BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] (158 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] gi|254040117|gb|ACT56913.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] Length = 158 Score = 316 bits (810), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV Sbjct: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 >gi|315122111|ref|YP_004062600.1| transcription elongation factor GreA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495513|gb|ADR52112.1| transcription elongation factor GreA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 Score = 289 bits (740), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 141/158 (89%), Positives = 151/158 (95%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR+YGDLSENAEYQAAKELQ++NE Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARSYGDLSENAEYQAAKELQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELENI T AEVIDIS MSG ++AFGATVSLV++ SGDKKNYQIVGDQEADVQSGLV Sbjct: 61 GRIAELENITTCAEVIDISKMSGSKVAFGATVSLVDETSGDKKNYQIVGDQEADVQSGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKELGD +SVNAPGG+K YEILQVLWI Sbjct: 121 SISSPIARALIGKELGDTVSVNAPGGQKNYEILQVLWI 158 >gi|190892720|ref|YP_001979262.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CIAT 652] gi|238692510|sp|B3PUK3|GREA_RHIE6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|190697999|gb|ACE92084.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CIAT 652] gi|327192705|gb|EGE59642.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CNPAF512] Length = 158 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 112/157 (71%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|209550295|ref|YP_002282212.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238058236|sp|B5ZXG2|GREA_RHILW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|209536051|gb|ACI55986.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 158 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 111/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|86358571|ref|YP_470463.1| transcription elongation factor GreA [Rhizobium etli CFN 42] gi|123738296|sp|Q2K600|GREA_RHIEC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|86282673|gb|ABC91736.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CFN 42] Length = 158 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 111/157 (70%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|241205678|ref|YP_002976774.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859568|gb|ACS57235.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 158 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 110/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTDEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|116253164|ref|YP_769002.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. viciae 3841] gi|7387717|sp|O68546|GREA_RHILV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123081835|sp|Q1MDR7|GREA_RHIL3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2944085|gb|AAC05214.1| transcription elongation factor homolog [Rhizobium leguminosarum] gi|115257812|emb|CAK08910.1| putative transcription elongation factor [Rhizobium leguminosarum bv. viciae 3841] Length = 158 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|227822120|ref|YP_002826091.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234] gi|227341120|gb|ACP25338.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234] Length = 255 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 111/157 (70%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 98 MVDKVPMTQGGFANLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 157 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 158 GRVSELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKAGRI 217 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 218 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 254 >gi|218671794|ref|ZP_03521463.1| transcription elongation factor GreA [Rhizobium etli GR56] Length = 158 Score = 233 bits (593), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 110/157 (70%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGHKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|47716785|gb|AAT37570.1| GreA [Sinorhizobium meliloti] Length = 163 Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 111/157 (70%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 6 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G + Sbjct: 66 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 126 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 162 >gi|15965326|ref|NP_385679.1| transcription elongation factor GreA [Sinorhizobium meliloti 1021] gi|150396472|ref|YP_001326939.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419] gi|307307952|ref|ZP_07587677.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|307317183|ref|ZP_07596624.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|7387719|sp|P56894|GREA_RHIME RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042248|sp|A6U8X4|GREA_SINMW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|6224910|gb|AAF06007.1|AF193023_1 GreA [Sinorhizobium meliloti] gi|15074506|emb|CAC46152.1| Transcription elongation factor [Sinorhizobium meliloti 1021] gi|51451367|gb|AAU03120.1| GreA [Sinorhizobium meliloti] gi|150027987|gb|ABR60104.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419] gi|306897271|gb|EFN28016.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306901568|gb|EFN32171.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 158 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/157 (70%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G + Sbjct: 61 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 157 >gi|13472314|ref|NP_103881.1| transcription elongation factor GreA [Mesorhizobium loti MAFF303099] gi|25453003|sp|Q98I49|GREA_RHILO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|14023060|dbj|BAB49667.1| transcriptional elongation factor [Mesorhizobium loti MAFF303099] Length = 157 Score = 230 bits (586), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 139/157 (88%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAEVID++ +SGD++ FGATV LV++++ +KK YQIVGDQEADV+SG +S Sbjct: 61 RVNELEDLIARAEVIDVTKLSGDKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157 >gi|222086556|ref|YP_002545090.1| transcription elongation factor (transcript cleavage factor) protein [Agrobacterium radiobacter K84] gi|254799543|sp|B9J753|GREA_AGRRK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221724004|gb|ACM27160.1| transcription elongation factor (transcript cleavage factor) protein [Agrobacterium radiobacter K84] Length = 158 Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSG +I FGA V L+++++ ++K+YQIVGDQEADV++G + Sbjct: 61 GRIGELEDLTARAEVIDLTKMSGSKIKFGAKVKLIDEDTEEEKSYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL + W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKAYEILSISW 157 >gi|15889462|ref|NP_355143.1| transcription elongation factor GreA [Agrobacterium tumefaciens str. C58] gi|25452989|sp|Q8UDE5|GREA_AGRT5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|15157330|gb|AAK87928.1| transcription elongation facto [Agrobacterium tumefaciens str. C58] Length = 158 Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 110/157 (70%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID+S MSG +I FGATV L++++S ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157 >gi|260464000|ref|ZP_05812195.1| transcription elongation factor GreA [Mesorhizobium opportunistum WSM2075] gi|259030171|gb|EEW31452.1| transcription elongation factor GreA [Mesorhizobium opportunistum WSM2075] Length = 158 Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 108/158 (68%), Positives = 139/158 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNE Sbjct: 1 MMNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ I RAEVID++ +SG+++ FGATV LV++++ +KK YQIVGDQEADV+SG + Sbjct: 61 GRVNELEDYIARAEVIDVTKLSGEKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 SISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 158 >gi|319781954|ref|YP_004141430.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167842|gb|ADV11380.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 157 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 138/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGD+I FGATV LV++++ +KK Y+IVGDQEADV+SG +S Sbjct: 61 RVNELEDYIARAEVIDVSKLSGDKIKFGATVVLVDEDTEEKKTYRIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157 >gi|222149296|ref|YP_002550253.1| transcription elongation factor GreA [Agrobacterium vitis S4] gi|254799544|sp|B9JYZ7|GREA_AGRVS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221736280|gb|ACM37243.1| transcription elongation facto [Agrobacterium vitis S4] Length = 158 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQNGFSKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID+S MSG +I FGATV L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRVSELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDTDEEKIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARA+IGKE GD I V APGG K YEI+ V W Sbjct: 121 SISSPIARAMIGKEAGDSIEVVAPGGSKAYEIIAVNW 157 >gi|14041681|emb|CAC38777.1| GreA protein [Rhizobium tropici] Length = 158 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGSKIKFGAKVKLVDEDTEEEKIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL + W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILSITW 157 >gi|325293542|ref|YP_004279406.1| transcription elongation factor GreA [Agrobacterium sp. H13-3] gi|325061395|gb|ADY65086.1| transcription elongation factor GreA [Agrobacterium sp. H13-3] Length = 158 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID+S MSG +I FGATV L++++S +++ YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEERIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157 >gi|163761166|ref|ZP_02168243.1| transcription elongation factor (transcript cleavage factor) protein [Hoeflea phototrophica DFL-43] gi|162281717|gb|EDQ32011.1| transcription elongation factor (transcript cleavage factor) protein [Hoeflea phototrophica DFL-43] Length = 158 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 107/157 (68%), Positives = 132/157 (84%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T G+ K+Q+ELRWRQQ ERPRII+AISEARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGYTKLQEELRWRQQSERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ +RAE+ID+S MSGD + FGATVSLV++++ ++K YQIVGDQEADV+ G + Sbjct: 61 GRIGELEDYTSRAEIIDVSKMSGDTVKFGATVSLVDEDTDEEKTYQIVGDQEADVKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPI+RALIGK +GD I V APGG K YEIL V W Sbjct: 121 SISSPISRALIGKSVGDSIEVVAPGGSKAYEILAVKW 157 >gi|319408896|emb|CBI82553.1| transcription elongation factor GreA [Bartonella schoenbuchensis R1] Length = 157 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTTGFENLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGDRI FGAT+ L+ +++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGDRIKFGATIKLLNEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI+++ +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKIQYI 157 >gi|49474490|ref|YP_032532.1| transcription elongation factor GreA [Bartonella quintana str. Toulouse] gi|81646921|sp|Q6FZ57|GREA_BARQU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|49239994|emb|CAF26408.1| Transcription elongation factor greA [Bartonella quintana str. Toulouse] Length = 157 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|110634467|ref|YP_674675.1| transcription elongation factor GreA [Mesorhizobium sp. BNC1] gi|123353513|sp|Q11GG5|GREA_MESSB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|110285451|gb|ABG63510.1| transcription elongation factor GreA [Chelativorans sp. BNC1] Length = 157 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 103/156 (66%), Positives = 138/156 (88%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G++ +++ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTLAGYESLKEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE++I RAEVID++ +SGD + FGATV LV++++ ++K YQIVGDQEADV+SG +S Sbjct: 61 RISELEDLIARAEVIDVTKLSGDTVKFGATVVLVDEDTEEEKTYQIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD+I VNAPGG + YE+L+V + Sbjct: 121 ISSPIARALIGKGVGDLIEVNAPGGARGYEVLRVQY 156 >gi|237815897|ref|ZP_04594894.1| transcription elongation factor GreA [Brucella abortus str. 2308 A] gi|237789195|gb|EEP63406.1| transcription elongation factor GreA [Brucella abortus str. 2308 A] Length = 203 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|163867955|ref|YP_001609159.1| transcription elongation factor GreA [Bartonella tribocorum CIP 105476] gi|189042236|sp|A9IRC3|GREA_BART1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|161017606|emb|CAK01164.1| transcription elongation factor GreA [Bartonella tribocorum CIP 105476] Length = 157 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKIGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|148560214|ref|YP_001259382.1| transcription elongation factor GreA [Brucella ovis ATCC 25840] gi|148371471|gb|ABQ61450.1| transcription elongation factor GreA [Brucella ovis ATCC 25840] Length = 203 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIQFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|319898512|ref|YP_004158605.1| transcription elongation factor GreA [Bartonella clarridgeiae 73] gi|319402476|emb|CBI76019.1| transcription elongation factor GreA [Bartonella clarridgeiae 73] Length = 157 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 102/157 (64%), Positives = 138/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGDRI FGAT++L+++ + ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG + YEI+++ +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI 157 >gi|240850162|ref|YP_002971555.1| transcription elongation factor GreA [Bartonella grahamii as4aup] gi|240267285|gb|ACS50873.1| transcription elongation factor GreA [Bartonella grahamii as4aup] Length = 157 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 103/157 (65%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID++ +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVTRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKVGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|17986791|ref|NP_539425.1| transcription elongation factor GreA [Brucella melitensis bv. 1 str. 16M] gi|23502373|ref|NP_698500.1| transcription elongation factor GreA [Brucella suis 1330] gi|62290393|ref|YP_222186.1| transcription elongation factor GreA [Brucella abortus bv. 1 str. 9-941] gi|82700315|ref|YP_414889.1| transcription elongation factor GreA [Brucella melitensis biovar Abortus 2308] gi|161619451|ref|YP_001593338.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|163843758|ref|YP_001628162.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|189024618|ref|YP_001935386.1| transcription elongation factor GreA [Brucella abortus S19] gi|225852983|ref|YP_002733216.1| transcription elongation factor GreA [Brucella melitensis ATCC 23457] gi|254689690|ref|ZP_05152944.1| transcription elongation factor GreA [Brucella abortus bv. 6 str. 870] gi|254694180|ref|ZP_05156008.1| transcription elongation factor GreA [Brucella abortus bv. 3 str. Tulya] gi|254697833|ref|ZP_05159661.1| transcription elongation factor GreA [Brucella abortus bv. 2 str. 86/8/59] gi|254702221|ref|ZP_05164049.1| transcription elongation factor GreA [Brucella suis bv. 5 str. 513] gi|254704756|ref|ZP_05166584.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686] gi|254730722|ref|ZP_05189300.1| transcription elongation factor GreA [Brucella abortus bv. 4 str. 292] gi|256045124|ref|ZP_05448025.1| transcription elongation factor GreA [Brucella melitensis bv. 1 str. Rev.1] gi|256061556|ref|ZP_05451698.1| transcription elongation factor GreA [Brucella neotomae 5K33] gi|256114061|ref|ZP_05454831.1| transcription elongation factor GreA [Brucella melitensis bv. 3 str. Ether] gi|256257941|ref|ZP_05463477.1| transcription elongation factor GreA [Brucella abortus bv. 9 str. C68] gi|256263538|ref|ZP_05466070.1| transcription elongation factor grea [Brucella melitensis bv. 2 str. 63/9] gi|256369920|ref|YP_003107431.1| transcription elongation factor GreA [Brucella microti CCM 4915] gi|260546930|ref|ZP_05822669.1| transcription elongation factor grea [Brucella abortus NCTC 8038] gi|260565274|ref|ZP_05835758.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|260565998|ref|ZP_05836468.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40] gi|260755224|ref|ZP_05867572.1| transcription elongation factor grea [Brucella abortus bv. 6 str. 870] gi|260758444|ref|ZP_05870792.1| transcription elongation factor grea [Brucella abortus bv. 4 str. 292] gi|260762270|ref|ZP_05874613.1| transcription elongation factor grea [Brucella abortus bv. 2 str. 86/8/59] gi|260884238|ref|ZP_05895852.1| transcription elongation factor grea [Brucella abortus bv. 9 str. C68] gi|261214487|ref|ZP_05928768.1| transcription elongation factor grea [Brucella abortus bv. 3 str. Tulya] gi|261325565|ref|ZP_05964762.1| transcription elongation factor grea [Brucella neotomae 5K33] gi|261752795|ref|ZP_05996504.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513] gi|261755454|ref|ZP_05999163.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686] gi|265991559|ref|ZP_06104116.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. Rev.1] gi|265995396|ref|ZP_06107953.1| transcription elongation factor grea [Brucella melitensis bv. 3 str. Ether] gi|294852821|ref|ZP_06793494.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026] gi|297248778|ref|ZP_06932496.1| transcription elongation factor greA [Brucella abortus bv. 5 str. B3196] gi|306843149|ref|ZP_07475769.1| transcription elongation factor GreA [Brucella sp. BO2] gi|306844505|ref|ZP_07477094.1| transcription elongation factor GreA [Brucella sp. BO1] gi|54037214|sp|P64272|GREA_BRUSU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041322|sp|P64271|GREA_BRUME RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|75496478|sp|Q57C09|GREA_BRUAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123768486|sp|Q2YRN8|GREA_BRUA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042237|sp|A9M6H1|GREA_BRUC2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042238|sp|B0CHU1|GREA_BRUSI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238689389|sp|B2S6W5|GREA_BRUA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799548|sp|C0REE0|GREA_BRUMB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|17982422|gb|AAL51689.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|23348356|gb|AAN30415.1| transcription elongation factor GreA [Brucella suis 1330] gi|62196525|gb|AAX74825.1| GreA, transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82616416|emb|CAJ11479.1| Prokaryotic transcription elongation factor GreA/GreB:Prokaryotic transcription elongation factor GreA [Brucella melitensis biovar Abortus 2308] gi|161336262|gb|ABX62567.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|163674481|gb|ABY38592.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|189020190|gb|ACD72912.1| transcription elongation factor GreA [Brucella abortus S19] gi|225641348|gb|ACO01262.1| transcription elongation factor GreA [Brucella melitensis ATCC 23457] gi|256000083|gb|ACU48482.1| transcription elongation factor GreA [Brucella microti CCM 4915] gi|260095980|gb|EEW79857.1| transcription elongation factor grea [Brucella abortus NCTC 8038] gi|260151342|gb|EEW86436.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|260155516|gb|EEW90596.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40] gi|260668762|gb|EEX55702.1| transcription elongation factor grea [Brucella abortus bv. 4 str. 292] gi|260672702|gb|EEX59523.1| transcription elongation factor grea [Brucella abortus bv. 2 str. 86/8/59] gi|260675332|gb|EEX62153.1| transcription elongation factor grea [Brucella abortus bv. 6 str. 870] gi|260873766|gb|EEX80835.1| transcription elongation factor grea [Brucella abortus bv. 9 str. C68] gi|260916094|gb|EEX82955.1| transcription elongation factor grea [Brucella abortus bv. 3 str. Tulya] gi|261301545|gb|EEY05042.1| transcription elongation factor grea [Brucella neotomae 5K33] gi|261742548|gb|EEY30474.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513] gi|261745207|gb|EEY33133.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686] gi|262766509|gb|EEZ12298.1| transcription elongation factor grea [Brucella melitensis bv. 3 str. Ether] gi|263002343|gb|EEZ14918.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. Rev.1] gi|263093566|gb|EEZ17591.1| transcription elongation factor grea [Brucella melitensis bv. 2 str. 63/9] gi|294821410|gb|EFG38409.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026] gi|297175947|gb|EFH35294.1| transcription elongation factor greA [Brucella abortus bv. 5 str. B3196] gi|306275116|gb|EFM56872.1| transcription elongation factor GreA [Brucella sp. BO1] gi|306286672|gb|EFM58230.1| transcription elongation factor GreA [Brucella sp. BO2] gi|326539229|gb|ADZ87444.1| transcription elongation factor GreA [Brucella melitensis M5-90] Length = 157 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|254719540|ref|ZP_05181351.1| transcription elongation factor GreA [Brucella sp. 83/13] gi|265984548|ref|ZP_06097283.1| transcription elongation factor grea [Brucella sp. 83/13] gi|306838479|ref|ZP_07471320.1| transcription elongation factor GreA [Brucella sp. NF 2653] gi|264663140|gb|EEZ33401.1| transcription elongation factor grea [Brucella sp. 83/13] gi|306406443|gb|EFM62681.1| transcription elongation factor GreA [Brucella sp. NF 2653] Length = 157 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQTERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|49475893|ref|YP_033934.1| transcription elongation factor GreA [Bartonella henselae str. Houston-1] gi|81647735|sp|Q6G2M7|GREA_BARHE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|49238701|emb|CAF27953.1| Transcription elongation factor greA [Bartonella henselae str. Houston-1] Length = 157 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 103/157 (65%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLS NAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQEERPRIIEAISEARAHGDLSGNAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIEVQYI 157 >gi|121602520|ref|YP_989263.1| transcription elongation factor GreA [Bartonella bacilliformis KC583] gi|189042235|sp|A1UTG0|GREA_BARBK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120614697|gb|ABM45298.1| transcription elongation factor GreA [Bartonella bacilliformis KC583] Length = 157 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 135/157 (85%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFETLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SG++I FGATV L+ +++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGNQIKFGATVKLLNEDTEEKKVYQIVGDQEADVKIGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE GD+I VNAPGG YEI+++ +I Sbjct: 121 ISSPIARALIGKEEGDVIEVNAPGGAHNYEIIKIQYI 157 >gi|153008990|ref|YP_001370205.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC 49188] gi|189042242|sp|A6WZH2|GREA_OCHA4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151560878|gb|ABS14376.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC 49188] Length = 157 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAE+ID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEIIDVSKLSGDRIKFGATVTMIDEDTDEEKVYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157 >gi|239832384|ref|ZP_04680713.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG 3301] gi|239824651|gb|EEQ96219.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG 3301] Length = 157 Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 102/157 (64%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLSGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157 >gi|225627946|ref|ZP_03785982.1| transcription elongation factor GreA [Brucella ceti str. Cudo] gi|225617109|gb|EEH14155.1| transcription elongation factor GreA [Brucella ceti str. Cudo] Length = 203 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 100/157 (63%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISS IARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|254708169|ref|ZP_05169997.1| transcription elongation factor GreA [Brucella pinnipedialis M163/99/10] gi|254710541|ref|ZP_05172352.1| transcription elongation factor GreA [Brucella pinnipedialis B2/94] gi|254714723|ref|ZP_05176534.1| transcription elongation factor GreA [Brucella ceti M644/93/1] gi|254717784|ref|ZP_05179595.1| transcription elongation factor GreA [Brucella ceti M13/05/1] gi|256032034|ref|ZP_05445648.1| transcription elongation factor GreA [Brucella pinnipedialis M292/94/1] gi|256160231|ref|ZP_05457925.1| transcription elongation factor GreA [Brucella ceti M490/95/1] gi|256255437|ref|ZP_05460973.1| transcription elongation factor GreA [Brucella ceti B1/94] gi|260169170|ref|ZP_05755981.1| transcription elongation factor GreA [Brucella sp. F5/99] gi|261219633|ref|ZP_05933914.1| transcription elongation factor grea [Brucella ceti M13/05/1] gi|261222642|ref|ZP_05936923.1| transcription elongation factor grea [Brucella ceti B1/94] gi|261315677|ref|ZP_05954874.1| transcription elongation factor grea [Brucella pinnipedialis M163/99/10] gi|261318115|ref|ZP_05957312.1| transcription elongation factor grea [Brucella pinnipedialis B2/94] gi|261322521|ref|ZP_05961718.1| transcription elongation factor grea [Brucella ceti M644/93/1] gi|261758684|ref|ZP_06002393.1| transcription elongation factor greA [Brucella sp. F5/99] gi|265989145|ref|ZP_06101702.1| transcription elongation factor grea [Brucella pinnipedialis M292/94/1] gi|265998607|ref|ZP_06111164.1| transcription elongation factor grea [Brucella ceti M490/95/1] gi|260921226|gb|EEX87879.1| transcription elongation factor grea [Brucella ceti B1/94] gi|260924722|gb|EEX91290.1| transcription elongation factor grea [Brucella ceti M13/05/1] gi|261295211|gb|EEX98707.1| transcription elongation factor grea [Brucella ceti M644/93/1] gi|261297338|gb|EEY00835.1| transcription elongation factor grea [Brucella pinnipedialis B2/94] gi|261304703|gb|EEY08200.1| transcription elongation factor grea [Brucella pinnipedialis M163/99/10] gi|261738668|gb|EEY26664.1| transcription elongation factor greA [Brucella sp. F5/99] gi|262553231|gb|EEZ09065.1| transcription elongation factor grea [Brucella ceti M490/95/1] gi|264661342|gb|EEZ31603.1| transcription elongation factor grea [Brucella pinnipedialis M292/94/1] Length = 157 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 100/157 (63%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISS IARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|326409521|gb|ADZ66586.1| transcription elongation factor GreA [Brucella melitensis M28] Length = 152 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/152 (65%), Positives = 133/152 (87%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEGR+ EL Sbjct: 1 MTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +SISSPI Sbjct: 61 EDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 152 >gi|323139044|ref|ZP_08074103.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242] gi|322395704|gb|EFX98246.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242] Length = 157 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 98/157 (62%), Positives = 133/157 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ G+ + +ELR RQQE+RPRII+ ISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPMTAPGYAALAEELRRRQQEDRPRIIQQISEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAEVID+S ++G I FGATV++V++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RIAELEDKLSRAEVIDVSKLTGSTIKFGATVTVVDEDTDEEKAYQIVGETEADVKSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARALIGK +GD + V PGG K+YEIL+V ++ Sbjct: 121 ITSPIARALIGKTVGDTVEVKTPGGGKSYEILKVAFV 157 >gi|182677861|ref|YP_001832007.1| transcription elongation factor GreA [Beijerinckia indica subsp. indica ATCC 9039] gi|238691231|sp|B2IHJ7|GREA_BEII9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|182633744|gb|ACB94518.1| transcription elongation factor GreA [Beijerinckia indica subsp. indica ATCC 9039] Length = 157 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 96/156 (61%), Positives = 133/156 (85%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T +G+ + +EL+ RQQEERPRII+AI+EAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKFPMTPEGYHALDEELKRRQQEERPRIIQAIAEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAE+ID+S +SG+ + FGATV+LV++++ ++K YQIVG+ EADV++G VS Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGNTVMFGATVTLVDEDTEEEKIYQIVGESEADVKAGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP ARALIGK++GD + VN PGG K+YEIL V + Sbjct: 121 ITSPTARALIGKKIGDSVEVNTPGGGKSYEILNVAF 156 >gi|296445401|ref|ZP_06887359.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] gi|296257162|gb|EFH04231.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] Length = 157 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 97/157 (61%), Positives = 131/157 (83%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ G+ + ELR RQQ ERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPMTAAGYAALDTELRHRQQTERPRIIQAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ ++RAEVID+S +SG I FGATV+LV++++ ++K YQIVG+ EAD ++G VS Sbjct: 61 RIADLEDKLSRAEVIDVSKLSGSTIKFGATVTLVDEDTEEEKAYQIVGEPEADAKNGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARALIGK+ GD + V PGG K+YEIL+V ++ Sbjct: 121 IASPIARALIGKKAGDTVEVKTPGGGKSYEILKVAFV 157 >gi|170741569|ref|YP_001770224.1| transcription elongation factor GreA [Methylobacterium sp. 4-46] gi|238688050|sp|B0U8M0|GREA_METS4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|168195843|gb|ACA17790.1| transcription elongation factor GreA [Methylobacterium sp. 4-46] Length = 158 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 93/157 (59%), Positives = 132/157 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G+ +++EL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPITIRGYAALEEELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I+RAE+ID+S +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RVLELESLISRAEIIDVSKLSGTKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SP+ARALIGK +GD + V PGG K+YEI+ + ++ Sbjct: 121 ITSPVARALIGKGVGDTVEVTTPGGGKSYEIVGIRYV 157 >gi|220924293|ref|YP_002499595.1| transcription elongation factor GreA [Methylobacterium nodulans ORS 2060] gi|254799562|sp|B8IBN8|GREA_METNO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219948900|gb|ACL59292.1| transcription elongation factor GreA [Methylobacterium nodulans ORS 2060] Length = 158 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 132/156 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF ++QEL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPITIRGFAALEQELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I+RAEVID++ +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RVLELESLISRAEVIDVAKLSGSKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK +GD + V+ PGG K+YEI+ + + Sbjct: 121 ITSPVARALIGKGVGDTVEVSTPGGGKSYEIVGISF 156 >gi|114704985|ref|ZP_01437893.1| transcription elongation factor (transcript cleavage factor) protein [Fulvimarina pelagi HTCC2506] gi|114539770|gb|EAU42890.1| transcription elongation factor (transcript cleavage factor) protein [Fulvimarina pelagi HTCC2506] Length = 157 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 104/154 (67%), Positives = 136/154 (88%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T++GF+ +++ELR RQQEERPRII+AISEARA+GDLSENAEY AAKE Q+LNEGR+ Sbjct: 3 KVPMTTRGFETLKEELRRRQQEERPRIIQAISEARAHGDLSENAEYHAAKEAQSLNEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +ELE++ RAEVID+S MSGD++ FGATV LV++ + +++ +QIVGDQEADV+SG +SIS Sbjct: 63 SELEDVTARAEVIDVSKMSGDKVMFGATVKLVDEETEEERLFQIVGDQEADVKSGRISIS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD + V APGG ++YE+L+VLW Sbjct: 123 SPIARALIGKEEGDTVEVAAPGGARSYEVLEVLW 156 >gi|158422770|ref|YP_001524062.1| transcription elongation factor GreA [Azorhizobium caulinodans ORS 571] gi|189042232|sp|A8HR94|GREA_AZOC5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|158329659|dbj|BAF87144.1| transcription elongation factor [Azorhizobium caulinodans ORS 571] Length = 157 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 96/156 (61%), Positives = 131/156 (83%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF +++ELR+RQQ ERPRII AISEARA+GDLSENAEY AAKELQ+LNEG Sbjct: 1 MEKIPMTGAGFVALEEELRFRQQVERPRIISAISEARAHGDLSENAEYHAAKELQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ I+RAEVID+S +SGD + FGATV+LV++++ +++ +QIVGD EAD ++G +S Sbjct: 61 RIAELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+ARALIGK+ G + V P G +++EI++V W Sbjct: 121 ISSPVARALIGKKKGSSVEVVTPKGARSFEIVEVRW 156 >gi|188580289|ref|YP_001923734.1| transcription elongation factor GreA [Methylobacterium populi BJ001] gi|179343787|gb|ACB79199.1| transcription elongation factor GreA [Methylobacterium populi BJ001] Length = 160 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/156 (60%), Positives = 127/156 (81%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG Sbjct: 3 IDKLPITARGYAALEEELKQRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VS Sbjct: 63 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD + V PGG K+YE++ V W Sbjct: 123 ISSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158 >gi|170747000|ref|YP_001753260.1| transcription elongation factor GreA [Methylobacterium radiotolerans JCM 2831] gi|170653522|gb|ACB22577.1| transcription elongation factor GreA [Methylobacterium radiotolerans JCM 2831] Length = 179 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/156 (61%), Positives = 128/156 (82%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G +++EL+ RQQ ER RII+AI+EARA GDLSENAEY AAKE Q+ NEG Sbjct: 22 IDKVPITVRGLAALEEELKHRQQVERQRIIQAIAEARALGDLSENAEYHAAKEAQSHNEG 81 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAEVID++ +SGDRI FGATV LV++++ ++K YQIVG+ EADV+SG VS Sbjct: 82 RVLELESMIARAEVIDVTKLSGDRIKFGATVKLVDEDTEEEKTYQIVGEPEADVRSGRVS 141 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARALIGK +GD + V PGG K+YE++ V + Sbjct: 142 ITSPIARALIGKGVGDTVEVTTPGGGKSYEVVAVQY 177 >gi|254503831|ref|ZP_05115982.1| transcription elongation factor GreA subfamily [Labrenzia alexandrii DFL-11] gi|222439902|gb|EEE46581.1| transcription elongation factor GreA subfamily [Labrenzia alexandrii DFL-11] Length = 157 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/157 (61%), Positives = 129/157 (82%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS G+ +Q EL+ R ERPRI+ AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTSAGYTMLQSELKERTGVERPRIVDAISEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAE+ID+S +SGD + FGATVSLV++++ ++K Y IVGD E+DV+ VS Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGDVVKFGATVSLVDEDTEEEKKYMIVGDVESDVKQSKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK +GD + V APGG ++YEI++V +I Sbjct: 121 ISSPIARALIGKTVGDSVEVAAPGGARSYEIVEVQFI 157 >gi|163850521|ref|YP_001638564.1| transcription elongation factor GreA [Methylobacterium extorquens PA1] gi|218529218|ref|YP_002420034.1| transcription elongation factor GreA [Methylobacterium chloromethanicum CM4] gi|240137586|ref|YP_002962057.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens AM1] gi|254560057|ref|YP_003067152.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens DM4] gi|163662126|gb|ABY29493.1| transcription elongation factor GreA [Methylobacterium extorquens PA1] gi|218521521|gb|ACK82106.1| transcription elongation factor GreA [Methylobacterium chloromethanicum CM4] gi|240007554|gb|ACS38780.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens AM1] gi|254267335|emb|CAX23167.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens DM4] Length = 160 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 127/156 (81%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG Sbjct: 3 IDKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAE+ID S +SG +I FGA V L+++++ ++K YQ+VG+ EADV+ G VS Sbjct: 63 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLLDEDTEEEKTYQLVGEPEADVREGRVS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD + V PGG K+YE++ V W Sbjct: 123 ISSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158 >gi|46203896|ref|ZP_00050819.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 165 Score = 199 bits (507), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 127/156 (81%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG Sbjct: 8 IDKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 67 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VS Sbjct: 68 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVS 127 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD + V PGG K+YE++ + W Sbjct: 128 ISSPIARALIGKGVGDTVEVTTPGGGKSYEVVAIEW 163 >gi|304391328|ref|ZP_07373272.1| transcription elongation factor GreA [Ahrensia sp. R2A130] gi|303296684|gb|EFL91040.1| transcription elongation factor GreA [Ahrensia sp. R2A130] Length = 157 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/157 (61%), Positives = 123/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ E + R E+R RI+ AISEAR +GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTKPGHAALEAEYKRRTSEDRHRIVAAISEAREHGDLSENAEYHAAKEQQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAEVIDIS MSGD I FGATV L ++ +G++K+YQIVGDQEADV SG +S Sbjct: 61 RIMELEDVIARAEVIDISKMSGDTIRFGATVKLEDEQNGEEKHYQIVGDQEADVASGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPI+RALIGKE GD + V APGG + YEIL V ++ Sbjct: 121 ISSPISRALIGKEEGDSVEVAAPGGARAYEILSVQYV 157 >gi|319403838|emb|CBI77424.1| transcription elongation factor GreA [Bartonella rochalimae ATCC BAA-1498] gi|319406848|emb|CBI80483.1| transcription elongation factor GreA [Bartonella sp. 1-1C] Length = 157 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGTHNYEIIKVQYI 157 >gi|307944270|ref|ZP_07659611.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4] gi|307772616|gb|EFO31836.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4] Length = 157 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/157 (60%), Positives = 126/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ +Q+EL+ R ERPRI++AI+EARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTDGYAMLQEELKQRTSVERPRIVEAIAEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAEVID+S MSGD I FGATVSLV++++ ++K Y IVGD EADV+ +S Sbjct: 61 RVAELEDKLSRAEVIDVSKMSGDVIKFGATVSLVDEDTEEEKKYMIVGDVEADVKQHKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD + V APGG + YEI V ++ Sbjct: 121 ISSPIARALIGKTEGDSVEVAAPGGARAYEITAVEYV 157 >gi|319405277|emb|CBI78891.1| transcription elongation factor GreA [Bartonella sp. AR 15-3] Length = 157 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|118591047|ref|ZP_01548447.1| transcription elongation factor GreA [Stappia aggregata IAM 12614] gi|118436569|gb|EAV43210.1| transcription elongation factor GreA [Stappia aggregata IAM 12614] Length = 157 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 92/157 (58%), Positives = 128/157 (81%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS G+ +Q EL+ R ERPRI+ AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTSAGYKMLQDELKERTSVERPRIVDAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE+ ++RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD E+DV+ VS Sbjct: 61 RISELEDKLSRAEIIDVSKLSGDIVKFGATVTLIDEDTEEEKKYMIVGDVESDVKHNKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK +GD + V APGG ++YEI+ V +I Sbjct: 121 ISSPIARALIGKSIGDSVEVAAPGGARSYEIVDVRFI 157 >gi|90418035|ref|ZP_01225947.1| transcription elongation factor greA [Aurantimonas manganoxydans SI85-9A1] gi|90337707|gb|EAS51358.1| transcription elongation factor greA [Aurantimonas manganoxydans SI85-9A1] Length = 157 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/156 (66%), Positives = 132/156 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+D +++ELR RQQEERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTNHGYDALREELRRRQQEERPRIIAAISEARAHGDLSENAEYHAAKESQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE++ RAEVID++ MSG I FGATV L+++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RISELEDLTARAEVIDVTKMSGATIKFGATVKLIDEDTEEEKTYQIVGDQEADVKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK GD I V APGG ++YEIL+V W Sbjct: 121 ISSPIARALIGKTDGDTIEVAAPGGARSYEILEVRW 156 >gi|154246690|ref|YP_001417648.1| transcription elongation factor GreA [Xanthobacter autotrophicus Py2] gi|154160775|gb|ABS67991.1| transcription elongation factor GreA [Xanthobacter autotrophicus Py2] Length = 168 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 93/156 (59%), Positives = 128/156 (82%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G+ + QEL+ RQQ ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 12 MEKIPMTAAGYAALAQELKQRQQVERPRIISAISEARAHGDLSENAEYHAAKEQQSLNEG 71 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ ++RAEVID+S +SGD + FGATV+LV++++ ++K +QIVGD EAD ++G +S Sbjct: 72 RVADLEDKLSRAEVIDVSKLSGDIVKFGATVTLVDEDTEEEKVWQIVGDSEADAKAGRIS 131 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+ARALIGK+ G + V P G +++EI+ V W Sbjct: 132 ISSPVARALIGKKKGASVEVVTPKGARSFEIVAVRW 167 >gi|254470230|ref|ZP_05083634.1| transcription elongation factor GreA [Pseudovibrio sp. JE062] gi|211960541|gb|EEA95737.1| transcription elongation factor GreA [Pseudovibrio sp. JE062] Length = 157 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 93/156 (59%), Positives = 125/156 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G+ + +EL+ R ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTPEGYAMLTEELKHRTTGERPRIIAAISEARAHGDLSENAEYHAAKEQQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID++ +SGD + FGATVSLV++++ ++K Y IVGD EADV+ G +S Sbjct: 61 RINELEGLLGLAEVIDLTKLSGDTVKFGATVSLVDEDTEEEKKYMIVGDVEADVKRGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD + V APGG + YEI++V + Sbjct: 121 ISSPIARALIGKSVGDSVEVAAPGGARGYEIVEVEF 156 >gi|209884272|ref|YP_002288129.