HHSEARCH alignment of GI: 254780440 and SCOP domain: d2f23a2

Alignment

Probab=99.83  E-value=1.4e-20  Score=149.09  Aligned_cols=75  Identities=32%  Similarity=0.647  Sum_probs=72.3

Q ss_pred             CCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCC--EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf             3321113657999534765235999963101334588--15013178998728888878999828971999999989
Q gi|254780440|r   82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL  156 (158)
Q Consensus        82 ~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~--~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~  156 (158)
                      +.|+|.|||+|+++|.+++++.+|+||||+|+|+..+  +||+.||||+||||+++||+|+|.+|+|.++|+|++|.
T Consensus         2 ~~d~V~~Gs~V~l~~~~~~~~~~~~lVg~~e~d~~~~~~~IS~~SPlG~ALlGk~~Gd~v~v~~p~g~~~~~Il~I~   78 (79)
T d2f23a2           2 SGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAIH   78 (79)
T ss_dssp             CSCCCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEECCEEEEEECCCCCEEEEEEECHHHCCCCCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEE
T ss_conf             99999859899999999998999999791570723496174366988999748999999999859987999999998

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: GreA transcript cleavage factor, C-terminal domain
domain: GreA transcript cleavage factor, C-terminal domain
species: Thermus thermophilus [TaxId: 274]