32 QACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLD-- 109 (1162)
Q Consensus 32 qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~-- 109 (1162)
..|+||+..|+++++++. |+.+ .-||++ |+|+ ||-++ +...|.+.|..+
T Consensus 12 s~~~Al~~lG~~~~~~~~-p~~i----~~ad~L---------------------ILPG-g~s~~--~~~~L~~~gl~~~i 62 (183)
T cd01749 12 EHIRALERLGVEVIEVRT-PEDL----EGIDGL---------------------IIPG-GESTT--IGKLLRRTGLLDPL 62 (183)
T ss_pred HHHHHHHHCCCCEEEECC-HHHH----HHCCEE---------------------EECC-CCHHH--HHHHHHHCCCHHHH
T ss_conf 999999987997999899-9998----318989---------------------9889-40899--99999887888999
Q ss_pred ----HHCCEEECCCHHHHHH
Q ss_conf ----8287571499899986
Q gi|254780439|r 110 ----RYGVEMIGAKPETIDK 125 (1162)
Q Consensus 110 ----~~~v~~lG~~~~~I~~ 125 (1162)
+-+..+||+=.-..-+
T Consensus 63 ~~~i~~gkP~LGIClGMQlL 82 (183)
T cd01749 63 REFIRAGKPVFGTCAGLILL 82 (183)
T ss_pred HHHHHCCCCEEEHHHHHHHH
T ss_conf 99998499847510778887
No 482
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=73.55 E-value=5.3 Score=17.81 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999998753037602799998653379988999885899999998898
Q gi|254780439|r 521 IKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSILSGIPCNEIRKIRH 572 (1162)
Q Consensus 521 i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~l~~~~e~~Vr~~R~ 572 (1162)
.+.+..+++.|..-+ +.....+.-.+..|+|-+.||..+|+++..|++.-.
T Consensus 107 ~e~~~~l~~~l~~LP-~~~R~vf~L~r~~gls~~EIA~~LgiS~~tVk~~l~ 157 (167)
T PRK12528 107 LETLVELDRLLDGLP-PLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLN 157 (167)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999987099-999999999998298999999997979999999999
No 483
>PTZ00052 thioredoxin reductase; Provisional
Probab=73.32 E-value=5.4 Score=17.77 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHCCCCHHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7607982489999-99997389788998771889899999999
Q gi|254780439|r 482 AISIPCPDRLRTV-AQALRLGVSVEETHQSSNIDPWFIQQIKM 523 (1162)
Q Consensus 482 ~L~~p~~~Rl~~i-~eAlr~G~sv~ei~elT~Id~wFl~~i~~ 523 (1162)
.+.-|...-|... +-|++.|.+++++.+....+|=|=+-+.+
T Consensus 476 hivGp~AsELI~e~alAm~~g~t~~dla~tih~HPTlSEa~~~ 518 (541)
T PTZ00052 476 HYVGPNAGEVTQGMALALRLKATKKDFDDCIGIHPTDAESFMN 518 (541)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 9986998999999999998799999993186779987999986
No 484
>PRK07714 hypothetical protein; Provisional
Probab=73.29 E-value=4.9 Score=18.09 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred ECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 505687810788986798549996789985231108999999970997994599999999999
Q gi|254780439|r 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVFQAI 1143 (1162)
Q Consensus 1081 ~k~~e~~~~i~d~i~~~~i~lVINt~~~~~~~~dg~~iRr~Ai~~~ip~~T~~~~a~a~~~al 1143 (1162)
.|+-.|...+.+.|++++..|||=-.+.+ ..-..++++.|-.|+||++...... .+-.|+
T Consensus 17 gklvsG~~~v~~~ik~~k~~LVilA~Das--~~t~kk~~~~c~~y~Vp~~~~~tk~-eLg~ai 76 (100)
T PRK07714 17 RKVISGEELVLKEVRSGKAKLVLLSEDAS--VNTTKKITDKCTYYNVPMRKVENRQ-QLGHAI 76 (100)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCC--HHHHHHHHHHHHCCCCCEEEECCHH-HHHHHH
T ss_conf 77123479999999959830999967668--7799999999850699789847999-999975
No 485
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=72.92 E-value=5.5 Score=17.70 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCC---------CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf 99999999659806996068652---------112324586379841678899999987485678227998445124668
Q gi|254780439|r 642 CHASFSLKEAGFETIMINCNPET---------VSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLK 712 (1162)
Q Consensus 642 v~a~~aLr~~G~~tImIN~NPET---------VSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~ 712 (1162)
.+.++..+++||++|-|++.-.. =++|.++-.++..--...+.+....++-+-.. .++.-.||-...|
T Consensus 22 ~ela~~A~~lGy~~iait~h~d~~~~~~~~~~~~~~i~v~~gvei~~~dp~~~~~l~~k~r~~~---dIv~V~g~~~~~n 98 (237)
T PRK00912 22 LELAEEASHLGFSGICLSYHSDKYPDLKSILPETEDFEIFRGVEIVEENPSKLRGLVGKFRKKV---DVLIVHGGDEKVN 98 (237)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCC---CEEEEECCCHHHH
T ss_conf 9999999986986899806753335433335777785688567997249788778899885248---7899947872889
Q ss_pred HHHHHHHCCCEEEECCC
Q ss_conf 98888875983861275
Q gi|254780439|r 713 LSKILEKNQIPILGTQP 729 (1162)
Q Consensus 713 la~~L~~~gv~ilGts~ 729 (1162)
- ..++...|.||+.+.