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] gi|209872468|gb|ACI92264.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] Length = 178 Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 92/157 (58%), Positives = 125/157 (79%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G +++EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 21 MVEKLPMTAAGHLALEEELKQRQAVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 80 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ I RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G + Sbjct: 81 GRIAELEDKIARADIIDVSKLSGDTIKFGATVTLIDEDTEKKAVYQIVGESEADAKKGRI 140 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 141 SITSPLARALIGKKKGTSVEVVAPGGAKAYEIAKVDW 177 >gi|27382489|ref|NP_774018.1| transcription elongation factor GreA [Bradyrhizobium japonicum USDA 110] gi|81734738|sp|Q89DR1|GREA_BRAJA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27355661|dbj|BAC52643.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110] Length = 157 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/156 (58%), Positives = 125/156 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS GF + +EL+ RQ E+RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTSAGFAALGEELKKRQSEDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + RA++IDIS +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S Sbjct: 61 RIAELEDKLARADIIDISKLSGDTIKFGATVTLVDEDTEKKAVWQIVGEVEADAKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK+ G + VNAPGG K YEI +V W Sbjct: 121 ITSPLARALIGKKKGSTVEVNAPGGAKAYEITKVEW 156 >gi|154252759|ref|YP_001413583.1| transcription elongation factor GreA [Parvibaculum lavamentivorans DS-1] gi|154156709|gb|ABS63926.1| transcription elongation factor GreA [Parvibaculum lavamentivorans DS-1] Length = 152 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/151 (61%), Positives = 125/151 (82%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G+ +++E+R+ + ERPRIIKAISEARA+GDLSENAEY AAKE Q LNE R+AEL Sbjct: 1 MTSEGYKSLEEEIRFLKSVERPRIIKAISEARAHGDLSENAEYHAAKEQQGLNESRVAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RAEVID+S +SGD + FGATV LV++++ ++ +YQIVG+ EADV+ G VSI+SPI Sbjct: 61 EDKISRAEVIDVSKLSGDTVMFGATVKLVDEDTEEEVSYQIVGEIEADVKQGRVSITSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK +GD + V PGG K+YEIL++ + Sbjct: 121 ARALIGKSVGDSVEVVTPGGGKSYEILKISF 151 >gi|217976860|ref|YP_002361007.1| transcription elongation factor GreA [Methylocella silvestris BL2] gi|217502236|gb|ACK49645.1| transcription elongation factor GreA [Methylocella silvestris BL2] Length = 152 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 90/151 (59%), Positives = 125/151 (82%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G ++ EL+ RQQ ERPRII+AI+EAR++GDLSENAEY +AKE Q+LNEGR+AEL Sbjct: 1 MTAAGHLALEDELKRRQQIERPRIIQAIAEARSHGDLSENAEYHSAKEAQSLNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ ++R+EVID+S +SG + FGATV+L+++++ +K YQIVG+ EADV+SG VSI+SP Sbjct: 61 EDKLSRSEVIDVSKLSGATVMFGATVTLIDEDTEAEKTYQIVGETEADVKSGRVSITSPT 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK++GD + V PGG K+YEIL+V + Sbjct: 121 ARALIGKKVGDTVEVTTPGGGKSYEILKVSF 151 >gi|299132015|ref|ZP_07025210.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] gi|298592152|gb|EFI52352.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] Length = 158 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/157 (57%), Positives = 124/157 (78%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G ++ EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKLPITAAGLVALEDELKQRQSVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTEKKVVYQIVGETEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YE+ +V W Sbjct: 121 SITSPLARALIGKKKGTSVEVVAPGGAKAYEVAKVDW 157 >gi|328542878|ref|YP_004302987.1| transcription elongation factor GreA [polymorphum gilvum SL003B-26A1] gi|326412624|gb|ADZ69687.1| transcription elongation factor GreA [Polymorphum gilvum SL003B-26A1] Length = 152 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 90/152 (59%), Positives = 123/152 (80%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ +Q EL+ R ERPRI++AISEARA+GDLSENAEY AAKE Q+ NEGR+AEL Sbjct: 1 MTAAGYAMLQAELKERTSVERPRIVEAISEARAHGDLSENAEYHAAKEAQSHNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ + RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD EADV+ G +SISSPI Sbjct: 61 EDKLGRAEIIDVSKLSGDTVKFGATVTLIDEDTEEEKQYMIVGDVEADVKQGKISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK +GD + V+APGG ++YEI + +I Sbjct: 121 ARALIGKSVGDSVEVSAPGGSRSYEIEDIKFI 152 >gi|148258011|ref|YP_001242596.1| transcription elongation factor GreA [Bradyrhizobium sp. BTAi1] gi|229485760|sp|A5ER96|GREA_BRASB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146410184|gb|ABQ38690.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Bradyrhizobium sp. BTAi1] Length = 158 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 126/157 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+TS G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTSGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA+VID++ +SG+ I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADVIDVTKLSGETIKFGATVTLIDEDTEKKTVWQIVGEVEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK++G + V APGG K+YEI +V W Sbjct: 121 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 157 >gi|312114890|ref|YP_004012486.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC 17100] gi|311220019|gb|ADP71387.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC 17100] Length = 159 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/158 (57%), Positives = 127/158 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+P+T++G ++ ELR + ER RIIKAI+EAR++GDLSENAEY AAKE Q +NE Sbjct: 1 MSEKVPMTAQGHAALEAELRILRSVERQRIIKAIAEARSHGDLSENAEYHAAKEAQGMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE+ ++RAEVIDIS +SG+ + FGATV+LV++++ ++ YQIVGD EADV++G V Sbjct: 61 AKVADLEDKLSRAEVIDISKLSGETVKFGATVTLVDEDTEEEVKYQIVGDLEADVRNGKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGK+ GD + VN P G K+YEIL+V ++ Sbjct: 121 SIGSPIARALIGKKAGDSVEVNTPRGAKSYEILKVEFL 158 >gi|146338409|ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS278] gi|146191215|emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Bradyrhizobium sp. ORS278] Length = 188 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 87/157 (55%), Positives = 126/157 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 31 MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID++ +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 91 GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK++G + V APGG K+YEI +V W Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 187 >gi|162149110|ref|YP_001603571.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] gi|161787687|emb|CAP57283.1| Transcription elongation factor greA [Gluconacetobacter diazotrophicus PAl 5] Length = 157 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 124/154 (80%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+ Sbjct: 3 KFPMTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+S Sbjct: 63 LELEDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 123 SPLAKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 156 >gi|144897958|emb|CAM74822.1| Prokaryotic transcription elongation factor GreA [Magnetospirillum gryphiswaldense MSR-1] Length = 157 Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ ELR + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPAGLTTLEDELRNLKAVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE++I+RA+VIDI+ MSGD++ FGATV+L +++S D+ Y IVG EAD++SG +S Sbjct: 61 RVAELEDVISRAQVIDIALMSGDQVRFGATVTLADEDSDDEVVYTIVGAHEADIKSGRMS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ARALIGK +GD + V PGG K+YE++ V ++ Sbjct: 121 VHSPLARALIGKHIGDTVEVTTPGGSKSYEVVDVRFV 157 >gi|91975935|ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] gi|91682391|gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] Length = 165 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/157 (56%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 8 MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 68 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK G + V APGG K YEI +V W Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164 >gi|300023325|ref|YP_003755936.1| transcription elongation factor GreA [Hyphomicrobium denitrificans ATCC 51888] gi|299525146|gb|ADJ23615.1| transcription elongation factor GreA [Hyphomicrobium denitrificans ATCC 51888] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/156 (58%), Positives = 120/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T +G+ ++ EL+ + ERPRII AISEARA+GDLSENAEY AAKE Q LNE Sbjct: 1 MERVPMTIEGYKNLETELQRLKAVERPRIIAAISEARAHGDLSENAEYHAAKEQQGLNEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ I RAEVID S +SGD + FGATV+L +++S DK Y IVGD EAD+++G +S Sbjct: 61 RVAELEDKINRAEVIDTSKLSGDTVKFGATVTLQDEDSEDKVTYTIVGDTEADLKNGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK G+ + V P G +T E+L+V W Sbjct: 121 ISSPIARALIGKTNGESVDVTTPKGTRTLEVLKVSW 156 >gi|85715963|ref|ZP_01046940.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A] gi|85697161|gb|EAQ35042.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A] Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/158 (56%), Positives = 122/158 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIMFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SP+ARALIGK+ G + V APGG K YEI +V W+ Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEWL 158 >gi|197106054|ref|YP_002131431.1| transcription elongation factor GreA [Phenylobacterium zucineum HLK1] gi|238690169|sp|B4RH54|GREA_PHEZH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|196479474|gb|ACG79002.1| transcription elongation factor GreA [Phenylobacterium zucineum HLK1] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 127/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYKALDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ + RA+VID+S +SG+++ FGATVSL+++++ ++ YQIVG+ EADV++G VS Sbjct: 61 QIAEIEDKMARAQVIDVSKLSGEQVKFGATVSLIDEDTEEEARYQIVGEHEADVKAGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARA+IGKE GD++ VN PGG K YEI +V W+ Sbjct: 121 VTSPIARAIIGKETGDVVEVNTPGGVKAYEITKVEWV 157 >gi|86748640|ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris HaA2] gi|86571668|gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] Length = 174 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/157 (56%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 17 MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 77 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK G + V APGG K YEI +V W Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173 >gi|330993911|ref|ZP_08317841.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1] gi|329758857|gb|EGG75371.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1] Length = 157 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + +YQIVG EAD++ GL+S Sbjct: 61 RIQELEEIVSSAEVIDPASLSGDQVKFGARVKLVDEETDREASYQIVGVYEADIKQGLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+A++LIGK +GD +SV APGG++TYEIL+V + Sbjct: 121 ISSPLAKSLIGKSIGDTVSVPAPGGDRTYEILEVTY 156 >gi|39937132|ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris CGA009] gi|192292967|ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris TIE-1] gi|81619506|sp|Q6N2H8|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229485904|sp|B3QJZ1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|39650990|emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris CGA009] gi|192286716|gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris TIE-1] Length = 158 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 87/157 (55%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEW 157 >gi|90425319|ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB18] gi|123394824|sp|Q20ZR6|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|90107333|gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 124/157 (78%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157 >gi|296116673|ref|ZP_06835283.1| transcription elongation factor GreA [Gluconacetobacter hansenii ATCC 23769] gi|295976885|gb|EFG83653.1| transcription elongation factor GreA [Gluconacetobacter hansenii ATCC 23769] Length = 157 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 120/154 (77%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EGR+ Sbjct: 3 KFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE I++ AEVID +++SGD++ FGA V LV++ + + YQIVG EAD++ GL+S+S Sbjct: 63 LELEEIVSSAEVIDPASLSGDQVKFGARVHLVDEETDKEATYQIVGVYEADIKQGLLSVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 123 SPLAKSLIGKSVGDTVSVPAPGGDRTYEILAVTY 156 >gi|316935637|ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315603351|gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 87/157 (55%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157 >gi|75676634|ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] gi|123773178|sp|Q3SPT8|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|74421504|gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/157 (56%), Positives = 121/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T G + EL+ RQ +RPRII+ I+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157 >gi|16127080|ref|NP_421644.1| transcription elongation factor GreA [Caulobacter crescentus CB15] gi|221235877|ref|YP_002518314.1| transcription elongation factor GreA [Caulobacter crescentus NA1000] gi|25453007|sp|Q9A4I3|GREA_CAUCR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799552|sp|B8H1V7|GREA_CAUCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13424460|gb|AAK24812.1| transcription elongation factor GreA [Caulobacter crescentus CB15] gi|220965050|gb|ACL96406.1| transcription elongation factor greA [Caulobacter crescentus NA1000] Length = 157 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 126/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ I RA+VID++ +SG ++ FGATVS+V++++ ++ YQIVGD EADV+SG +S Sbjct: 61 QIAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+G+++ VN PGG K YEIL+V W+ Sbjct: 121 LSSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157 >gi|92118375|ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14] gi|123386993|sp|Q1QJF3|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|91801269|gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 158 Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 121/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MIEKVPMTRGGHAALADELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEDQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RAE+ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157 >gi|254418720|ref|ZP_05032444.1| transcription elongation factor GreA subfamily [Brevundimonas sp. BAL3] gi|196184897|gb|EDX79873.1| transcription elongation factor GreA subfamily [Brevundimonas sp. BAL3] Length = 157 Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 124/156 (79%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYRVLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ I+RA+VID+S +SG ++ FGATV++V++++ D+ YQIVG+ EADV+ G VS Sbjct: 61 QIAEIEDKISRAQVIDVSKLSGSQVKFGATVTVVDEDTEDEARYQIVGEHEADVKKGKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARA+I KE+GD++ VN PGG K YEIL+V W Sbjct: 121 IASPIARAMISKEVGDVVEVNTPGGVKAYEILKVEW 156 >gi|115525956|ref|YP_782867.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisA53] gi|122295116|sp|Q07JJ7|GREA_RHOP5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|115519903|gb|ABJ07887.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisA53] Length = 160 Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 88/156 (56%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ +Q EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTANGYAALQVELKQRQTVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ + RA+VIDI+ +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S Sbjct: 61 RIADLEDKLARADVIDITKLSGDTIMFGATVTLVDEDTEKKAVWQIVGEPEADAKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 ITSPLARALIGKKKGASVEVMAPGGAKAYEITKVEW 156 >gi|167648248|ref|YP_001685911.1| transcription elongation factor GreA [Caulobacter sp. K31] gi|189042240|sp|B0SZ84|GREA_CAUSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167350678|gb|ABZ73413.1| transcription elongation factor GreA [Caulobacter sp. K31] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 124/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAGGYQTLDEELKRLKTIERPAVIAAISEARQHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+E+ I RA+VID+S +SG ++ FGATVS+V++++ ++ YQIVGD EADV+ G +S Sbjct: 61 RIAEIEDKIARAQVIDVSKLSGKQVKFGATVSVVDEDTEEESRYQIVGDHEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+G+++ V PGG K YEIL+V W+ Sbjct: 121 LSSPLSRAMIGKEVGEVVEVYTPGGVKAYEILKVEWV 157 >gi|83309802|ref|YP_420066.1| transcription elongation factor GreA [Magnetospirillum magneticum AMB-1] gi|82944643|dbj|BAE49507.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/156 (54%), Positives = 124/156 (79%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE+II+RA+VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S Sbjct: 61 RVSELEDIISRAQVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK LGD + V APGG K+YEI+ V + Sbjct: 121 VHSPLARALIGKHLGDTVEVTAPGGSKSYEIVDVRF 156 >gi|209545146|ref|YP_002277375.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] gi|209532823|gb|ACI52760.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] Length = 152 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 122/151 (80%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+ EL Sbjct: 1 MTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRILEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+SSP+ Sbjct: 61 EDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 121 AKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 151 >gi|58038799|ref|YP_190763.1| transcription elongation factor GreA [Gluconobacter oxydans 621H] gi|58001213|gb|AAW60107.1| Transcription elongation factor [Gluconobacter oxydans 621H] Length = 157 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 122/154 (79%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T+KG +++ ELR + +RP +I+AI+EAR +GDLSENAEY AA++ Q+ EGR+ Sbjct: 3 KIPMTAKGQQRLEDELRTLKSVDRPAVIRAIAEAREHGDLSENAEYHAARDRQSFIEGRV 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE II+ AEVID ST++G R+ FGA + LV++ + + YQIVG EAD++ GL+SIS Sbjct: 63 LELEGIISNAEVIDPSTLTGTRVRFGAHIELVDEETDKEALYQIVGVHEADIKQGLISIS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIGK++GD +SV APGG++TYEIL+V + Sbjct: 123 SPLAKALIGKDVGDSVSVPAPGGDRTYEILKVTY 156 >gi|209965306|ref|YP_002298221.1| transcription elongation factor GreA [Rhodospirillum centenum SW] gi|209958772|gb|ACI99408.1| transcription elongation factor GreA [Rhodospirillum centenum SW] Length = 157 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++GF ++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKVPMTARGFTRLQEELKQLKSVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I+RAEVID + +SG I FGATV+L ++++ ++ YQIVG E+D+++G +S Sbjct: 61 RVMELEDKISRAEVIDPTKLSGSAIKFGATVTLADEDTDEEVTYQIVGQDESDIKAGFIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK++GD + V PGG K+YEI + + Sbjct: 121 ITSPLARALIGKQVGDSVEVTTPGGSKSYEITGIQF 156 >gi|148259921|ref|YP_001234048.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5] gi|326403125|ref|YP_004283206.1| transcription elongation factor GreA [Acidiphilium multivorum AIU301] gi|166200647|sp|A5FWZ7|GREA_ACICJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146401602|gb|ABQ30129.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5] gi|325049986|dbj|BAJ80324.1| transcription elongation factor GreA [Acidiphilium multivorum AIU301] Length = 157 Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 119/154 (77%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G ++ ELR + EERP II+AI+EAR++GDLSENAEY +A+E Q+ EGR+ Sbjct: 3 KFPMTGPGLQNLEAELRHLKSEERPAIIRAIAEARSHGDLSENAEYHSARERQSFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AELE II+ AEVID ST+SGD + FGA V L+++ S + YQIVG EAD+++G +S++ Sbjct: 63 AELEEIISAAEVIDPSTLSGDTVKFGAHVELIDEESDKEVTYQIVGVHEADIKAGRISVT 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++LIGK+ GD +SV APGG+++YEIL V + Sbjct: 123 SPLAKSLIGKKPGDTVSVPAPGGDRSYEILAVRF 156 >gi|89070192|ref|ZP_01157520.1| transcription elongation factor GreA [Oceanicola granulosus HTCC2516] gi|89044208|gb|EAR50359.1| transcription elongation factor GreA [Oceanicola granulosus HTCC2516] Length = 156 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 122/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GFDK+ EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFDKLDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVID + MSG I FGATV LV++++ ++K+YQIVG+ EAD++ G ++ Sbjct: 61 RIKELEGVISLAEVIDPTRMSG-AIKFGATVELVDEDTDEEKSYQIVGEYEADIERGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ARALIGKE GD + V PGG+K YE+++V ++ Sbjct: 120 MKSPLARALIGKEEGDSVEVKTPGGDKAYEVVKVSYV 156 >gi|114328953|ref|YP_746110.1| transcription elongation factor GreA [Granulibacter bethesdensis CGDNIH1] gi|114317127|gb|ABI63187.1| transcription elongation factor greA [Granulibacter bethesdensis CGDNIH1] Length = 157 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 121/155 (78%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T+ G +++ ELR + ERP +I+AI+EAR++GDLSENAEY AA+E Q+ EGR+ Sbjct: 3 KFPMTAGGLQRLEDELRQLKSVERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE I++ AEVID ST+SGD++ FGA V +V++ + + +YQIVG EAD++ GL+S+S Sbjct: 63 EELEVIVSAAEVIDPSTLSGDQVKFGAHVQIVDEETDKEASYQIVGLHEADIKQGLLSVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+A+ALIGK+ GD ISV APGG+++YEIL V + Sbjct: 123 SPLAKALIGKKPGDTISVPAPGGDRSYEILSVRFF 157 >gi|83859439|ref|ZP_00952960.1| transcription elongation factor GreA [Oceanicaulis alexandrii HTCC2633] gi|83852886|gb|EAP90739.1| transcription elongation factor GreA [Oceanicaulis alexandrii HTCC2633] Length = 152 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 87/151 (57%), Positives = 118/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EGR+ EL Sbjct: 1 MTAEGHKALDEELKHLKSVERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEGRVQEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I RA+VID+S MSG ++ FGATV++V++++ + Y+IVGD EADV+SG +S+SSPI Sbjct: 61 EDKIARAQVIDVSKMSGTQVKFGATVTVVDEDTDQESTYKIVGDDEADVKSGKISLSSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA+I KE GD++ VNAPGG K+YEIL+V W Sbjct: 121 ARAMINKEEGDVVEVNAPGGVKSYEILKVEW 151 >gi|329890723|ref|ZP_08269066.1| transcription elongation factor greA [Brevundimonas diminuta ATCC 11568] gi|328846024|gb|EGF95588.1| transcription elongation factor greA [Brevundimonas diminuta ATCC 11568] Length = 157 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 84/156 (53%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +L+ + ERP +I AI+EAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYRSLDDQLKQLKSVERPSVIAAIAEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AE+E+ ++RA+VID+S +SGD++ FGATV+ V++++ ++ YQIVG+ EADV+ G +S Sbjct: 61 SIAEIEDKLSRAQVIDVSKLSGDQVKFGATVTFVDEDTEEEGVYQIVGEHEADVKLGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARALI KE+GD++ VN PGG K YEIL+V W Sbjct: 121 IASPIARALISKEVGDVVEVNTPGGVKAYEILKVEW 156 >gi|258542082|ref|YP_003187515.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01] gi|256633160|dbj|BAH99135.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01] gi|256636217|dbj|BAI02186.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-03] gi|256639272|dbj|BAI05234.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-07] gi|256642326|dbj|BAI08281.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-22] gi|256645381|dbj|BAI11329.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-26] gi|256648436|dbj|BAI14377.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-32] gi|256651489|dbj|BAI17423.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654480|dbj|BAI20407.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-12] Length = 157 Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157 >gi|329848667|ref|ZP_08263695.1| transcription elongation factor greA [Asticcacaulis biprosthecum C19] gi|328843730|gb|EGF93299.1| transcription elongation factor greA [Asticcacaulis biprosthecum C19] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 124/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G+ + EL+ + ERP +I AISEAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTVGGYKSLDDELKRLKSIERPAVIAAISEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A++E+ I+RA+VID++ +SG I FGATV++V++++ ++ YQ+VGD EADV+SG +S Sbjct: 61 QIADIEDKISRAQVIDVTKLSGQNIKFGATVTVVDEDTEEEGRYQVVGDHEADVRSGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+GD++ V PGG K YEIL+V WI Sbjct: 121 LSSPLSRAMIGKEVGDVVEVVTPGGVKAYEILKVEWI 157 >gi|329114165|ref|ZP_08242927.1| Transcription elongation factor GreA [Acetobacter pomorum DM001] gi|326696241|gb|EGE47920.1| Transcription elongation factor GreA [Acetobacter pomorum DM001] Length = 157 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKAEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157 >gi|296532781|ref|ZP_06895460.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC 49957] gi|296266889|gb|EFH12835.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC 49957] Length = 163 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V K P+T++G +++ ELR + EERP +I+AI+EARA+GDLSENAEY AA+E Q+ EG Sbjct: 7 VQKFPMTAEGLARLEDELRQLKAEERPAVIRAIAEARAHGDLSENAEYHAARERQSFIEG 66 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+I+ EVID + +SGD++ FGA V+++++ S ++K Y+IVG EAD + G +S Sbjct: 67 RIAELESIVPSVEVIDTTKLSGDQVRFGAYVTIIDEESEEEKTYRIVGAHEADTKLGSIS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+A+AL+GK+LGD + V APGG + YEI +V + Sbjct: 127 ISSPLAKALLGKKLGDSVEVPAPGGARAYEIAKVRF 162 >gi|83594219|ref|YP_427971.1| transcription elongation factor GreA [Rhodospirillum rubrum ATCC 11170] gi|123766955|sp|Q2RQB1|GREA_RHORT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|83577133|gb|ABC23684.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC 11170] Length = 157 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G +++ EL+ + +RP +I+AISEAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++ +RAEVIDIS +SGD + FGATVS+++++S ++ YQIVG EAD+++G +S Sbjct: 61 RIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEEQTTYQIVGAHEADLKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SPI +ALIGK++GD I V APGG K YE+ V + Sbjct: 121 VASPIGKALIGKKVGDSIEVKAPGGSKFYEVTMVRF 156 >gi|149913254|ref|ZP_01901788.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b] gi|149813660|gb|EDM73486.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b] Length = 156 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G ++ EL+ + EERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRRGHTALEVELKQLKSEERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+RAEVID + + G I FGATV+LV++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVISRAEVIDPTKLKGP-IKFGATVTLVDEDTDEEKTWQIVGEYEANIENGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD + V PGGEK+YE+L++ +I Sbjct: 120 MKSPIARALIGKEAGDSVEVRTPGGEKSYEVLKIEYI 156 >gi|294676071|ref|YP_003576686.1| transcription elongation factor GreA [Rhodobacter capsulatus SB 1003] gi|294474891|gb|ADE84279.1| transcription elongation factor GreA [Rhodobacter capsulatus SB 1003] Length = 156 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G+D + +EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGYDVLDEELKTLKSVERPAVIKAIAEAREHGDLSENAEYHAAREKQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+I+ RAEVID +SG I FGATV+LV++++ +++ YQIVG+ EAD++ GL++ Sbjct: 61 RIKELESILGRAEVIDTVKLSGS-IKFGATVTLVDEDTEEERTYQIVGEHEADLERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD + V PGG+++YEIL V ++ Sbjct: 120 IKSPLARALIGKDEGDSVEVRTPGGQRSYEILSVRFL 156 >gi|114570689|ref|YP_757369.1| transcription elongation factor GreA [Maricaulis maris MCS10] gi|122315542|sp|Q0AMQ6|GREA_MARMM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114341151|gb|ABI66431.1| transcription elongation factor GreA [Maricaulis maris MCS10] Length = 157 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 87/156 (55%), Positives = 120/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MNKIPMTVAGQIALDEELKRLKTIERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ + RA+VIDI+ MSGD + FGATV+++++++ + YQIVG+ E+DV+SG +S Sbjct: 61 RVQELEDKLARAQVIDITKMSGDTVKFGATVTVLDEDTEQESTYQIVGEDESDVKSGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIAR++I KE+GD+ VNAPGG K+YEI+ V W Sbjct: 121 ISSPIARSMINKEVGDVAEVNAPGGLKSYEIMSVSW 156 >gi|153004935|ref|YP_001379260.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5] gi|152028508|gb|ABS26276.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5] Length = 168 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 120/158 (75%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++P+T G ++++EL+ + ERP+I+K I+EAR++GDLSENAEY AAKE Q+ E Sbjct: 1 MSERVPMTKGGLLRLKEELKRLKNVERPKIVKEIAEARSHGDLSENAEYHAAKEKQSHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ++E+ I AEVID+S +GDR+ FGATVSL E SGD Y+IVG+ EAD++ G + Sbjct: 61 GRILQVEHWIASAEVIDVSKHAGDRVVFGATVSLEESESGDHVTYRIVGELEADLKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIG+E GD ++V PGG+K YEI + ++ Sbjct: 121 SVTSPIARALIGREEGDAVTVRTPGGQKEYEIQSISFV 158 >gi|86158153|ref|YP_464938.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774664|gb|ABC81501.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 166 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 118/155 (76%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EGR+ Sbjct: 3 RVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S++ Sbjct: 63 AQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDTESGDQVTYRIVGELEADLKQGKISVT 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIG+ GD + V +PGGEK YEI V ++ Sbjct: 123 SPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157 >gi|197122524|ref|YP_002134475.1| transcription elongation factor GreA [Anaeromyxobacter sp. K] gi|220917309|ref|YP_002492613.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-1] gi|238689850|sp|B4UCU9|GREA_ANASK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|196172373|gb|ACG73346.1| transcription elongation factor GreA [Anaeromyxobacter sp. K] gi|219955163|gb|ACL65547.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-1] Length = 166 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 118/155 (76%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EGR+ Sbjct: 3 RVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S++ Sbjct: 63 AQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKISVT 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIG+ GD + V +PGGEK YEI V ++ Sbjct: 123 SPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157 >gi|83854862|ref|ZP_00948392.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1] gi|83941385|ref|ZP_00953847.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36] gi|83842705|gb|EAP81872.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1] gi|83847205|gb|EAP85080.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36] Length = 156 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/156 (54%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRAGHTALETELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID + MSG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVISLADVIDPAKMSG-AIKFGATVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG+K+YE+L++++ Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDKSYEVLKIVY 155 >gi|117926297|ref|YP_866914.1| transcription elongation factor GreA [Magnetococcus sp. MC-1] gi|166200673|sp|A0LC15|GREA_MAGSM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|117610053|gb|ABK45508.1| transcription elongation factor GreA [Magnetococcus sp. MC-1] Length = 157 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 120/157 (76%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+P+T +G ++++EL+ R+ +R RII AI EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MNPKVPMTLEGAQQLKEELKRRKTTDRKRIIAAIEEARAHGDLSENAEYHAAKEQQSFNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A+LE ++ AEVID S ++ RI FGA V+++++++ ++ Y IVGD+EAD++ G + Sbjct: 61 GRIAKLEGMLASAEVIDTSRLNSSRIVFGAKVTVIDEDTEEESTYHIVGDEEADLEKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSP+AR +IGKE GD I V APGG + +E++++ + Sbjct: 121 SISSPMARGMIGKEAGDSIEVRAPGGTRHFEVVEITF 157 >gi|46202225|ref|ZP_00053548.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 152 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/151 (54%), Positives = 118/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EGR++EL Sbjct: 1 MTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEGRVSEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+II+RA VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S+ SP+ Sbjct: 61 EDIISRAHVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMSVHSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK LGD + V APGG K+YEI+ V + Sbjct: 121 ARALIGKHLGDTVEVTAPGGSKSYEIVDVKF 151 >gi|159045616|ref|YP_001534410.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL 12] gi|157913376|gb|ABV94809.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL 12] Length = 171 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 16 MEKIPMTRRGHSALDTELKQLKSVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++RA+VID +T+SG + FGATV++V++++ ++K YQIVG+ EAD++ GL++ Sbjct: 76 RVKELEALLSRAQVIDPATLSG-AVKFGATVTIVDEDTDEEKTYQIVGEAEADIEKGLLN 134 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG K+YEIL++ + Sbjct: 135 LKSPIARALIGKEEGDSVEVRTPGGTKSYEILEIAY 170 >gi|315497713|ref|YP_004086517.1| transcription elongation factor grea [Asticcacaulis excentricus CB 48] gi|315415725|gb|ADU12366.1| transcription elongation factor GreA [Asticcacaulis excentricus CB 48] Length = 152 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 81/152 (53%), Positives = 121/152 (79%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+ Sbjct: 1 MTVAGYQSLDDELKRLKSVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RA+VID+S +SG++I FGATV++V++++ ++ YQ+VG+ EADV++G +S+SSP+ Sbjct: 61 EDKISRAQVIDVSKLSGNQIKFGATVTVVDEDTEEEGRYQVVGEHEADVKAGRISLSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +RA+IGKE+GD++ VN P G K YEIL+V WI Sbjct: 121 SRAMIGKEVGDVVEVNTPAGVKAYEILKVEWI 152 >gi|163794418|ref|ZP_02188389.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199] gi|159180142|gb|EDP64665.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199] Length = 157 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/154 (51%), Positives = 115/154 (74%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ GF ++Q ELR + ERP +IKAI+EAR +GDLSENAEY AA++ Q+ EG Sbjct: 1 MDKVPITAIGFQRLQDELRQLKSVERPAVIKAIAEAREHGDLSENAEYHAARDRQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE++I+R EVIDI ++GD + FG TV + ++++ ++ Y IVG EAD+ G++S Sbjct: 61 RVAELEDVISRCEVIDIKKLTGDTVTFGVTVEVADEDTDEETKYTIVGPYEADLSKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SPIARALIGK +GD + V P G K+ EIL + Sbjct: 121 TASPIARALIGKRVGDSVEVATPRGAKSLEILSI 154 >gi|149202969|ref|ZP_01879940.1| transcription elongation factor GreA [Roseovarius sp. TM1035] gi|149143515|gb|EDM31551.1| transcription elongation factor GreA [Roseovarius sp. TM1035] Length = 156 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 122/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+LV+++SG+++ YQIVG+ EA ++ GL++ Sbjct: 61 RIKELEGILSLAEVIDPAKLSGP-IKFGATVTLVDEDSGEERTYQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGKE GD + V PGG++ YE+++V +I Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRGYEVIKVAYI 156 >gi|295688363|ref|YP_003592056.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756] gi|295430266|gb|ADG09438.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756] Length = 152 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 81/152 (53%), Positives = 120/152 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+ Sbjct: 1 MTVGGYQTLDEELKRLKTIERPSVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I RA+VID+S +SG ++ FGATVS++++++ ++ YQIVGD EADV+SG +S+SSP+ Sbjct: 61 EDKIARAQVIDVSKLSGKQVKFGATVSVIDEDTEEEARYQIVGDHEADVKSGRISLSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +RA+IGKE+G+++ VN PGG K YEI +V W+ Sbjct: 121 SRAMIGKEVGEVVEVNTPGGVKAYEITKVEWL 152 >gi|298292332|ref|YP_003694271.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296928843|gb|ADH89652.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 152 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/151 (56%), Positives = 119/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ RQQ +R RII AISEARA+GDLSENAEY AAKE Q LNEGR+AEL Sbjct: 1 MTPGGHAALEIELKQRQQVDRQRIISAISEARAHGDLSENAEYHAAKEQQALNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ ++RAE+ID++ +SGD + FGATV+L+++++ ++K++QIVGD EAD ++G +SISSP+ Sbjct: 61 EDKLSRAEIIDVAKLSGDTVMFGATVTLIDEDTEEEKSWQIVGDMEADAKAGRISISSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK+ G + V P G ++YEI V + Sbjct: 121 ARALIGKKRGTSVEVVTPKGARSYEIAAVRF 151 >gi|119383180|ref|YP_914236.1| transcription elongation factor GreA [Paracoccus denitrificans PD1222] gi|166200684|sp|A1AZ46|GREA_PARDP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119372947|gb|ABL68540.1| transcription elongation factor GreA [Paracoccus denitrificans PD1222] Length = 156 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 124/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G+D++ +ELR + +RP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGYDQLDEELRELRSVQRPAVIRAIAEAREHGDLSENAEYHAAREKQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++RAEVID + ++G I FGATV+LV+++S +++ YQIVG+ EAD++ GL++ Sbjct: 61 RIKELEMILSRAEVIDPTRLNGS-IKFGATVTLVDEDSEEERTYQIVGEAEADLERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGG K+YEI+ + ++ Sbjct: 120 IRSPLARALIGKDEGDSIEVVTPGGGKSYEIISIRYV 156 >gi|114321129|ref|YP_742812.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii MLHE-1] gi|122311293|sp|Q0A765|GREA_ALHEH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114227523|gb|ABI57322.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T++G +K+++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKVPLTARGAEKLREELQRLKTVERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + ++ ++ FGATV LV+++SG + YQIVG+ EAD++ GLV Sbjct: 61 RIQEIEGKLSNAQVIDPAAVNAQGKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GD+++V APGGE+ YEI++V + Sbjct: 121 SVNSPIARALIGKEEGDLVTVQAPGGEREYEIVEVRY 157 >gi|302382095|ref|YP_003817918.1| transcription elongation factor GreA [Brevundimonas subvibrioides ATCC 15264] gi|302192723|gb|ADL00295.1| transcription elongation factor GreA [Brevundimonas subvibrioides ATCC 15264] Length = 152 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 117/151 (77%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG +AE+ Sbjct: 1 MTAEGYRSLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEGSIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RA+VID+S +SGD++ FGATV++V++++ ++ YQIVG+ EADV+ G +SISSPI Sbjct: 61 EDKISRAQVIDVSKLSGDQVKFGATVTVVDEDTEEEGRYQIVGEHEADVKKGKISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA+I K +GD + VN PGG K YEIL+V W Sbjct: 121 ARAMISKAVGDTVEVNTPGGVKAYEILKVEW 151 >gi|254293474|ref|YP_003059497.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814] gi|254042005|gb|ACT58800.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814] Length = 157 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 119/155 (76%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T++G ++ EL+ + RP +I+AI+ AR +GDLSENAEY AAKE Q+ EGR+ Sbjct: 3 RIPMTAQGHQALEDELKHLKTVARPEVIQAIAVAREHGDLSENAEYHAAKESQSHIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL++ + RA+VID S +SGD I FGATV++V++++ ++ Y+IVG+ EA++ G +S+S Sbjct: 63 IELDSKLARAQVIDTSKLSGDNIKFGATVTVVDEDTEEEATYKIVGEDEANIADGKISLS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARA+IGKE GDI V+APGG KTYEIL V WI Sbjct: 123 SPLARAMIGKEEGDIAEVSAPGGAKTYEILDVKWI 157 >gi|126734602|ref|ZP_01750348.1| transcription elongation factor GreA [Roseobacter sp. CCS2] gi|126715157|gb|EBA12022.1| transcription elongation factor GreA [Roseobacter sp. CCS2] Length = 156 Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GFDK+ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTQAGFDKLDAELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID + +SG I FGATV+LV++++ ++K YQIVG+ EAD+++G ++ Sbjct: 61 RVKELEGVISLADVIDPTKLSG-TIKFGATVALVDEDTDEEKTYQIVGEYEADIENGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP++RALIGK+ GD + V PGG ++YEIL + + Sbjct: 120 MKSPLSRALIGKDEGDSVDVRTPGGVRSYEILSIAY 155 >gi|84515779|ref|ZP_01003140.1| transcription elongation factor GreA [Loktanella vestfoldensis SKA53] gi|84510221|gb|EAQ06677.1| transcription elongation factor GreA [Loktanella vestfoldensis SKA53] Length = 156 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GFDKI EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPLTRAGFDKIDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID S SG + FGATV LV++++ ++K Y IVG+ EAD++SG ++ Sbjct: 61 RVKELEGVISLADVIDPSKFSGP-VKFGATVLLVDEDTDEEKTYLIVGEYEADIESGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK+ GD I V+ PGG ++YEIL++ + Sbjct: 120 MKSPLARALIGKDEGDSIEVSTPGGVRSYEILKITY 155 >gi|114799104|ref|YP_759372.