HHsearch results for GI: 254780440 and protein with PDBid: 2pn0_A
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=99.96 E-value=8.2e-30 Score=209.33 Aligned_cols=114 Identities=26% Similarity=0.360 Sum_probs=103.2
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCC
Q ss_conf 99751762224304899988768799999999744442104721013321113657999534765235999963101334
Q gi|254780440|r 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 (158)
Q Consensus 36 ~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~ 115 (158)
+++-++||.||+.|+++++ +.+|+.+|++|+||++++.+.++|.|||+|+++|.+++++.+|+||||+|+|+
T Consensus 15 D~~rL~~l~e~~~~~~~~~--------~~eLe~~L~~A~Iv~~~~~~~~~V~~Gs~V~~~~~~~~~~~~~~iV~~~ead~ 86 (141)
T 2pn0_A 15 DAERLEILLETLSQNAFPG--------RDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT 86 (141)
T ss_dssp HHHHHHHHHHHTTTCCCTT--------HHHHHHHHHTCEEECGGGSCTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCS
T ss_pred HHHHHHHHHHCCCCCCCHH--------HHHHHHHHCCCEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEEECHHHCCC
T ss_conf 9999999985412127577--------99999987587998975589998985879999976883389999969257067
Q ss_pred CCCEECCCCHHHHHHCCCCCCCEEEEECCCC-EEEEEEEEEEE
Q ss_conf 5881501317899872888887899982897-19999999897
Q gi|254780440|r 116 QSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 (158)
Q Consensus 116 ~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G-~~~~~Il~I~y 157 (158)
..++||+.||||+||||+++||+|+|++|+| .+.|+|++|.|
T Consensus 87 ~~~~IS~~SPlG~ALlG~~~Gd~v~v~~P~G~~~~~~I~~I~y 129 (141)
T 2pn0_A 87 SGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 129 (141)
T ss_dssp SSCEEETTSTTHHHHTTCBTTCEEEEECTTSSEEEEEEEEEEC
T ss_pred CCCEEECCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf 6885632799999972899999999987999889999999986