T Consensus 99 r-~A~e~~~VDIL~~p~ 114 (237)
T PRK00912 99 R-AACENPRVDILNHPY 114 (237)
T ss_pred H-HHHHCCCCCEEECCC
T ss_conf 9-987268987884654
No 486
>PRK06139 short chain dehydrogenase; Provisional
Probab=72.73 E-value=5.5 Score=17.67 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=7.2
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 999999879789997487
Q gi|254780439|r 33 ACKALKEEGYRIILVNSN 50 (1162)
Q Consensus 33 a~~alke~Gi~vVlVNsN 50 (1162)
.+++|-++|.++|++.-|
T Consensus 22 iA~~~A~~Ga~Vvl~~R~ 39 (324)
T PRK06139 22 TAEAFARRGARLVLAARD 39 (324)
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 999999879989999899
No 487
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=72.44 E-value=5.6 Score=17.62 Aligned_cols=198 Identities=21% Similarity=0.263 Sum_probs=104.4
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECC---CCCCCCEEE---CCCCHHH--------
Q ss_conf 69999767754205054666888999999998797899974876501078---451310043---3799999--------
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTD---PDLADATYT---EPITPEV-------- 73 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD---~~~aD~vY~---ePlt~e~-------- 73 (1162)
.+|-|||+|= +|+.|..-|-+.|++|+|--=-|.-.+=- -++|-=|+- .-.+...
T Consensus 1 ~~v~VIGgGL-----------AGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~E 69 (444)
T TIGR00137 1 EKVIVIGGGL-----------AGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEE 69 (444)
T ss_pred CEEEEECCCC-----------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHH
T ss_conf 9368971885-----------34689999984897279975387657787666660223202101101012012368999
Q ss_pred ---H-HHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---9-999986289889975887026888899887596288287571499899986058899999999878988862000
Q gi|254780439|r 74 ---V-AKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILA 149 (1162)
Q Consensus 74 ---v-~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~ 149 (1162)
+ .-||.-.+- +-+|+=| . .+=||..|++-+.+-
T Consensus 70 mr~L~SliI~aAd~-~~VPAGG---------A-----------------------LaVDR~iFs~s~Te~---------- 106 (444)
T TIGR00137 70 MRKLDSLIIEAADE-AAVPAGG---------A-----------------------LAVDRKIFSESVTEK---------- 106 (444)
T ss_pred HHHHHHHHHHHHHH-CCCCCCC---------C-----------------------CHHHHHHHHHHHHHH----------
T ss_conf 88630799987653-3689885---------2-----------------------011278999988776----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHCCCCEEEE----
Q ss_conf 23443333323333333444444443333222111-111233444444455444899--99999998719969994----
Q gi|254780439|r 150 NATDIKEHDRKLHEEERENLKKTLSKEELDAALYA-LELKWNLEENDRKHRYICHAM--AVAVQALDEIGLPLIIR---- 222 (1162)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~--~ea~~~a~~iGyPvivR---- 222 (1162)
+.-+|-.+++.+++..+=.. +.--.+++.++......++.+ .+.+-|=+-+ =|+++.