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC 15444] gi|122942711|sp|Q0C4H1|GREA_HYPNA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114739278|gb|ABI77403.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC 15444] Length = 157 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T++G +Q EL+ + ERP II AISEAR++GDLSENAEY AAKE Q+ EG Sbjct: 1 MERIPMTAEGHAALQAELKVLKSVERPSIIAAISEARSHGDLSENAEYHAAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++EL++ + RA+VID+S + G ++ FGATV++ + ++ D++ Y+IVG+ EADV+ G +S Sbjct: 61 RISELDDKLARADVIDVSKLGGSKVRFGATVTIADVDTEDEQTYKIVGEDEADVKQGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SPIARALIGKE GD V AP G + YE+++V++ Sbjct: 121 VTSPIARALIGKEEGDEAEVAAPAGARAYEVIKVVY 156 >gi|288957102|ref|YP_003447443.1| transcription elongation factor [Azospirillum sp. B510] gi|288909410|dbj|BAI70899.1| transcription elongation factor [Azospirillum sp. B510] Length = 157 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKVPMTAAGFNRLQEELKHLKITERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I+RAEVID + ++G + FGATV+L ++++ ++ YQIVG E+D+++ L+S Sbjct: 61 RVLELEDKISRAEVIDPAKLTGSTVKFGATVTLADQDTDEETTYQIVGQDESDIKNRLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARALI K +GD + V+ PGG K YEI+ V + Sbjct: 121 IQAPLARALINKSVGDSVEVSTPGGSKLYEIVSVEF 156 >gi|157804252|ref|YP_001492801.1| transcription elongation factor GreA [Rickettsia canadensis str. McKiel] gi|166200696|sp|A8F083|GREA_RICCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157785515|gb|ABV74016.1| transcription elongation factor GreA [Rickettsia canadensis str. McKiel] Length = 162 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDIS +SGD I FGATV+L++ ++ +K Y +VG+ EAD+ V Sbjct: 61 GRIKELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE+++V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVEVEY 157 >gi|163732327|ref|ZP_02139773.1| transcription elongation factor GreA [Roseobacter litoralis Och 149] gi|161394625|gb|EDQ18948.1| transcription elongation factor GreA [Roseobacter litoralis Och 149] Length = 156 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/156 (54%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 1 MDKIPMTRKGHTDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++ Sbjct: 61 RIKELEGVLGLAEVIDPSKMSG-TIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGEK YE+L++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGEKAYEVLKIVY 155 >gi|88812984|ref|ZP_01128227.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231] gi|88789762|gb|EAR20886.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231] Length = 158 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/153 (53%), Positives = 117/153 (76%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +++EL + ERP+I++AI+EARA+GDL ENAEY AA+E Q+L EGR+AE Sbjct: 5 PLTVRGAQMLKEELARLKTRERPKIVRAIAEARAHGDLKENAEYHAAREQQSLLEGRIAE 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + A++ID+ ++S D ++ FG TV L E++SGD+ YQIVG+ EAD++ G VSI S Sbjct: 65 LEEKLANAQIIDVRSLSADGKVVFGVTVVLAEESSGDEMTYQIVGEDEADIKHGKVSIHS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALIGKE G+I+ V AP G ++YEI++V + Sbjct: 125 PIARALIGKEEGEIVEVRAPAGNRSYEIVEVRY 157 >gi|83951519|ref|ZP_00960251.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM] gi|83836525|gb|EAP75822.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM] Length = 164 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G + ++ EL+ + EERP II+AI+EAR +GDLSENAEY +A+E Q+ EG Sbjct: 9 MEKIPMTRRGHEALEVELKHLKSEERPAIIRAIAEAREHGDLSENAEYHSAREKQSFIEG 68 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEV D + +SG I FGATV+LV++++ ++K +QIVG+ EA ++ GL++ Sbjct: 69 RIKELEGVLSLAEVFDPAKLSGP-IKFGATVTLVDEDTDEEKTWQIVGEHEASIEKGLLN 127 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGK+ GD + V PGGE++YE+L++ +I Sbjct: 128 IKSPIARALIGKDEGDSVEVRTPGGERSYEVLKIEYI 164 >gi|255261573|ref|ZP_05340915.1| transcription elongation factor GreA [Thalassiobium sp. R2A62] gi|255103908|gb|EET46582.1| transcription elongation factor GreA [Thalassiobium sp. R2A62] Length = 156 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T G+D + EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTKAGYDALNAELKHLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID S MSG FGA V LV++++ ++K+YQIVG+ EAD+++G ++ Sbjct: 61 RVKELEGVISLADVIDTSKMSG-TAKFGAMVKLVDEDTDEEKSYQIVGEHEADIENGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK+ GD + V PGG K+YEIL++ + Sbjct: 120 MKSPLARALIGKDEGDSVEVRTPGGGKSYEILEINY 155 >gi|220934154|ref|YP_002513053.1| transcription elongation factor GreA [Thioalkalivibrio sp. HL-EbGR7] gi|254799576|sp|B8GNX7|GREA_THISH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219995464|gb|ACL72066.1| transcription elongation factor GreA [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +K++ EL+ + E+RPR+I AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KTPLTVAGANKLKAELQKLKSEDRPRVIAAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A++ID++T+ +G ++ FGATV L ++ +G + YQIVGD EAD++ G +S+ Sbjct: 63 KEIEAKLSNAQIIDVTTLNAGGKVVFGATVDLSDEETGKEVTYQIVGDDEADIKEGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GD+++V APGG+K YEI+ V +I Sbjct: 123 NSPIARALIGKEEGDVVTVKAPGGDKDYEIVAVKYI 158 >gi|157965027|ref|YP_001499851.1| transcription elongation factor GreA [Rickettsia massiliae MTU5] gi|157844803|gb|ABV85304.1| Transcription elongation factor GreA [Rickettsia massiliae MTU5] Length = 198 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 37 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 96 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ +K Y IVG+ EAD+ V Sbjct: 97 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEKVTYIIVGEYEADITRKRV 156 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 157 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 193 >gi|163745673|ref|ZP_02153033.1| transcription elongation factor GreA [Oceanibulbus indolifex HEL-45] gi|161382491|gb|EDQ06900.1| transcription elongation factor GreA [Oceanibulbus indolifex HEL-45] Length = 156 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRDGHTALEVELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID +SG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVISLADVIDPKKLSGS-IKFGATVTLVDEDTEEEKTYQIVGEYEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K+YE+L++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGQKSYEVLKIVY 155 >gi|74317147|ref|YP_314887.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] gi|74056642|gb|AAZ97082.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] Length = 158 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q EGR+ Sbjct: 3 KFPLTVVGAEKLRAELQHLKSVQRPAVIQAIAEARAQGDLSENAEYDAAKEKQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE ++ A++ID +T+ D RI FGATV L + SGD YQIVGD EAD++ G +S+ Sbjct: 63 AELEGKLSNAQIIDPTTLDADGRIVFGATVDLEDVESGDSVTYQIVGDDEADIKQGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIARALIGK GD + V APGG + YE+L VL+ Sbjct: 123 SSPIARALIGKYAGDAVDVQAPGGVRQYEVLDVLY 157 >gi|160900362|ref|YP_001565944.1| transcription elongation factor GreA [Delftia acidovorans SPH-1] gi|160365946|gb|ABX37559.1| transcription elongation factor GreA [Delftia acidovorans SPH-1] Length = 158 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 120/155 (77%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL + ERP II+AI+EARA GDLSENAEY+AAK+ Q EGR+A Sbjct: 4 IPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID S++ +G R+ FGATV L +++SGD YQIVG+ EAD++ GL+++S Sbjct: 64 EVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGGE+ YE++ V ++ Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL 158 >gi|85705718|ref|ZP_01036815.1| transcription elongation factor GreA [Roseovarius sp. 217] gi|85669708|gb|EAQ24572.1| transcription elongation factor GreA [Roseovarius sp. 217] Length = 156 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 121/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA ++ GL++ Sbjct: 61 RIKELEGILSLAEVIDPAKLSG-AIKFGATVTLVDEDTDEERTYQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGKE GD + V PGG++ YE+++V +I Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRAYEVIKVAYI 156 >gi|110680576|ref|YP_683583.1| transcription elongation factor GreA [Roseobacter denitrificans OCh 114] gi|109456692|gb|ABG32897.1| transcription elongation factor GreA [Roseobacter denitrificans OCh 114] Length = 312 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 157 MDKIPMTRKGHSDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 216 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++ Sbjct: 217 RIKELEGVLGLAEVIDPSKMSGA-IKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 275 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K YE+L++++ Sbjct: 276 IKSPIARALIGKDEGDSVEVRTPGGQKAYEVLKIVY 311 >gi|157826347|ref|YP_001494067.1| transcription elongation factor GreA [Rickettsia akari str. Hartford] gi|157800305|gb|ABV75559.1| transcription elongation factor GreA [Rickettsia akari str. Hartford] Length = 192 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + ISEAR +GDLSENAEY+AA+E Q E Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDISEAREHGDLSENAEYEAAREKQAFIE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPRGSKSYEVVTVEY 187 >gi|304321206|ref|YP_003854849.1| transcription elongation factor GreA [Parvularcula bermudensis HTCC2503] gi|303300108|gb|ADM09707.1| transcription elongation factor GreA [Parvularcula bermudensis HTCC2503] Length = 157 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF K++ +++ + ERP +I+AISEAR +GDLSENAEY AAKE Q+ EG Sbjct: 1 MEKFPMTKAGFAKLEADIKHLKTVERPAVIQAISEAREHGDLSENAEYHAAKERQSWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE+ +RA+VID++++SG + FGA+V+LV++ + ++K YQIVGD EAD+++G +S Sbjct: 61 QVLDLEDKHSRAQVIDVASLSGPDVKFGASVTLVDEETEEEKVYQIVGDLEADIKAGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGKE GD + V APGG YEI +V + Sbjct: 121 ISSPIARALIGKEEGDQVEVAAPGGSHIYEIEKVEY 156 >gi|126215706|sp|Q4UJS8|GREA_RICFE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 162 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157 >gi|114778233|ref|ZP_01453105.1| transcription elongation factor GreA [Mariprofundus ferrooxydans PV-1] gi|114551480|gb|EAU54035.1| transcription elongation factor GreA [Mariprofundus ferrooxydans PV-1] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 118/157 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T KG ++++Q L + + E+R +I+ I ARA+GDLSENAEY AAKE Q +NEG Sbjct: 1 MERVPMTKKGAEELKQLLAYLKGEKRHQIVSTIESARAHGDLSENAEYHAAKEEQGMNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++E+ + RA VID +T+ +++ FGATV L++ N G + YQIVG EAD++ G+VS Sbjct: 61 RITDIEDKLARAHVIDPATIKAEKVVFGATVELIDVNQGTEVTYQIVGVDEADIEKGMVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARA+IGKE GD+ V APGGE+ +EI + ++ Sbjct: 121 ITSPIARAMIGKEEGDLAVVQAPGGEREFEIQAIEYV 157 >gi|239948368|ref|ZP_04700121.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes scapularis] gi|239922644|gb|EER22668.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes scapularis] Length = 206 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 104 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201 >gi|77462321|ref|YP_351825.1| transcription elongation factor GreA [Rhodobacter sphaeroides 2.4.1] gi|126461197|ref|YP_001042311.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17029] gi|221638177|ref|YP_002524439.1| transcription elongation factor GreA [Rhodobacter sphaeroides KD131] gi|332560203|ref|ZP_08414525.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N] gi|123592895|sp|Q3J5L0|GREA_RHOS4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200690|sp|A3PGS3|GREA_RHOS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799566|sp|B9KLF5|GREA_RHOSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|77386739|gb|ABA77924.1| transcription elongation factor GreA [Rhodobacter sphaeroides 2.4.1] gi|126102861|gb|ABN75539.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17029] gi|221158958|gb|ACL99937.1| Transcription elongation factor greA [Rhodobacter sphaeroides KD131] gi|332277915|gb|EGJ23230.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N] Length = 156 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF + EL+ + ERP +I++I+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MDKIPMTRAGFTALDDELKTLKTVERPAVIRSIAEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+++++ + +++ YQIVG+ EAD+++GL++ Sbjct: 61 RIKELEAILSLAEVIDPAKLSGS-IKFGATVTILDEETEEERTYQIVGEAEADIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGGE+ YE++ V ++ Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156 >gi|254437943|ref|ZP_05051437.1| transcription elongation factor GreA subfamily [Octadecabacter antarcticus 307] gi|198253389|gb|EDY77703.1| transcription elongation factor GreA subfamily [Octadecabacter antarcticus 307] Length = 156 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFNKLDAELKHLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID+S +SG + FGA V+LV++ + + YQIVG+ EAD++ G ++ Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLVDEATDKETTYQIVGEYEADIEQGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGK+ GD + V PGG K+YEIL +++ Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155 >gi|67459752|ref|YP_247376.1| transcription elongation factor GreA [Rickettsia felis URRWXCal2] gi|67005285|gb|AAY62211.1| Transcription elongation factor GreA [Rickettsia felis URRWXCal2] Length = 192 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 187 >gi|313673623|ref|YP_004051734.1| transcription elongation factor grea [Calditerrivibrio nitroreducens DSM 19672] gi|312940379|gb|ADR19571.1| transcription elongation factor GreA [Calditerrivibrio nitroreducens DSM 19672] Length = 157 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/154 (53%), Positives = 113/154 (73%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +GF+K+++EL + ER +I+AI EARA+GDLSENAEY AAKE Q L E Sbjct: 1 MDRIPITPEGFEKLKKELERLKTVERKEVIEAIKEARAHGDLSENAEYDAAKERQGLIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AELE+ I R EVID S SGD++ FG V + +G+KK Y+IVG EAD+ G +S Sbjct: 61 KIAELESKIGRFEVIDPSNFSGDKVVFGVYVEIENVETGEKKRYRIVGPDEADISKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SPIA+AL+GK +GD + V APGG+K YEIL + Sbjct: 121 VISPIAKALMGKSVGDTVLVRAPGGDKEYEILDI 154 >gi|34581077|ref|ZP_00142557.1| transcription elongation factor EF [Rickettsia sibirica 246] gi|25453000|sp|Q92FZ5|GREA_RICCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28262462|gb|EAA25966.1| transcription elongation factor EF [Rickettsia sibirica 246] Length = 162 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157 >gi|15893255|ref|NP_360969.1| transcription elongation factor GreA [Rickettsia conorii str. Malish 7] gi|157829162|ref|YP_001495404.1| transcription elongation factor GreA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933891|ref|YP_001650680.1| transcription elongation factor GreA [Rickettsia rickettsii str. Iowa] gi|238651107|ref|YP_002916965.1| transcription elongation factor GreA [Rickettsia peacockii str. Rustic] gi|15620474|gb|AAL03870.1| transcription elongation factor EF [Rickettsia conorii str. Malish 7] gi|157801643|gb|ABV76896.1| transcription elongation factor GreA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908978|gb|ABY73274.1| transcription elongation factor [Rickettsia rickettsii str. Iowa] gi|238625205|gb|ACR47911.1| transcription elongation factor GreA [Rickettsia peacockii str. Rustic] Length = 206 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 104 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201 >gi|15604691|ref|NP_221209.1| transcription elongation factor GreA [Rickettsia prowazekii str. Madrid E] gi|121608|sp|P27640|GREA_RICPR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|46346|emb|CAA78107.1| GreA [Rickettsia prowazekii] gi|434678|gb|AAB81401.1| GreA [Rickettsia prowazekii] gi|3861386|emb|CAA15285.1| TRANSCRIPTION ELONGATION FACTOR GREA (greA) [Rickettsia prowazekii] gi|292572525|gb|ADE30440.1| Transcription elongation factor GreA [Rickettsia prowazekii Rp22] Length = 162 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY 157 >gi|163857848|ref|YP_001632146.1| hypothetical protein Bpet3535 [Bordetella petrii DSM 12804] gi|163261576|emb|CAP43878.1| greA [Bordetella petrii] Length = 158 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A Sbjct: 4 IPLTARGAERLQAELHRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID + + D R FGATV + + +SGD+ +YQIVGD EAD++S L+S+S Sbjct: 64 ELEGTLSNAHIIDPAALDADGRAVFGATVDIEDLDSGDRLSYQIVGDVEADIKSNLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 124 SPVARALIGKSEGDVVEVKAPSGVREYEVLGVRYI 158 >gi|21242607|ref|NP_642189.1| transcription elongation factor GreA [Xanthomonas axonopodis pv. citri str. 306] gi|78047466|ref|YP_363641.1| transcription elongation factor GreA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624591|ref|ZP_06703266.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666706|ref|ZP_06731942.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|25452987|sp|Q8PLD9|GREA_XANAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21108069|gb|AAM36725.1| transcriptional elongation factor [Xanthomonas axonopodis pv. citri str. 306] gi|78035896|emb|CAJ23587.1| transcriptional elongation factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601126|gb|EFF45188.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603531|gb|EFF46946.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 158 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++I Sbjct: 62 KQLESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|229587229|ref|YP_002845730.1| transcription elongation factor GreA [Rickettsia africae ESF-5] gi|228022279|gb|ACP53987.1| Transcription elongation factor GreA [Rickettsia africae ESF-5] Length = 185 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 24 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 83 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 84 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 143 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ + + Sbjct: 144 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTIEY 180 >gi|146278508|ref|YP_001168667.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17025] gi|166200695|sp|A4WVE8|GREA_RHOS5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145556749|gb|ABP71362.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17025] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGFAALDDELKLLKTVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEVID + +SG I FGATV+++++ + ++K YQIVG+ EAD+++GL++ Sbjct: 61 RIKELEALLSLAEVIDPARLSGS-IKFGATVTILDEETEEEKTYQIVGEAEADIENGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGGE+ YE++ V ++ Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156 >gi|89052989|ref|YP_508440.1| transcription elongation factor GreA [Jannaschia sp. CCS1] gi|122999643|sp|Q28V47|GREA_JANSC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|88862538|gb|ABD53415.1| GreA/GreB family elongation factor [Jannaschia sp. CCS1] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T KG + + EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTPKGLEAMNGELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID +T+SG I FGATV LV++ + ++K Y IVG+ EAD++ GL++ Sbjct: 61 RIKELEGSISLAQVIDPATLSG-AIKFGATVDLVDEETEEEKTYMIVGEAEADIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGKE GD + V PGG K +EI+++ ++ Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGAKGFEIVKISYV 156 >gi|91204868|ref|YP_537223.1| transcription elongation factor GreA [Rickettsia bellii RML369-C] gi|123266252|sp|Q1RKI0|GREA_RICBR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|91068412|gb|ABE04134.1| Transcription elongation factor GreA [Rickettsia bellii RML369-C] Length = 162 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/157 (49%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+ K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E Sbjct: 1 MMAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ V Sbjct: 61 ARIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GDI+ V PGG K+YE++ + + Sbjct: 121 SIASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 157 >gi|291279481|ref|YP_003496316.1| transcription elongation factor GreA [Deferribacter desulfuricans SSM1] gi|290754183|dbj|BAI80560.1| transcription elongation factor GreA [Deferribacter desulfuricans SSM1] Length = 157 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 116/156 (74%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +G++K++ EL ++ ER +IKAI EAR +GDLSENAEY AAKE Q + E Sbjct: 1 MDRIPITKEGYEKVKAELERLKKVERREVIKAIEEARGHGDLSENAEYDAAKERQGMIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + R EVID S + GD++ FGATV + ++G+ K Y+IVG E+D+ G +S Sbjct: 61 RIAELESKMARFEVIDTSKLKGDKVVFGATVKIENLDTGEIKTYKIVGPDESDISKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARAL+GK++GD ++V AP GE YEIL++ + Sbjct: 121 IISPIARALVGKKVGDDVTVIAPNGEVEYEILEISF 156 >gi|124266456|ref|YP_001020460.1| transcription elongation factor GreA [Methylibium petroleiphilum PM1] gi|124259231|gb|ABM94225.1| transcription elongation factor GreA [Methylibium petroleiphilum PM1] Length = 168 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + ER +I+AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 14 IPLTKRGAEKLKEELHRLKSVERHAVIQAIAEARAQGDLSENAEYEAAKDKQGFIEGRIL 73 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A++ID + + +G R+ FGATV L E++SGD YQIVGD EAD++ GL+S+S Sbjct: 74 EIESKMAAAQIIDPAMLDAGGRVVFGATVELEEESSGDSVTYQIVGDDEADLKQGLISVS 133 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARA+IGKE GD+ APGG + YEI++V ++ Sbjct: 134 SPIARAMIGKEAGDVAEFQAPGGTRRYEIVEVRYL 168 >gi|114771295|ref|ZP_01448715.1| transcription elongation factor GreA [alpha proteobacterium HTCC2255] gi|114548220|gb|EAU51107.1| transcription elongation factor GreA [alpha proteobacterium HTCC2255] Length = 156 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF EL+ + +RP +IKAI+EAR +GDLSENAEY +A+ELQ+ EG Sbjct: 1 MDKIPMTPAGFKSADNELKQLKSVDRPSVIKAIAEAREHGDLSENAEYHSARELQSHIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II+ A++ID+S +SG+ + FGATV LV++++ ++ QIVG+ EA++++ ++ Sbjct: 61 RIKELEAIISLAQIIDVSKLSGN-VKFGATVHLVDEDTDAERTLQIVGEHEANIENNQIN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARALIGKE GD + V PGG K+YEIL V +I Sbjct: 120 MNSPIARALIGKEEGDSVEVRTPGGVKSYEILSVKFI 156 >gi|254487531|ref|ZP_05100736.1| transcription elongation factor GreA [Roseobacter sp. GAI101] gi|214044400|gb|EEB85038.1| transcription elongation factor GreA [Roseobacter sp. GAI101] Length = 160 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 5 LEKIPMTRAGHSALETELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 64 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID + MSG I FGA V+LV++++ ++K YQIVG+ EA+++ GL++ Sbjct: 65 RVKELEGAISLADVIDPAKMSG-AIKFGAKVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG K+YE+L++++ Sbjct: 124 IKSPIARALIGKDEGDSVEVRTPGGVKSYEVLKIIY 159 >gi|51474029|ref|YP_067786.1| transcription elongation factor GreA [Rickettsia typhi str. Wilmington] gi|81389908|sp|Q68VQ2|GREA_RICTY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|51460341|gb|AAU04304.1| transcription elongation factor GreA [Rickettsia typhi str. Wilmington] Length = 162 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYVIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVITPKGLKSYEVVTVEY 157 >gi|312795594|ref|YP_004028516.1| transcription elongation factor greA [Burkholderia rhizoxinica HKI 454] gi|312167369|emb|CBW74372.1| Transcription elongation factor greA [Burkholderia rhizoxinica HKI 454] Length = 179 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q E Sbjct: 21 FMSTIPLTKRGADQLRDELQRLKSVERPSVIHAIAEARAQGDLSENAEYDAAKEKQAFIE 80 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELE+ ++ A++ID + D R+ FGATV L + +SGDK YQIVGD EAD++ GL Sbjct: 81 GRIAELESKLSAAQIIDPKAVDADGRVVFGATVDLEDLDSGDKVTYQIVGDDEADLEHGL 140 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S+SSPIARALIGK GD+ +V AP G + YEI+ V + Sbjct: 141 ISVSSPIARALIGKFEGDVAAVQAPSGVREYEIIAVRY 178 >gi|84500249|ref|ZP_00998515.1| transcription elongation factor GreA [Oceanicola batsensis HTCC2597] gi|84392183|gb|EAQ04451.1| transcription elongation factor GreA [Oceanicola batsensis HTCC2597] Length = 156 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTRAGFTALEAELKHLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID T+SG + FGA V++V++++ ++K +QIVG+ EAD++ GL++ Sbjct: 61 RIKELEGVISLADVIDPKTLSG-AVKFGAKVTVVDEDTDEEKTWQIVGEYEADIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG+++YEIL++ + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILKIEY 155 >gi|254450273|ref|ZP_05063710.1| transcription elongation factor GreA [Octadecabacter antarcticus 238] gi|198264679|gb|EDY88949.1| transcription elongation factor GreA [Octadecabacter antarcticus 238] Length = 156 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFNKLDAELKNLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID+S +SG + FGA V+L+++ + + YQIVG+ EAD++ G ++ Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLIDEATDKETTYQIVGEYEADIEQGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGK+ GD + V PGG K+YEIL +++ Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155 >gi|167587476|ref|ZP_02379864.1| transcription elongation factor GreA [Burkholderia ubonensis Bu] Length = 158 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID S++ D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPSSLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADLDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|260220957|emb|CBA29042.1| Transcription elongation factor greA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 163 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 84/154 (54%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G + ++ EL + ERP +I+AI+EARA GDLSENA+Y AAKE Q EGR+ E Sbjct: 10 PITKRGAEMLKAELHKLKTVERPSVIQAIAEARAQGDLSENADYDAAKERQGFIEGRIQE 69 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A+VID ST+ D R+ FGATV L +++SG + YQIVG+ EAD++ GL++ISS Sbjct: 70 VEGKLSAAQVIDPSTIQADGRVVFGATVELEDEDSGQQVKYQIVGEDEADLKQGLINISS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARALIGKE+GD V APGGE+ YE++ V +I Sbjct: 130 PIARALIGKEVGDTAVVQAPGGERAYEVVAVHYI 163 >gi|288940454|ref|YP_003442694.1| transcription elongation factor GreA [Allochromatium vinosum DSM 180] gi|288895826|gb|ADC61662.1| transcription elongation factor GreA [Allochromatium vinosum DSM 180] Length = 158 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+++EL ++ ERPRII+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTARGAEKLREELEQLKRVERPRIIEAIAEARAHGDLKENAEYHAAREQQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++TM + ++ FGATV ++E + ++ YQIVG+ EAD++ GL+ Sbjct: 61 RIKDIEGKLSHAQIIDVTTMPHNGKVIFGATVKVLELETDEEHCYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+AR LIGK GD+ S+ APGG + +EIL+V ++ Sbjct: 121 SVGSPLARCLIGKAEGDVASLQAPGGLREFEILEVQYV 158 >gi|317405977|gb|EFV86255.1| GreA protein [Achromobacter xylosoxidans C54] Length = 158 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A Sbjct: 4 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID +++ + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S Sbjct: 64 ELEGTLSNAHLIDPTSLEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGVREYEVLSVRYI 158 >gi|83719378|ref|YP_443292.1| transcription elongation factor GreA [Burkholderia thailandensis E264] gi|167582309|ref|ZP_02375183.1| transcription elongation factor GreA [Burkholderia thailandensis TXDOH] gi|167620406|ref|ZP_02389037.1| transcription elongation factor GreA [Burkholderia thailandensis Bt4] gi|257139528|ref|ZP_05587790.1| transcription elongation factor GreA [Burkholderia thailandensis E264] gi|83653203|gb|ABC37266.1| transcription elongation factor GreA [Burkholderia thailandensis E264] Length = 158 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|167836215|ref|ZP_02463098.1| transcription elongation factor GreA [Burkholderia thailandensis MSMB43] Length = 158 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPTVVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|56695227|ref|YP_165575.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3] gi|81350946|sp|Q5LXA4|GREA_SILPO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56676964|gb|AAV93630.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3] Length = 156 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPSGFAALEAELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGARVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K+YEIL + + Sbjct: 120 IKSPIARALIGKDEGDSVEVKTPGGQKSYEILSIEY 155 >gi|186475640|ref|YP_001857110.1| transcription elongation factor GreA [Burkholderia phymatum STM815] gi|184192099|gb|ACC70064.1| transcription elongation factor GreA [Burkholderia phymatum STM815] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A++ID S + D R+ F ATV L + +SGD YQIVGD EAD++ GL+S+S Sbjct: 64 EIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158 >gi|307730495|ref|YP_003907719.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307585030|gb|ADN58428.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID S + D R+ FGATV L + +SG YQIVGD EAD+ GL+SIS Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|121594730|ref|YP_986626.1| transcription elongation factor GreA [Acidovorax sp. JS42] gi|222110667|ref|YP_002552931.1| transcription elongation factor grea [Acidovorax ebreus TPSY] gi|120606810|gb|ABM42550.1| transcription elongation factor GreA [Acidovorax sp. JS42] gi|221730111|gb|ACM32931.1| transcription elongation factor GreA [Acidovorax ebreus TPSY] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVISAIAEARAQGDLSENAEYEAAKDRQGFIEGRIM 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID S + +G R+ FGATV L ++++GD YQIVG+ EAD++ GL+++S Sbjct: 64 EIEGKLSAAQIIDPSALDAGGRVVFGATVELEDEDTGDAVKYQIVGEDEADLKHGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGG + YE++ V +I Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVAVSYI 158 >gi|259415108|ref|ZP_05739030.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B] gi|259349018|gb|EEW60772.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B] Length = 156 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG++ YEIL++++ Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155 >gi|91784541|ref|YP_559747.1| transcription elongation factor GreA [Burkholderia xenovorans LB400] gi|91688495|gb|ABE31695.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 176 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 + +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q E Sbjct: 18 FMSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIE 77 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL Sbjct: 78 GRIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGL 137 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 138 ISISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 176 >gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040] gi|99035857|gb|ABF62715.1| transcription elongation factor GreA [Ruegeria sp. TM1040] Length = 156 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID S +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVLSLADVIDPSKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG+++YEIL + + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILDITY 155 >gi|58582509|ref|YP_201525.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427103|gb|AAW76140.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae KACC10331] Length = 170 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 14 RAPMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 73 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++I Sbjct: 74 KQLEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 133 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 134 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 169 >gi|126728314|ref|ZP_01744130.1| transcription elongation factor GreA [Sagittula stellata E-37] gi|126711279|gb|EBA10329.1| transcription elongation factor GreA [Sagittula stellata E-37] Length = 156 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKI +T GF ++ EL+ + ERP II+AISEAR GDL ENAEY +A+E Q EG Sbjct: 1 MDKILITRAGFTALEAELKQLKSVERPAIIQAISEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I AEVID +++SG + FGATV++V++++ ++K +QIVG+ EA ++ GL++ Sbjct: 61 RIKELESVIGLAEVIDPASLSGS-VKFGATVTVVDEDTDEEKTWQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGGEK+YEIL V + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGEKSYEILSVSY 155 >gi|84624395|ref|YP_451767.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711939|ref|ZP_02243146.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzicola BLS256] gi|84368335|dbj|BAE69493.1| transcription elongation factor greA [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 158 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++I Sbjct: 62 KQLEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|253997071|ref|YP_003049135.1| transcription elongation factor GreA [Methylotenera mobilis JLW8] gi|253983750|gb|ACT48608.1| transcription elongation factor GreA [Methylotenera mobilis JLW8] Length = 160 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 121/158 (76%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + PVT +G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q+ EG Sbjct: 3 LSQFPVTVRGAELLKEELQRLRGVDRPNIIQAIAEARAQGDLSENAEYESAKERQSFIEG 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ ++ID T++ + R+ FGATV++ + +SGD K YQIVG+ EAD+++G + Sbjct: 63 RIAELEAKLSNLQIIDPQTLNAEGRVVFGATVNIEDLDSGDNKTYQIVGEDEADIKNGKI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GDI V+APGG + YE+L VL+I Sbjct: 123 SVSSPIARGLIGKSAGDIAEVSAPGGVREYEVLDVLYI 160 >gi|157826502|ref|YP_001495566.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389] gi|229485905|sp|A8GUN3|GREA_RICB8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157801806|gb|ABV78529.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389] Length = 161 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 76/154 (49%), Positives = 113/154 (73%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E R+ Sbjct: 3 KFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVEARI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ VSI+ Sbjct: 63 KHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRVSIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALIGK +GDI+ V PGG K+YE++ + + Sbjct: 123 SPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 156 >gi|323526828|ref|YP_004228981.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001] gi|323383830|gb|ADX55921.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001] Length = 158 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID S + D R+ FGATV L + SG YQIVGD EAD+ GL+SIS Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATVELEDLESGASVKYQIVGDDEADIDHGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|296158199|ref|ZP_06841031.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295891535|gb|EFG71321.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 158 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 VPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+SIS Sbjct: 64 EIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|107022368|ref|YP_620695.1| transcription elongation factor GreA [Burkholderia cenocepacia AU 1054] gi|116689315|ref|YP_834938.1| transcription elongation factor GreA [Burkholderia cenocepacia HI2424] gi|170732614|ref|YP_001764561.1| transcription elongation factor GreA [Burkholderia cenocepacia MC0-3] gi|206559640|ref|YP_002230401.1| transcription elongation factor GreA [Burkholderia cenocepacia J2315] gi|254245763|ref|ZP_04939084.1| Prokaryotic transcription elongation factor GreA [Burkholderia cenocepacia PC184] gi|254252705|ref|ZP_04946023.1| Prokaryotic transcription elongation factor GreA [Burkholderia dolosa AUO158] gi|105892557|gb|ABF75722.1| transcription elongation factor GreA [Burkholderia cenocepacia AU 1054] gi|116647404|gb|ABK08045.1| transcription elongation factor GreA [Burkholderia cenocepacia HI2424] gi|124870539|gb|EAY62255.1| Prokaryotic transcription elongation factor GreA [Burkholderia cenocepacia PC184] gi|124895314|gb|EAY69194.1| Prokaryotic transcription elongation factor GreA [Burkholderia dolosa AUO158] gi|169815856|gb|ACA90439.1| transcription elongation factor GreA [Burkholderia cenocepacia MC0-3] gi|198035678|emb|CAR51565.1| transcription elongation factor [Burkholderia cenocepacia J2315] gi|325525887|gb|EGD03598.1| transcription elongation factor GreA [Burkholderia sp. TJI49] Length = 158 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQIIDPTVLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|167562359|ref|ZP_02355275.1| transcription elongation factor GreA [Burkholderia oklahomensis EO147] gi|167574344|ref|ZP_02367218.1| transcription elongation factor GreA [Burkholderia oklahomensis C6786] Length = 158 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID + + D R+ F ATV L + +G+ YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGNTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|84683984|ref|ZP_01011886.1| Transcription elongation factor greA [Maritimibacter alkaliphilus HTCC2654] gi|84667737|gb|EAQ14205.1| Transcription elongation factor greA [Rhodobacterales bacterium HTCC2654] Length = 156 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T G+ + EL+ + ERP +I AISEAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKILLTRAGYTALNDELKKLKSVERPAVIAAISEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+II AEVID + +SG I F ATV LV++++ ++K YQIVG+ EAD++ G ++ Sbjct: 61 RVKELESIIGLAEVIDPAKLSG-AIKFSATVKLVDEDTDEEKTYQIVGEPEADLEKGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGKE GD + V PGGEK+YEIL++ +I Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGEKSYEILEIEYI 156 >gi|161525197|ref|YP_001580209.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|189350064|ref|YP_001945692.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|221201965|ref|ZP_03575001.1| transcription elongation factor GreA [Burkholderia multivorans CGD2M] gi|221204905|ref|ZP_03577922.1| transcription elongation factor GreA [Burkholderia multivorans CGD2] gi|221213882|ref|ZP_03586855.1| transcription elongation factor GreA [Burkholderia multivorans CGD1] gi|160342626|gb|ABX15712.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|189334086|dbj|BAG43156.1| transcription elongation factor [Burkholderia multivorans ATCC 17616] gi|221166059|gb|EED98532.1| transcription elongation factor GreA [Burkholderia multivorans CGD1] gi|221175762|gb|EEE08192.1| transcription elongation factor GreA [Burkholderia multivorans CGD2] gi|221178048|gb|EEE10459.1| transcription elongation factor GreA [Burkholderia multivorans CGD2M] Length = 158 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQIIDPTVLEADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|21231292|ref|NP_637209.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768656|ref|YP_243418.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. 8004] gi|188991526|ref|YP_001903536.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. B100] gi|25453015|sp|Q9L4D3|GREA_XANCP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7228158|emb|CAB77041.1| putative transcriptional elongation factor [Xanthomonas campestris] gi|21112945|gb|AAM41133.1| putative transcriptional elongation factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573988|gb|AAY49398.1| putative transcriptional elongation factor [Xanthomonas campestris pv. campestris str. 8004] gi|167733286|emb|CAP51485.1| transcriptional elongation factor [Xanthomonas campestris pv. campestris] Length = 158 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AE+IDI+ ++ G +I FGATV+L + + ++K YQIVGD EAD++ GL++I Sbjct: 62 KQLEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|293607001|ref|ZP_06689345.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC 43553] gi|292814598|gb|EFF73735.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC 43553] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A Sbjct: 4 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID +++ + R FGATV + + +SGD+ YQIVGD EAD+++ L+S+S Sbjct: 64 ELEGTLSNAHLIDPTSLDAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKANLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGVREYEVLGVRYI 158 >gi|153874961|ref|ZP_02002967.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS] gi|152068576|gb|EDN67034.