HHSEARCH alignment of GI: 254780440 and SCOP domain: d1grja1

Alignment

Probab=99.90  E-value=4.9e-24  Score=171.06  Aligned_cols=78  Identities=46%  Similarity=0.761  Sum_probs=75.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             843148899999999999998724899999999997517622243048999887687999999997444421047210
Q gi|254780440|r    3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST   80 (158)
Q Consensus         3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~   80 (158)
                      ++||||++||++|++||++|++++||+++++|++||++|||||||||++||++|+++++||.+|+..|++|+|||++.
T Consensus         1 e~iplT~eg~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~a~IId~sk   78 (78)
T d1grja1           1 QAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTK   78 (78)
T ss_dssp             CCEEEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCC
T ss_conf             998988999999999999998833799999999999848863337789999999999999999999982763328999

SCOP domain information

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: GreA transcript cleavage protein, N-terminal domain
family: GreA transcript cleavage protein, N-terminal domain
domain: GreA transcript cleavage protein, N-terminal domain
species: Escherichia coli [TaxId: 562]