HHsearch alignment for GI: 254780440 and conserved domain: PRK06342

>PRK06342 transcription elongation factor regulatory protein; Validated.
Probab=100.00  E-value=3.2e-32  Score=226.06  Aligned_cols=134  Identities=31%  Similarity=0.510  Sum_probs=121.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             84314889999999999999872489999999999751762224304899988768799999999744442104721013
Q gi|254780440|r    3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS   82 (158)
Q Consensus         3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~   82 (158)
T Consensus        27 ~~NYvTP~G~~~L~~el~~l~--------~~~~~a~~~~d~~~~------k~~l~~i~R~iRyl~~Rl~~A~vv~~~~-~   91 (160)
T PRK06342         27 HPNLVTEAGLKALEDQLQQAR--------AAYEAAQAIEDVNER------RRQMARPLRDLRYLAARVRTAQLMPDPP-S   91 (160)
T ss_pred             CCCEECHHHHHHHHHHHHHHH--------HHHHHHHHCCCHHHH------HHHHHHHHHHHHHHHHHHHCCEEECCCC-C
T ss_conf             876108999999999999999--------999987516531576------8876326688999999872178848999-8


Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf             32111365799953476523599996310133458815013178998728888878999828971999999989
Q gi|254780440|r   83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL  156 (158)
Q Consensus        83 ~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~  156 (158)
T Consensus        92 ~d~V~FGatVt~~~-e~g~~~t~~IVG~dEaD~~~g~IS~~SPlaraLlgk~vGD~V~v----G~~~~EI~~Is  160 (160)
T PRK06342         92 TDVVAFGSTVTFSR-DDGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDVVGV----GGQELEIIAIA  160 (160)
T ss_pred             CCEEEEEEEEEEEE-CCCCEEEEEEECHHHCCCCCCEEECCCHHHHHHHCCCCCCEEEE----CCEEEEEEEEC
T ss_conf             99899835999992-89999999996834447358967535989999838999998998----88279999859