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS] Length = 157 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T++G K++ EL + ERP++I+AI+EARA GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 KSPMTTQGAQKLRDELHHLKTVERPKVIQAIAEARALGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE AE+IDI+ ++ + ++ FGATV+L+ + ++ YQIVGD EAD+++ L+SI Sbjct: 62 MELETKFASAEIIDITKINANGKVVFGATVNLMNVETEEEVTYQIVGDDEADIKAHLISI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALI KE G+I V APGG+K YEIL+V +I Sbjct: 122 SSPIARALIKKEEGEIAVVQAPGGKKEYEILEVKYI 157 >gi|296136187|ref|YP_003643429.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] gi|295796309|gb|ADG31099.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+ Sbjct: 5 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S Sbjct: 65 IEGKLGTAQIIDPSELRADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALIGKE GD+ V APGG + YEIL V + Sbjct: 125 PIARALIGKESGDVAQVAAPGGVRQYEILAVHY 157 >gi|295677142|ref|YP_003605666.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295436985|gb|ADG16155.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 160 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/159 (54%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 + IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q E Sbjct: 2 FMSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIE 61 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL Sbjct: 62 GRIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGL 121 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARALIGK GD+ SV APGG + YEI+ V +I Sbjct: 122 ISISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYI 160 >gi|325925177|ref|ZP_08186590.1| transcription elongation factor GreA [Xanthomonas perforans 91-118] gi|325544431|gb|EGD15801.1| transcription elongation factor GreA [Xanthomonas perforans 91-118] Length = 154 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP Sbjct: 61 ESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|319944199|ref|ZP_08018475.1| transcription elongation factor GreA [Lautropia mirabilis ATCC 51599] gi|319742494|gb|EFV94905.1| transcription elongation factor GreA [Lautropia mirabilis ATCC 51599] Length = 159 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T G ++ EL+ + ERP +I AI+EARA GDLSENAEY++AKE Q+ E Sbjct: 1 MATSFPLTKHGAQLLKDELQRLKSVERPNVINAIAEARAQGDLSENAEYESAKERQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELE ++ A++ID + + D R+ FGATV L + +SGDK YQIVG+ EAD++ Sbjct: 61 GRIAELEGKLSAAQIIDPAALDADGRVVFGATVQLEDIDSGDKVTYQIVGEDEADLKLSK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S++SP+ARALIGK GD+ S APGGE+ YEIL VL+ Sbjct: 121 ISVASPLARALIGKYAGDVASFQAPGGEREYEILDVLY 158 >gi|238026780|ref|YP_002911011.1| transcription elongation factor GreA [Burkholderia glumae BGR1] gi|237875974|gb|ACR28307.1| Transcription elongation factor GreA [Burkholderia glumae BGR1] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++++EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLREELQRLKSIERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A++ID S + + R+ F ATV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQIIDPSVLDAEGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|260576249|ref|ZP_05844241.1| transcription elongation factor GreA [Rhodobacter sp. SW2] gi|259021517|gb|EEW24821.1| transcription elongation factor GreA [Rhodobacter sp. SW2] Length = 151 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/152 (51%), Positives = 116/152 (76%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF + EL+ + ERP +I+AI+EARA+GDLSENAEY AA+E Q+ EGR+ EL Sbjct: 1 MTRGGFVALDDELKLLKSVERPAVIRAIAEARAHGDLSENAEYHAAREKQSFIEGRIKEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E II+RAEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA+++ G ++I SP+ Sbjct: 61 EAIISRAEVIDPAKLSG-AIKFGATVTLVDEDTNEERTYQIVGEPEANIEGGFLNIRSPL 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK GD + V PGG+++YE+L + ++ Sbjct: 120 ARALIGKAEGDSVDVKTPGGQRSYEVLSIRFV 151 >gi|300691215|ref|YP_003752210.1| transcription elongation factor [Ralstonia solanacearum PSI07] gi|299078275|emb|CBJ50923.1| transcription elongation factor [Ralstonia solanacearum PSI07] Length = 158 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+++G +SIS Sbjct: 64 EIESKLSAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 124 SPIARALIGKLEGDVATVIAPGGEREYEVLAVKYL 158 >gi|149927094|ref|ZP_01915352.1| transcription elongation factor GreA [Limnobacter sp. MED105] gi|149824315|gb|EDM83535.1| transcription elongation factor GreA [Limnobacter sp. MED105] Length = 158 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T KG +K++QEL + +RP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPLTVKGAEKLKQELHRLKTIDRPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID + + + R+ FGATV L + +G YQIVGD EAD+++GL+SIS Sbjct: 64 EIEGKMSNAQIIDPTNVDAEGRVVFGATVKLEDIEAGATVEYQIVGDDEADIKAGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ V APGG + YE+L+V +I Sbjct: 124 SPIARALIGKYEGDVAHVQAPGGLREYEVLEVKYI 158 >gi|209517189|ref|ZP_03266034.1| transcription elongation factor GreA [Burkholderia sp. H160] gi|209502325|gb|EEA02336.1| transcription elongation factor GreA [Burkholderia sp. H160] Length = 158 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+SIS Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVASVQAPGGIREYEIIAVSYV 158 >gi|319763187|ref|YP_004127124.1| transcription elongation factor grea [Alicycliphilus denitrificans BC] gi|330825250|ref|YP_004388553.1| transcription elongation factor GreA [Alicycliphilus denitrificans K601] gi|317117748|gb|ADV00237.1| transcription elongation factor GreA [Alicycliphilus denitrificans BC] gi|329310622|gb|AEB85037.1| transcription elongation factor GreA [Alicycliphilus denitrificans K601] Length = 158 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++QEL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 4 IPITKRGAEQLKQELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID S + +G R+ FGATV L +++SG+ YQIVG+ EAD++ GL+++S Sbjct: 64 EIEGKLSAAQIIDPSELDAGGRVVFGATVELEDEDSGEAVRYQIVGEDEADLKHGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGG + YE++ V ++ Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVSVSYV 158 >gi|134295356|ref|YP_001119091.1| transcription elongation factor GreA [Burkholderia vietnamiensis G4] gi|134138513|gb|ABO54256.1| transcription elongation factor GreA [Burkholderia vietnamiensis G4] Length = 158 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGG + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPGGVREYEIISVSYI 158 >gi|25453016|sp|Q9PEC0|GREA_XYLFA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 158 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AEVID++ + +G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+I Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|86139026|ref|ZP_01057597.1| transcription elongation factor GreA [Roseobacter sp. MED193] gi|85824257|gb|EAQ44461.1| transcription elongation factor GreA [Roseobacter sp. MED193] Length = 156 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+TS G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTSAGHTALEAELKNLKSVERPTIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+V++GL++ Sbjct: 61 RIKELEGILSLADVIDPAKLSGS-IKFGAKVTLVDEDTDEEKTWQIVGEHEANVEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG + YEIL + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRGYEILTIHY 155 >gi|311108151|ref|YP_003981004.1| transcription elongation factor GreA [Achromobacter xylosoxidans A8] gi|310762840|gb|ADP18289.1| transcription elongation factor GreA [Achromobacter xylosoxidans A8] Length = 232 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A Sbjct: 78 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 137 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID + + + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S Sbjct: 138 ELEGTLSNAHLIDPTALEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLISVS 197 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 198 SPVARALIGKSEGDVVEVVAPAGVREYEVLGVRYI 232 >gi|187924842|ref|YP_001896484.1| transcription elongation factor GreA [Burkholderia phytofirmans PsJN] gi|187716036|gb|ACD17260.1| transcription elongation factor GreA [Burkholderia phytofirmans PsJN] Length = 158 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 VPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID + + D R+ FGATV L + +SG YQIVGD EAD+ GL+SIS Sbjct: 64 EIESKLAGAQVIDPAAVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|241663320|ref|YP_002981680.1| transcription elongation factor GreA [Ralstonia pickettii 12D] gi|309782465|ref|ZP_07677189.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA] gi|240865347|gb|ACS63008.1| transcription elongation factor GreA [Ralstonia pickettii 12D] gi|308918802|gb|EFP64475.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA] Length = 158 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID +++ D R+ FGAT+ L + +SG YQIVGD EAD+++G +SIS Sbjct: 64 EIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 124 SPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158 >gi|121998553|ref|YP_001003340.1| transcription elongation factor GreA [Halorhodospira halophila SL1] gi|166200666|sp|A1WXX6|GREA_HALHL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|121589958|gb|ABM62538.1| transcription elongation factor GreA [Halorhodospira halophila SL1] Length = 158 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G +K+++EL + E+RPR+I+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKIPLTIRGAEKLREELHRLKHEDRPRVIQAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + + +I FGATV+L + ++ + YQIVG+ EAD++ L+ Sbjct: 61 RIQEIEGKLSNAQIIDPAAVQAAPKIVFGATVALEDTDTEETVTYQIVGEDEADIKQHLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GD V APGGE+TYEI++V + Sbjct: 121 SVNSPIARALIGKEEGDEAVVQAPGGERTYEIVEVRY 157 >gi|226941818|ref|YP_002796892.1| GreA [Laribacter hongkongensis HLHK9] gi|226716745|gb|ACO75883.1| GreA [Laribacter hongkongensis HLHK9] Length = 158 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 84/156 (53%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY AAKE Q EGR+ Sbjct: 3 KVPLTRFGAEQLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYDAAKERQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE ++ A+VID + + D RI FGATV L++ + D+ YQIVGD EAD++ G VS+ Sbjct: 63 AELEGKLSNAQVIDPADLDADGRIVFGATVELLDLETEDEVGYQIVGDDEADIKLGKVSV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GD + V APGG + YE+L V +I Sbjct: 123 NSPIARALIGKEAGDTVEVMAPGGIREYEVLDVKYI 158 >gi|221066104|ref|ZP_03542209.1| transcription elongation factor GreA [Comamonas testosteroni KF-1] gi|220711127|gb|EED66495.1| transcription elongation factor GreA [Comamonas testosteroni KF-1] Length = 158 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EGR+ Sbjct: 4 IPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEGRII 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + +G R+ FGATV L +++SG YQIVG+ EAD++ GL+++S Sbjct: 64 EVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSAVTYQIVGEDEADLKHGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGGE+ YEI+ V +I Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYI 158 >gi|260429205|ref|ZP_05783182.1| transcription elongation factor GreA [Citreicella sp. SE45] gi|260419828|gb|EEX13081.1| transcription elongation factor GreA [Citreicella sp. SE45] Length = 156 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T GF ++ EL+ + EERP +I+AI+EAR GDL ENAEY +A+E Q EG Sbjct: 1 MEKILITRAGFTALETELKKLKSEERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+I+ AEVID T+SG + FGATV +V++++ ++K +QIVG+ EA ++ GL++ Sbjct: 61 RIKEIESIMGLAEVIDPRTLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEASIERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SPIARALIGKE GD + V PGGEK+YEIL + Sbjct: 120 IKSPIARALIGKEAGDSVEVRTPGGEKSYEILSI 153 >gi|294340422|emb|CAZ88803.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Thiomonas sp. 3As] Length = 157 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+ Sbjct: 4 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S Sbjct: 64 IEGKLGTAQIIDPSELQADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALIGKE G++ V APGG + YEIL V + Sbjct: 124 PIARALIGKESGEVAQVAAPGGVRHYEILAVHY 156 >gi|258545601|ref|ZP_05705835.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC 15826] gi|258519153|gb|EEV88012.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC 15826] Length = 160 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV KIP+T KG ++ EL + EERPR+I+AI+EARA+GDL ENAEY AA+E Q E Sbjct: 1 MVAKIPMTKKGEQALRAELEKLKSEERPRVIEAIAEARAHGDLKENAEYHAAREQQGFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ ELE+ ++ A VID++T+ + ++ FG TV L + +SG++ Y+IVG+ EAD+++GL Sbjct: 61 GRIRELEHKLSHANVIDVTTLPQNGKVVFGTTVELEDSDSGEEMTYKIVGEDEADIKAGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SPIARAL+GKE G+ + V P G K EIL V + Sbjct: 121 ISNTSPIARALLGKEEGETVEVVIPDGRKMLEILAVRY 158 >gi|115351223|ref|YP_773062.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD] gi|170697948|ref|ZP_02889031.1| transcription elongation factor GreA [Burkholderia ambifaria IOP40-10] gi|115281211|gb|ABI86728.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD] gi|170137114|gb|EDT05359.1| transcription elongation factor GreA [Burkholderia ambifaria IOP40-10] Length = 158 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVITAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|264679349|ref|YP_003279256.1| Kelongation factor GreA [Comamonas testosteroni CNB-2] gi|299532308|ref|ZP_07045701.1| Kelongation factor GreA [Comamonas testosteroni S44] gi|262209862|gb|ACY33960.1| Kelongation factor GreA [Comamonas testosteroni CNB-2] gi|298719716|gb|EFI60680.1| Kelongation factor GreA [Comamonas testosteroni S44] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EGR+ Sbjct: 4 IPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + +G R+ FGATV L +++SG YQIVG+ EAD++ GL+++S Sbjct: 64 EVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSPVTYQIVGEDEADLKHGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGGE+ YEI+ V ++ Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYV 158 >gi|254197614|ref|ZP_04904036.1| transcription elongation factor GreA [Burkholderia pseudomallei S13] gi|169654355|gb|EDS87048.1| transcription elongation factor GreA [Burkholderia pseudomallei S13] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP II AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAIINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158 >gi|171318235|ref|ZP_02907398.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5] gi|172060237|ref|YP_001807889.1| transcription elongation factor GreA [Burkholderia ambifaria MC40-6] gi|171096579|gb|EDT41473.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5] gi|171992754|gb|ACB63673.1| transcription elongation factor GreA [Burkholderia ambifaria MC40-6] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|78065906|ref|YP_368675.1| transcription elongation factor GreA [Burkholderia sp. 383] gi|77966651|gb|ABB08031.1| transcription elongation factor GreA [Burkholderia sp. 383] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + ++ EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|302879460|ref|YP_003848024.1| transcription elongation factor GreA [Gallionella capsiferriformans ES-2] gi|302582249|gb|ADL56260.1| transcription elongation factor GreA [Gallionella capsiferriformans ES-2] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T G DK++QEL + ERP +I AISEARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 3 KIPLTLVGADKMRQELHKLKTVERPWVINAISEARAQGDLSENAEYEAAKDRQGFVEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE + A++ID T++ + R FG+TV L E NSGD YQIVGD EAD+++ +SI Sbjct: 63 IELEGKLGSAQIIDPKTLNANGRCVFGSTVILEEMNSGDVVTYQIVGDDEADIKARKISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALIGK GD+ V PGG + YE+++V +I Sbjct: 123 SSPIARALIGKSSGDVAEVKTPGGIREYELIEVQYI 158 >gi|188575985|ref|YP_001912914.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae PXO99A] gi|289663383|ref|ZP_06484964.1| transcription elongation factor GreA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668838|ref|ZP_06489913.1| transcription elongation factor GreA [Xanthomonas campestris pv. musacearum NCPPB4381] gi|188520437|gb|ACD58382.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 154 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|126740555|ref|ZP_01756242.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6] gi|126718356|gb|EBA15071.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6] Length = 156 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPAGHTAMESELKNLKSVERPSIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGIIGLADVIDPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGE++YEIL++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155 >gi|254491388|ref|ZP_05104567.1| transcription elongation factor GreA subfamily [Methylophaga thiooxidans DMS010] gi|224462866|gb|EEF79136.1| transcription elongation factor GreA subfamily [Methylophaga thiooxydans DMS010] Length = 158 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+TS+G + ++ EL+ + RP ++ AISEARA+GDL ENAEY AAKE Q+ EGR+ Sbjct: 3 VPITSRGAEALKHELKELKSVARPTVVAAISEARAHGDLKENAEYHAAKEQQSFIEGRIQ 62 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE +++ A+VID +++ D R+ FG TVSL+ ++ ++K YQIVGD E+D++ +S+S Sbjct: 63 ELEGVLSNAQVIDPASLPQDGRVVFGVTVSLLNIDTDEEKAYQIVGDYESDIKLNRISVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE+ DI +V APGG YEI+++ + Sbjct: 123 SPIARALIGKEIDDIATVQAPGGNIEYEIIEISY 156 >gi|120611280|ref|YP_970958.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1] gi|120589744|gb|ABM33184.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1] Length = 158 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + +G R+ FGATV L ++ SGD YQIVG+ EAD++ GL+++S Sbjct: 64 EVEGKLSAAQVIDPAQLDAGGRVVFGATVDLEDEESGDLVTYQIVGEDEADLKQGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD V APGG + YE++ V + Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157 >gi|53718991|ref|YP_107977.1| transcription elongation factor GreA [Burkholderia pseudomallei K96243] gi|53725562|ref|YP_102536.1| transcription elongation factor GreA [Burkholderia mallei ATCC 23344] gi|67639733|ref|ZP_00438570.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse 4] gi|76811771|ref|YP_333015.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710b] gi|121601156|ref|YP_992619.1| transcription elongation factor GreA [Burkholderia mallei SAVP1] gi|124384628|ref|YP_001026579.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10229] gi|126439860|ref|YP_001058521.1| transcription elongation factor GreA [Burkholderia pseudomallei 668] gi|126448841|ref|YP_001080136.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10247] gi|126451730|ref|YP_001065781.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106a] gi|134282748|ref|ZP_01769451.1| transcription elongation factor GreA [Burkholderia pseudomallei 305] gi|167002793|ref|ZP_02268583.1| transcription elongation factor GreA [Burkholderia mallei PRL-20] gi|167719061|ref|ZP_02402297.1| transcription elongation factor GreA [Burkholderia pseudomallei DM98] gi|167738059|ref|ZP_02410833.1| transcription elongation factor GreA [Burkholderia pseudomallei 14] gi|167815243|ref|ZP_02446923.1| transcription elongation factor GreA [Burkholderia pseudomallei 91] gi|167823652|ref|ZP_02455123.1| transcription elongation factor GreA [Burkholderia pseudomallei 9] gi|167845196|ref|ZP_02470704.1| transcription elongation factor GreA [Burkholderia pseudomallei B7210] gi|167893747|ref|ZP_02481149.1| transcription elongation factor GreA [Burkholderia pseudomallei 7894] gi|167902197|ref|ZP_02489402.1| transcription elongation factor GreA [Burkholderia pseudomallei NCTC 13177] gi|167910439|ref|ZP_02497530.1| transcription elongation factor GreA [Burkholderia pseudomallei 112] gi|167918464|ref|ZP_02505555.1| transcription elongation factor GreA [Burkholderia pseudomallei BCC215] gi|217423500|ref|ZP_03455001.1| transcription elongation factor GreA [Burkholderia pseudomallei 576] gi|226196142|ref|ZP_03791727.1| transcription elongation factor GreA [Burkholderia pseudomallei Pakistan 9] gi|237811774|ref|YP_002896225.1| transcription elongation factor GreA [Burkholderia pseudomallei MSHR346] gi|242317287|ref|ZP_04816303.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106b] gi|254177940|ref|ZP_04884595.1| transcription elongation factor GreA [Burkholderia mallei ATCC 10399] gi|254180206|ref|ZP_04886805.1| transcription elongation factor GreA [Burkholderia pseudomallei 1655] gi|254188375|ref|ZP_04894886.1| transcription elongation factor GreA [Burkholderia pseudomallei Pasteur 52237] gi|254199447|ref|ZP_04905813.1| transcription elongation factor GreA [Burkholderia mallei FMH] gi|254205760|ref|ZP_04912112.1| transcription elongation factor GreA [Burkholderia mallei JHU] gi|254259727|ref|ZP_04950781.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710a] gi|254298040|ref|ZP_04965493.1| transcription elongation factor GreA [Burkholderia pseudomallei 406e] gi|254358839|ref|ZP_04975112.1| transcription elongation factor GreA [Burkholderia mallei 2002721280] gi|52209405|emb|CAH35350.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52428985|gb|AAU49578.1| transcription elongation factor GreA [Burkholderia mallei ATCC 23344] gi|76581224|gb|ABA50699.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710b] gi|121229966|gb|ABM52484.1| transcription elongation factor GreA [Burkholderia mallei SAVP1] gi|124292648|gb|ABN01917.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10229] gi|126219353|gb|ABN82859.1| transcription elongation factor GreA [Burkholderia pseudomallei 668] gi|126225372|gb|ABN88912.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106a] gi|126241711|gb|ABO04804.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10247] gi|134245834|gb|EBA45925.1| transcription elongation factor GreA [Burkholderia pseudomallei 305] gi|147749043|gb|EDK56117.1| transcription elongation factor GreA [Burkholderia mallei FMH] gi|147753203|gb|EDK60268.1| transcription elongation factor GreA [Burkholderia mallei JHU] gi|148027966|gb|EDK85987.1| transcription elongation factor GreA [Burkholderia mallei 2002721280] gi|157807730|gb|EDO84900.1| transcription elongation factor GreA [Burkholderia pseudomallei 406e] gi|157936054|gb|EDO91724.1| transcription elongation factor GreA [Burkholderia pseudomallei Pasteur 52237] gi|160698979|gb|EDP88949.1| transcription elongation factor GreA [Burkholderia mallei ATCC 10399] gi|184210746|gb|EDU07789.1| transcription elongation factor GreA [Burkholderia pseudomallei 1655] gi|217393358|gb|EEC33379.1| transcription elongation factor GreA [Burkholderia pseudomallei 576] gi|225931728|gb|EEH27730.1| transcription elongation factor GreA [Burkholderia pseudomallei Pakistan 9] gi|237503724|gb|ACQ96042.1| transcription elongation factor GreA [Burkholderia pseudomallei MSHR346] gi|238520332|gb|EEP83793.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse 4] gi|242140526|gb|EES26928.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106b] gi|243061554|gb|EES43740.1| transcription elongation factor GreA [Burkholderia mallei PRL-20] gi|254218416|gb|EET07800.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710a] Length = 158 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158 >gi|187477431|ref|YP_785455.1| transcription elongation factor [Bordetella avium 197N] gi|115422017|emb|CAJ48539.1| transcription elongation factor [Bordetella avium 197N] Length = 158 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++ QEL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A Sbjct: 4 IPLTVRGAERLNQELHRLKTIERPAVINAIAEARAQGDLSENAEYDAARERQAFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID S + + R FGATV + + SGD+ YQIVGD EAD++S L+S+S Sbjct: 64 ELEGTLSNAHLIDPSALDAEGRAVFGATVEIEDLGSGDRLTYQIVGDVEADIKSNLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V AP G + YE++ V ++ Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGLREYEVIGVRYL 158 >gi|171059502|ref|YP_001791851.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6] gi|170776947|gb|ACB35086.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 4 IPLTKRGAELLKEELQRLKTIERPWVINAIAEARAQGDLSENAEYEAAKDKQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E + A+VID + + +G R+ FGATV L E+ SGD YQIVG+ EAD++ GLVS+ Sbjct: 64 DVEGKLAIAQVIDPAVLDAGGRVVFGATVDLEEEESGDAVTYQIVGEDEADLKKGLVSVG 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD+ V APGG K YE+++V ++ Sbjct: 124 SPIARALIGKEAGDVAEVQAPGGVKRYEVVEVRYV 158 >gi|237745681|ref|ZP_04576161.1| GreA transcription elongation factor [Oxalobacter formigenes HOxBLS] gi|229377032|gb|EEO27123.1| GreA transcription elongation factor [Oxalobacter formigenes HOxBLS] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 118/155 (76%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IPVT +G +++EL + ++R +I AI+EAR++GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A+VID +T++ + RI F ATV+L + +G+K +YQIVG+ EAD++ +SI+ Sbjct: 64 ELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKISIT 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIG+E GD++ VNAP G + YEIL+VL+I Sbjct: 124 SPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158 >gi|325578454|ref|ZP_08148589.1| transcription elongation factor GreA [Haemophilus parainfluenzae ATCC 33392] gi|325160190|gb|EGC72319.1| transcription elongation factor GreA [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + ++QEL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLRQELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+S+ Sbjct: 63 QEIESKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKEL D +++ PGG +EI++V +I Sbjct: 123 NSPIARGLVGKELDDTVNITTPGGAVEFEIIEVNYI 158 >gi|33593266|ref|NP_880910.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33596678|ref|NP_884321.1| transcription elongation factor [Bordetella parapertussis 12822] gi|33600442|ref|NP_888002.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|29603208|emb|CAC79553.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33563641|emb|CAE42542.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33568041|emb|CAE31954.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|33573379|emb|CAE37363.1| transcription elongation factor [Bordetella parapertussis] gi|332382675|gb|AEE67522.1| transcription elongation factor [Bordetella pertussis CS] Length = 158 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++QQEL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR++ Sbjct: 4 IPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRIS 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A +ID + + + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S Sbjct: 64 ELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD++ V P G + YE++ V ++ Sbjct: 124 SPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL 158 >gi|218660639|ref|ZP_03516569.1| transcription elongation factor GreA [Rhizobium etli IE4771] Length = 119 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/115 (66%), Positives = 96/115 (83%) Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102 ENAEY AAKE Q+ NEGR++EL+++ RAEVID++ MSGD+I FGA V LV++++ ++ Sbjct: 4 FPENAEYHAAKEAQSHNEGRISELKDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEE 63 Query: 103 KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 64 KTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 118 >gi|238918415|ref|YP_002931929.1| hypothetical protein NT01EI_0456 [Edwardsiella ictaluri 93-146] gi|238867983|gb|ACR67694.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 158 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FG+TVS+ N+ D++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLNTEDQQTYRIVGDDEADFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD++++ PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILNVEYL 158 >gi|225023997|ref|ZP_03713189.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC 23834] gi|224943022|gb|EEG24231.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC 23834] Length = 162 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/159 (51%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ KIP+T +G + ++QEL+ + ERP II+AI+EAR +GDLSENAEY+AAKE Q E Sbjct: 4 IMQKIPLTVRGAELLKQELQHLKSVERPAIIEAIAEARTHGDLSENAEYEAAKEKQGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR++ELEN ++ A +ID + + + +I FG TV L + + + YQIVGD EAD++ Sbjct: 64 GRISELENKLSAAHIIDPTEIHAEGKIVFGCTVVLEDLENETQVRYQIVGDDEADIKDNK 123 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPI+RALIGKE GD+ V APGG + YE+++VL+I Sbjct: 124 ISISSPISRALIGKEEGDVAEVQAPGGIREYEVIEVLYI 162 >gi|94311130|ref|YP_584340.1| transcription elongation factor GreA [Cupriavidus metallidurans CH34] gi|93354982|gb|ABF09071.1| transcription elongation factor [Cupriavidus metallidurans CH34] Length = 173 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 19 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 78 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + D RI FGATV L E SG+ +YQIVGD EAD+ +G +S+S Sbjct: 79 EVEAKLSAAQVIDPTQLDTDGRIVFGATVDLEELESGNPVSYQIVGDDEADLDTGKISVS 138 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ V APGGE+ YE++ V +I Sbjct: 139 SPIARALIGKFEGDVAVVLAPGGEREYEVITVRYI 173 >gi|253991511|ref|YP_003042867.1| transcription elongation factor GreA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638389|emb|CAR67011.1| transcription elongation factor grea (transcript cleavage facto grea) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782961|emb|CAQ86126.1| transcription elongation factor grea (transcript cleavage facto grea) [Photorhabdus asymbiotica] Length = 158 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M R+ FGATV+ + N+ +++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMPKTGRVIFGATVTALNVNTDEEQTYRIVGDDEADIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ DI+++ PGGE YEIL+V +I Sbjct: 123 NSPIARGLIGKEVDDIVTIKTPGGEVEYEILKVEYI 158 >gi|73541862|ref|YP_296382.1| transcription elongation factor GreA [Ralstonia eutropha JMP134] gi|72119275|gb|AAZ61538.1| transcription elongation factor GreA [Ralstonia eutropha JMP134] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPITKRGAELLKEELHRLKAVERPAVINAIAEARAQGDLSENAEYDAAKEKQAFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A+VID + + D RI FGATV L + SG +YQIVGD EAD+ SG +S+S Sbjct: 64 EVESKLSAAQVIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLDSGKISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE++ V ++ Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYV 158 >gi|71897683|ref|ZP_00679928.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|71732586|gb|EAO34639.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+I Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLADLETDEESRYQIVGDLEADIKQGLVAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|163738891|ref|ZP_02146304.1| transcription elongation factor GreA [Phaeobacter gallaeciensis BS107] gi|163741863|ref|ZP_02149253.1| transcription elongation factor GreA [Phaeobacter gallaeciensis 2.10] gi|161385036|gb|EDQ09415.1| transcription elongation factor GreA [Phaeobacter gallaeciensis 2.10] gi|161387696|gb|EDQ12052.1| transcription elongation factor GreA [Phaeobacter gallaeciensis BS107] Length = 156 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPTGHAALETELKTLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG++ YEIL++++ Sbjct: 120 IRSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155 >gi|28198317|ref|NP_778631.1| transcription elongation factor GreA [Xylella fastidiosa Temecula1] gi|182680956|ref|YP_001829116.1| transcription elongation factor GreA [Xylella fastidiosa M23] gi|32129572|sp|Q87EB7|GREA_XYLFT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238691084|sp|B2I844|GREA_XYLF2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28056387|gb|AAO28280.1| transcriptional elongation factor [Xylella fastidiosa Temecula1] gi|182631066|gb|ACB91842.1| transcription elongation factor GreA [Xylella fastidiosa M23] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+I Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|326317398|ref|YP_004235070.1| transcription elongation factor GreA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374234|gb|ADX46503.1| transcription elongation factor GreA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+ Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + +G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+++S Sbjct: 64 EVEGKLSAAQVIDPAQLDAGGKVVFGATVDLEDEESGDPVTYQIVGEDEADLKQGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD V APGG + YE++ V + Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157 >gi|37528357|ref|NP_931702.1| transcription elongation factor GreA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787795|emb|CAE16910.1| transcription elongation factor greA (transcript cleavage factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M G R+ FG TV+++ N+ +++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMPKGGRVIFGTTVTVLNVNTDEEQTYRIVGDDEADIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL+V +I Sbjct: 123 NSPIARGLIGKEVDDVVIIKTPGGEVEYEILKVEYI 158 >gi|91775133|ref|YP_544889.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91709120|gb|ABE49048.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 158 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG + ++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG Sbjct: 1 MNQIPITVKGAELLKAELQRLRSVDRPAVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A +ID +T++ + R FGATV + + +SG+ YQIVGD EAD++SG + Sbjct: 61 RIAEIEAKLSNAMIIDPATLNAEGRCVFGATVEVEDLDSGEVSTYQIVGDDEADIKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGK GD+ V APGG ++YEIL V +I Sbjct: 121 SIGSPIARALIGKVEGDVAEVVAPGGLRSYEILSVKYI 158 >gi|194290079|ref|YP_002005986.1| transcription elongation factor grea [Cupriavidus taiwanensis LMG 19424] gi|193223914|emb|CAQ69923.1| transcription elongation factor [Cupriavidus taiwanensis LMG 19424] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+++G +S+S Sbjct: 64 EVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLEAGKISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE++ V +I Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158 >gi|310815067|ref|YP_003963031.1| transcription elongation factor GreA [Ketogulonicigenium vulgare Y25] gi|308753802|gb|ADO41731.1| transcription elongation factor GreA [Ketogulonicigenium vulgare Y25] Length = 156 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 123/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GFDK+ EL+ + ERP II AI+EARA+GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPLTRTGFDKLDVELKHLKSVERPAIIAAIAEARAHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVID S +SG I FGA V+LV++++ ++K YQIVG+ EADV++G ++ Sbjct: 61 RIKELEGVISLAEVIDTSRLSG-TIKFGAMVTLVDEDTDEEKAYQIVGEYEADVENGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++GD + V PGG+++YE+L +++ Sbjct: 120 IKSPLARALIGKDVGDSVEVRTPGGDRSYEVLNIVY 155 >gi|255020830|ref|ZP_05292886.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC 51756] gi|254969621|gb|EET27127.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 115/159 (72%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DKIP+T G ++++EL+ + ++RP +I+AI+EARA GDLSENAEY AAKE Q E Sbjct: 1 MSDKIPMTVVGAQRLREELQRLKSQDRPAVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ + RA++ID +++ D RI FGATV L E + G YQIVGD EAD++ Sbjct: 61 GRIREIEDFLARAQIIDPRSLNTDGRIVFGATVEL-EDSDGKAITYQIVGDAEADIKENK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP+ARALIGK GD + VNAPGG + Y IL V ++ Sbjct: 120 ISISSPLARALIGKHEGDSVEVNAPGGIREYSILGVRYL 158 >gi|83747766|ref|ZP_00944800.1| Transcription elongation factor greA (transcription cleavage factor) [Ralstonia solanacearum UW551] gi|83725538|gb|EAP72682.1| Transcription elongation factor greA (transcription cleavage factor) [Ralstonia solanacearum UW551] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SIS Sbjct: 64 EIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158 >gi|254476447|ref|ZP_05089833.1| transcription elongation factor GreA [Ruegeria sp. R11] gi|214030690|gb|EEB71525.1| transcription elongation factor GreA [Ruegeria sp. R11] Length = 156 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPTGHAALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGGE++YEIL +++ Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGERSYEILTIVY 155 >gi|30249624|ref|NP_841694.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] gi|30138987|emb|CAD85571.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 173 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/159 (51%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++ IP+T G +K++ EL + RP +I AI+EAR++GDLSENAEY AAKE Q E Sbjct: 15 VMNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAEARSHGDLSENAEYDAAKERQGFIE 74 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELE+ ++ A++I+ +T++ D FGAT+ L++ + YQIVGD EAD++ G Sbjct: 75 GRIAELESKLSNAQIINPATLNADGACVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGK 134 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARALIGK GDI V APGG + YEIL V +I Sbjct: 135 ISISSPIARALIGKYAGDIAEVQAPGGVREYEILDVKYI 173 >gi|297539177|ref|YP_003674946.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297258524|gb|ADI30369.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 160 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V +IPVT KG +++++EL + +RP +I+AI+EARA GDLSENAEY+AAKE Q+ EG Sbjct: 3 VTQIPVTVKGAEQLKEELLRLRSVDRPWVIQAIAEARAQGDLSENAEYEAAKERQSFIEG 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A +ID ST+ D R FG+TV + + +SG YQIVGD EAD+++G + Sbjct: 63 RIAEVEAKLSNAMIIDPSTLHADGRCVFGSTVRIEDLDSGSIITYQIVGDDEADIKNGKI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPI+R LIGK GD+ V APGG K YEIL+V +I Sbjct: 123 SVSSPISRGLIGKSEGDVAEVMAPGGVKEYEILEVQYI 160 >gi|301156348|emb|CBW15819.1| transcription elongation factor [Haemophilus parainfluenzae T3T1] Length = 158 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG +EI++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGTVEFEIIEVNYI 158 >gi|291287665|ref|YP_003504481.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM 12809] gi|290884825|gb|ADD68525.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM 12809] Length = 157 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 119/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T++G+ ++++EL + +R I+ AI+EAR++GDLSENAEY AAKE Q + E Sbjct: 1 MDRIPITTEGYARLKKELEKLKTIDRKEIVAAIAEARSHGDLSENAEYDAAKERQGMIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + R +VID ++SGD+I FGATV++ + ++KNY+IVG EA++ +G +S Sbjct: 61 RIAELESKMGRFQVIDTKSLSGDKIVFGATVTIENIETEEQKNYKIVGPDEANISNGTIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K++GD + V APGGE YE+L+V + Sbjct: 121 IMSPLARALVNKKVGDEVLVVAPGGELEYEVLEVKF 156 >gi|289207885|ref|YP_003459951.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix] gi|288943516|gb|ADC71215.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix] Length = 159 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL+ + E+RPR++ AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKTPLTVTGAEKMKAELKKLKGEDRPRVVNAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++ID++ + ++ FG TV L G + Y+IVG+ EAD++ ++ Sbjct: 61 RIRELEGKLSNAQIIDVTALPQTGKVVFGVTVVLEATEDGRQVTYKIVGEDEADIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGKE GD+++V APGGE YEIL+V ++ Sbjct: 121 SVSSPIARALIGKEEGDVVTVQAPGGETEYEILEVRYV 158 >gi|325922459|ref|ZP_08184226.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC 19865] gi|325547079|gb|EGD18166.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC 19865] Length = 154 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVISAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQRDYEVVSVAYL 153 >gi|269137754|ref|YP_003294454.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267983414|gb|ACY83243.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304557811|gb|ADM40475.1| Transcription elongation factor GreA [Edwardsiella tarda FL6-60] Length = 158 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FG+TVS+ ++ D++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLDTEDQQTYRIVGDDEADFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD++++ PGGE YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILKVEYL 158 >gi|325915491|ref|ZP_08177804.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC 35937] gi|325538292|gb|EGD09975.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC 35937] Length = 154 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVIAAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|254468129|ref|ZP_05081535.1| GreA/GreB family elongation factor [beta proteobacterium KB13] gi|207086939|gb|EDZ64222.1| GreA/GreB family elongation factor [beta proteobacterium KB13] Length = 159 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 79/159 (49%), Positives = 115/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +IP+T G +++++EL + ++RP II+AI+EARA GDLSENAEY++AKE Q E Sbjct: 1 MAGQIPMTRNGVERLKEELHQLKSQDRPNIIQAIAEARAQGDLSENAEYESAKERQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E ++ ++ID S ++ D + FGAT+ L + + YQIVG+ EAD+++ Sbjct: 61 GRIAEIEAKLSNVQIIDPSVLNADGKCVFGATIELEDLDEEKSFTYQIVGEDEADIKANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP+ARALIGKE GD++ V PGG+KTYEI V +I Sbjct: 121 ISISSPLARALIGKEDGDVVEVETPGGQKTYEITNVSYI 159 >gi|71276055|ref|ZP_00652336.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Dixon] gi|71899477|ref|ZP_00681635.