HHsearch results for GI: 254780440 and protein with PDBid: 1grj_A

>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=100.00  E-value=0  Score=331.89  Aligned_cols=157  Identities=45%  Similarity=0.815  Sum_probs=153.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             98431488999999999999987248999999999975176222430489998876879999999974444210472101
Q gi|254780440|r    2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM   81 (158)
Q Consensus         2 ~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~   81 (158)
                      |+++|||++||++|++||++|++++||++++.+++|+++|||||||+|++||++|+++++||++|+.+|++|+|++++..
T Consensus         1 m~~i~lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~A~~~GDl~Enaey~aAk~~~~~~e~ri~~l~~~l~~a~ivd~~~~   80 (158)
T 1grj_A            1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKM   80 (158)
T ss_dssp             -CCEEEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf             98527799999999999999986301778988999886578222646899999999999999999976413499757668


Q ss_pred             CC-CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf             33-211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r   82 SG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI  158 (158)
Q Consensus        82 ~~-~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi  158 (158)
                      +. ++|.|||+|++.|.+++++.+|+||||+|+||+.++||+.||||+||||+++||+|+|.+|+|...|+|++|+||
T Consensus        81 ~~~~~V~~Gs~V~l~d~~~~~~~~~~ivg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~I~~I~y~  158 (158)
T 1grj_A           81 PNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL  158 (158)
T ss_dssp             CCCSBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------CCEEEEEEECC
T ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEECCHHHHCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEC
T ss_conf             999979951399999868854899998680553176883347787899983898999899983997489999999989