T Consensus 107 ---------------v~sHPnv~lireEV~EIPe~~~tviaTGPLTS~aLse~lkeltG~dyLyFyDAa-aPIVe~dS~d 170 (444)
T TIGR00137 107 ---------------VKSHPNVTLIREEVTEIPEEEVTVIATGPLTSEALSEKLKELTGEDYLYFYDAA-APIVEKDSVD 170 (444)
T ss_pred ---------------HHCCCCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHC-CCEEHHCCCC
T ss_conf ---------------412884588716400515997079863888827889999875063024455300-5400000045
Q ss_pred -------ECCCCCCCCC-CCCCCHHHHHHHHHHHHHH--CCCCCE--EEEEECCCCEEEEEEEEE
Q ss_conf -------1326786645-1116999999999989985--799827--986644997899999997
Q gi|254780439|r 223 -------PSFTLGGTGG-GIAYNRSEFLEIVENGLHA--SPTTEV--LIEESVLGWKEYELEMMR 275 (1162)
Q Consensus 223 -------ps~~lGG~G~-~iv~n~eeL~~~~~~al~~--s~~~~v--lIeksl~g~kEiE~eVir 275 (1162)
.-|..|+..= -=+-++||+.+.-+.-+++ -|-++. ==+.|-+|+-=||.-.-|
T Consensus 171 ~~k~f~~SRYdKGeaaYlNCp~teEey~~F~eaL~~AE~vplKdFdrEka~fFEGClPIEemA~R 235 (444)
T TIGR00137 171 KEKAFLASRYDKGEAAYLNCPLTEEEYKKFYEALLEAEKVPLKDFDREKAVFFEGCLPIEEMAKR 235 (444)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHC
T ss_conf 22110102357765553267777456778999998734788987744221332288778999624
No 488
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=72.14 E-value=0.86 Score=24.06 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=31.5
Q ss_pred CEEEECCCCHHHHCCCHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8386127520331028678999888709--8668542112156655565536971675134444
Q gi|254780439|r 722 IPILGTQPDSIDLAEDRDRFQKLLMELD--LNQPRNGISHSVEHARLIACEIGFPLLIRPSYVL 783 (1162)
Q Consensus 722 v~ilGts~~~Id~aEDR~~F~~ll~~l~--i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVL 783 (1162)
+--+|-||-.-+..|.=+-|.++.+-|- +-.|......++..+.+.|++.|-|+++-|--+.
T Consensus 27 lLA~GasPiMa~~~~E~~e~~~~a~aL~iNiGTl~~~~~~~m~~a~~~A~~~~~PvVLDPVgvG 90 (242)
T cd01170 27 LLAIGASPIMSDAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVG 90 (242)
T ss_pred HHHCCCCHHHCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 9982996232598688999998517448866889989999999999999973998897474468
No 489
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=71.87 E-value=5.8 Score=17.53 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 99999999879789997487650107845131004337999999999986289889975
Q gi|254780439|r 31 TQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPT 89 (1162)
Q Consensus 31 ~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~ 89 (1162)
..+-.++++.||++++.|+|- +-.+ ..+.+.+.+..-++|||+.+
T Consensus 19 ~gi~~~~~~~GY~~~i~~~~~-------~~~~-------~~~~~~~~l~~~~vdGiIl~ 63 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDS-------GSPD-------LAERVRALLQRSRVDGVILT 63 (270)
T ss_pred HHHHHHHHHCCCEEEEEECCC-------CCHH-------HHHHHHHHHHHCCCCEEEEE
T ss_conf 999999998499899996999-------9989-------99999999996699989994
No 490
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=71.66 E-value=5.8 Score=17.49 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCCEEEEEEEEEECCCCE-
Q ss_conf 9999999998719969994132678664511169999999999899857998279-86644997899999997289988-
Q gi|254780439|r 204 AMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVL-IEESVLGWKEYELEMMRDIKGNC- 281 (1162)
Q Consensus 204 s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vl-Ieksl~g~kEiE~eVirD~~gn~- 281 (1162)
+.++..+-+.+-||-++-. .+.|-+.-+++....++.+.+-+.. +.++ +.-++.| .+|..