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|170729661|ref|YP_001775094.1| transcription elongation factor GreA [Xylella fastidiosa M12] gi|238687951|sp|B0U568|GREA_XYLFM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71163138|gb|EAO12859.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Dixon] gi|71730790|gb|EAO32863.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|167964454|gb|ACA11464.1| GreA/GreB family elongation factor [Xylella fastidiosa M12] Length = 158 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTLKGVRRLRDELEHLKLVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|294788006|ref|ZP_06753250.1| transcription elongation factor GreA [Simonsiella muelleri ATCC 29453] gi|294484299|gb|EFG31982.1| transcription elongation factor GreA [Simonsiella muelleri ATCC 29453] Length = 158 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 118/156 (75%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+TS+G +K++ EL+ + RP II AI+EAR++GDLSENAEY++AKE Q EGR+ Sbjct: 3 KIPLTSQGAEKLKNELQHLKSVARPEIIAAIAEARSHGDLSENAEYESAKERQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE+ ++ A++I+ + + + +I FGATV++++ +S ++ YQIVGD EAD++ +S+ Sbjct: 63 AELESKLSHAQIINPAEIHAEGKIVFGATVTVMDLDSDEESTYQIVGDDEADIKLFKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARA+IGKE GD+ V AP G + YEIL V +I Sbjct: 123 SSPIARAMIGKEEGDVAEVQAPSGIREYEILSVQYI 158 >gi|241763933|ref|ZP_04761975.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN] gi|241366756|gb|EER61197.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN] Length = 158 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EGR+ Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVITAIAEARAQGDLSENADYDAAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID ++ G ++ FGATV L +++SGD YQIVG+ EAD++ GL++IS Sbjct: 64 EIEGKLSVAQVIDPGSVDGGGKVVFGATVELEDEDSGDTVTYQIVGEDEADLKHGLINIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD V APGG + YE++ V + Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVAVRY 157 >gi|300703811|ref|YP_003745413.1| transcription elongation factor [Ralstonia solanacearum CFBP2957] gi|299071474|emb|CBJ42794.1| transcription elongation factor [Ralstonia solanacearum CFBP2957] Length = 158 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SIS Sbjct: 64 EIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158 >gi|224823861|ref|ZP_03696970.1| transcription elongation factor GreA [Lutiella nitroferrum 2002] gi|224604316|gb|EEG10490.1| transcription elongation factor GreA [Lutiella nitroferrum 2002] Length = 158 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNKVPLTLRGAELLKEELQRLKSVERPAVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A++I+ S + + RI FG TV L++ + D+ YQIVGD EAD++ V Sbjct: 61 RIAELEGKLSNAQIINPSELDAEGRIVFGTTVELMDLETEDEVTYQIVGDDEADIKFAKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD+ V APGG + YEIL V +I Sbjct: 121 SVNSPIARALIGKEAGDVAEVMAPGGIREYEILDVKYI 158 >gi|285018124|ref|YP_003375835.1| transcription elongation factor grea (transcript cleavage factor grea) protein [Xanthomonas albilineans GPE PC73] gi|283473342|emb|CBA15847.1| probable transcription elongation factor grea (transcript cleavage factor grea) protein [Xanthomonas albilineans] Length = 158 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 2 RAPITLQGAQRLREELDHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQGFIEGRI 61 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE+ ++ AEVIDIS ++ G ++ FGATV+L + + ++K YQ+VGD EAD++ GL++I Sbjct: 62 KQLESELSHAEVIDISKLAVGSKVVFGATVTLADVETDEEKRYQLVGDLEADIKLGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARALIGK GD + ++AP G + YEI+ V ++ Sbjct: 122 SSPLARALIGKMEGDSVGIDAPAGHREYEIVSVQYL 157 >gi|253826205|gb|ACT36389.1| transcriptional elogation factor GreA [uncultured bacterium L11E10] Length = 158 Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 77/155 (49%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++++EL + + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 2 RAPITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AEVID++ + +G R+ FGATV L ++ ++K YQIVGD EAD++ L++I Sbjct: 62 NQLEAELSTAEVIDVAVLDAGSRVVFGATVILAHVDTDEQKTYQIVGDLEADIKQSLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIARALIGK GD + + AP GE YEI+ V + Sbjct: 122 SSPIARALIGKNEGDSVVIQAPAGEHEYEIISVSY 156 >gi|251792645|ref|YP_003007371.1| transcription elongation factor GreA [Aggregatibacter aphrophilus NJ8700] gi|247534038|gb|ACS97284.1| transcription elongation factor GreA [Aggregatibacter aphrophilus NJ8700] Length = 158 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLRKELEYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++ID++ + + ++ FGATV+LV N+ D+ Y+IVGD EAD+++GL+S+ Sbjct: 63 QEIEGKLANCQIIDVTKIPNNGKVIFGATVTLVNTNTNDEVTYRIVGDDEADIKNGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D++++ PGG +EI++V ++ Sbjct: 123 NSPIARGLIGKEQDDVVNITTPGGVVEFEIIEVEYV 158 >gi|253999583|ref|YP_003051646.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4] gi|313201618|ref|YP_004040276.1| transcription elongation factor grea [Methylovorus sp. MP688] gi|253986262|gb|ACT51119.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4] gi|312440934|gb|ADQ85040.1| transcription elongation factor GreA [Methylovorus sp. MP688] Length = 158 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G + ++QEL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG Sbjct: 1 MNQIPITVNGAELLKQELQRLRSVDRPNVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A VID T++ + R FGATV + + ++GD YQIVGD EAD++ G + Sbjct: 61 RIAEIEAKLSNAMVIDPKTLNAEGRCVFGATVEVEDLDNGDVSTYQIVGDDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIAR LIGK GD+ V APGG ++YE+L V +I Sbjct: 121 SIGSPIARGLIGKTAGDVAEVMAPGGLRSYEVLDVQYI 158 >gi|53803860|ref|YP_114288.1| transcription elongation factor GreA [Methylococcus capsulatus str. Bath] gi|81681779|sp|Q607B0|GREA_METCA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|53757621|gb|AAU91912.1| transcription elongation factor GreA [Methylococcus capsulatus str. Bath] Length = 158 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T++G +K+++EL + RPR+I+AI+EARA+GDL ENAEYQAA+E Q EG Sbjct: 1 MNKTPMTTRGAEKLREELNHLKTVARPRVIEAIAEARAHGDLKENAEYQAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ ++ G ++ FGAT + + SG+ YQIVG+ EA+++ G + Sbjct: 61 RIKEIEAKLANAQIIDVTRLNPGGKVVFGATAEIEDLASGEVVTYQIVGEDEAEIKEGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK+ GD+ +V APGG + YEI+ V ++ Sbjct: 121 SVTSPIARALIGKQEGDVATVQAPGGTREYEIVSVRYV 158 >gi|260913960|ref|ZP_05920434.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC 43325] gi|260632047|gb|EEX50224.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC 43325] Length = 158 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLRQELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ +VID++ M + ++ FGATV L+ ++ D+ +YQIVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLSNCQVIDVTKMPNNGKVIFGATVVLLNVDTDDEVSYQIVGDDEANIKDGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++++ PGG+ +EI++V ++ Sbjct: 123 NSPIARGLIGKEVDDVVAIQTPGGKVEFEIIEVNYV 158 >gi|17546241|ref|NP_519643.1| transcription elongation factor GreA [Ralstonia solanacearum GMI1000] gi|25452993|sp|Q8XZ82|GREA_RALSO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|17428538|emb|CAD15224.1| probable transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum GMI1000] gi|299066489|emb|CBJ37679.1| transcription elongation factor [Ralstonia solanacearum CMR15] Length = 158 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ + A+VID + + D RI FGAT+ L + +SG YQIVGD EAD+ SG +SIS Sbjct: 64 EIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158 >gi|22124593|ref|NP_668016.1| transcription elongation factor GreA [Yersinia pestis KIM 10] gi|45440432|ref|NP_991971.1| transcription elongation factor GreA [Yersinia pestis biovar Microtus str. 91001] gi|51594823|ref|YP_069014.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 32953] gi|108806053|ref|YP_649969.1| transcription elongation factor GreA [Yersinia pestis Antiqua] gi|108813409|ref|YP_649176.1| transcription elongation factor GreA [Yersinia pestis Nepal516] gi|145600801|ref|YP_001164877.1| transcription elongation factor GreA [Yersinia pestis Pestoides F] gi|153947048|ref|YP_001402559.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 31758] gi|153997282|ref|ZP_02022382.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|162421747|ref|YP_001608277.1| transcription elongation factor GreA [Yersinia pestis Angola] gi|165928150|ref|ZP_02223982.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937569|ref|ZP_02226132.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. IP275] gi|166011327|ref|ZP_02232225.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214002|ref|ZP_02240037.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401279|ref|ZP_02306779.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420462|ref|ZP_02312215.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423351|ref|ZP_02315104.1| transcription elongation factor GreA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470193|ref|ZP_02334897.1| transcription elongation factor GreA [Yersinia pestis FV-1] gi|170025954|ref|YP_001722459.1| transcription elongation factor GreA [Yersinia pseudotuberculosis YPIII] gi|186893832|ref|YP_001870944.1| transcription elongation factor GreA [Yersinia pseudotuberculosis PB1/+] gi|218930519|ref|YP_002348394.1| transcription elongation factor GreA [Yersinia pestis CO92] gi|229839158|ref|ZP_04459317.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896647|ref|ZP_04511814.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|229899722|ref|ZP_04514863.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903884|ref|ZP_04518997.1| transcription elongation factor [Yersinia pestis Nepal516] gi|270489127|ref|ZP_06206201.1| transcription elongation factor GreA [Yersinia pestis KIM D27] gi|25452996|sp|Q8ZBB3|GREA_YERPE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238687311|sp|A9R594|GREA_YERPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21957396|gb|AAM84267.1|AE013670_4 transcription elongation factor [Yersinia pestis KIM 10] gi|45435289|gb|AAS60848.1| transcription elongation factor [Yersinia pestis biovar Microtus str. 91001] gi|51588105|emb|CAH19711.1| transcription elongation factor [Yersinia pseudotuberculosis IP 32953] gi|108777057|gb|ABG19576.1| transcription elongation factor GreA [Yersinia pestis Nepal516] gi|108777966|gb|ABG12024.1| transcription elongation factor GreA [Yersinia pestis Antiqua] gi|115349130|emb|CAL22093.1| transcription elongation factor [Yersinia pestis CO92] gi|145212497|gb|ABP41904.1| transcription elongation factor GreA [Yersinia pestis Pestoides F] gi|149288919|gb|EDM38999.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|152958543|gb|ABS46004.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 31758] gi|162354562|gb|ABX88510.1| transcription elongation factor GreA [Yersinia pestis Angola] gi|165914674|gb|EDR33288.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. IP275] gi|165919837|gb|EDR37138.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. F1991016] gi|165989711|gb|EDR42012.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204797|gb|EDR49277.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961268|gb|EDR57289.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049304|gb|EDR60712.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057521|gb|EDR67267.1| transcription elongation factor GreA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752488|gb|ACA70006.1| transcription elongation factor GreA [Yersinia pseudotuberculosis YPIII] gi|186696858|gb|ACC87487.1| transcription elongation factor GreA [Yersinia pseudotuberculosis PB1/+] gi|229679654|gb|EEO75757.1| transcription elongation factor [Yersinia pestis Nepal516] gi|229687214|gb|EEO79289.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695524|gb|EEO85571.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700425|gb|EEO88457.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|262363429|gb|ACY60150.1| transcription elongation factor GreA [Yersinia pestis D106004] gi|262367196|gb|ACY63753.1| transcription elongation factor GreA [Yersinia pestis D182038] gi|270337631|gb|EFA48408.1| transcription elongation factor GreA [Yersinia pestis KIM D27] gi|320013709|gb|ADV97280.1| transcription elongation factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 158 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +++NY+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ ++ PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 158 >gi|15837710|ref|NP_298398.1| transcription elongation factor GreA [Xylella fastidiosa 9a5c] gi|11279753|pir||D82723 transcription elongation factor XF1108 [imported] - Xylella fastidiosa (strain 9a5c) gi|9106063|gb|AAF83918.1|AE003946_9 transcriptional elongation factor [Xylella fastidiosa 9a5c] Length = 154 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 79/153 (51%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AEVID++ + +G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISSP Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153 >gi|197287221|ref|YP_002153093.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227357084|ref|ZP_03841454.1| transcription elongation factor [Proteus mirabilis ATCC 29906] gi|194684708|emb|CAR46682.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227162776|gb|EEI47739.1| transcription elongation factor [Proteus mirabilis ATCC 29906] Length = 158 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTVLGAEKLREELEYLKSVRRPEITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M+ + RI FGATV+L+ ++ +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMTNNGRIIFGATVTLLNVDTEEEQKYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D++ +N PGG+ YE+L V +I Sbjct: 121 SVNSPIARGLIGKELDDVVVINTPGGQVEYEVLNVEYI 158 >gi|113868419|ref|YP_726908.1| transcription elongation factor GreA [Ralstonia eutropha H16] gi|113527195|emb|CAJ93540.1| transcription elongation factor GreA [Ralstonia eutropha H16] Length = 158 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+ G +S+S Sbjct: 64 EVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADIDVGKISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE++ V +I Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158 >gi|330816264|ref|YP_004359969.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3] gi|327368657|gb|AEA60013.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3] Length = 158 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTKRGAEQLRSELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A+VID S + + R+ FGATV L + S YQIVGD EAD+ GL+S+S Sbjct: 64 EIESKLSAAQVIDPSVIDAEGRVVFGATVELEDLGSSATVKYQIVGDDEADIDHGLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYV 158 >gi|114763611|ref|ZP_01443016.1| transcription elongation factor GreA [Pelagibaca bermudensis HTCC2601] gi|114543891|gb|EAU46903.1| transcription elongation factor GreA [Roseovarius sp. HTCC2601] Length = 156 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T GF ++ EL+ + +ERP +I+AI+EAR GDL ENAEY +A+E Q EG Sbjct: 1 MEKILITRAGFTALETELKTLKSKERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E +++ AEVID + +SG + FGATV +V++++ ++K +QIVG+ EA++ GL++ Sbjct: 61 RIKEIEAVMSLAEVIDPTKLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEANIDKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SPIARALIGKE GD + V PGGEK+YEIL + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGEKSYEILSI 153 >gi|190574174|ref|YP_001972019.1| transcription elongation factor GreA [Stenotrophomonas maltophilia K279a] gi|190012096|emb|CAQ45718.1| putative transcription elongation factor [Stenotrophomonas maltophilia K279a] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 2 RAPITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AE+ID+S + +G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++I Sbjct: 62 KQLEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKQGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARA+IGK GD I ++AP G++ YEI+ V ++ Sbjct: 122 SSPVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYV 157 >gi|291613526|ref|YP_003523683.1| transcription elongation factor GreA [Sideroxydans lithotrophicus ES-1] gi|291583638|gb|ADE11296.1| transcription elongation factor GreA [Sideroxydans lithotrophicus ES-1] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/156 (54%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G + ++QEL + +RP +I AISEARA GDLSENAEY+AAKE Q+ EGR+ Sbjct: 3 KVPLTVNGAELLRQELHRLKTVDRPSVINAISEARAQGDLSENAEYEAAKERQSFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE + A+VID T++ D R FG+TV + + N+GD YQIVGD EAD++ +SI Sbjct: 63 VELEFKLGSAQVIDPKTVNADGRCVFGSTVVIEDTNNGDVVTYQIVGDDEADIKQRKISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALIGK GDI V APGG + YE++ V +I Sbjct: 123 SSPIARALIGKVSGDIAEVQAPGGIREYEVVDVQYI 158 >gi|187929112|ref|YP_001899599.1| transcription elongation factor GreA [Ralstonia pickettii 12J] gi|187726002|gb|ACD27167.1| transcription elongation factor GreA [Ralstonia pickettii 12J] Length = 158 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E+ ++ A++ID +++ + R+ FGAT+ L + +SG YQIVGD EAD++ G +SIS Sbjct: 64 EIESKLSAAQIIDPASLDAEGRVVFGATIDLEDLDSGKPVTYQIVGDDEADIEIGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 124 SPIARALIGKLEGDVATVVAPGGEREYEVLAVKYL 158 >gi|254465444|ref|ZP_05078855.1| transcription elongation factor GreA [Rhodobacterales bacterium Y4I] gi|206686352|gb|EDZ46834.1| transcription elongation factor GreA [Rhodobacterales bacterium Y4I] Length = 156 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPAGHAALESELKTLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + ++G I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLNG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGE++YEIL++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155 >gi|332974639|gb|EGK11556.1| transcription elongation factor GreA [Kingella kingae ATCC 23330] Length = 186 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/159 (50%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ KIP+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q E Sbjct: 28 IMKKIPLTVHGAERLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIE 87 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELEN ++ A++ID + D +I FGATV+L++ +S ++ YQIVGD EAD++ Sbjct: 88 GRIAELENKLSHAQIIDPKEIHADGKIVFGATVNLMDLDSDEESCYQIVGDDEADIKLFK 147 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIARALIGKE GD+ V AP G + YEIL V +I Sbjct: 148 ISVNSPIARALIGKEEGDVAEVQAPSGIREYEILTVQYI 186 >gi|294085795|ref|YP_003552555.1| transcription elongation factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292665370|gb|ADE40471.1| Transcription elongation factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 167 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 111/155 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++KIP T++G + I++EL + ER +I AI+ AR +GDLSENAEY AA+E Q+ E Sbjct: 5 LMEKIPFTAQGLEAIKEELAHLKGTERQAVINAIAVAREHGDLSENAEYHAARERQSFIE 64 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE + +R+EVID S ++GD++ FG +V + ++ + ++ + IVG EAD+ GLV Sbjct: 65 GRISELEAVTSRSEVIDASQLTGDKVTFGTSVGVADEETDEESIFHIVGPYEADISKGLV 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SSPIAR LIGK +GD + PGG K+YEI+ + Sbjct: 125 STSSPIARGLIGKGIGDSAEIQTPGGTKSYEIISI 159 >gi|16273242|ref|NP_439483.1| transcription elongation factor GreA [Haemophilus influenzae Rd KW20] gi|260581322|ref|ZP_05849138.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] gi|1170015|sp|P43881|GREA_HAEIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd KW20] gi|260091989|gb|EEW75936.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] Length = 158 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID+S M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|121604678|ref|YP_982007.1| transcription elongation factor GreA [Polaromonas naphthalenivorans CJ2] gi|229485903|sp|A1VN58|GREA_POLNA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120593647|gb|ABM37086.1| transcription elongation factor GreA [Polaromonas naphthalenivorans CJ2] Length = 158 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EGR+ Sbjct: 4 LPITKRGAEKLKAELHNLKTVQRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID +T +G R+ FG+TV L ++ +GD YQIVG+ EAD++ GLV+I Sbjct: 64 EIEGKLSAAQVIDPTTFETGTRVVFGSTVKLEDEATGDSVTYQIVGEDEADIKLGLVNIG 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK+ GD V APGG + YEI+ VL+I Sbjct: 124 SPIARALIGKDEGDSAEVQAPGGIRRYEIVTVLYI 158 >gi|260431555|ref|ZP_05785526.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis ITI-1157] gi|260415383|gb|EEX08642.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis ITI-1157] Length = 156 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/156 (50%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG Sbjct: 1 MEKIPMTPAGFAALEAELKQLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEVID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVLSLAEVIDPTKLSG-AIKFGAKVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG ++YE+L + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIHY 155 >gi|261856155|ref|YP_003263438.1| transcription elongation factor GreA [Halothiobacillus neapolitanus c2] gi|261836624|gb|ACX96391.1| transcription elongation factor GreA [Halothiobacillus neapolitanus c2] Length = 158 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/154 (49%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G K++ EL+ + ERPRII+AI+EAR GDL ENAEY AA+E Q EGR+ E Sbjct: 4 PMTAAGAAKLEAELKQLRGVERPRIIQAIAEARDLGDLKENAEYHAAREEQGFVEGRIKE 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A +ID+S + D++ FGATV +++ +S ++ Y+IVGD EAD++S ++S+ S Sbjct: 64 IEAKLSHANIIDVSRLPPSDKVIFGATVRVLDVDSDEEITYKIVGDDEADIKSNMISVHS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARAL+GK LGD ++V+APGG++ +EI +V +I Sbjct: 124 PIARALVGKSLGDEVTVDAPGGKRVFEITEVQYI 157 >gi|146328850|ref|YP_001210068.1| transcription elongation factor GreA [Dichelobacter nodosus VCS1703A] gi|146232320|gb|ABQ13298.1| transcription elongation factor GreA [Dichelobacter nodosus VCS1703A] Length = 160 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KIP+T G + +Q EL + ++RP +I+AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MNQKIPMTKAGAEALQAELEKLKSKDRPAVIQAIAEAREHGDLKENAEYHAAREQQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ +ID++ + D R+ FG T+ L + NSG+ Y+IVG+ EAD++ G+ Sbjct: 61 GRIQEIEFKLSNVNIIDVTRLPQDGRVVFGTTIELEDANSGEIMKYKIVGEDEADIKKGM 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S SSPIARAL GKE GDI+ VN PGG+K+ EI+ V +I Sbjct: 121 ISNSSPIARALFGKEEGDIVDVNVPGGQKSLEIIAVHYI 159 >gi|332283361|ref|YP_004415272.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7] gi|330427314|gb|AEC18648.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7] Length = 158 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+ Sbjct: 4 IPLTARGAERLQAELHRLKTIERPEVINAIAEARAQGDLSENAEYDAARERQAFVEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A++ID ST+ + + FGATV + + SG++ YQIVGD EAD++S L+S+S Sbjct: 64 ELEGTLSNAQIIDPSTLDVEGKAVFGATVEIEDLESGERVKYQIVGDVEADIRSNLISVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIG+ GD++ V AP G + YE+L V ++ Sbjct: 124 SPVARALIGRGQGDVVEVKAPAGIREYEVLNVSYL 158 >gi|134094396|ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage [Herminiimonas arsenicoxydans] gi|133738299|emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Herminiimonas arsenicoxydans] Length = 157 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+ Sbjct: 4 PITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + +++ID +T+ D RI F ATV L + +SGDK YQIVG EAD++ VSI+S Sbjct: 64 LEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARA+IGK +GD+++V AP G + YE+LQV +I Sbjct: 124 PIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157 >gi|332530815|ref|ZP_08406741.1| transcription elongation factor GreA [Hylemonella gracilis ATCC 19624] gi|332039727|gb|EGI76127.1| transcription elongation factor GreA [Hylemonella gracilis ATCC 19624] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 112/154 (72%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY AAK+ Q EGR+ Sbjct: 4 IPITLRGAEKLKTELHRLKTVDRPAVINAIAEARAQGDLSENAEYDAAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + + +G ++ FGATV L ++ +GD YQIVG+ EAD++ GL+++S Sbjct: 64 EIEGKLSAAQVIDPAGLDAGGKVVFGATVELEDEATGDSVTYQIVGEDEADLKQGLINVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD V APGG K YEI+ V + Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVKRYEIVAVSY 157 >gi|82701614|ref|YP_411180.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] gi|82409679|gb|ABB73788.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 109/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G K++ EL + +RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+A Sbjct: 4 IPLTVTGAGKLRAELHEMKTVQRPAVIAAIAEARSHGDLSENAEYEAAKERQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A++ID +T+ D FGAT+ L + S YQIVGD EAD++ G +SIS Sbjct: 64 ELESKLSNAQIIDPATLDADGACVFGATIDLEDVESATTVTYQIVGDDEADIKEGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI+RALIGK GD+ V APGG + YEIL V +I Sbjct: 124 SPISRALIGKYPGDVAEVMAPGGVREYEILDVRYI 158 >gi|242240758|ref|YP_002988939.1| transcription elongation factor GreA [Dickeya dadantii Ech703] gi|242132815|gb|ACS87117.1| transcription elongation factor GreA [Dickeya dadantii Ech703] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K++QEL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLRQELEHLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ MS R+ FGATV+++ +S +++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMSATGRVIFGATVTVLNVDSDEEQTYRIVGDDEADIKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 123 NSPIARGLIGKETDDVVTISTPGGAVEYEILKVEYL 158 >gi|294634505|ref|ZP_06713040.1| transcription elongation factor, cleaves 3 nucleotide of paused mRNA [Edwardsiella tarda ATCC 23685] gi|291092019|gb|EFE24580.1| transcription elongation factor, cleaves 3 nucleotide of paused mRNA [Edwardsiella tarda ATCC 23685] Length = 198 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 41 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 100 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FGATVS+ ++ D++ Y+IVGD EAD + L+ Sbjct: 101 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGATVSVENVDTEDQQTYRIVGDDEADFKHNLI 160 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE G+++++ PGGE YEIL+V ++ Sbjct: 161 SVNSPIARGLIGKEEGEVVTIKTPGGEVEYEILKVEYL 198 >gi|68250001|ref|YP_249113.1| transcription elongation factor GreA [Haemophilus influenzae 86-028NP] gi|145629417|ref|ZP_01785215.1| transcription elongation factor GreA [Haemophilus influenzae 22.1-21] gi|145630776|ref|ZP_01786554.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145634950|ref|ZP_01790657.1| transcription elongation factor GreA [Haemophilus influenzae PittAA] gi|145636182|ref|ZP_01791852.1| transcription elongation factor GreA [Haemophilus influenzae PittHH] gi|145638911|ref|ZP_01794519.1| transcription elongation factor GreA [Haemophilus influenzae PittII] gi|148826011|ref|YP_001290764.1| transcription elongation factor GreA [Haemophilus influenzae PittEE] gi|148826969|ref|YP_001291722.1| transcription elongation factor GreA [Haemophilus influenzae PittGG] gi|229847491|ref|ZP_04467588.1| transcription elongation factor GreA [Haemophilus influenzae 7P49H1] gi|260582445|ref|ZP_05850236.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|319776271|ref|YP_004138759.1| transcription elongation factor [Haemophilus influenzae F3047] gi|68058200|gb|AAX88453.1| transcription elongation factor GreA [Haemophilus influenzae 86-028NP] gi|144978260|gb|EDJ88024.1| transcription elongation factor GreA [Haemophilus influenzae 22.1-21] gi|144983658|gb|EDJ91118.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145267816|gb|EDK07813.1| transcription elongation factor GreA [Haemophilus influenzae PittAA] gi|145270704|gb|EDK10637.1| transcription elongation factor GreA [Haemophilus influenzae PittHH] gi|145271883|gb|EDK11792.1| transcription elongation factor GreA [Haemophilus influenzae PittII] gi|148716171|gb|ABQ98381.1| transcription elongation factor GreA [Haemophilus influenzae PittEE] gi|148718211|gb|ABQ99338.1| transcription elongation factor GreA [Haemophilus influenzae PittGG] gi|229809632|gb|EEP45359.1| transcription elongation factor GreA [Haemophilus influenzae 7P49H1] gi|260094425|gb|EEW78322.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|309750885|gb|ADO80869.1| Transcription elongation factor GreA [Haemophilus influenzae R2866] gi|309973148|gb|ADO96349.1| Transcription elongation factor GreA [Haemophilus influenzae R2846] gi|317450862|emb|CBY87086.1| transcription elongation factor [Haemophilus influenzae F3047] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|171463553|ref|YP_001797666.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193091|gb|ACB44052.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 158 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 109/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPITKRGAELLKEELHRLKHVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A++ID +++ R+ FGATV L + G + YQIVGD EAD+ S +SIS Sbjct: 64 ELEGKLSAAQIIDPASLDITGRVVFGATVDLKDLEDGTRLTYQIVGDDEADIASNKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD+++V APGG + EIL V ++ Sbjct: 124 SPIARALISKEEGDVVAVQAPGGNREVEILAVRYV 158 >gi|217970148|ref|YP_002355382.1| transcription elongation factor GreA [Thauera sp. MZ1T] gi|217507475|gb|ACK54486.1| transcription elongation factor GreA [Thauera sp. MZ1T] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY+AAK+ Q EG Sbjct: 1 MNKTPLTVAGAEKLRTELHRLKTVERPNVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A++ID + + D R FGATV L + SG YQIVGD EAD++ + Sbjct: 61 RIMEVESKLANAQIIDPTLLDADGRCVFGATVELEDLESGQVVTYQIVGDDEADIKDNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GDI V APGG + YEIL V ++ Sbjct: 121 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVRYV 158 >gi|307579424|gb|ADN63393.1| transcription elongation factor GreA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 154 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/153 (50%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISSP Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153 >gi|237748685|ref|ZP_04579165.1| transcription elongation factor protein [Oxalobacter formigenes OXCC13] gi|229380047|gb|EEO30138.1| transcription elongation factor protein [Oxalobacter formigenes OXCC13] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IPVT +G ++ EL+ + ++R +I AI+EAR++GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPVTVRGAQMLRDELQRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE ++ A++ID +T++ + +I F ATVS+ + +GD+ YQIVG+ EAD++ +SI+ Sbjct: 64 ELEGKLSSAQIIDPTTLNTNGKIVFAATVSVEDLETGDRVTYQIVGNDEADLKEFKISIT 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIG+E GD++ VNAP G + YEIL+V++I Sbjct: 124 SPMARALIGREEGDVVEVNAPAGVREYEILEVMFI 158 >gi|95929152|ref|ZP_01311896.1| transcription elongation factor GreA [Desulfuromonas acetoxidans DSM 684] gi|95134650|gb|EAT16305.1| transcription elongation factor GreA [Desulfuromonas acetoxidans DSM 684] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +P+T + + ++Q+EL+ R + +RP++++ I+EAR++GDLSENAEY AAK+ Q E Sbjct: 1 MSDSVPMTPECYARLQEELKNRIKVDRPKVVQDIAEARSHGDLSENAEYDAAKDRQAHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AEL + + RAEVID +++ D+I FGATV+L + +S ++ YQIVG+ EAD++ G + Sbjct: 61 GRIAELNDKLARAEVIDPKSINTDKIVFGATVTLFDTDSDNEVVYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SP+ +ALIG L D + +N P G + YE+ ++ + Sbjct: 121 SVTSPVGKALIGHTLDDEVRINVPSGTRIYEVTEIEY 157 >gi|294670994|ref|ZP_06735850.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307481|gb|EFE48724.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+ Sbjct: 3 KIPLTIRGAELLKNELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKEKQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AE+E+ ++ A +I+ + + + ++ FGAT+ L + +SGD YQIVG+ EAD+++G +S+ Sbjct: 63 AEIEHKLSHAHIINPAEIHAEGKVVFGATLMLEDLDSGDHVRYQIVGEDEADIKAGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD+ V APGG + YEI++V ++ Sbjct: 123 VSPIARALIGKEEGDVAEVQAPGGVREYEIVEVQYV 158 >gi|71082811|ref|YP_265530.1| transcription elongation factor [Candidatus Pelagibacter ubique HTCC1062] gi|91762766|ref|ZP_01264731.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1002] gi|123775546|sp|Q4FPG2|GREA_PELUB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71061924|gb|AAZ20927.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1062] gi|91718568|gb|EAS85218.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1002] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T+ G + +++EL + ++++RP+I+ AISEAR++GDL ENAEY AAKE Q+ NEG Sbjct: 1 MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+ +II RA VID++ MS D ++ FG+TV L ++G+K Y+IVG EAD+Q L+ Sbjct: 61 RITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI R LIGK D++ + P G K +EI V ++ Sbjct: 121 FFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV 158 >gi|301170078|emb|CBW29682.1| transcription elongation factor [Haemophilus influenzae 10810] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEAKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|194365590|ref|YP_002028200.1| transcription elongation factor GreA [Stenotrophomonas maltophilia R551-3] gi|194348394|gb|ACF51517.1| transcription elongation factor GreA [Stenotrophomonas maltophilia R551-3] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 2 RAPITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRI 61 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE ++ AE+ID+S + +G ++ FGA+V+L + + +++ YQIVGD EAD++ GL++I Sbjct: 62 KQLEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEERKYQIVGDLEADIKQGLIAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARA+IGK GD I ++AP G++ YEI+ V ++ Sbjct: 122 SSPVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYL 157 >gi|56478163|ref|YP_159752.1| transcription elongation factor [Aromatoleum aromaticum EbN1] gi|56314206|emb|CAI08851.1| transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 184 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/156 (52%), Positives = 108/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY AAKE Q EGR+ Sbjct: 29 KTPLTVAGAEKLRNELHRLKTVERPSVIAAIAEARSHGDLSENAEYDAAKERQGFVEGRI 88 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E I+ A++ID + D R FGATV L + ++G YQIVGD EAD++ +SI Sbjct: 89 KEIEGKISSAQIIDPKLLDADGRCVFGATVELEDMDTGQTVMYQIVGDDEADLKENKISI 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALIGK GDI V+APGG + YEI+ V ++ Sbjct: 149 SSPIARALIGKFAGDIAEVHAPGGVREYEIIDVRYV 184 >gi|121608129|ref|YP_995936.1| transcription elongation factor GreA [Verminephrobacter eiseniae EF01-2] gi|189042254|sp|A1WH11|GREA_VEREI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|121552769|gb|ABM56918.1| transcription elongation factor GreA [Verminephrobacter eiseniae EF01-2] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 110/154 (71%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++QEL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EGR+ Sbjct: 4 IPITKRGAEKLKQELHHLKTVERPSVITAIAEARAQGDLSENADYDAAKDRQGFVEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL++IS Sbjct: 64 EIEGKLSVAQVIDPGEVDGGGKVVFGATVQLEDEESGDTVTYQIVGEDEADLKQGLINIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE GD V AP G + YE++ V + Sbjct: 124 SPIARALIGKEEGDTAEVQAPSGIRRYEVVAVSY 157 >gi|91788539|ref|YP_549491.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] gi|91697764|gb|ABE44593.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] Length = 158 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T +G +K++ EL + +RP +I +ISEARA GDLSENAEY AAK+ Q EGR+ Sbjct: 4 LPITKRGAEKLKAELHQLKTVDRPWVINSISEARAQGDLSENAEYDAAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID S + +G R+ FG+T+ L ++ SGD YQIVG+ EAD++ G V+I Sbjct: 64 EIEGKLSAAQIIDPSELDAGGRVVFGSTIELQDEESGDTVTYQIVGEDEADIKHGRVNIG 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK+ GD V APGG K YEI+ V++I Sbjct: 124 SPIARALIGKDEGDTAEVQAPGGVKRYEIVAVMYI 158 >gi|117619726|ref|YP_857805.1| transcription elongation factor GreA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561133|gb|ABK38081.1| transcription elongation factor GreA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 158 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNHTPMTVRGAEKLREELEYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VIDI+ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ ++ Sbjct: 61 RIQEIESKLSNAQVIDITKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE+ D+ V P G+ YEIL+V ++ Sbjct: 121 SVNSPIARALIGKEVDDVAIVKTPAGDVEYEILEVAYL 158 >gi|325267980|ref|ZP_08134627.1| transcription elongation factor GreA [Kingella denitrificans ATCC 33394] gi|324980521|gb|EGC16186.1| transcription elongation factor GreA [Kingella denitrificans ATCC 33394] Length = 158 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T G ++++ EL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EGR+ Sbjct: 3 KIPLTVNGAEQLKAELQKLKSVARPAIIEAIAEARSHGDLSENAEYEAAKEKQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELEN + A++I+ + + +I FGATV L++ ++ +K YQIVGD EAD++ +S+ Sbjct: 63 AELENKLAHAQIINPKEIHAEGKIVFGATVQLLDLDTDEKAQYQIVGDDEADIKLFKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GDI V AP G + YEIL+V + Sbjct: 123 NSPIARALIGKEEGDIAEVQAPSGLREYEILKVAYF 158 >gi|319778418|ref|YP_004129331.1| Transcription elongation factor GreA [Taylorella equigenitalis MCE9] gi|317108442|gb|ADU91188.1| Transcription elongation factor GreA [Taylorella equigenitalis MCE9] Length = 158 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G ++ +EL+ + ERP +I+AI+EARA GDLSENAEY AA+E Q E R+ Sbjct: 4 LPLTKAGSIRLTEELQKLKTVERPAVIQAIAEARAQGDLSENAEYDAARERQGFIEARIK 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE +++ +++I+ ST+ +GD+I FGATV L + +SG+ YQIVGD EAD++ +SIS Sbjct: 64 ELEGVLSNSQIIEPSTLEAGDKIVFGATVELEDLDSGELVKYQIVGDAEADIKLNTISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LIGK GD I ++ P GEK YEIL V +I Sbjct: 124 SPVARGLIGKHEGDTIKISVPSGEKEYEILSVEYI 158 >gi|183600357|ref|ZP_02961850.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827] gi|188020148|gb|EDU58188.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827] Length = 158 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVLGADKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ A+VID++ M+ + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIESKLSHAQVIDVTKMTNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D++++ PGG+ +EIL+V +I Sbjct: 123 NSPIARGLIGKEQDDVVTIKTPGGDVEFEILKVEYI 158 >gi|52425016|ref|YP_088153.1| transcription elongation factor GreA [Mannheimia succiniciproducens MBEL55E] gi|52307068|gb|AAU37568.1| GreA protein [Mannheimia succiniciproducens MBEL55E] Length = 158 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + ++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLKQELDFLKTTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ ++ID++ + + ++ FGATV LV + D+ YQIVGD EAD++SGL+S+ Sbjct: 63 QEIESKLSNCQIIDVTKLPNNGKVIFGATVVLVNTENDDEVTYQIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ + +S+ PGG+ ++I++V +I Sbjct: 123 NSPIARGLIGKEVDETVSIVVPGGKVEFDIIEVNYI 158 >gi|88705675|ref|ZP_01103385.1| Transcription elongation factor greA [Congregibacter litoralis KT71] gi|88700188|gb|EAQ97297.1| Transcription elongation factor greA [Congregibacter litoralis KT71] Length = 158 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T++G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+ Sbjct: 3 KVPMTAQGEKALREELEQLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQSFAEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++ + ++ FG TV L+ S D Y+IVGD EAD + L+S+ Sbjct: 63 MDIEGKLSHAQVIDVTAIPPTGKVIFGVTVDLINVESDDTVTYRIVGDDEADAKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GD++ V APGG++ YEI QV I Sbjct: 123 NSPIARALIGKEEGDVVVVRAPGGDREYEIDQVRHI 158 >gi|206889798|ref|YP_002248384.1| transcription elongation factor GreA [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058240|sp|B5YJG9|GREA_THEYD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|206741736|gb|ACI20793.1| transcription elongation factor GreA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 158 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 118/157 (75%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+IP+T +G++K+++EL + ERP IIKAI+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MTDRIPMTPEGYEKLKEELDRLIKIERPAIIKAIAEARAHGDLSENAEYHAAREKQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA VID S ++ +++AFGA V +++ ++ ++K + +VG EADV++G + Sbjct: 61 GRIQELQAKLARAYVIDPSKINQNKVAFGAKVRVIDIDTEEEKEFHLVGPDEADVKNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ +ALIGKE+G+ +++ AP YEI+ + + Sbjct: 121 SITSPVGKALIGKEVGEQVTIKAPAKTFNYEIISISF 157 >gi|329123413|ref|ZP_08251977.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC 11116] gi|327470995|gb|EGF16450.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC 11116] Length = 158 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV N+ ++ Y IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYGIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|251791044|ref|YP_003005765.1| transcription elongation factor GreA [Dickeya zeae Ech1591] gi|247539665|gb|ACT08286.1| transcription elongation factor GreA [Dickeya zeae Ech1591] Length = 158 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNLDTEEEQTYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D++++N PGG YEIL+V+++ Sbjct: 123 NSPIARGLIGKEEDDVVTINTPGGMVEYEILKVVYL 158 >gi|120556264|ref|YP_960615.