HHSEARCH alignment of GI: 254780440 and SCOP domain: d2f23a1

Alignment
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.86  E-value=3.4e-22  Score=159.35  Aligned_cols=75  Identities=24%  Similarity=0.400  Sum_probs=71.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8431488999999999999987248999999999975176222430489998876879999999974444210472
Q gi|254780440|r    3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI   78 (158)
Q Consensus         3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~   78 (158)
                      .++|||++||++|++||++| +++||++++.|++||++|||||||+||+||++|+++++||.+|+..|++|+||+.
T Consensus         1 k~i~lT~eg~~kL~~EL~~l-~~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~~~e~rI~eLe~~L~~a~IId~   75 (75)
T d2f23a1           1 REVKLTKAGYERLMQQLERE-RERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEE   75 (75)
T ss_dssp             CCEEECHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCT
T ss_pred             CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCC
T ss_conf             97355799999999999999-8457999999999987084432447999999999999999999998701321279


SCOP domain information

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: GreA transcript cleavage protein, N-terminal domain
family: GreA transcript cleavage protein, N-terminal domain
domain: GreA transcript cleavage protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]