T Consensus 216 ~~~~i~~~v~~~g~~ii~~--~gkgst~~gia~a~~~i~~aIl~d~-----~~v~pvs~~l~g-----------~yg~~~ 277 (322)
T PTZ00082 216 EIDEIFERTVNSALEIVNL--YGSGSAYFAPAAAAIEMAEAYLKDK-----KKVLPCSCYLEG-----------QYGHKD 277 (322)
T ss_pred HHHHHHHHHCCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHCCC-----CCEEEEEEEECC-----------CCCCCC
T ss_conf 9999998640565223130--4877663029999999999996478-----956999999506-----------778726
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9996300000010000101343373228988999999999999987
Q gi|254780439|r 282 IVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE 327 (1162)
Q Consensus 282 i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~ 327 (1162)
++++--=-+-+-||+.- .|. .|+++|.++|+.++..|=+-
T Consensus 278 v~~s~P~~iG~~Gve~i-----~~l-~L~~~E~~~l~~Sa~~ik~~ 317 (322)
T PTZ00082 278 IYGGTPAVIGANGVEKV-----IEL-KLTPEEQAKFDESIKEIKRL 317 (322)
T ss_pred EEEEEEEEECCCCEEEE-----CCC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 79998999822722074-----699-98999999999999999999
No 491
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=71.63 E-value=5.8 Score=17.49 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHHCCCE--EEEE--CCCCC------------EE-ECCCCCCCCEE-EC
Q ss_conf 569999767-7542050546668889999999987978--9997--48765------------01-07845131004-33
Q gi|254780439|r 7 LKTLLIIGA-GPIVIGQACEFDYSGTQACKALKEEGYR--IILV--NSNPA------------TI-MTDPDLADATY-TE 67 (1162)
Q Consensus 7 ikkvLviGs-Gpi~IGqa~EfDys~~qa~~alke~Gi~--vVlV--NsNpa------------Ti-~TD~~~aD~vY-~e 67 (1162)
.||+.|+|| |.| |+|+...++..+.+ ++.+ +.|.+ -+ +.|...+..+- ..
T Consensus 1 ~k~i~iLGSTGSI-----------G~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~ 69 (385)
T COG0743 1 MKKLTILGSTGSI-----------GTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLL 69 (385)
T ss_pred CCEEEEEECCCCH-----------HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHC
T ss_conf 9459997168734-----------28899999968985799997348749999999998498458855767799987531
Q ss_pred C-----CCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 7-----99999999998628988997588702688889988759628828757149989998605889999999987898
Q gi|254780439|r 68 P-----ITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLA 142 (1162)
Q Consensus 68 P-----lt~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip 142 (1162)
| .-.+.+.+++.....|-++.+.=|--||.-+..--+.|- .++=.|.|++-.++ .+|.+..++.|..
T Consensus 70 ~~~~v~~G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK------~iaLANKEsLV~aG--~l~~~~~k~~g~~ 141 (385)
T COG0743 70 PGTEVLVGEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGK------TIALANKESLVTAG--ELVMDAAKESGAQ 141 (385)
T ss_pred CCCEEEECHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHCCC------CEEECCHHHHHCCH--HHHHHHHHHCCCE
T ss_conf 476586437789999846777877420310121377999998288------12434533531250--9999999973987
Q ss_pred CCC
Q ss_conf 886
Q gi|254780439|r 143 TPK 145 (1162)
Q Consensus 143 ~~~ 145 (1162)
+.|
T Consensus 142 llP 144 (385)
T COG0743 142 LLP 144 (385)
T ss_pred EEC
T ss_conf 705
No 492
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.22 E-value=5.9 Score=17.42 Aligned_cols=38 Identities=13% Similarity=-0.042 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCEEE
Q ss_conf 88899999879815697505687810788986798549
Q gi|254780439|r 1064 EGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHL 1101 (1162)
Q Consensus 1064 ~GTa~~L~~~Gi~~~~v~k~~e~~~~i~d~i~~~~i~l 1101 (1162)
.|..+.|++.|.+-...---.++.+..++.|++|.+..
T Consensus 200 ~Ga~~Al~~~G~~~~v~vvg~d~~~~~~~~i~~G~~~~ 237 (275)
T cd06317 200 RGALNAAKEAGLAGGIVIVGANNFAVGYEAIRAGKYYG 237 (275)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEE
T ss_conf 99999999749989987998798099999998599839
No 493
>PRK06223 malate dehydrogenase; Reviewed
Probab=71.17 E-value=5.9 Score=17.41 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=41.7
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC--EEEEECCCCCEEE-CCCCCCCCEEECCCCHHHH--HHHHHHHCC
Q ss_conf 9999767754205054666888999999998797--8999748765010-7845131004337999999--999986289
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGY--RIILVNSNPATIM-TDPDLADATYTEPITPEVV--AKIIEKERP 83 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi--~vVlVNsNpaTi~-TD~~~aD~vY~ePlt~e~v--~~Ii~~E~p 83 (1162)
||-|||+|.. |+....+|...|+ +.+|++-|+.-.. ---|+.|...+.|.+.... .+.-.....