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8] gi|120326113|gb|ABM20428.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8] Length = 159 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 115/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++P+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ E Sbjct: 1 MADRVPMTKTGEARLREELKKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A+VID++TM ++ FG TV LV + ++ YQIVG+ EAD+++G Sbjct: 61 GRIQEIEGKLSVAQVIDVTTMENTGKVIFGTTVHLVNMETDEEVTYQIVGEDEADIKAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S+SSPIARALIGK GD++++ P G YEI +V +I Sbjct: 121 LSVSSPIARALIGKNEGDVVAIRIPSGTVEYEISEVEYI 159 >gi|319897099|ref|YP_004135294.1| transcription elongation factor [Haemophilus influenzae F3031] gi|317432603|emb|CBY80964.1| transcription elongation factor [Haemophilus influenzae F3031] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLRQELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A+VID++ M + ++ FG TV LV ++ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQVIDVTKMPNNGKVIFGTTVVLVNTDTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|311277845|ref|YP_003940076.1| transcription elongation factor GreA [Enterobacter cloacae SCF1] gi|308747040|gb|ADO46792.1| transcription elongation factor GreA [Enterobacter cloacae SCF1] Length = 158 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGADKLREELEYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDIS M + R+ FG+TV+++ +S ++++Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDISKMPNNGRVIFGSTVTVLNLDSDEEQSYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR L+GKE D++++ PGGE YEI++V ++ Sbjct: 124 SPIARGLVGKEQDDVVTIRTPGGEVEYEIVKVDYL 158 >gi|226329694|ref|ZP_03805212.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198] gi|225202880|gb|EEG85234.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198] Length = 158 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTVLGAEKLREELEYLKNVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M+ + RI FG+TV+L+ + +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMNNNGRIIFGSTVTLLNVENEEEQTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D++ + PGG+ YE+L V +I Sbjct: 121 SVNSPIARGLIGKELDDVVVITTPGGQVEYEVLNVEYI 158 >gi|145633182|ref|ZP_01788913.1| transcription elongation factor GreA [Haemophilus influenzae 3655] gi|144986028|gb|EDJ92618.1| transcription elongation factor GreA [Haemophilus influenzae 3655] Length = 157 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGKEL D +++ PGG ++I++V + Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNY 157 >gi|94500165|ref|ZP_01306699.1| transcription elongation factor GreA [Oceanobacter sp. RED65] gi|94427738|gb|EAT12714.1| transcription elongation factor GreA [Oceanobacter sp. RED65] Length = 158 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++EL ++ ERP++IKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KVPMTVDGEKALREELDQLKKVERPKVIKAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++T+ ++ FG TV L++ N+ ++K YQIVG+ EAD+ +G +S Sbjct: 63 QDIEGKLSNAQVIDVTTLPQTGKVIFGTTVRLIDANTDEEKQYQIVGEDEADIPNGKISA 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD++ V P GE YEI QVL++ Sbjct: 123 GSPIARALIGKEEGDVVVVKVPNGEIEYEIDQVLYL 158 >gi|237808999|ref|YP_002893439.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187] gi|237501260|gb|ACQ93853.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187] Length = 158 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T G +K+++EL + + +RP+II+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNQTPMTVLGAEKLREELEYLKTVQRPQIIQAIAEARAHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E +++A++ID++ + + R+ FGATV++++ ++ ++ Y+IVGD E+D++SGL+ Sbjct: 61 RIQEVEAKLSKAQIIDVTKLPKNGRVIFGATVTVLKCDTEEEITYRIVGDDESDIKSGLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR LIGKE+ D+ ++ P G+ +EI+QV +I Sbjct: 121 SINSPIARGLIGKEVDDVATITTPAGKVDFEIVQVEYI 158 >gi|229845154|ref|ZP_04465289.1| transcription elongation factor GreA [Haemophilus influenzae 6P18H1] gi|229811990|gb|EEP47684.1| transcription elongation factor GreA [Haemophilus influenzae 6P18H1] Length = 158 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTDTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|34499256|ref|NP_903471.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] gi|34105107|gb|AAQ61463.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] Length = 158 Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EGR+ Sbjct: 3 KVPLTVRGAELLKEELQRLKSVERPSVIEAIAEARSHGDLSENAEYDAAKERQAFVEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE ++ A +I+ + + D R+ FGATV L++ + + YQIVGD EAD++ VS+ Sbjct: 63 AELEGKLSNAVIINPAELDADGRVVFGATVDLMDLETEESVTYQIVGDDEADIKVCKVSV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPI+RALIGKE GD+ V APGG + YE+L V +I Sbjct: 123 NSPISRALIGKEAGDVAEVVAPGGIREYEVLDVKYI 158 >gi|261867705|ref|YP_003255627.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D11S-1] gi|293392110|ref|ZP_06636444.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413037|gb|ACX82408.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952644|gb|EFE02763.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++VID++ + + ++ FGATV L+ N+ ++ +Y+IVGD EAD+++GL+S+ Sbjct: 63 QEIEGKLANSQVIDVTKIPNNGKVIFGATVVLLNTNTDEEVSYRIVGDDEADIKNGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D+++++ PGG +EI++V ++ Sbjct: 123 NSPIARGLVGKEVDDVVNISTPGGTVEFEIIEVDYV 158 >gi|238787585|ref|ZP_04631383.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC 33641] gi|238724372|gb|EEQ16014.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC 33641] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILHVDYV 158 >gi|158522232|ref|YP_001530102.1| transcription elongation factor GreA [Desulfococcus oleovorans Hxd3] gi|158511058|gb|ABW68025.1| transcription elongation factor GreA [Desulfococcus oleovorans Hxd3] Length = 164 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 114/155 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +V+ IP+T +G++K+ QEL + ERP I+AI EARA+GDLSENAE+ AAKE Q E Sbjct: 9 VVETIPITRQGYEKLNQELSRLKAVERPANIRAIEEARAHGDLSENAEFHAAKEKQGFIE 68 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ +LE+ + A +ID ST++ DR FG T+ L ++GD+ YQ+VG E+++ +GL+ Sbjct: 69 GRINDLEHKLASANIIDPSTLTKDRAVFGCTIRLESIDTGDEVEYQLVGPDESNIDNGLI 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S++SP+ +A++GK GD + + APGG+++YE++++ Sbjct: 129 SVTSPLGKAILGKVPGDEVVLQAPGGKRSYELIEI 163 >gi|329118200|ref|ZP_08246910.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC BAA-1200] gi|327465621|gb|EGF11896.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC BAA-1200] Length = 207 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+ Sbjct: 52 KIPLTIRGAELLKSELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKERQGFIEGRI 111 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AE+E+ ++ A VI+ + + + ++ FGAT+ L + +SG+ YQIVG+ EAD+++G +S+ Sbjct: 112 AEIEHKLSHAHVINPAEIHAEGKVVFGATLDLEDLDSGEHVRYQIVGEDEADIKAGKISV 171 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD+ V APGG + YEI+ V ++ Sbjct: 172 GSPIARALIGKEEGDVAEVQAPGGVREYEIVAVEYV 207 >gi|148358641|ref|YP_001249848.1| transcription elongation factor GreA [Legionella pneumophila str. Corby] gi|166200670|sp|A5IAV2|GREA_LEGPC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148280414|gb|ABQ54502.1| transcription elongation factor GreA [Legionella pneumophila str. Corby] Length = 160 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKHPMTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPIARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158 >gi|212709999|ref|ZP_03318127.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM 30120] gi|212687408|gb|EEB46936.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM 30120] Length = 158 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVFGANKLREELEYLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ ++VID++ M+ + R+ FGATVS++ ++ ++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIESKLSHSQVIDVTKMANNGRVIFGATVSVLNVDTDEELTYRIVGDDEADIKVNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D++++ PGG+ +EIL+V +I Sbjct: 123 NSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158 >gi|329910107|ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] gi|327546260|gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] Length = 158 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 110/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G +++EL + +ERP II AISEARA GDLSENAEY AAKE Q+ EGR++ Sbjct: 4 VPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEGRIS 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + +++ID T+ D RI FG+TV L + +GDK YQIVG EAD++ VS++ Sbjct: 64 DLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKVSVT 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD++ V AP G + YE+L+V +I Sbjct: 124 SPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158 >gi|254448859|ref|ZP_05062315.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015] gi|198261549|gb|EDY85838.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015] Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK+P+T +G + +++EL + +ERP II+AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MTDKVPMTVEGAEAMREELTQLKSKERPEIIQAIAEAREHGDLKENAEYHAARERQGFVE 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A++ID+ ++ ++ FG TV L + ++ ++K Y+IVG+ EA++Q G Sbjct: 61 GRIKEIEGKLSYAQIIDVQSLPKSGKVVFGVTVELCDIDTEEEKTYKIVGEDEANIQQGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SP+AR+LIG+E GD + V PGG+ YEIL V + Sbjct: 121 ISFTSPVARSLIGREEGDCVLVKTPGGDHEYEILAVRY 158 >gi|290473438|ref|YP_003466305.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus bovienii SS-2004] gi|289172738|emb|CBJ79509.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus bovienii SS-2004] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + RP+II AI++ARA+GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELENLKNVRRPKIITAIADARAHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV+++ S +++ Y+IVGD EA+++ L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMINNGRVIFGATVTVLNMGSDEEQTYRIVGDDEANIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D+ ++ PGG+ YE+L V ++ Sbjct: 123 NSPIARGLIGKEVDDVAVISTPGGKVEYEVLNVEYL 158 >gi|15616988|ref|NP_240201.1| transcription elongation factor GreA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681740|ref|YP_002468126.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682295|ref|YP_002468679.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471441|ref|ZP_05635440.1| transcription elongation factor GreA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386814|sp|P57464|GREA_BUCAI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799549|sp|B8D9G7|GREA_BUCA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799550|sp|B8D7R9|GREA_BUCAT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25321409|pir||G84974 transcription elongation factor greA [imported] - Buchnera sp. (strain APS) gi|10039053|dbj|BAB13087.1| transcription elongation factor greA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622028|gb|ACL30184.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624583|gb|ACL30738.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086121|gb|ADP66203.1| transcription elongation factor GreA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086694|gb|ADP66775.1| transcription elongation factor GreA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087279|gb|ADP67359.1| transcription elongation factor GreA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087791|gb|ADP67870.1| transcription elongation factor GreA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 159 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++ IP+T +G +K+++EL+ + RPRII AI+EAR +GDL ENAEY +A+E Q+ E Sbjct: 1 MINLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ +++ID++ +S + R+ FG+TVS++ + +K Y+IVGD E+D + L Sbjct: 61 GRIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR LIGKE+ D++ + PGG+ Y+IL++ +I Sbjct: 121 ISINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159 >gi|238020364|ref|ZP_04600790.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147] gi|237867344|gb|EEP68350.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147] Length = 158 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KIP+T G +K++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q EGR+ Sbjct: 3 KIPLTVAGAEKLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE+ ++ A++ID + + +I FGATV++ + + ++ YQIVGD EAD++ G +S+ Sbjct: 63 AELESKLSHAQIIDPKEIHAEGKIVFGATVTVSDLETDEEATYQIVGDDEADIKIGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARA+IGKE GD+ V AP G + Y+IL V +I Sbjct: 123 NSPIARAMIGKEEGDVAEVQAPSGVREYDILNVQYI 158 >gi|284006659|emb|CBA71921.1| transcription elongation factor [Arsenophonus nasoniae] Length = 179 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ +IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q E Sbjct: 21 LMKQIPMTVRGAEKLRKELEFLKNIRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCE 80 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A+VID++ M + R+ FGATV++ + + + Y+IVGD EAD++ L Sbjct: 81 GRIQEIEAKLSHAQVIDVTKMKNEGRVIFGATVTVFNVTTNEDQIYRIVGDDEADIKENL 140 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK + D+ + PGGE YEIL+V +I Sbjct: 141 ISVNSPIARGLIGKTMDDVAVITTPGGEVEYEILKVEYI 179 >gi|238750117|ref|ZP_04611620.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380] gi|238711661|gb|EEQ03876.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380] Length = 158 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVGGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDIS M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDISKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL+V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILKVDYV 158 >gi|260596192|ref|YP_003208763.1| transcription elongation factor GreA [Cronobacter turicensis z3032] gi|260215369|emb|CBA27383.1| Transcription elongation factor greA [Cronobacter turicensis z3032] Length = 158 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 116/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR L+GKEL D++++N PGG+ +EI++V ++ Sbjct: 124 SPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158 >gi|52842830|ref|YP_096629.1| transcription elongation factor GreA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295463|ref|YP_127878.1| transcription elongation factor GreA [Legionella pneumophila str. Lens] gi|54298613|ref|YP_124982.1| transcription elongation factor GreA [Legionella pneumophila str. Paris] gi|81367742|sp|Q5WTH5|GREA_LEGPL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81369784|sp|Q5X1R6|GREA_LEGPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81376728|sp|Q5ZS95|GREA_LEGPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|52629941|gb|AAU28682.1| transcription elongation factor GreA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752398|emb|CAH13830.1| transcription elongation factor GreA [Legionella pneumophila str. Paris] gi|53755295|emb|CAH16789.1| transcription elongation factor GreA [Legionella pneumophila str. Lens] Length = 160 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPIARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158 >gi|149375765|ref|ZP_01893533.1| Transcription elongation factor [Marinobacter algicola DG893] gi|149359890|gb|EDM48346.1| Transcription elongation factor [Marinobacter algicola DG893] Length = 159 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/159 (47%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++P+T G ++++EL+ + E+RPR+I AIS+AR +GDL ENAEY AA+E Q+ E Sbjct: 1 MADRVPMTKAGEIRLREELQKLKSEDRPRVIAAISDAREHGDLKENAEYHAAREQQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A+VID++T+ ++ FG TV L+ ++ ++ +YQIVG+ EAD+++G Sbjct: 61 GRIQEIEGKLSAAQVIDVNTIENTGKVIFGTTVQLLNVDTDEQVSYQIVGEDEADIKAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARAL+GK GD+++V P G YEI QV I Sbjct: 121 LSISSPIARALVGKSEGDVVAVRVPSGTVEYEIEQVEHI 159 >gi|152979122|ref|YP_001344751.1| transcription elongation factor GreA [Actinobacillus succinogenes 130Z] gi|150840845|gb|ABR74816.1| transcription elongation factor GreA [Actinobacillus succinogenes 130Z] Length = 158 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ ++ID++ + + ++ FG+TV LV ++ D+ YQIVGD EAD+++GL+S+ Sbjct: 63 QEIESKLSNGQIIDVTKIPNNGKVIFGSTVVLVNVDTDDEATYQIVGDDEADIKAGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D +++ PGG ++I++V +I Sbjct: 123 NSPIARGLIGKEVDDTVNIVTPGGTVEFDIIEVNYI 158 >gi|156935703|ref|YP_001439619.1| transcription elongation factor GreA [Cronobacter sakazakii ATCC BAA-894] gi|156533957|gb|ABU78783.1| hypothetical protein ESA_03572 [Cronobacter sakazakii ATCC BAA-894] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELEFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ ++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEELTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR L+GKEL D++++N PGG+ +EI++V ++ Sbjct: 124 SPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158 >gi|268592834|ref|ZP_06127055.1| transcription elongation factor GreA [Providencia rettgeri DSM 1131] gi|291311620|gb|EFE52073.1| transcription elongation factor GreA [Providencia rettgeri DSM 1131] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G DK+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVLGADKLREELEFLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIEGKLSHAQVIDVTKMVNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ +EIL+V +I Sbjct: 123 NSPIARGLVGKEVDDAVSIKTPGGDVEFEILKVEYI 158 >gi|198282924|ref|YP_002219245.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665891|ref|YP_002425127.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247445|gb|ACH83038.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518104|gb|ACK78690.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DKIP+T G +++ EL + +RP +I+AI+EARA GDLSENAEY AAKE Q E Sbjct: 1 MNDKIPMTVIGAQRLRDELHRLKTVDRPTVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ + RA+VID + +G +I F ATV L E G++ YQIVGD EAD++ Sbjct: 61 GRIREVEDYLARAQVIDPKQLNTGGKIVFAATVEL-EDAEGNEVTYQIVGDAEADLKENK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARALIGK GD + V APGG + Y IL V +I Sbjct: 120 ISISSPIARALIGKHEGDPVEVRAPGGTREYTILAVRYI 158 >gi|119897674|ref|YP_932887.1| putative transcription elongation factor [Azoarcus sp. BH72] gi|119670087|emb|CAL94000.1| putative transcription elongation factor [Azoarcus sp. BH72] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNKTPLTIAGAEKLRLELHRLKTVDRPNVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E + A++ID + + D R FGATV L + +SG YQIVG+ EAD++ + Sbjct: 61 RIAEVEGKLANAQIIDPTLLDADGRCVFGATVELEDMDSGQVVTYQIVGEDEADIKEFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GDI V APGG + YEI+ V +I Sbjct: 121 SVSSPIARALIGKYAGDIAEVQAPGGIREYEIIDVRYI 158 >gi|307824612|ref|ZP_07654836.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] gi|307734266|gb|EFO05119.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG +K++ EL + RPRI+ +I+ ARA+GDL ENAEY AAKE Q+ EG Sbjct: 1 MNKVPLTVKGAEKLRAELEELKSVVRPRIVASIATARAHGDLKENAEYHAAKEQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++E+E ++ A++IDI+ + + ++ FGATV + + S K YQIVG+ EA+++ G + Sbjct: 61 RISEIEGKLSNAQIIDITKVDANGKVVFGATVEIEDIESERKVTYQIVGEDEANIKEGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGKE+ D+++V APGG YEI+ + +I Sbjct: 121 SIGSPIARALIGKEVEDVVTVKAPGGNVDYEIISIEYI 158 >gi|332290209|ref|YP_004421061.1| transcription elongation factor GreA [Gallibacterium anatis UMN179] gi|330433105|gb|AEC18164.1| transcription elongation factor GreA [Gallibacterium anatis UMN179] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGANLLREELDYLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A++ID++ ++ + R+ FGATV LV + D+ YQIVGD EAD++ GL+S+ Sbjct: 63 QEIEGKLSNAQIIDVTKITNNGRVIFGATVVLVNVETDDEVTYQIVGDDEADIKQGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGKE+ D +++ PGG+ ++I+ V + Sbjct: 123 NSPIARGLIGKEVDDNVTITTPGGKVEFDIISVEY 157 >gi|162451868|ref|YP_001614235.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce 56'] gi|161162450|emb|CAN93755.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce 56'] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+P+T +G ++++E+R ++ + P+++K I AR +GDLSENAEY AAKE Q + Sbjct: 1 MSEKVPMTPEGQARLREEMRRLKEIDLPQVVKDIGTAREHGDLSENAEYHAAKERQGMIV 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE ++RAEVID S +SG ++ FGA V L ++ +++++QIVG +EAD++ G + Sbjct: 61 ARISYLEQTLSRAEVIDPSKLSGSKVQFGAKVKLANVDTDEEQSFQIVGPEEADLKVGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARAL+G E+G+ + VN P G +TYEIL+V + Sbjct: 121 SIASPLARALLGHEVGEEVRVNMPAGPRTYEILEVSY 157 >gi|315634153|ref|ZP_07889442.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC 33393] gi|315477403|gb|EFU68146.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC 33393] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++VID++ + + ++ FGATV L N+ ++ Y+IVGD EAD+++GL+S+ Sbjct: 63 QEIEGKLGNSQVIDVTKIPNNGKVIFGATVVLFNTNTDEEVTYRIVGDDEADIKNGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D++++ PGG +EI++V ++ Sbjct: 123 NSPIARGLVGKEVDDVVNITTPGGVVEFEIIEVEYV 158 >gi|296104892|ref|YP_003615038.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059351|gb|ADF64089.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++++ PGGE YEI++V ++ Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158 >gi|189184202|ref|YP_001937987.1| GreA protein [Orientia tsutsugamushi str. Ikeda] gi|238692019|sp|B3CTQ6|GREA_ORITI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189180973|dbj|BAG40753.1| GreA protein [Orientia tsutsugamushi str. Ikeda] Length = 159 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/155 (49%), Positives = 113/155 (72%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ ++ Sbjct: 3 RFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDKKI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN + AEVI+I+ ++ + + FGA V L+++++ + YQIVG+ EAD+ L+SI+ Sbjct: 63 YDLENKLANAEVIEITKINSNSVKFGARVVLLDRDTEKEVVYQIVGEYEADITQNLISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIA+ALIGK+ GDII V P G + YE+L+V ++ Sbjct: 123 SPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157 >gi|261345170|ref|ZP_05972814.1| transcription elongation factor GreA [Providencia rustigianii DSM 4541] gi|282566862|gb|EFB72397.1| transcription elongation factor GreA [Providencia rustigianii DSM 4541] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVFGANKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ ++VIDI+ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+ Sbjct: 63 QEIESKLSHSQVIDITKMVNNGRVIFGATVTVLNLDTDEELTYRIVGDDEADIKVNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D++++ PGG+ +EIL+V +I Sbjct: 123 NSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158 >gi|297180938|gb|ADI17141.1| transcription elongation factor [uncultured gamma proteobacterium HF0070_08D07] Length = 157 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 75/152 (49%), Positives = 113/152 (74%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G + ++ EL R+ E R I+K I+EARA+GDL ENAEY AA+E Q+LNEGR+ Sbjct: 3 IPMTVHGAESLRAELAERKGEIRQSIVKDIAEARAHGDLKENAEYHAAREQQSLNEGRIQ 62 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E+ + A++ID++ + ++ FGATV++ ++ S D+ YQIVG+ EAD++ G +S+ Sbjct: 63 DIESKLADAQIIDVTKIPATGKVVFGATVTIADEESDDETTYQIVGEDEADLKFGKISVL 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI+RALIGK+ GD+ SVN+P G K YEI++V Sbjct: 123 SPISRALIGKDTGDVASVNSPSGVKDYEIIKV 154 >gi|319787362|ref|YP_004146837.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis 11-1] gi|317465874|gb|ADV27606.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis 11-1] Length = 154 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG ++++EL + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+ +L Sbjct: 1 MTLKGAQRLREELDHLKTVKRPEVIAAIAEARGHGDLKENAEYHAAREQQGFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ A++ID++ + +G ++ FGATV+L + + ++ YQIVGD EAD++ GL++ISSP Sbjct: 61 ESELSHADLIDVTKLNAGSKVVFGATVTLADVETDEEVRYQIVGDLEADIKQGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGKE GD I ++AP G++ YEI+ V ++ Sbjct: 121 VARALIGKEEGDAIVIDAPAGQREYEIVSVEYL 153 >gi|58584571|ref|YP_198144.1| transcription elongation factor, GreA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418887|gb|AAW70902.1| Transcription elongation factor, GreA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 164 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K P+T +GF+ IQ EL + +EE+P II+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IIKKFPITREGFEHIQAELE-KLKEEKPSIIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQS 117 GR+ ELEN ++ AE+I++ +SGD + FGATV+L N D + Y+IVG+ EADV Sbjct: 64 GRIMELENKLSHAEIIEVKNLSGDSVMFGATVTLSMLNDDDSEVEYIYKIVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPSGEKLYKIVKIEF 163 >gi|145298034|ref|YP_001140875.1| transcription elongation factor [Aeromonas salmonicida subsp. salmonicida A449] gi|142850806|gb|ABO89127.1| transcription elongation factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 158 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNHTPMTVRGAEKLREELDYLKSELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VID++ ++ + R+ FGATV+L++ + ++ Y+IVGD E+D++ ++ Sbjct: 61 RIQEIESKLSNAQVIDVTKIANNGRVIFGATVTLLKSETEEEVVYRIVGDDESDIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE+ D++ V P G+ YEIL V ++ Sbjct: 121 SVNSPIARALIGKEVDDVVIVKTPAGDVEYEILAVAYL 158 >gi|317050953|ref|YP_004112069.1| transcription elongation factor GreA [Desulfurispirillum indicum S5] gi|316946037|gb|ADU65513.1| transcription elongation factor GreA [Desulfurispirillum indicum S5] Length = 156 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/154 (47%), Positives = 113/154 (73%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T G + +++EL ++ ER ++ + I+ ARA+GDL ENAEY AA+E Q+ EG Sbjct: 1 MDRIPMTKTGLENLRKELEHLKKNERHQVKEEIAVARAHGDLKENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + RAEVID ST++ D++ FG+ V+L+ + + Y +VGD EAD +S L++ Sbjct: 61 RIAELEDKVLRAEVIDPSTLASDKVLFGSQVTLLNLETDSEVVYTVVGDDEADYKSNLIA 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SSP+A++LIGK +GD + VNAP G YEIL++ Sbjct: 121 VSSPLAQSLIGKRVGDEVVVNAPKGAVEYEILKI 154 >gi|295097667|emb|CBK86757.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 158 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDNDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++++ PGGE YEI++V ++ Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158 >gi|152972105|ref|YP_001337251.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896688|ref|YP_002921433.1| transcription elongation factor GreA [Klebsiella pneumoniae NTUH-K2044] gi|262042740|ref|ZP_06015894.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997717|ref|ZP_08302900.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3] gi|150956954|gb|ABR78984.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549015|dbj|BAH65366.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039965|gb|EEW41082.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538926|gb|EGF64984.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3] Length = 158 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++++ PGGE YEI +V ++ Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158 >gi|189425137|ref|YP_001952314.1| transcription elongation factor GreA [Geobacter lovleyi SZ] gi|238692107|sp|B3E3H5|GREA_GEOLS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189421396|gb|ACD95794.1| transcription elongation factor GreA [Geobacter lovleyi SZ] Length = 158 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 112/157 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + IP+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSNNIPLTKESYEALQEELKRLIREERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D++ + D++ FGATV+L + S ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIEIKY 157 >gi|300721528|ref|YP_003710803.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus nematophila ATCC 19061] gi|297628020|emb|CBJ88569.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus nematophila ATCC 19061] Length = 158 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + RP+II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELEHLRNVRRPQIITAIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EA+++ L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMTNNGRVIFGATVTVLNVDSDEEQTYRIVGDDEANIKENLLSV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D + + PGG+ YE+L V ++ Sbjct: 123 NSPIARGLIGKEVDDAVVIATPGGQVEYEVLNVDYL 158 >gi|85373967|ref|YP_458029.1| transcription elongation factor GreA [Erythrobacter litoralis HTCC2594] gi|84787050|gb|ABC63232.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] Length = 155 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ + E RP+++ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MEKVPMLAEGYERLTADLKALRAE-RPKVVDAIEEARAHGDLSENAEYHAAKERQGQIEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A++E+ +TRA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD G +S Sbjct: 60 QIADIEDRVTRAQIIDPATLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAAKGRIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPI RALIGK++GD I V P G+K Y + +V ++ Sbjct: 119 YSSPIGRALIGKQVGDEIEVTVPSGDKFYLVDKVEFV 155 >gi|78222984|ref|YP_384731.1| transcription elongation factor GreA [Geobacter metallireducens GS-15] gi|78194239|gb|ABB32006.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 159 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + +D +Q+EL+ +EERPR+I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSYSVPMTKESYDSLQEELKRLIREERPRVIQDIAEARSHGDLSENAEYDAAKNRQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D+S + D++ FGATV+L + S ++ Y+IVG++EAD++ G + Sbjct: 61 GRIQELQGKLARAHVVDLSGLKPDKVVFGATVTLYDTTSEEEVTYKIVGEEEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 S +SP+ +ALIG +L D + + P G K YEI+ + +I Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGSVKEYEIIDIKYI 159 >gi|296284018|ref|ZP_06862016.1| transcription elongation factor GreA [Citromicrobium bathyomarinum JL354] Length = 155 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 119/157 (75%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ + E RP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MEKVPMLAEGYERLTTDLKALRAE-RPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ +TRA++ID ST+SGD++ FGATV+L++++ K YQIVG EAD +S +S Sbjct: 60 QIAEIEDRVTRAQIIDPSTLSGDKVVFGATVTLLDEDDKPIK-YQIVGQTEADAKSARIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ARALIGK++G+ + V P G+K Y + ++ +I Sbjct: 119 YNSPLARALIGKKVGEEVEVTVPSGDKFYLVDKIEFI 155 >gi|161506138|ref|YP_001573250.1| transcription elongation factor GreA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867485|gb|ABX24108.1| hypothetical protein SARI_04326 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 158 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMANNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158 >gi|71906579|ref|YP_284166.1| transcription elongation factor GreA [Dechloromonas aromatica RCB] gi|71846200|gb|AAZ45696.1| GreA/GreB family elongation factor [Dechloromonas aromatica RCB] Length = 172 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +K+++EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 15 MSKVPLTVAGAEKLREELHRLKTVDRPWVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 74 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + D R FGATV + +++SG YQIVG+ EAD+++G + Sbjct: 75 RIQEVEGKLSNAQIIDPKLLDADGRCVFGATVQMEDQDSGAGATYQIVGEDEADIKAGKI 134 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SP+ARALIGK GDI V APGG + YEI+ V + Sbjct: 135 SVNSPMARALIGKYAGDIAQVQAPGGIREYEIIDVRY 171 >gi|330830899|ref|YP_004393851.1| transcription elongation factor GreA [Aeromonas veronii B565] gi|328806035|gb|AEB51234.1| transcription elongation factor GreA [Aeromonas veronii B565] Length = 153 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/153 (47%), Positives = 115/153 (75%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EGR+ E+ Sbjct: 1 MTVRGAEKLREELDYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ L+S++SP Sbjct: 61 EAKLSNAQVIDVTKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKE+ D+ V P G+ YE+L+V +I Sbjct: 121 IARALIGKEVDDVAIVKTPAGDVEYEVLEVAYI 153 >gi|254456594|ref|ZP_05070023.1| transcription elongation factor [Candidatus Pelagibacter sp. HTCC7211] gi|207083596|gb|EDZ61022.1| transcription elongation factor [Candidatus Pelagibacter sp. HTCC7211] Length = 158 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T G +K+++EL + ++++RP I+ AI+EAR++GDL ENAEY AAKE Q+ NEG Sbjct: 1 MDKEPITLNGLNKLKEELIFLKEKKRPEIVAAIAEARSHGDLKENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+++II RA VID++ ++ D ++ FG+TV L ++G+K +Y+IVG EAD++ L+ Sbjct: 61 RITEIDDIIARANVIDVTKLNNDGKVIFGSTVFLENLDNGEKISYKIVGKDEADLKQKLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI R LIGK D++ + P G K +EI V +I Sbjct: 121 FFQSPIGRGLIGKNKNDLVEITTPAGIKNFEIKDVQYI 158 >gi|300310712|ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gi|124483342|emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum seropedicae] gi|300073497|gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/155 (48%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T +G + +++EL + ++RP +I AI+EARA GDLSENAEY++AKE Q EGR+A Sbjct: 4 VPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + A+++D + ++ + R+ F +TV L +SG+K YQIVG EAD++ VS++ Sbjct: 64 DLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVT 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGK GD+++V AP G K YEIL+V ++ Sbjct: 124 SPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 >gi|254522230|ref|ZP_05134285.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14] gi|219719821|gb|EED38346.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14] Length = 152 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +LE Sbjct: 2 KGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQLEGE 61 Query: 70 ITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ AE+ID+S + +G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISSP+AR Sbjct: 62 LSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKLGLIAISSPVAR 121 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158 A+IGK GD I ++AP G++ YEI+ V ++ Sbjct: 122 AMIGKLEGDSIVIDAPAGQREYEIVSVSYV 151 >gi|170695455|ref|ZP_02886600.1| transcription elongation factor GreA [Burkholderia graminis C4D1M] gi|170139646|gb|EDT07829.1| transcription elongation factor GreA [Burkholderia graminis C4D1M] Length = 141 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/134 (59%), Positives = 99/134 (73%), Gaps = 1/134 (0%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD- 84 ERP +I +I+EARA GDLSENAEY AAKE Q EGR+AE+E+ + A+VID S + D Sbjct: 8 ERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIAEIESKLAGAQVIDPSQVEADG 67 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R+ FGATV L + +SG YQIVGD EAD+ GL+SISSPIARALIGK GD+ SV AP Sbjct: 68 RVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISISSPIARALIGKSEGDVASVQAP 127 Query: 145 GGEKTYEILQVLWI 158 GG + YEI+ V ++ Sbjct: 128 GGVREYEIIAVSYV 141 >gi|145589200|ref|YP_001155797.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047606|gb|ABP34233.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 158 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EGR+ Sbjct: 4 IPITKRGAELLKEELHRLKHIERPAVIIAISEARAQGDLSENAEYDAAKEKQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A+VID +++ + FGATV L + G K YQIVGD EAD+ +SIS Sbjct: 64 ELESKLSAAQVIDPASLDVTGLVVFGATVDLEDLEDGTKLTYQIVGDDEADIALNKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD+++V+AP G + EIL V +I Sbjct: 124 SPIARALISKEEGDVVAVHAPAGNREVEILAVRYI 158 >gi|39996379|ref|NP_952330.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA] gi|39983259|gb|AAR34653.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA] gi|298505389|gb|ADI84112.1| transcription elongation factor GreA [Geobacter sulfurreducens KN400] Length = 158 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 111/158 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T + ++ +Q+EL+ +EERPR+I+ I+EAR +GDLSENAEY AAK Q E Sbjct: 1 MSHTIPMTKESYEALQEELKRLIREERPRVIQDIAEARGHGDLSENAEYDAAKNRQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D++ M D++ FGATV+L + + ++ Y+IVG++EAD++ G + Sbjct: 61 GRILELQGKLARAYVVDLTGMKPDKVVFGATVTLYDTATEEEVTYKIVGEEEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SP+ +ALIG +L D + + P G K YEI+ + ++ Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGLKEYEIIDIKYV 158 >gi|85058346|ref|YP_454048.1| transcription elongation factor [Sodalis glossinidius str. 'morsitans'] gi|84778866|dbj|BAE73643.1| transcription elongation factor [Sodalis glossinidius str. 'morsitans'] Length = 158 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP II +I+EAR GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLCGAEKLREELEYLKSIRRPEIILSIAEAREQGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ ++ R+ FGATVS+ +S +K+ ++IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKLAPSGRVIFGATVSVENLDSEEKQTFRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR L+GKE GDI+ + PGGE YEIL+V ++ Sbjct: 121 SINSPIARGLVGKEEGDIVVIKTPGGEVEYEILKVEYL 158 >gi|148284685|ref|YP_001248775.1| transcription elongation factor [Orientia tsutsugamushi str. Boryong] gi|229485768|sp|A5CE64|GREA_ORITB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146740124|emb|CAM80312.1| transcription elongation factor [Orientia tsutsugamushi str. Boryong] Length = 159 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/155 (49%), Positives = 112/155 (72%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ ++ Sbjct: 3 RFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDKKI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN + AEVI+I+ ++ + + FGA V L++ ++ + YQIVG+ EAD+ L+SI+ Sbjct: 63 YDLENKLANAEVIEITKINSNSVKFGARVVLLDLDTEKEVVYQIVGEYEADITQNLISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIA+ALIGK+ GDII V P G + YE+L+V ++ Sbjct: 123 SPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157 >gi|319942670|ref|ZP_08016977.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B] gi|319803753|gb|EFW00688.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B] Length = 158 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T+ G K++ EL + ++ RP ++ AI+EAR GDLSENAEY AA+E Q EG Sbjct: 1 MNRIPITAAGAAKLKAELDYLKKTARPNVVAAIAEAREKGDLSENAEYDAAREEQGHIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE I +VID T++ GDRI FGATV+L ++ YQIVGD EAD++ L+ Sbjct: 61 RIAELEGKIPALQVIDPKTVAAGDRIVFGATVTLYDEEEDSNVTYQIVGDDEADIKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIARALIGK GD + AP G+ T+E+ V + Sbjct: 121 SVSSPIARALIGKSEGDTVVFMAPKGKVTFEVETVEY 157 >gi|332306411|ref|YP_004434262.1| transcription elongation factor GreA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173740|gb|AEE22994.1| transcription elongation factor GreA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 158 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+KG D +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EGR+ + Sbjct: 5 PMTAKGADMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A++ID++ M + ++ FG TV+++ S D+ Y+IVGD EAD+++ L+S+SS Sbjct: 65 IEGKLSNAQIIDVTKMPNNGKVIFGTTVTILNLESDDEITYKIVGDDEADIKNNLISVSS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIAR LIGK+L D++++ P G +EI++V ++ Sbjct: 125 PIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158 >gi|16762061|ref|NP_457678.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766595|ref|NP_462210.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143550|ref|NP_806892.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415228|ref|YP_152303.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181807|ref|YP_218224.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616306|ref|YP_001590271.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552055|ref|ZP_02345808.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995305|ref|ZP_02576395.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231907|ref|ZP_02656965.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237998|ref|ZP_02663056.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243132|ref|ZP_02668064.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262691|ref|ZP_02684664.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463479|ref|ZP_02697396.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819635|ref|ZP_02831635.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442444|ref|YP_002042555.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451049|ref|YP_002047327.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472290|ref|ZP_03078274.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737942|ref|YP_002116247.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248717|ref|YP_002148223.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262177|ref|ZP_03162251.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364158|ref|YP_002143795.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244973|ref|YP_002217271.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388684|ref|ZP_03215296.