HHsearch alignment for GI: 254780440 and conserved domain: PRK06342
>PRK06342 transcription elongation factor regulatory protein; Validated.
Probab=100.00 E-value=3.2e-32 Score=226.06 Aligned_cols=134 Identities=31% Similarity=0.510 Sum_probs=121.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 84314889999999999999872489999999999751762224304899988768799999999744442104721013
Q gi|254780440|r 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 (158)
Q Consensus 3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~ 82 (158)
T Consensus 27 ~~NYvTP~G~~~L~~el~~l~--------~~~~~a~~~~d~~~~------k~~l~~i~R~iRyl~~Rl~~A~vv~~~~-~ 91 (160)
T PRK06342 27 HPNLVTEAGLKALEDQLQQAR--------AAYEAAQAIEDVNER------RRQMARPLRDLRYLAARVRTAQLMPDPP-S 91 (160)
T ss_pred CCCEECHHHHHHHHHHHHHHH--------HHHHHHHHCCCHHHH------HHHHHHHHHHHHHHHHHHHCCEEECCCC-C
T ss_conf 876108999999999999999--------999987516531576------8876326688999999872178848999-8
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 32111365799953476523599996310133458815013178998728888878999828971999999989
Q gi|254780440|r 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 83 ~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
T Consensus 92 ~d~V~FGatVt~~~-e~g~~~t~~IVG~dEaD~~~g~IS~~SPlaraLlgk~vGD~V~v----G~~~~EI~~Is 160 (160)
T PRK06342 92 TDVVAFGSTVTFSR-DDGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDVVGV----GGQELEIIAIA 160 (160)
T ss_pred CCEEEEEEEEEEEE-CCCCEEEEEEECHHHCCCCCCEEECCCHHHHHHHCCCCCCEEEE----CCEEEEEEEEC
T ss_conf 99899835999992-89999999996834447358967535989999838999998998----88279999859