HHsearch alignment for GI: 254780439 and conserved domain: pfam06849

>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=96.03  E-value=0.027  Score=35.98  Aligned_cols=112  Identities=18%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCCC-CEEECCCCCCCCEEECCCCHHHHHHHH--HHHCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             888999999998797899974876-501078451310043379999999999--86289889975887026888899887
Q gi|254780439|r   28 YSGTQACKALKEEGYRIILVNSNP-ATIMTDPDLADATYTEPITPEVVAKII--EKERPDAILPTTGGQTALNTALSLKR  104 (1162)
Q Consensus        28 ys~~qa~~alke~Gi~vVlVNsNp-aTi~TD~~~aD~vY~ePlt~e~v~~Ii--~~E~pDaIlp~~GGqtalnl~~~L~e  104 (1162)
T Consensus         7 HSALqIl~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~~~q~~L~~~N~I~IPhgSfv~-----Y~G~   81 (124)
T pfam06849         7 HSALQILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVVDKFKDILDEEVQQKLRENNAIFIPHGSFVA-----YVGY   81 (124)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEECCCCEEE-----EECH
T ss_conf             03989972388739957899817975213326867379995658998729999999988979974888467-----6558


Q ss_pred             CCCHHHHCCEEECCCHHHHHHHC-CHHHHHHHHHHCCCCCCCC
Q ss_conf             59628828757149989998605-8899999999878988862
Q gi|254780439|r  105 MGVLDRYGVEMIGAKPETIDKAE-DRSLFSKAMQNIPLATPKS  146 (1162)
Q Consensus       105 ~gil~~~~v~~lG~~~~~I~~~e-dR~~F~~~l~~~gip~~~s  146 (1162)
T Consensus        82 ~~ie~~~~VP~FGNR--~lLrwEseR~~~~~lLe~Agi~~Pk~  122 (124)
T pfam06849        82 DRVENEFKVPIFGNR--NLLRWESERDKERKLLEKAGIRYPKK  122 (124)
T ss_pred             HHHHHCCCCCEECCH--HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             998602788700478--88887653677999999769999835