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931178|ref|ZP_03221972.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354200|ref|YP_002228001.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858547|ref|YP_002245198.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425423|ref|ZP_03358173.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646994|ref|ZP_03377047.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224585094|ref|YP_002638893.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910092|ref|ZP_04653929.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825810|ref|ZP_06544978.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037219|sp|P64282|GREA_SALTI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041329|sp|P64281|GREA_SALTY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25321438|pir||AB0903 transcription elongation factor STY3477 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421857|gb|AAL22169.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504364|emb|CAD07816.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29139185|gb|AAO70752.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129485|gb|AAV78991.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129440|gb|AAX67143.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365670|gb|ABX69438.1| hypothetical protein SPAB_04114 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401107|gb|ACF61329.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409353|gb|ACF69572.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458654|gb|EDX47493.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713444|gb|ACF92665.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633532|gb|EDX51946.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095635|emb|CAR61203.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212420|gb|ACH49817.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240432|gb|EDY23052.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289064|gb|EDY28433.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939489|gb|ACH76822.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605782|gb|EDZ04327.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319945|gb|EDZ05151.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273981|emb|CAR38987.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323254|gb|EDZ11093.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327000|gb|EDZ13764.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333717|gb|EDZ20481.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337869|gb|EDZ24633.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343382|gb|EDZ30146.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348488|gb|EDZ35119.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710350|emb|CAR34708.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469622|gb|ACN47452.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248464|emb|CBG26301.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995496|gb|ACY90381.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159848|emb|CBW19367.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914323|dbj|BAJ38297.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087743|emb|CBY97507.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225982|gb|EFX51036.1| Transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615302|gb|EFY12223.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618339|gb|EFY15230.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622856|gb|EFY19700.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626822|gb|EFY23619.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631391|gb|EFY28151.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635342|gb|EFY32056.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643341|gb|EFY39905.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647087|gb|EFY43588.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648890|gb|EFY45335.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655082|gb|EFY51393.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657685|gb|EFY53953.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664181|gb|EFY60379.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667464|gb|EFY63626.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674712|gb|EFY70804.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675655|gb|EFY71728.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682291|gb|EFY78314.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684894|gb|EFY80892.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716294|gb|EFZ07865.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131658|gb|ADX19088.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195901|gb|EFZ81072.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199018|gb|EFZ84115.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204282|gb|EFZ89291.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207629|gb|EFZ92576.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211318|gb|EFZ96162.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214740|gb|EFZ99489.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221220|gb|EGA05646.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224039|gb|EGA08332.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230312|gb|EGA14431.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233288|gb|EGA17382.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239325|gb|EGA23375.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242424|gb|EGA26450.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246934|gb|EGA30900.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254133|gb|EGA37953.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255250|gb|EGA39027.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262713|gb|EGA46269.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264023|gb|EGA47531.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269409|gb|EGA52864.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625049|gb|EGE31394.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629321|gb|EGE35664.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990156|gb|AEF09139.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 158 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158 >gi|188493925|ref|ZP_03001195.1| transcription elongation factor GreA [Escherichia coli 53638] gi|188489124|gb|EDU64227.1| transcription elongation factor GreA [Escherichia coli 53638] Length = 158 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSNEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|152992894|ref|YP_001358615.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1] gi|166201123|sp|A6Q9U9|GREA_SULNB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151424755|dbj|BAF72258.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1] Length = 162 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/154 (49%), Positives = 109/154 (70%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+ + + K+ +EL + ER I K I EAR GDL ENAEY AAK+ Q L E R+ Sbjct: 3 KEPMLEETYRKLSEELEQLKSVERGVIAKVIDEARELGDLKENAEYHAAKDKQGLMEARI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+V+D ST S DR++FG+TV LV++++ ++ Y IVG QE++ QSGL+SI Sbjct: 63 AELTDVVGRAQVVDPSTFSHDRVSFGSTVVLVDQDTDEEVRYTIVGGQESNPQSGLISIQ 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR LIGKE GD + + P G+KTY+I ++L+ Sbjct: 123 SPMARVLIGKEEGDEVELTLPSGKKTYDIEEILY 156 >gi|307129375|ref|YP_003881391.1| transcription elongation factor [Dickeya dadantii 3937] gi|306526904|gb|ADM96834.1| transcription elongation factor [Dickeya dadantii 3937] Length = 158 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNVDTEEEQTYRIVGDDEADFKLNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 123 NSPIARGLIGKEEDDVVAISTPGGVVEYEILKVEYL 158 >gi|110833180|ref|YP_692039.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2] gi|110646291|emb|CAL15767.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2] Length = 170 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ ++P+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 12 IMQRVPMTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCE 71 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+A++E ++ A++IDI + ++ FG TV++++ ++ + K YQIVGD EA+++ G Sbjct: 72 GRIADIEGKLSNAQIIDIQDIENTGKVIFGVTVTILDVDTDETKVYQIVGDDEANIKEGK 131 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIG+E GD++ ++ PGG + YE+ QV I Sbjct: 132 LSVNSPIARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 170 >gi|87200244|ref|YP_497501.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|123722531|sp|Q2G656|GREA_NOVAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|87135925|gb|ABD26667.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ ++G++K+ EL+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKLPMLAEGYEKLTAELKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID +T+SGD+I FGATV+L++ + K YQIVG EAD + G++S Sbjct: 63 TIADLEDRVSRAQIIDPTTLSGDKIIFGATVTLLDDDEKPVK-YQIVGPYEADAKKGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ +ALIG+++ + I V P G+K Y + ++ +I Sbjct: 122 YNSPLGKALIGRKVDEEIEVTVPSGDKFYLVQKIEFI 158 >gi|218779092|ref|YP_002430410.1| transcription elongation factor GreA [Desulfatibacillum alkenivorans AK-01] gi|218760476|gb|ACL02942.1| transcription elongation factor GreA [Desulfatibacillum alkenivorans AK-01] Length = 155 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 111/154 (72%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G +++Q EL + ERPR I+ I EARA+GDLSENAEY AAKE Q G Sbjct: 1 MERTPITPEGLERLQNELVQLKTVERPRNIQDIEEARAHGDLSENAEYHAAKERQGFIAG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE + A+VID ST GD FGATV L ++G++ +YQ++G E+++Q+G +S Sbjct: 61 RIAELEYKVASADVIDPSTQKGDTAVFGATVVLENIDTGEEVSYQLLGPDESNIQAGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++SP+ +AL+GK+ GD + V PGG++ +E++++ Sbjct: 121 VTSPLGKALVGKKPGDEVKVQTPGGQRHFEVVEI 154 >gi|206577730|ref|YP_002236407.1| transcription elongation factor GreA [Klebsiella pneumoniae 342] gi|288933391|ref|YP_003437450.1| transcription elongation factor GreA [Klebsiella variicola At-22] gi|290511558|ref|ZP_06550927.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55] gi|206566788|gb|ACI08564.1| transcription elongation factor GreA [Klebsiella pneumoniae 342] gi|288888120|gb|ADC56438.1| transcription elongation factor GreA [Klebsiella variicola At-22] gi|289776551|gb|EFD84550.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++++ PGGE YEI +V ++ Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158 >gi|254512527|ref|ZP_05124594.1| transcription elongation factor GreA [Rhodobacteraceae bacterium KLH11] gi|221536238|gb|EEE39226.1| transcription elongation factor GreA [Rhodobacteraceae bacterium KLH11] Length = 156 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG Sbjct: 1 MEKIPMTPAGNAALEAELKNLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VID S ++G I FGA V+LV++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVIDPSKLAG-AIKFGAKVTLVDEDTDEEKTWQIVGEYEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG ++YE+L + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIQY 155 >gi|94498550|ref|ZP_01305105.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58] gi|94421993|gb|EAT07039.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNAQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ ++RA+VID T+SG++I FGATV+L++++ K YQIVG EAD ++G++S Sbjct: 63 TINDLEDKLSRAQVIDPKTLSGNKIIFGATVTLMDEDDKPVK-YQIVGQAEADAKAGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ RALIG+E+GD + V+ P G+K Y + ++ ++ Sbjct: 122 YSSPLGRALIGREVGDEVEVSVPSGDKFYLVDKIEFL 158 >gi|320174545|gb|EFW49681.1| Transcription elongation factor GreA [Shigella dysenteriae CDC 74-1112] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|307295447|ref|ZP_07575283.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] gi|306878486|gb|EFN09706.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNAQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD + G++S Sbjct: 63 TIADLEDKLSRAQIIDPTTLSGDKIVFGATVTLLDEDEKPVK-YQIVGQAEADAKVGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158 >gi|326387386|ref|ZP_08208995.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208042|gb|EGD58850.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 4/158 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ +G++K+ EL+ +EERP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKLPMLQEGYEKLTAELKA-LREERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLV 120 + +LE+ I+RA++ID +T+SGDRI FGATV+L+ + DK YQIVG EADV+ G + Sbjct: 63 SIGDLEDKISRAQIIDPTTLSGDRIVFGATVTLL--DDADKPVRYQIVGLAEADVKRGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SP+ RALIG+++ D + V P G+K Y + ++ +I Sbjct: 121 SYNSPLGRALIGRKVDDEVEVTVPSGDKFYVVEKIEFI 158 >gi|24114470|ref|NP_708980.1| transcription elongation factor GreA [Shigella flexneri 2a str. 301] gi|26249764|ref|NP_755804.1| transcription elongation factor GreA [Escherichia coli CFT073] gi|30064519|ref|NP_838690.1| transcription elongation factor GreA [Shigella flexneri 2a str. 2457T] gi|38704147|ref|NP_312087.2| transcription elongation factor GreA [Escherichia coli O157:H7 str. Sakai] gi|89109944|ref|AP_003724.1| transcription elongation factor [Escherichia coli str. K-12 substr. W3110] gi|90111554|ref|NP_417648.4| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|91212603|ref|YP_542589.1| transcription elongation factor GreA [Escherichia coli UTI89] gi|110643421|ref|YP_671151.1| transcription elongation factor GreA [Escherichia coli 536] gi|110807047|ref|YP_690567.1| transcription elongation factor GreA [Shigella flexneri 5 str. 8401] gi|117625475|ref|YP_858798.1| transcription elongation factor GreA [Escherichia coli APEC O1] gi|157156605|ref|YP_001464656.1| transcription elongation factor GreA [Escherichia coli E24377A] gi|157162664|ref|YP_001459982.1| transcription elongation factor GreA [Escherichia coli HS] gi|161367516|ref|NP_289755.2| transcription elongation factor GreA [Escherichia coli O157:H7 EDL933] gi|161950034|ref|YP_404844.2| transcription elongation factor GreA [Shigella dysenteriae Sd197] gi|161984851|ref|YP_409528.2| transcription elongation factor GreA [Shigella boydii Sb227] gi|161986440|ref|YP_312137.2| transcription elongation factor GreA [Shigella sonnei Ss046] gi|168752874|ref|ZP_02777896.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4113] gi|168754163|ref|ZP_02779170.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4401] gi|168769037|ref|ZP_02794044.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4486] gi|168781325|ref|ZP_02806332.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4076] gi|168786067|ref|ZP_02811074.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC869] gi|170018569|ref|YP_001723523.1| transcription elongation factor GreA [Escherichia coli ATCC 8739] gi|170082716|ref|YP_001732036.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|170683303|ref|YP_001745453.1| transcription elongation factor GreA [Escherichia coli SMS-3-5] gi|187733737|ref|YP_001881904.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94] gi|194430233|ref|ZP_03062731.1| transcription elongation factor GreA [Escherichia coli B171] gi|195938400|ref|ZP_03083782.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4024] gi|208812520|ref|ZP_03253849.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4045] gi|208818669|ref|ZP_03258989.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4042] gi|209400428|ref|YP_002272651.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4115] gi|209920656|ref|YP_002294740.1| transcription elongation factor GreA [Escherichia coli SE11] gi|215488497|ref|YP_002330928.1| transcription elongation factor GreA [Escherichia coli O127:H6 str. E2348/69] gi|217326880|ref|ZP_03442963.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14588] gi|218550464|ref|YP_002384255.1| transcription elongation factor GreA [Escherichia fergusonii ATCC 35469] gi|218555751|ref|YP_002388664.1| transcription elongation factor GreA [Escherichia coli IAI1] gi|218560251|ref|YP_002393164.1| transcription elongation factor GreA [Escherichia coli S88] gi|218691471|ref|YP_002399683.1| transcription elongation factor GreA [Escherichia coli ED1a] gi|218696886|ref|YP_002404553.1| transcription elongation factor GreA [Escherichia coli 55989] gi|218701950|ref|YP_002409579.1| transcription elongation factor GreA [Escherichia coli IAI39] gi|218706801|ref|YP_002414320.1| transcription elongation factor GreA [Escherichia coli UMN026] gi|227887902|ref|ZP_04005707.1| transcription elongation factor GreA [Escherichia coli 83972] gi|237706067|ref|ZP_04536548.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA] gi|238902283|ref|YP_002928079.1| transcription elongation factor [Escherichia coli BW2952] gi|253771985|ref|YP_003034816.1| transcription elongation factor GreA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038346|ref|ZP_04872404.1| transcription elongation factor GreA [Escherichia sp. 1_1_43] gi|254163123|ref|YP_003046231.1| transcription elongation factor GreA [Escherichia coli B str. REL606] gi|254795130|ref|YP_003079967.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14359] gi|256018900|ref|ZP_05432765.1| transcription elongation factor GreA [Shigella sp. D9] gi|256024244|ref|ZP_05438109.1| transcription elongation factor GreA [Escherichia sp. 4_1_40B] gi|260845994|ref|YP_003223772.1| transcription elongation factor GreA [Escherichia coli O103:H2 str. 12009] gi|260857308|ref|YP_003231199.1| transcription elongation factor GreA [Escherichia coli O26:H11 str. 11368] gi|261228192|ref|ZP_05942473.1| transcription elongation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261255048|ref|ZP_05947581.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. FRIK966] gi|291284555|ref|YP_003501373.1| Transcription elongation factor greA [Escherichia coli O55:H7 str. CB9615] gi|293406790|ref|ZP_06650716.1| transcription elongation factor greA [Escherichia coli FVEC1412] gi|293412553|ref|ZP_06655276.1| transcription elongation factor greA [Escherichia coli B354] gi|293416611|ref|ZP_06659250.1| transcription elongation factor greA [Escherichia coli B185] gi|293449515|ref|ZP_06663936.1| transcription elongation factor greA [Escherichia coli B088] gi|297519952|ref|ZP_06938338.1| transcription elongation factor GreA [Escherichia coli OP50] gi|298382531|ref|ZP_06992128.1| transcription elongation factor greA [Escherichia coli FVEC1302] gi|300817566|ref|ZP_07097782.1| transcription elongation factor GreA [Escherichia coli MS 107-1] gi|300823855|ref|ZP_07103979.1| transcription elongation factor GreA [Escherichia coli MS 119-7] gi|300897946|ref|ZP_07116324.1| transcription elongation factor GreA [Escherichia coli MS 198-1] gi|300904368|ref|ZP_07122220.1| transcription elongation factor GreA [Escherichia coli MS 84-1] gi|300926078|ref|ZP_07141897.1| transcription elongation factor GreA [Escherichia coli MS 182-1] gi|300929873|ref|ZP_07145318.1| transcription elongation factor GreA [Escherichia coli MS 187-1] gi|300938093|ref|ZP_07152870.1| transcription elongation factor GreA [Escherichia coli MS 21-1] gi|300948832|ref|ZP_07162899.1| transcription elongation factor GreA [Escherichia coli MS 116-1] gi|300955767|ref|ZP_07168111.1| transcription elongation factor GreA [Escherichia coli MS 175-1] gi|300980086|ref|ZP_07174836.1| transcription elongation factor GreA [Escherichia coli MS 200-1] gi|300990828|ref|ZP_07179355.1| transcription elongation factor GreA [Escherichia coli MS 45-1] gi|301022036|ref|ZP_07185979.1| transcription elongation factor GreA [Escherichia coli MS 69-1] gi|301047975|ref|ZP_07195018.1| transcription elongation factor GreA [Escherichia coli MS 185-1] gi|301301761|ref|ZP_07207895.1| transcription elongation factor GreA [Escherichia coli MS 124-1] gi|301326392|ref|ZP_07219750.1| transcription elongation factor GreA [Escherichia coli MS 78-1] gi|301644892|ref|ZP_07244863.1| transcription elongation factor GreA [Escherichia coli MS 146-1] gi|306816477|ref|ZP_07450609.1| transcription elongation factor GreA [Escherichia coli NC101] gi|307139867|ref|ZP_07499223.1| transcription elongation factor GreA [Escherichia coli H736] gi|307313114|ref|ZP_07592740.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309793759|ref|ZP_07688185.1| transcription elongation factor GreA [Escherichia coli MS 145-7] gi|312968481|ref|ZP_07782690.1| transcription elongation factor GreA domain protein [Escherichia coli 2362-75] gi|312972545|ref|ZP_07786719.1| transcription elongation factor GreA domain protein [Escherichia coli 1827-70] gi|331643879|ref|ZP_08345010.1| transcription elongation factor GreA [Escherichia coli H736] gi|331648981|ref|ZP_08350069.1| transcription elongation factor GreA [Escherichia coli M605] gi|331654785|ref|ZP_08355785.1| transcription elongation factor GreA [Escherichia coli M718] gi|331659468|ref|ZP_08360410.1| transcription elongation factor GreA [Escherichia coli TA206] gi|331664793|ref|ZP_08365698.1| transcription elongation factor GreA [Escherichia coli TA143] gi|331670008|ref|ZP_08370853.1| transcription elongation factor GreA [Escherichia coli TA271] gi|331674713|ref|ZP_08375472.1| transcription elongation factor GreA [Escherichia coli TA280] gi|331679260|ref|ZP_08379932.1| transcription elongation factor GreA [Escherichia coli H591] gi|331684828|ref|ZP_08385420.1| transcription elongation factor GreA [Escherichia coli H299] gi|332279988|ref|ZP_08392401.1| transcription elongation factor GreA [Shigella sp. D9] gi|62288136|sp|P0A6W5|GREA_ECOLI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288137|sp|P0A6W6|GREA_ECOL6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288138|sp|P0A6W7|GREA_ECO57 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288139|sp|P0A6W8|GREA_SHIFL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157831240|pdb|1GRJ|A Chain A, Grea Transcript Cleavage Factor From Escherichia Coli gi|26110192|gb|AAN82378.1|AE016767_138 Transcription elongation factor greA [Escherichia coli CFT073] gi|41611|emb|CAA38521.1| unnamed protein product [Escherichia coli K-12] gi|746399|gb|AAA97506.1| transcription elongation factor [Escherichia coli] gi|24053653|gb|AAN44687.1| transcription elongation factor [Shigella flexneri 2a str. 301] gi|30042778|gb|AAP18501.1| transcription elongation factor [Shigella flexneri 2a str. 2457T] gi|85675975|dbj|BAE77225.1| transcription elongation factor [Escherichia coli str. K12 substr. W3110] gi|87082225|gb|AAC76213.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|91074177|gb|ABE09058.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Escherichia coli UTI89] gi|110345013|gb|ABG71250.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Escherichia coli 536] gi|110616595|gb|ABF05262.1| transcription elongation factor [Shigella flexneri 5 str. 8401] gi|115514599|gb|ABJ02674.1| transcription elongation factor GreA [Escherichia coli APEC O1] gi|157068344|gb|ABV07599.1| transcription elongation factor GreA [Escherichia coli HS] gi|157078635|gb|ABV18343.1| transcription elongation factor GreA [Escherichia coli E24377A] gi|169753497|gb|ACA76196.1| transcription elongation factor GreA [Escherichia coli ATCC 8739] gi|169890551|gb|ACB04258.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|170521021|gb|ACB19199.1| transcription elongation factor GreA [Escherichia coli SMS-3-5] gi|187430729|gb|ACD10003.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94] gi|188013493|gb|EDU51615.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4113] gi|189001112|gb|EDU70098.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4076] gi|189358744|gb|EDU77163.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4401] gi|189361832|gb|EDU80251.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4486] gi|189373995|gb|EDU92411.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC869] gi|194411734|gb|EDX28058.1| transcription elongation factor GreA [Escherichia coli B171] gi|208733797|gb|EDZ82484.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4045] gi|208738792|gb|EDZ86474.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4042] gi|209161828|gb|ACI39261.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4115] gi|209913915|dbj|BAG78989.1| transcription elongation factor [Escherichia coli SE11] gi|215266569|emb|CAS11008.1| transcription elongation factor [Escherichia coli O127:H6 str. E2348/69] gi|217319247|gb|EEC27672.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14588] gi|218353618|emb|CAU99817.1| transcription elongation factor [Escherichia coli 55989] gi|218358005|emb|CAQ90651.1| transcription elongation factor [Escherichia fergusonii ATCC 35469] gi|218362519|emb|CAR00143.1| transcription elongation factor [Escherichia coli IAI1] gi|218367020|emb|CAR04791.1| transcription elongation factor [Escherichia coli S88] gi|218371936|emb|CAR19792.1| transcription elongation factor [Escherichia coli IAI39] gi|218429035|emb|CAR09981.2| transcription elongation factor [Escherichia coli ED1a] gi|218433898|emb|CAR14815.1| transcription elongation factor [Escherichia coli UMN026] gi|222034898|emb|CAP77641.1| Transcription elongation factor greA [Escherichia coli LF82] gi|226839970|gb|EEH71991.1| transcription elongation factor GreA [Escherichia sp. 1_1_43] gi|226899107|gb|EEH85366.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA] gi|227835298|gb|EEJ45764.1| transcription elongation factor GreA [Escherichia coli 83972] gi|238863677|gb|ACR65675.1| transcription elongation factor [Escherichia coli BW2952] gi|242378724|emb|CAQ33514.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)] gi|253323029|gb|ACT27631.1| transcription elongation factor GreA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975024|gb|ACT40695.1| transcription elongation factor GreA [Escherichia coli B str. REL606] gi|253979180|gb|ACT44850.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)] gi|254594530|gb|ACT73891.1| transcription elongation factor [Escherichia coli O157:H7 str. TW14359] gi|257755957|dbj|BAI27459.1| transcription elongation factor GreA [Escherichia coli O26:H11 str. 11368] gi|257761141|dbj|BAI32638.1| transcription elongation factor GreA [Escherichia coli O103:H2 str. 12009] gi|260447792|gb|ACX38214.1| transcription elongation factor GreA [Escherichia coli DH1] gi|281180223|dbj|BAI56553.1| transcription elongation factor [Escherichia coli SE15] gi|281602564|gb|ADA75548.1| Transcription elongation factor greA [Shigella flexneri 2002017] gi|284923204|emb|CBG36298.1| transcription elongation factor [Escherichia coli 042] gi|290764428|gb|ADD58389.1| Transcription elongation factor greA [Escherichia coli O55:H7 str. CB9615] gi|291322605|gb|EFE62034.1| transcription elongation factor greA [Escherichia coli B088] gi|291426796|gb|EFE99828.1| transcription elongation factor greA [Escherichia coli FVEC1412] gi|291431967|gb|EFF04950.1| transcription elongation factor greA [Escherichia coli B185] gi|291469324|gb|EFF11815.1| transcription elongation factor greA [Escherichia coli B354] gi|294491555|gb|ADE90311.1| transcription elongation factor GreA [Escherichia coli IHE3034] gi|298277671|gb|EFI19187.1| transcription elongation factor greA [Escherichia coli FVEC1302] gi|300300160|gb|EFJ56545.1| transcription elongation factor GreA [Escherichia coli MS 185-1] gi|300307860|gb|EFJ62380.1| transcription elongation factor GreA [Escherichia coli MS 200-1] gi|300317362|gb|EFJ67146.1| transcription elongation factor GreA [Escherichia coli MS 175-1] gi|300358338|gb|EFJ74208.1| transcription elongation factor GreA [Escherichia coli MS 198-1] gi|300397751|gb|EFJ81289.1| transcription elongation factor GreA [Escherichia coli MS 69-1] gi|300403691|gb|EFJ87229.1| transcription elongation factor GreA [Escherichia coli MS 84-1] gi|300407048|gb|EFJ90586.1| transcription elongation factor GreA [Escherichia coli MS 45-1] gi|300417867|gb|EFK01178.1| transcription elongation factor GreA [Escherichia coli MS 182-1] gi|300451688|gb|EFK15308.1| transcription elongation factor GreA [Escherichia coli MS 116-1] gi|300456914|gb|EFK20407.1| transcription elongation factor GreA [Escherichia coli MS 21-1] gi|300462206|gb|EFK25699.1| transcription elongation factor GreA [Escherichia coli MS 187-1] gi|300523623|gb|EFK44692.1| transcription elongation factor GreA [Escherichia coli MS 119-7] gi|300529864|gb|EFK50926.1| transcription elongation factor GreA [Escherichia coli MS 107-1] gi|300842742|gb|EFK70502.1| transcription elongation factor GreA [Escherichia coli MS 124-1] gi|300846911|gb|EFK74671.1| transcription elongation factor GreA [Escherichia coli MS 78-1] gi|301076798|gb|EFK91604.1| transcription elongation factor GreA [Escherichia coli MS 146-1] gi|305850042|gb|EFM50501.1| transcription elongation factor GreA [Escherichia coli NC101] gi|306907025|gb|EFN37533.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307555275|gb|ADN48050.1| transcription elongation factor GreA [Escherichia coli ABU 83972] gi|307625220|gb|ADN69524.1| transcription elongation factor GreA [Escherichia coli UM146] gi|308122716|gb|EFO59978.1| transcription elongation factor GreA [Escherichia coli MS 145-7] gi|309703607|emb|CBJ02947.1| transcription elongation factor [Escherichia coli ETEC H10407] gi|310334922|gb|EFQ01127.1| transcription elongation factor GreA domain protein [Escherichia coli 1827-70] gi|312286699|gb|EFR14610.1| transcription elongation factor GreA domain protein [Escherichia coli 2362-75] gi|312947738|gb|ADR28565.1| transcription elongation factor GreA [Escherichia coli O83:H1 str. NRG 857C] gi|313648576|gb|EFS13018.1| transcription elongation factor GreA domain protein [Shigella flexneri 2a str. 2457T] gi|315062487|gb|ADT76814.1| transcription elongation factor [Escherichia coli W] gi|315137767|dbj|BAJ44926.1| transcription elongation factor greA [Escherichia coli DH1] gi|315257106|gb|EFU37074.1| transcription elongation factor GreA [Escherichia coli MS 85-1] gi|315288955|gb|EFU48353.1| transcription elongation factor GreA [Escherichia coli MS 110-3] gi|315294888|gb|EFU54227.1| transcription elongation factor GreA [Escherichia coli MS 153-1] gi|315297888|gb|EFU57158.1| transcription elongation factor GreA [Escherichia coli MS 16-3] gi|315617264|gb|EFU97873.1| transcription elongation factor GreA domain protein [Escherichia coli 3431] gi|320181456|gb|EFW56374.1| Transcription elongation factor GreA [Shigella boydii ATCC 9905] gi|320186668|gb|EFW61392.1| Transcription elongation factor GreA [Shigella flexneri CDC 796-83] gi|320189534|gb|EFW64193.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. EC1212] gi|320194666|gb|EFW69296.1| Transcription elongation factor GreA [Escherichia coli WV_060327] gi|320202095|gb|EFW76670.1| Transcription elongation factor GreA [Escherichia coli EC4100B] gi|320640252|gb|EFX09824.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. G5101] gi|320645549|gb|EFX14558.1| transcription elongation factor GreA [Escherichia coli O157:H- str. 493-89] gi|320650859|gb|EFX19316.1| transcription elongation factor GreA [Escherichia coli O157:H- str. H 2687] gi|320656240|gb|EFX24152.1| transcription elongation factor GreA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661930|gb|EFX29338.1| transcription elongation factor GreA [Escherichia coli O55:H7 str. USDA 5905] gi|320666765|gb|EFX33744.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. LSU-61] gi|323162873|gb|EFZ48708.1| transcription elongation factor GreA domain protein [Escherichia coli E128010] gi|323165141|gb|EFZ50931.1| transcription elongation factor GreA domain protein [Shigella sonnei 53G] gi|323183135|gb|EFZ68533.1| transcription elongation factor GreA domain protein [Escherichia coli 1357] gi|323189198|gb|EFZ74482.1| transcription elongation factor GreA domain protein [Escherichia coli RN587/1] gi|323376925|gb|ADX49193.1| transcription elongation factor GreA [Escherichia coli KO11] gi|323936125|gb|EGB32419.1| transcription elongation protein GreA [Escherichia coli E1520] gi|323941719|gb|EGB37898.1| transcription elongation proteinGreA [Escherichia coli E482] gi|323946965|gb|EGB42981.1| transcription elongation protein GreA [Escherichia coli H120] gi|323951300|gb|EGB47175.1| transcription elongation proteinGreA [Escherichia coli H252] gi|323957672|gb|EGB53386.1| transcription elongation proteinGreA [Escherichia coli H263] gi|323961164|gb|EGB56778.1| transcription elongation proteinGreA [Escherichia coli H489] gi|323966361|gb|EGB61795.1| transcription elongation proteinGreA [Escherichia coli M863] gi|323970256|gb|EGB65527.1| transcription elongation proteinGreA [Escherichia coli TA007] gi|323979102|gb|EGB74180.1| transcription elongation proteinGreA [Escherichia coli TW10509] gi|324008752|gb|EGB77971.1| transcription elongation factor GreA [Escherichia coli MS 57-2] gi|324012130|gb|EGB81349.1| transcription elongation factor GreA [Escherichia coli MS 60-1] gi|324018294|gb|EGB87513.1| transcription elongation factor GreA [Escherichia coli MS 117-3] gi|324115215|gb|EGC09179.1| transcription elongation proteinGreA [Escherichia fergusonii B253] gi|324119546|gb|EGC13428.1| transcription elongation proteinGreA [Escherichia coli E1167] gi|325498762|gb|EGC96621.1| transcription elongation factor GreA [Escherichia fergusonii ECD227] gi|326337881|gb|EGD61715.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. 1125] gi|326347451|gb|EGD71176.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. 1044] gi|330909235|gb|EGH37749.1| transcription elongation factor GreA [Escherichia coli AA86] gi|331037350|gb|EGI09574.1| transcription elongation factor GreA [Escherichia coli H736] gi|331042728|gb|EGI14870.1| transcription elongation factor GreA [Escherichia coli M605] gi|331048167|gb|EGI20244.1| transcription elongation factor GreA [Escherichia coli M718] gi|331054050|gb|EGI26079.1| transcription elongation factor GreA [Escherichia coli TA206] gi|331058041|gb|EGI30023.1| transcription elongation factor GreA [Escherichia coli TA143] gi|331062921|gb|EGI34835.1| transcription elongation factor GreA [Escherichia coli TA271] gi|331068152|gb|EGI39548.1| transcription elongation factor GreA [Escherichia coli TA280] gi|331073325|gb|EGI44648.1| transcription elongation factor GreA [Escherichia coli H591] gi|331078443|gb|EGI49649.1| transcription elongation factor GreA [Escherichia coli H299] gi|332086244|gb|EGI91402.1| transcription elongation factor GreA domain protein [Shigella boydii 5216-82] gi|332086457|gb|EGI91604.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 155-74] gi|332090708|gb|EGI95802.1| transcription elongation factor GreA domain protein [Shigella boydii 3594-74] gi|332102340|gb|EGJ05686.1| transcription elongation factor GreA [Shigella sp. D9] gi|332345137|gb|AEE58471.1| transcription elongation factor protein GreA [Escherichia coli UMNK88] gi|332752340|gb|EGJ82730.1| transcription elongation factor GreA domain protein [Shigella flexneri 4343-70] gi|332752866|gb|EGJ83251.1| transcription elongation factor GreA domain protein [Shigella flexneri K-671] gi|332754345|gb|EGJ84711.1| transcription elongation factor GreA domain protein [Shigella flexneri 2747-71] gi|332765177|gb|EGJ95404.1| transcription elongation factor GreA [Shigella flexneri 2930-71] gi|332998823|gb|EGK18419.1| transcription elongation factor GreA domain protein [Shigella flexneri VA-6] gi|332999259|gb|EGK18845.1| transcription elongation factor GreA domain protein [Shigella flexneri K-272] gi|333000243|gb|EGK19826.1| transcription elongation factor GreA domain protein [Shigella flexneri K-218] gi|333014600|gb|EGK33947.1| transcription elongation factor GreA domain protein [Shigella flexneri K-304] gi|333014983|gb|EGK34327.1| transcription elongation factor GreA domain protein [Shigella flexneri K-227] Length = 158 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|261493679|ref|ZP_05990198.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494346|ref|ZP_05990840.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309995|gb|EEY11204.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310679|gb|EEY11863.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 179 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q E Sbjct: 21 LMKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCE 80 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL Sbjct: 81 GRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGL 140 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I Sbjct: 141 ISVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI 179 >gi|300718587|ref|YP_003743390.1| transcription elongation factor [Erwinia billingiae Eb661] gi|299064423|emb|CAX61543.1| Transcription elongation factor [Erwinia billingiae Eb661] Length = 158 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTIKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FG+TV ++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMNANGRVIFGSTVKVLNLDTDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE+ D+ V PGG+ YEIL++ ++ Sbjct: 121 SVNSPMARGLIGKEVDDVTIVKTPGGDVEYEILKIEYL 158 >gi|304311954|ref|YP_003811552.1| Transcription elongation factor [gamma proteobacterium HdN1] gi|301797687|emb|CBL45909.1| Transcription elongation factor [gamma proteobacterium HdN1] Length = 159 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+ ++P+T +G ++++EL ++ ERPR++ AI+EARA+GDL ENAEY AAKE Q E Sbjct: 1 MIKRVPMTVEGEVRLREELDNLKKVERPRVVAAIAEARAHGDLKENAEYHAAKEQQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E+ ++ A+VIDI+ ++ ++ FG T+ L + + +++ ++IVG+ EAD + G Sbjct: 61 GRIAEIESKLSEAQVIDITRIAPTGKVIFGVTLKLYDVDKDEERAFKIVGEDEADFKEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SPIAR LIGK +GD +SV+ PGG TYEIL+V Sbjct: 121 ISVGSPIARGLIGKFVGDEVSVDTPGGGVTYEILEV 156 >gi|85708556|ref|ZP_01039622.1| transcription elongation factor [Erythrobacter sp. NAP1] gi|85690090|gb|EAQ30093.1| transcription elongation factor [Erythrobacter sp. NAP1] Length = 158 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/157 (49%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ +EERPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 MEKVPMLAEGYERLTTDLKA-LREERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE I+RA++ID T+SGDRI FGATV+L++++ K YQIVG+ EAD G +S Sbjct: 63 QIGDLEGKISRAQIIDPKTLSGDRIIFGATVTLLDEDDKPIK-YQIVGETEADAAKGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARA+IGK++ + I V P G+K Y + ++ +I Sbjct: 122 YSSPLARAMIGKQVEEEIEVTVPSGDKFYLVEKIEFI 158 >gi|238783524|ref|ZP_04627546.1| Transcription elongation factor greA [Yersinia bercovieri ATCC 43970] gi|238797561|ref|ZP_04641058.1| Transcription elongation factor greA [Yersinia mollaretii ATCC 43969] gi|238715579|gb|EEQ07569.1| Transcription elongation factor greA [Yersinia bercovieri ATCC 43970] gi|238718558|gb|EEQ10377.1| Transcription elongation factor greA [Yersinia mollaretii ATCC 43969] Length = 158 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G DK+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGADKLREELDFLKGVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ + +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDIEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|238899018|ref|YP_002924700.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259647646|sp|C4K7K9|GREA_HAMD5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229466778|gb|ACQ68552.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 158 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +K+++EL+ + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTLRGAEKLREELQHLKSVLRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ ++ A++ID++ ++ I FGATV+++ +S +KK YQIVGD EA+ + L+S+ Sbjct: 63 QEIESKLSHAQIIDVTKIANKGIVIFGATVTVLNTHSEEKKIYQIVGDDEANFKKDLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LI K++ D+ ++ PGGE YEIL V + Sbjct: 123 NSPIARGLIAKKISDVAVIHTPGGEVEYEILDVKYC 158 >gi|296108269|ref|YP_003619970.1| transcription elongation factor GreA [Legionella pneumophila 2300/99 Alcoy] gi|295650171|gb|ADG26018.1| transcription elongation factor GreA [Legionella pneumophila 2300/99 Alcoy] Length = 155 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL Sbjct: 1 MTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153 >gi|207723992|ref|YP_002254390.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum MolK2] gi|207742902|ref|YP_002259294.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum IPO1609] gi|206589200|emb|CAQ36162.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum MolK2] gi|206594297|emb|CAQ61224.