HHsearch alignment for GI: 254780439 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=7.6e-42 Score=349.14 Aligned_cols=207 Identities=43% Similarity=0.652 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88999999998789888620002344333332333333344444444333322211111123344444445544489999
Q gi|254780439|r 128 DRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAV 207 (1162)
Q Consensus 128 dR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 207 (1162)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~---------------------------------------------------~~~s~ee 29 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAG---------------------------------------------------PVETEEE 29 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCC---------------------------------------------------CCCCHHH
T ss_conf 9899999999869891998788---------------------------------------------------8799999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEEEEECCCCEEE
Q ss_conf 9999987199699941326786645111699999999998998579----982798664499789999999728998899
Q gi|254780439|r 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASP----TTEVLIEESVLGWKEYELEMMRDIKGNCIV 283 (1162)
Q Consensus 208 a~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~----~~~vlIeksl~g~kEiE~eVirD~~gn~i~ 283 (1162)
T Consensus 30 ~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~ 109 (211)
T pfam02786 30 ALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCIT 109 (211)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEE
T ss_conf 99999985997899737778998751241277899999999875143169983899740477658999999827998999
Q ss_pred EEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHH
Q ss_conf 96300000010000101343373228988999999999999987183457646899995589849998504443103578
Q gi|254780439|r 284 VCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSAL 363 (1162)
Q Consensus 284 v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssal 363 (1162)
T Consensus 110 ~~~~~~~~~--~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~-~G~~~vef~~~~~~~~~~~iEvNpR~~~~~~~ 186 (211)
T pfam02786 110 VCNRECSDQ--RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGY-VGAGTVEFALDPFSGEYYFIEMNTRLQVSHAL 186 (211)
T ss_pred EEEEEEEEE--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE-ECCCEEEEEEECCCCEEEEEECCCCCCCHHHH
T ss_conf 996332250--335844468179999999999999999998752644-23324789996799959999670896834778
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8876346147677764134461013
Q gi|254780439|r 364 ASKATGFPIAKIAAKLAVGYTLDEL 388 (1162)
Q Consensus 364 askatgypia~vaakl~~G~~L~ei 388 (1162)
T Consensus 187 t~~~tg~~l~~~~~~~a~G~~l~e~ 211 (211)
T pfam02786 187 AEKATGYDLAKEAAKIALGYPLPEL 211 (211)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 8998794899999999779997869