T Consensus 2 KI~IiGaG~V-----------G~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~da 70 (312)
T PRK06223 2 KISIIGAGNV-----------GATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYADIAGS 70 (312)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCC
T ss_conf 7999996989-----------99999999857998748997699973367988876514336888479837888995799
Q ss_pred CEEEECCC
Q ss_conf 88997588
Q gi|254780439|r 84 DAILPTTG 91 (1162)
Q Consensus 84 DaIlp~~G 91 (1162)
|-|+.+-|
T Consensus 71 DiVVitag 78 (312)
T PRK06223 71 DVVIITAG 78 (312)
T ss_pred CEEEEECC
T ss_conf 99999067
No 494
>PRK07894 consensus
Probab=71.04 E-value=6 Score=17.39 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 576279816866899999999999999987413
Q gi|254780439|r 873 SGDSACSLPSRSLSQQLKDELISQTKALAGALN 905 (1162)
Q Consensus 873 SGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~ 905 (1162)
.|+.+.+.||.++++++++++.+.-....++|+
T Consensus 398 ~~n~i~l~PPL~it~~eid~~~~~l~eal~~lg 430 (430)
T PRK07894 398 FRNLVYAMPPYICTPAEIAQITSAMVEVARALG 430 (430)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 499999979946899999999999999999609
No 495
>pfam01008 IF-2B Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Probab=71.03 E-value=6 Score=17.39 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=42.2
Q ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 74189972763020147665318999999999659806996068652112324586379841678899999987485678
Q gi|254780439|r 618 RKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGE 697 (1162)
Q Consensus 618 ~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~ 697 (1162)
+-+|+|.=|-|+. | .-..++.|.+.|+.+.+|.-|- |+.--..+|++. +-.+.|+ ..|
T Consensus 133 ~f~V~v~EsrP~~--~-------G~~~a~~L~~~gI~~t~i~dsa--~~~~m~~vd~Vi---vGAd~v~-------~nG- 190 (281)
T pfam01008 133 RFRVIVTESRPRL--Q-------GRLTAKELVQAGIPVTLITDSA--VGYVMQEVDKVI---VGADRIL-------ANG- 190 (281)
T ss_pred EEEEEEECCCCCC--C-------HHHHHHHHHHCCCCCEEEEHHH--HHHHHHHCCEEE---ECHHHHC-------CCC-
T ss_conf 0799996689740--1-------3899999985799968960538--999850188899---7554413-------799-
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 2279984451246689888887598386127
Q gi|254780439|r 698 LVGIIVQFGGQTPLKLSKILEKNQIPILGTQ 728 (1162)
Q Consensus 698 ~~~vi~q~gGqt~~~la~~L~~~gv~ilGts 728 (1162)
+++.-.|. ..+|.--..+|++++=..
T Consensus 191 --~v~nk~GT---~~iA~~Ak~~~vPv~V~a 216 (281)
T pfam01008 191 --GIANKIGT---YQLALLAKAHNVPFYVVA 216 (281)
T ss_pred --CEEECHHH---HHHHHHHHHCCCCEEEEC
T ss_conf --87441202---999999864499789986
No 496
>PRK07094 biotin synthase; Provisional
Probab=70.95 E-value=6 Score=17.38 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 89999999996598069960686521123245863798416788999999874856782279984451246689888887
Q gi|254780439|r 640 CCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEK 719 (1162)
Q Consensus 640 ~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi~q~gGqt~~~la~~L~~ 719 (1162)
-.+.+++..++.|+.++.+-+- | |. + .+.|.+.+|++.=+-.. -..+-.++|-.+.-. ...|.+
T Consensus 74 eI~~~A~~a~~~G~~~~~lqsG-~---------~~-~---~~~e~~~~ii~~Ik~~~-~l~i~lSlG~l~~e~-~~~Lk~ 137 (323)
T PRK07094 74 EILECAKKAYELGYGTIVLQSG-E---------DP-Y---YTDEKIADIIKEIKKEL-DVAITLSLGERSYEE-YKAWKE 137 (323)
T ss_pred HHHHHHHHHHHCCCCEEEEECC-C---------CC-C---CCHHHHHHHHHHHHHCC-CCEEEEECCCCCHHH-HHHHHH
T ss_conf 9999999999869988999648-9---------98-8---66999999999986059-945997578799999-999998
Q ss_pred CCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 5983861275203310286789998887098668542112156655565536971675134444
Q gi|254780439|r 720 NQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVL 783 (1162)
Q Consensus 720 ~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~iGyPVLVRPSyVL 783 (1162)
+|+.-.=...+ +-||..|.++. | .......-+.+..++++||+|=-.--+.+
T Consensus 138 AG~dry~~nlE----Ts~~~~y~~i~-------p-~~t~~~Rl~~l~~~k~~G~~v~sG~iiGl 189 (323)
