HHsearch alignment for GI: 254780439 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.88 E-value=1.1e-20 Score=181.49 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=155.5
Q ss_pred HHHHCCCCCCCCCCCCCHH----HHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8887098668542112156----655565536971675134444565412554899999999975210132211112233
Q gi|254780439|r 744 LLMELDLNQPRNGISHSVE----HARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPN 819 (1162)
Q Consensus 744 ll~~l~i~~p~~~~a~s~e----ea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~ 819 (1162)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~------------- 67 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQ------------- 67 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-------------
T ss_conf 9556599999908982532343579999986599889998999986687999584687999999874-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCHHCCC------CCCEEEEECCCCCCHHHHHHH
Q ss_conf 33333345577774567022012010010102307984999852011021524------576279816866899999999
Q gi|254780439|r 820 DKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIH------SGDSACSLPSRSLSQQLKDEL 893 (1162)
Q Consensus 820 ~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~v~I~gimEHiE~aGVH------SGDS~~v~PpqsLs~~~~~~i 893 (1162)
T Consensus 68 ----------~~~~vlVEefi~-G~E~~v~vl~~~-~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i 135 (201)
T pfam07478 68 ----------YDNKVLIEEAIE-GREIECAVLGNE-DLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQI 135 (201)
T ss_pred ----------CCCCEEEEECCC-CCEEEEEEEECC-CEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHH
T ss_conf ----------598079998566-967999997089-80898758994377502676801368723761566859999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE-CCCEEEEEEECCCCC--C--CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998741335762478851-288599985244445--6--304567773988999999998
Q gi|254780439|r 894 ISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRAS--R--TVPFIAKAIGFPVAKVAARII 953 (1162)
Q Consensus 894 ~~~t~~ia~~L~v~G~~NIQfa~-kd~~iYVIEvNpRaS--R--tvPfvSKatG~pl~~iAt~v~ 953 (1162)
T Consensus 136 ~~~A~~~~~aLg~~g~~rvD~~~d~~g~~~vlEvN~~Pg~~~~s~~~~~a~~~G~sy~~l~~~iv 200 (201)
T pfam07478 136 QELALKAYKALGCRGLARIDFFLTEDGEIYLNEVNTMPGFTSISLYPRMWAAAGLSYPDLIDQLI 200 (201)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999984887605799999689949999954979998676999999981999999999985