HHsearch results for GI: 254780440 and protein with PDBid: 2pn0_A

>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=99.96  E-value=8.2e-30  Score=209.33  Aligned_cols=114  Identities=26%  Similarity=0.360  Sum_probs=103.2

Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCC
Q ss_conf             99751762224304899988768799999999744442104721013321113657999534765235999963101334
Q gi|254780440|r   36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV  115 (158)
Q Consensus        36 ~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~  115 (158)
                      +++-++||.||+.|+++++        +.+|+.+|++|+||++++.+.++|.|||+|+++|.+++++.+|+||||+|+|+
T Consensus        15 D~~rL~~l~e~~~~~~~~~--------~~eLe~~L~~A~Iv~~~~~~~~~V~~Gs~V~~~~~~~~~~~~~~iV~~~ead~   86 (141)
T 2pn0_A           15 DAERLEILLETLSQNAFPG--------RDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT   86 (141)
T ss_dssp             HHHHHHHHHHHTTTCCCTT--------HHHHHHHHHTCEEECGGGSCTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCS
T ss_pred             HHHHHHHHHHCCCCCCCHH--------HHHHHHHHCCCEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEEECHHHCCC
T ss_conf             9999999985412127577--------99999987587998975589998985879999976883389999969257067


Q ss_pred             CCCEECCCCHHHHHHCCCCCCCEEEEECCCC-EEEEEEEEEEE
Q ss_conf             5881501317899872888887899982897-19999999897
Q gi|254780440|r  116 QSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW  157 (158)
Q Consensus       116 ~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G-~~~~~Il~I~y  157 (158)
                      ..++||+.||||+||||+++||+|+|++|+| .+.|+|++|.|
T Consensus        87 ~~~~IS~~SPlG~ALlG~~~Gd~v~v~~P~G~~~~~~I~~I~y  129 (141)
T 2pn0_A           87 SGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY  129 (141)
T ss_dssp             SSCEEETTSTTHHHHTTCBTTCEEEEECTTSSEEEEEEEEEEC
T ss_pred             CCCEEECCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf             6885632799999972899999999987999889999999986