T PRK07094 138 AGADRYLLRHE----TADRELYEKLH-------P-GMSFENRIQCLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred CCCCEEECCCC----CCCHHHHCCCC-------C-CCCHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 59774412456----56989867758-------9-99989999999999983981043027798
No 497
>PRK08275 putative oxidoreductase; Provisional
Probab=70.91 E-value=6 Score=17.37 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=26.1
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCC
Q ss_conf 9997677542050546668889999999987--97899974876
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEE--GYRIILVNSNP 51 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~--Gi~vVlVNsNp 51 (1162)
|||||||.- |..|.-+++|. |.+|++|..-+
T Consensus 12 VLVIGsG~A-----------Gl~AAi~a~~~~~~~~V~li~K~~ 44 (554)
T PRK08275 12 ILVIGGGTA-----------GPMAAIKAKERNPALRVLLLEKAN 44 (554)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899997199-----------999999999868989799997999
No 498
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.63 E-value=6 Score=17.40 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=27.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999767754205054666888999999998797899974876
Q gi|254780439|r 9 TLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 9 kvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
||+|+|+|++ |+--.-.|.+.|.+|.++--++
T Consensus 2 kI~IiGaGai-----------G~~~a~~L~~ag~~V~li~r~~ 33 (307)
T PRK06522 2 KIAILGAGAI-----------GGLFGARLAQAGHDVTLVARGA 33 (307)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCH
T ss_conf 8999991499-----------9999999984899889997888
No 499
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=70.57 E-value=4.1 Score=18.70 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=64.9
Q ss_pred EECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 97276302014766531899999999965980699606865211232458637984167889999998748567822799
Q gi|254780439|r 623 ILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGII 702 (1162)
Q Consensus 623 VlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~g~~~~vi 702 (1162)
+||.+-+ ||-+.. +--++..+.+ .|-.=| .+..=|.|..|-.-.|+.++.+..+.+.-+ . =+
T Consensus 234 llG~~~i-IG~S~h---~~ee~~~A~~-~gaDYi-------g~Gpvf~T~TK~~~~p~Gl~~l~~~~~~~~-i-----Pv 295 (345)
T PRK02615 234 LLGPEKI-IGRSTT---NPEELAKAIA-EGADYI-------GVGPVFPTPTKPGKAPAGLEYLKYARKEAN-I-----PW 295 (345)
T ss_pred HCCCCCE-EEECCC---CHHHHHHHHH-CCCCEE-------EECCEEECCCCCCCCCCCHHHHHHHHHHCC-C-----CE
T ss_conf 7399918-996179---9999999986-399979-------988774258888888789999999998379-9-----99
Q ss_pred EECCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHH
Q ss_conf 844512466898888875983861275203310286789998887
Q gi|254780439|r 703 VQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLME 747 (1162)
Q Consensus 703 ~q~gGqt~~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~ 747 (1162)
+-.||=++.|+..-+ +.|+.-+--. .+|-.++|...-.+.+.+
T Consensus 296 vAIGGI~~~N~~~v~-~aGa~gvAVi-sAI~~A~DP~~aa~~ll~ 338 (345)
T PRK02615 296 FAIGGIDKSNISEVL-QAGADRVAVV-RAIMNAEDPKQATQELLE 338 (345)
T ss_pred EEECCCCHHHHHHHH-HCCCCEEEEE-HHHHCCCCHHHHHHHHHH
T ss_conf 999996999999999-8599999982-285579999999999999
No 500
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=70.32 E-value=6.2 Score=17.28 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5569999767754205054666888999999998797899974876
Q gi|254780439|r 6 DLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNP 51 (1162)
Q Consensus 6 dikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNp 51 (1162)
|+.-||+-|.-+| -.+.++++.|++.|+++++|-+||
T Consensus 14 DlDGvl~~G~~~i---------pga~e~l~~L~~~g~~~iflTNn~ 50 (269)
T COG0647 14 DLDGVLYRGNEAI---------PGAAEALKRLKAAGKPVIFLTNNS 50 (269)
T ss_pred CCCCCEEECCCCC---------CHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 0767168389238---------159999999998699399995899
Done!