HHsearch alignment of GI: 254780440 and MMDB domain: 1grj_A_84-158
>1grj_A (A:84-158) GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli}
Probab=99.86 E-value=3.2e-22 Score=161.94 Aligned_cols=75 Identities=45% Similarity=0.884 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
++|.|||+|+++|.+++++++|+||||+|+|++.|+||+.||||+||||+++||+|+|++|+|+++|+|++|+||
T Consensus 1 ~~V~~g~~V~l~~~~~~~~~~~~iV~p~ea~~~~g~IS~~SPlG~ALlG~~~Gd~v~~~~p~g~~~~~I~~I~yi 75 (75)
T 1grj_A 1 GRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 75 (75)
T ss_dssp SBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------CCEEEEEEECC
T ss_pred CEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEC
T ss_conf 817641389999547641799980254312365413046898999972899999899983998689999999979