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum IPO1609] Length = 146 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ E+E+ + A+ Sbjct: 2 LKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQ 61 Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SISSPIARALIGK Sbjct: 62 VIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISISSPIARALIGK 121 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 GD+ +V APGGE+ YE+ V ++ Sbjct: 122 YEGDVATVVAPGGEREYEVRSVKYL 146 >gi|322419242|ref|YP_004198465.1| transcription elongation factor GreA [Geobacter sp. M18] gi|320125629|gb|ADW13189.1| transcription elongation factor GreA [Geobacter sp. M18] Length = 158 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RA V+D+S + D++ FGATV++ + ++ ++ Y+IVG+ EAD++ G + Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTSTEEEITYKIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGMKEYEIIEIRY 157 >gi|294011426|ref|YP_003544886.1| transcription elongation factor GreA [Sphingobium japonicum UT26S] gi|292674756|dbj|BAI96274.1| transcription elongation factor GreA [Sphingobium japonicum UT26S] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ ++LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNEQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID T+SGD++ FGATV+L++++ K YQIVG EAD + G++S Sbjct: 63 TIADLEDKLSRAQIIDPRTLSGDKVVFGATVTLLDEDDKPVK-YQIVGQAEADAKVGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158 >gi|238757567|ref|ZP_04618752.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236] gi|238704329|gb|EEP96861.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FG TV ++ +S ++++Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGCTVRVLNVDSEEEQHYRIVGDDEADFKKNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158 >gi|255068112|ref|ZP_05319967.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256] gi|261364737|ref|ZP_05977620.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996] gi|255047627|gb|EET43091.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256] gi|288567037|gb|EFC88597.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQRLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVQYI 158 >gi|222056354|ref|YP_002538716.1| transcription elongation factor GreA [Geobacter sp. FRC-32] gi|221565643|gb|ACM21615.1| transcription elongation factor GreA [Geobacter sp. FRC-32] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 112/157 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPLTKESYEFLQEELKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G + Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157 >gi|261342624|ref|ZP_05970482.1| transcription elongation factor GreA [Enterobacter cancerogenus ATCC 35316] gi|288315272|gb|EFC54210.1| transcription elongation factor GreA [Enterobacter cancerogenus ATCC 35316] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGATVTVLNLDNDEEQKYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE YEI++V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIRTPGGEVEYEIIKVEYL 158 >gi|113461143|ref|YP_719211.1| transcription elongation factor GreA [Haemophilus somnus 129PT] gi|170717727|ref|YP_001784798.1| transcription elongation factor GreA [Haemophilus somnus 2336] gi|112823186|gb|ABI25275.1| transcription elongation factor GreA [Haemophilus somnus 129PT] gi|168825856|gb|ACA31227.1| transcription elongation factor GreA [Haemophilus somnus 2336] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP IIKAISEAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAISEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++ID++ + + ++ FGATV L+ ++ ++ Y+IVGD EAD++SGL+S+ Sbjct: 63 QEIEGKLANCQIIDVTKLPNNGKVIFGATVVLLNIDTDEEVTYRIVGDDEADIKSGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK++ D + + PGG+ +EI++V + Sbjct: 123 NSPIARGLIGKDVDDTVVITTPGGKVEFEIVEVEY 157 >gi|240949666|ref|ZP_04754001.1| transcription elongation factor GreA [Actinobacillus minor NM305] gi|240295924|gb|EER46600.1| transcription elongation factor GreA [Actinobacillus minor NM305] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 123 NSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYI 158 >gi|317493617|ref|ZP_07952038.1| transcription elongation factor GreA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918560|gb|EFV39898.1| transcription elongation factor GreA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 158 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELEYLKGTRRPQIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A VID++ + R+ FG TVS+ ++ DK+ Y IVGD EAD + + Sbjct: 61 RIQEIEAKLSNANVIDVTKIPNTGRVIFGCTVSVENLDTEDKQTYSIVGDDEADFKQNRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GDI+ + PGGE +EIL+V +I Sbjct: 121 SVNSPIARGLIGKEQGDIVVIKTPGGEVEFEILKVEYI 158 >gi|292486826|ref|YP_003529696.1| transcription elongation factor greA [Erwinia amylovora CFBP1430] gi|292900775|ref|YP_003540144.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291200623|emb|CBJ47755.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291552243|emb|CBA19280.1| Transcription elongation factor greA [Erwinia amylovora CFBP1430] gi|312170894|emb|CBX79153.1| Transcription elongation factor greA [Erwinia amylovora ATCC BAA-2158] Length = 160 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ YEI++V ++ Sbjct: 121 LISVNSPMARGLVGKLADDVTVIKTPGGDVEYEIIKVEYL 160 >gi|271499165|ref|YP_003332190.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] gi|270342720|gb|ACZ75485.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] Length = 158 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ M+ + R+ FGA V+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGAMVTVMNLDTEEEQTYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 123 NSPIARGLIGKEEDDVVTISTPGGVVEYEILKVEYL 158 >gi|260869932|ref|YP_003236334.1| transcription elongation factor GreA [Escherichia coli O111:H- str. 11128] gi|257766288|dbj|BAI37783.1| transcription elongation factor GreA [Escherichia coli O111:H- str. 11128] gi|323178643|gb|EFZ64219.1| transcription elongation factor GreA domain protein [Escherichia coli 1180] Length = 158 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S ++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDKEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|224372408|ref|YP_002606780.1| transcription elongation factor GreA [Nautilia profundicola AmH] gi|254799565|sp|B9L822|GREA_NAUPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|223589756|gb|ACM93492.1| transcription elongation factor grea transcript cleavage factorgrea [Nautilia profundicola AmH] Length = 162 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q+ E Sbjct: 1 MHKEPMTKYGYEKLSKELEYLKTTARPEVAKEIDSARELGDLKENAEYHAAKEKQSHIER 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +I++RA V+D + +R+AFG+TV L++ ++ +K+ Y IVG EA+ GL+S Sbjct: 61 RIAELSDILSRAVVVDPKEHAHNRVAFGSTVYLIDVDTDEKEKYTIVGAPEANPDKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIGKE+GD + VN PGG K YEI ++ + Sbjct: 121 YHSPLAKALIGKEVGDEVEVNLPGGVKVYEIDKICY 156 >gi|254361960|ref|ZP_04978091.1| transcription elongation factor GreA [Mannheimia haemolytica PHL213] gi|153093507|gb|EDN74487.1| transcription elongation factor GreA [Mannheimia haemolytica PHL213] Length = 158 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I Sbjct: 123 NSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI 158 >gi|238793013|ref|ZP_04636642.1| Transcription elongation factor greA [Yersinia intermedia ATCC 29909] gi|238727613|gb|EEQ19138.1| Transcription elongation factor greA [Yersinia intermedia ATCC 29909] Length = 158 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITRMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|152980351|ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] gi|151280428|gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] Length = 157 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+ Sbjct: 4 PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E + ++VID +T+ + R+ F ATV L + SG+K YQIVG EAD++ VSI+S Sbjct: 64 IEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARA+IGK GD++ V AP G + YEILQV +I Sbjct: 124 PIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157 >gi|293393162|ref|ZP_06637477.1| transcription elongation factor GreA [Serratia odorifera DSM 4582] gi|291424308|gb|EFE97522.1| transcription elongation factor GreA [Serratia odorifera DSM 4582] Length = 158 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTLFGAEKLREELEYLKSVRRPKIIADIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M R+ FG+TV+++ +S D+ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNTGRVIFGSTVTVMNLDSEDEVTYRIVGDDEADFKKNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|157148750|ref|YP_001456069.1| transcription elongation factor GreA [Citrobacter koseri ATCC BAA-895] gi|157085955|gb|ABV15633.1| hypothetical protein CKO_04582 [Citrobacter koseri ATCC BAA-895] Length = 158 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR L+GKE D++++ PGGE YE+++V ++ Sbjct: 124 SPIARGLVGKEQDDVVTIKTPGGEVEYEVIKVEYL 158 >gi|118580935|ref|YP_902185.1| transcription elongation factor GreA [Pelobacter propionicus DSM 2379] gi|229485902|sp|A1AS07|GREA_PELPD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118503645|gb|ABL00128.1| transcription elongation factor GreA [Pelobacter propionicus DSM 2379] Length = 158 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 109/157 (69%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T + ++ +Q+EL+ + ERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSHSIPLTKESYESLQEELKRLIRVERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S M D++ FG+TV+L + S ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELNSKLARAYVVDLSNMKPDKVVFGSTVTLYDTASEEEITYKIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIDIKY 157 >gi|284799703|ref|ZP_05984625.2| transcription elongation factor GreA [Neisseria subflava NJ9703] gi|284797264|gb|EFC52611.1| transcription elongation factor GreA [Neisseria subflava NJ9703] Length = 162 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKEHKI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162 >gi|307611501|emb|CBX01175.1| transcription elongation factor GreA [Legionella pneumophila 130b] Length = 155 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL Sbjct: 1 MTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153 >gi|56460087|ref|YP_155368.1| transcription elongation factor GreA [Idiomarina loihiensis L2TR] gi|56179097|gb|AAV81819.1| Transcription elongation factor GreA [Idiomarina loihiensis L2TR] Length = 158 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G ++ EL+ + ERPRI++AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ Y+IVGD EAD++S L+ Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYKIVGDDEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE+ DI +V P GE YE++ V + Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVAVQY 157 >gi|118594565|ref|ZP_01551912.1| GreA/GreB family elongation factor [Methylophilales bacterium HTCC2181] gi|118440343|gb|EAV46970.1| GreA/GreB family elongation factor [Methylophilales bacterium HTCC2181] Length = 158 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q EGR+ Sbjct: 3 QIHMTRNGLEALKKELQQLKSVDRPAIIEAIAEARAQGDLSENAEYESAKEKQGFIEGRL 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A++E I++AEVID + + + R FGAT+ L + ++ K +QIVGD E+ ++ +SI Sbjct: 63 ADIEAKISQAEVIDPANLKAEGRCVFGATIELEDLDTEKKSTFQIVGDDESSIKDNKISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+A+ALIGKE GD++ +PGG K+++IL+VL+I Sbjct: 123 NSPLAKALIGKEAGDVVEFESPGGIKSFDILRVLYI 158 >gi|257465495|ref|ZP_05629866.1| transcription elongation factor GreA [Actinobacillus minor 202] gi|257451155|gb|EEV25198.1| transcription elongation factor GreA [Actinobacillus minor 202] Length = 158 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ ++I+ V ++ Sbjct: 123 NSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYL 158 >gi|253686964|ref|YP_003016154.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753542|gb|ACT11618.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 158 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QDIEAKLSNAQVIDVTKMTANGRVIFGATVTVMNLDNEEEQTYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPIARGLIGKEEDDVVVIRTPGGDVEYEILKVEYL 158 >gi|319639242|ref|ZP_07993993.1| transcription elongation factor greA [Neisseria mucosa C102] gi|317399426|gb|EFV80096.1| transcription elongation factor greA [Neisseria mucosa C102] Length = 158 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158 >gi|121635119|ref|YP_975364.1| transcription elongation factor [Neisseria meningitidis FAM18] gi|218768434|ref|YP_002342946.1| transcription elongation factor GreA [Neisseria meningitidis Z2491] gi|254805211|ref|YP_003083432.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|261377466|ref|ZP_05982039.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685] gi|296314208|ref|ZP_06864149.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC 43768] gi|25453011|sp|Q9JTT4|GREA_NEIMA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120866825|emb|CAM10583.1| transcription elongation factor [Neisseria meningitidis FAM18] gi|121052442|emb|CAM08778.1| transcription elongation factor [Neisseria meningitidis Z2491] gi|254668753|emb|CBA06621.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|254672956|emb|CBA07383.1| Transcription elongation factor [Neisseria meningitidis alpha275] gi|261392308|emb|CAX49834.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Neisseria meningitidis 8013] gi|269146195|gb|EEZ72613.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685] gi|296839104|gb|EFH23042.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC 43768] gi|308389534|gb|ADO31854.1| transcription elongation factor [Neisseria meningitidis alpha710] gi|319410678|emb|CBY91057.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Neisseria meningitidis WUE 2594] gi|325128511|gb|EGC51389.1| transcription elongation factor greA [Neisseria meningitidis N1568] gi|325134589|gb|EGC57233.1| transcription elongation factor greA [Neisseria meningitidis M13399] gi|325138430|gb|EGC60996.1| transcription elongation factor greA [Neisseria meningitidis ES14902] gi|325144750|gb|EGC67045.1| transcription elongation factor greA [Neisseria meningitidis M01-240013] gi|325198564|gb|ADY94020.1| transcription elongation factor greA [Neisseria meningitidis G2136] gi|325201872|gb|ADY97326.1| transcription elongation factor greA [Neisseria meningitidis M01-240149] gi|325204417|gb|ADY99870.1| transcription elongation factor greA [Neisseria meningitidis M01-240355] gi|325205816|gb|ADZ01269.1| transcription elongation factor greA [Neisseria meningitidis M04-240196] gi|325208376|gb|ADZ03828.1| transcription elongation factor greA [Neisseria meningitidis NZ-05/33] Length = 158 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|261400869|ref|ZP_05986994.1| transcription elongation factor GreA [Neisseria lactamica ATCC 23970] gi|313668543|ref|YP_004048827.1| transcription elongation factor [Neisseria lactamica ST-640] gi|269209345|gb|EEZ75800.1| transcription elongation factor GreA [Neisseria lactamica ATCC 23970] gi|309379687|emb|CBX21676.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006005|emb|CBN87464.1| transcription elongation factor [Neisseria lactamica 020-06] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVQYI 158 >gi|32490982|ref|NP_871236.1| hypothetical protein WGLp233 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340129|sp|Q8D2W9|GREA_WIGBR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25166188|dbj|BAC24379.1| greA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T KG +K+++EL++ +Q +R IIK+ISEAR YGDL ENAEYQAAKE Q E Sbjct: 1 MNYIPMTLKGAEKLREELKYLKQTKRSEIIKSISEARQYGDLKENAEYQAAKEQQYFCES 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + +++IDI + DR+ FG+T+++ + ++K Y+IVGD EA+ ++ L+ Sbjct: 61 RIKEIESKLMHSKIIDIKKIPFRDRVVFGSTITIKNLKTLEEKTYKIVGDDEANFKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSP++R LIGK+ +I+++N P G Y+IL++ ++ Sbjct: 121 SISSPLSRGLIGKKTLEIVNINTPSGIIKYKILKINYL 158 >gi|85712942|ref|ZP_01043982.1| Transcription elongation factor GreA [Idiomarina baltica OS145] gi|85693248|gb|EAQ31206.1| Transcription elongation factor GreA [Idiomarina baltica OS145] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 68/146 (46%), Positives = 112/146 (76%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G ++++QEL+ + E+RPRI++AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTERGAEQLRQELKRLKTEDRPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ YQIVGD EAD++S L+ Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYQIVGDDEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIARALIGKE+ DI +V P G Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNG 146 >gi|15602580|ref|NP_245652.1| transcription elongation factor GreA [Pasteurella multocida subsp. multocida str. Pm70] gi|13431536|sp|P57801|GREA_PASMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|12721009|gb|AAK02799.1| GreA [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 115/155 (74%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G ++++QEL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + +++ID++ + + ++ FGAT+ L+ ++ ++ +YQIVGD EA++++GL+S+ Sbjct: 63 QEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGKE+ D++ + PGG+ +EIL+V + Sbjct: 123 NSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157 >gi|283788181|ref|YP_003368046.1| transcription elongation factor [Citrobacter rodentium ICC168] gi|282951635|emb|CBG91335.1| transcription elongation factor [Citrobacter rodentium ICC168] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPLTLRGAEKLREELDFLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIN 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S +++ ++IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDSDEEQTWRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE YEI +V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGEVEYEITKVEYL 158 >gi|270158808|ref|ZP_06187465.1| transcription elongation factor GreA domain protein [Legionella longbeachae D-4968] gi|289166397|ref|YP_003456535.1| transcription elongation factor GreA [Legionella longbeachae NSW150] gi|269990833|gb|EEZ97087.1| transcription elongation factor GreA domain protein [Legionella longbeachae D-4968] gi|288859570|emb|CBJ13538.1| transcription elongation factor GreA [Legionella longbeachae NSW150] Length = 158 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G + +++EL + +RPRI+ AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKYPMTVHGAEALKEELHRLKFVDRPRIVDAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG TV++ + + YQIVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVVFGCTVTICNVANETQLTYQIVGEDEADIKQNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPI R LIGKEL D ++VN PGG YEI+ V +I Sbjct: 121 SYSSPIGRGLIGKELDDSVTVNTPGGLVEYEIIDVQYI 158 >gi|161870299|ref|YP_001599469.1| transcription elongation factor GreA [Neisseria meningitidis 053442] gi|161595852|gb|ABX73512.1| transcription elongation factor [Neisseria meningitidis 053442] Length = 173 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|261820118|ref|YP_003258224.1| transcription elongation factor GreA [Pectobacterium wasabiae WPP163] gi|261604131|gb|ACX86617.1| transcription elongation factor GreA [Pectobacterium wasabiae WPP163] Length = 159 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 113/157 (71%), Gaps = 2/157 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S Sbjct: 63 QDIEAKLSNAQVIDVTKMAANNGRVIFGATVTVMNLDNDEEQTYRIVGDDEADFKQNLIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 123 VNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159 >gi|42523662|ref|NP_969042.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus HD100] gi|39575869|emb|CAE80035.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus HD100] Length = 162 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 77/155 (49%), Positives = 108/155 (69%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T +G + EL+ EERP +I AI EARA GD+SENAEY+AAKE Q + EGR Sbjct: 7 DKLPMTIRGKALLDAELKKLLLEERPSVILAIEEARAQGDISENAEYEAAKERQAMIEGR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE++ + A+VID + + DRI FGA V +V+ S + YQIVG EADV+ G++SI Sbjct: 67 IAEIQGKLAGADVIDTAQIKADRIVFGAFVKIVDTESEETFQYQIVGVDEADVKKGMISI 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALIGK+ D ++V +P G+K +EI+ + Sbjct: 127 LSPLARALIGKKDSDTVTVQSPKGDKEFEIISFEY 161 >gi|89900792|ref|YP_523263.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] gi|89345529|gb|ABD69732.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] Length = 180 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V +P+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY+ AK+ Q EG Sbjct: 23 VATLPITKRGAEKLKAELHKLKTVDRPWVINAIAEARAQGDLSENAEYEVAKDKQGFIEG 82 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ +VID + + R+ FGATV L ++ SG YQIVG+ EAD++ GL+ Sbjct: 83 RIQEIEGKLSVCQVIDPVELHAEGRVVFGATVQLEDEASGAAVTYQIVGEDEADIKLGLI 142 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +I SPIARALIGKE GD V APGG K YE++ V ++ Sbjct: 143 NIGSPIARALIGKEQGDTAEVQAPGGIKHYEVVAVSYV 180 >gi|59801297|ref|YP_208009.1| hypothetical protein NGO0899 [Neisseria gonorrhoeae FA 1090] gi|239998864|ref|ZP_04718788.1| transcription elongation factor GreA [Neisseria gonorrhoeae 35/02] gi|240016658|ref|ZP_04723198.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA6140] gi|240112789|ref|ZP_04727279.1| transcription elongation factor GreA [Neisseria gonorrhoeae MS11] gi|240123392|ref|ZP_04736348.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID332] gi|240128094|ref|ZP_04740755.1| transcription elongation factor GreA [Neisseria gonorrhoeae SK-93-1035] gi|254493651|ref|ZP_05106822.1| transcription elongation factor [Neisseria gonorrhoeae 1291] gi|260440648|ref|ZP_05794464.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI2] gi|268594706|ref|ZP_06128873.1| transcription elongation factor [Neisseria gonorrhoeae 35/02] gi|268598857|ref|ZP_06133024.1| transcription elongation factor [Neisseria gonorrhoeae MS11] gi|268682016|ref|ZP_06148878.1| transcription elongation factor [Neisseria gonorrhoeae PID332] gi|268686483|ref|ZP_06153345.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035] gi|59718192|gb|AAW89597.1| putative transcription elongation factor [Neisseria gonorrhoeae FA 1090] gi|226512691|gb|EEH62036.1| transcription elongation factor [Neisseria gonorrhoeae 1291] gi|268548095|gb|EEZ43513.1| transcription elongation factor [Neisseria gonorrhoeae 35/02] gi|268582988|gb|EEZ47664.1| transcription elongation factor [Neisseria gonorrhoeae MS11] gi|268622300|gb|EEZ54700.1| transcription elongation factor [Neisseria gonorrhoeae PID332] gi|268626767|gb|EEZ59167.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035] Length = 158 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|304387186|ref|ZP_07369429.1| transcription elongation factor GreA [Neisseria meningitidis ATCC 13091] gi|304338753|gb|EFM04864.1| transcription elongation factor GreA [Neisseria meningitidis ATCC 13091] gi|325132389|gb|EGC55082.1| transcription elongation factor greA [Neisseria meningitidis M6190] gi|325136526|gb|EGC59130.1| transcription elongation factor greA [Neisseria meningitidis M0579] Length = 173 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|241759232|ref|ZP_04757338.1| transcription elongation factor GreA [Neisseria flavescens SK114] gi|241320368|gb|EER56665.1| transcription elongation factor GreA [Neisseria flavescens SK114] Length = 158 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158 >gi|227113764|ref|ZP_03827420.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 158 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++ M+ + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QDIEAKLSNAQVIDVTKMTANGRVIFGSTVTVMNLDNDEEQTYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPIARGLIGKEQDDVVVIRTPGGDVEYEILKVEYL 158 >gi|329893940|ref|ZP_08269975.1| Transcription elongation factor GreA [gamma proteobacterium IMCC3088] gi|328923395|gb|EGG30712.1| Transcription elongation factor GreA [gamma proteobacterium IMCC3088] Length = 159 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++ ERPRII AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTKAGEMALRAELERLRKVERPRIIAAIAEAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ + ++ FG T+ L+ + + Y+IVGD EADV+ L+ Sbjct: 61 RIMEIEGKLSYAQVIDITAIPHTGKVIFGTTIDLINLANDQEVTYRIVGDDEADVKRNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+SSPIARALIGKE GD++ V AP G+ YEI QV Sbjct: 121 SVSSPIARALIGKEEGDVVVVKAPSGDIEYEIDQV 155 >gi|332160070|ref|YP_004296647.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664300|gb|ADZ40944.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862039|emb|CBX72205.1| transcription elongation factor greA [Yersinia enterocolitica W22703] Length = 158 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158 >gi|317046732|ref|YP_004114380.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] gi|316948349|gb|ADU67824.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG +K+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV ++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVQVLNLDTDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYL 158 >gi|300113257|ref|YP_003759832.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] gi|299539194|gb|ADJ27511.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG ++++ELR + RP+++ AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTEKGAQQLREELRELKTVVRPKVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LE+ + A++ID+S + D R+ FG TV L+ + +K +YQIVGD EA+++ + Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLINIETDEKASYQIVGDLEANIKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GD I V AP G YEI + + Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGVILYEIAAIGY 157 >gi|157368727|ref|YP_001476716.1| transcription elongation factor GreA [Serratia proteamaculans 568] gi|157320491|gb|ABV39588.1| transcription elongation factor GreA [Serratia proteamaculans 568] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTLFGAEKLREELEYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+AR LIGKE+ D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPMARGLIGKEVDDVVVIKTPGGDVDYEILKVDYL 158 >gi|325982668|ref|YP_004295070.1| transcription elongation factor GreA [Nitrosomonas sp. AL212] gi|325532187|gb|ADZ26908.1| transcription elongation factor GreA [Nitrosomonas sp. AL212] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 109/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G + +++EL + RP +I AI+EARA+GDLSENAEY AAKE Q EGR+A Sbjct: 4 IPLTVAGAEALRKELHDMKTIHRPAVIAAIAEARAHGDLSENAEYDAAKEKQGFIEGRIA 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ ++ A++I+ + ++ D FGATV L + + + YQIVGD EA+++ G +SIS Sbjct: 64 ELESKLSSAQIINPALINADGACVFGATVELEDLQNSEVVTYQIVGDDEANIKDGKISIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI+RALIGK GDI V+AP G + YEIL V +I Sbjct: 124 SPISRALIGKYAGDIAEVHAPSGIREYEILDVKYI 158 >gi|225075463|ref|ZP_03718662.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens NRL30031/H210] gi|224953281|gb|EEG34490.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens NRL30031/H210] Length = 162 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162 >gi|300918939|ref|ZP_07135497.1| transcription elongation factor GreA [Escherichia coli MS 115-1] gi|300413935|gb|EFJ97245.1| transcription elongation factor GreA [Escherichia coli MS 115-1] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+ + +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTGLNLDSDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|188532495|ref|YP_001906292.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99] gi|188027537|emb|CAO95384.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99] Length = 160 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTQMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ YEI++V ++ Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYEIVKVEYL 160 >gi|123440804|ref|YP_001004795.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087765|emb|CAL10551.1| transcription elongation factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607370|emb|CBY28868.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica Y11] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILTVDYV 158 >gi|292493676|ref|YP_003529115.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4] gi|291582271|gb|ADE16728.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 108/155 (69%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T KG ++++EL+ + RPR++ AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 3 KVPLTEKGAQQLREELQELKTVVRPRVVAAIAEARAHGDLKENAEYHAAREEQGFVEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +LE+ + A++ID++ + D R+ FG TV LV ++ + +YQIVGD EAD++ +S+ Sbjct: 63 RDLEHQLAHAQIIDVNKLQKDGRVVFGVTVDLVNMDTDGEVSYQIVGDLEADIKENKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIARALIGK GD + V AP G YEI V + Sbjct: 123 NSPIARALIGKREGDEVQVQAPSGVVIYEIAAVCY 157 >gi|94676760|ref|YP_589063.1| transcription elongation factor GreA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384107|sp|Q1LSK1|GREA_BAUCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|94219910|gb|ABF14069.1| transcription elongation factor GreA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + + RP II+ I+EAR YGDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEQLREELNYLKNVRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + ++ FG TVS+ N +++ Y+IVGD EA+ + L+ Sbjct: 61 RIQEIESKLSHAQIIDVTKLFPSGKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK+ GDI+ + P GE Y+IL++ ++ Sbjct: 121 SISSPIARGLIGKKKGDIVLIKTPRGEVKYQILKIEYL 158 >gi|301025974|ref|ZP_07189457.1| transcription elongation factor GreA [Escherichia coli MS 196-1] gi|299879900|gb|EFI88111.1| transcription elongation factor GreA [Escherichia coli MS 196-1] Length = 158 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ F ATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFCATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|50119643|ref|YP_048810.1| transcription elongation factor GreA [Pectobacterium atrosepticum SCRI1043] gi|49610169|emb|CAG73609.1| transcription elongation factor [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 2/155 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ + Sbjct: 5 PMTLRGAEKLREELDHLKSVRRPEIITAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +E ++ A++ID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 65 IEAKLSNAQIIDVTKMAANNGRVIFGATVAVMNLDSEEEQTYRIVGDDEADFKQNLISVN 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 125 SPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159 >gi|291616001|ref|YP_003518743.1| GreA [Pantoea ananatis LMG 20103] gi|291151031|gb|ADD75615.1| GreA [Pantoea ananatis LMG 20103] gi|327396252|dbj|BAK13674.1| transcription elongation factor GreA [Pantoea ananatis AJ13355] Length = 158 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ + PGG+ YEIL+V +I Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYI 158 >gi|322514696|ref|ZP_08067723.1| transcription elongation factor GreA [Actinobacillus ureae ATCC 25976] gi|322119345|gb|EFX91458.1| transcription elongation factor GreA [Actinobacillus ureae ATCC 25976] Length = 158 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + I++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELIREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMVNNGKVIFGATVGLVNADTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIISVEYI 158 >gi|194098470|ref|YP_002001530.1| transcription elongation factor GreA [Neisseria gonorrhoeae NCCP11945] gi|291043955|ref|ZP_06569671.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2] gi|293399156|ref|ZP_06643321.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62] gi|193933760|gb|ACF29584.1| GreA [Neisseria gonorrhoeae NCCP11945] gi|291012418|gb|EFE04407.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2] gi|291610570|gb|EFF39680.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62] gi|317164152|gb|ADV07693.1| transcription elongation factor GreA [Neisseria gonorrhoeae TCDC-NG08107] Length = 174 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 17 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 76 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 77 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 136 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 137 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 174 >gi|148263922|ref|YP_001230628.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4] gi|146397422|gb|ABQ26055.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4] Length = 158 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPLTKESYEFLQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELSDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157 >gi|92115199|ref|YP_575127.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] gi|91798289|gb|ABE60428.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] Length = 158 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G K+++EL + EERPR+I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPMTVAGEQKLREELEQLKGEERPRVINAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G + Sbjct: 61 RIQEIESKLSASQVIDVTKLPKTGKVIFGVTVDLINLHNDEEVRYRIVGEDEADIKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S++SPIARALIGKE GD + V PGG+ YEI V Sbjct: 121 SVTSPIARALIGKEEGDTVLVRTPGGDVEYEIAGV 155 >gi|237730101|ref|ZP_04560582.1| transcription elongation factor GreA [Citrobacter sp. 30_2] gi|283836273|ref|ZP_06356014.1| transcription elongation factor GreA [Citrobacter youngae ATCC 29220] gi|226908707|gb|EEH94625.1| transcription elongation factor GreA [Citrobacter sp. 30_2] gi|291067636|gb|EFE05745.1| transcription elongation factor GreA [Citrobacter youngae ATCC 29220] Length = 158 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE YE+ +V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL 158 >gi|115377193|ref|ZP_01464405.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|310821199|ref|YP_003953557.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|115365776|gb|EAU64799.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|309394271|gb|ADO71730.1| Transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] Length = 169 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 107/155 (69%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q E Sbjct: 1 MSGNIPMTPSGLRKLKEELKQLQTVERGKISREIEVARAHGDLRENAEYHAAKEKQGHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ +L + I RAEVID S + GD++ FGATV L++ + Y+IVG+ EAD++ + Sbjct: 61 GRILDLNDWIARAEVIDTSKLKGDKVVFGATVVLLDSETDKTVTYRIVGELEADIKKRWL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++SP+ARALIGK +GD+ V +PGGE+ YE+ ++ Sbjct: 121 AVTSPVARALIGKGVGDVALVRSPGGEREYEVQEI 155 >gi|15677289|ref|NP_274442.1| transcription elongation factor [Neisseria meningitidis MC58] gi|25453012|sp|Q9JYU3|GREA_NEIMB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7226670|gb|AAF41791.1| transcription elongation factor GreA [Neisseria meningitidis MC58] gi|325140625|gb|EGC63145.1| transcription elongation factor greA [Neisseria meningitidis CU385] gi|325199954|gb|ADY95409.1| transcription elongation factor greA [Neisseria meningitidis H44/76] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|319793964|ref|YP_004155604.1| transcription elongation factor grea [Variovorax paradoxus EPS] gi|315596427|gb|ADU37493.1| transcription elongation factor GreA [Variovorax paradoxus EPS] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL + ERP +I AISEARA GDLSENAEY+ AK+ Q EGR+ Sbjct: 4 IPITKRGAEKLRAELHQLKTVERPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID S + +G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL++IS Sbjct: 64 EVEGKLSAAQIIDPSELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLINIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGG K YEI+ V ++ Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYL 158 >gi|71891884|ref|YP_277614.1| transcription elongation factor GreA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747831|sp|Q493U4|GREA_BLOPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71795990|gb|AAZ40741.1| transcription elongation factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +K+++EL + + RP IIK ISEAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ + A +IDI+ ++ D++ FGATV + ++ ++ Y IVGD EA+++ ++SI Sbjct: 63 QEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTTYRQTYSIVGDDEANLKEHMISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIG + GDI+ +N P G+ Y+ILQV + Sbjct: 123 NSPIARGLIGHKEGDIVRINTPKGKVRYKILQVKYC 158 >gi|259907033|ref|YP_002647389.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96] gi|224962655|emb|CAX54110.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96] gi|283476829|emb|CAY72667.1| Transcription elongation factor greA [Erwinia pyrifoliae DSM 12163] gi|310766245|gb|ADP11195.1| Transcription elongation factor GreA [Erwinia sp. Ejp617] Length = 160 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ Y+I++V ++ Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYDIIKVEYL 160 >gi|240014222|ref|ZP_04721135.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI18] gi|240080847|ref|ZP_04725390.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA19] gi|240115541|ref|ZP_04729603.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID18] gi|240117836|ref|ZP_04731898.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID1] gi|240121785|ref|ZP_04734747.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID24-1] gi|240125640|ref|ZP_04738526.1| transcription elongation factor GreA [Neisseria gonorrhoeae SK-92-679] gi|268596964|ref|ZP_06131131.1| transcription elongation factor [Neisseria gonorrhoeae FA19] gi|268601215|ref|ZP_06135382.1| transcription elongation factor [Neisseria gonorrhoeae PID18] gi|268603535|ref|ZP_06137702.1| transcription elongation factor [Neisseria gonorrhoeae PID1] gi|268684227|ref|ZP_06151089.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679] gi|268550752|gb|EEZ45771.1| transcription elongation factor [Neisseria gonorrhoeae FA19] gi|268585346|gb|EEZ50022.1| transcription elongation factor [Neisseria gonorrhoeae PID18] gi|268587666|gb|EEZ52342.1| transcription elongation factor [Neisseria gonorrhoeae PID1] gi|268624511|gb|EEZ56911.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYGIIEVRYI 158 >gi|302037858|ref|YP_003798180.1| transcription elongation factor GreA [Candidatus Nitrospira defluvii] gi|300605922|emb|CBK42255.1| Transcription elongation factor GreA [Candidatus Nitrospira defluvii] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG++ ++ EL + ERPR+I+AI+EARA+GDLSENAEY AAKE Q E R+AE Sbjct: 4 PITRKGYEALKAELDRLHKVERPRVIEAIAEARAHGDLSENAEYDAAKERQGFIEARLAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + +IDI+ + + + FGATV L+E+ + KK Y +VG EAD++ +S+ SP Sbjct: 64 LKGKLADCRIIDIAGRTSETVVFGATVVLIEQEAQAKKQYTLVGQDEADLKFSRISVQSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RALIGK +GD++ V P YE++++ + Sbjct: 124 VGRALIGKRVGDMVEVTTPAKIVEYEVMEIRF 155 >gi|58699052|ref|ZP_00373893.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila ananassae] gi|225630273|ref|YP_002727064.1| transcription elongation factor GreA [Wolbachia sp. wRi] gi|58534429|gb|EAL58587.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila ananassae] gi|225592254|gb|ACN95273.1| transcription elongation factor GreA [Wolbachia sp. wRi] Length = 164 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ +Q EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFENMQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSGDKKN-YQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV S++ N+G+ + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVMFGATVTLSMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|254428856|ref|ZP_05042563.1| transcription elongation factor GreA subfamily [Alcanivorax sp. DG881] gi|196195025|gb|EDX89984.1| transcription elongation factor GreA subfamily [Alcanivorax sp. DG881] Length = 153 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q EGR+ ++ Sbjct: 1 MTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCEGRIGDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDI T+ ++ FG TV++++ ++ + K YQIVGD EA+++ G +S++SP Sbjct: 61 EGKLSNAQIIDIQTIENTGKVIFGVTVTIIDVDTDETKVYQIVGDDEANIKEGKLSVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIG+E GD++ ++ PGG + YE+ QV I Sbjct: 121 IARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 153 >gi|316984555|gb|EFV63520.1| transcription elongation factor GreA domain protein [Neisseria meningitidis H44/76] Length = 173 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|99034137|ref|ZP_01314235.1| hypothetical protein Wendoof_01000975 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 164 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ IQ EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFEDIQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSL--VEKNSGDKKN-YQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N+G+ + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|192360133|ref|YP_001983144.1| transcription elongation factor [Cellvibrio japonicus Ueda107] gi|190686298|gb|ACE83976.1| transcription elongation factor [Cellvibrio japonicus Ueda107] Length = 159 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G +K++ EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ E Sbjct: 1 MSTKFPMTITGAEKLRLELEDLKKVQRPRIVQAIAEAREHGDLKENAEYSAAREQQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A++ID++T+ ++ FG TV+++ + YQIVGD EA+V++ Sbjct: 61 GRIKEIEGKLSNAQIIDVTTIPHTGKVIFGTTVTIINIETEQALTYQIVGDDEAEVKANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S++SPIARAL+GKE GD++ V APGG+ YEI +V Sbjct: 121 ISVNSPIARALVGKEEGDVVIVRAPGGDVEYEIDKV 156 >gi|238755147|ref|ZP_04616493.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473] gi|238706594|gb|EEP98965.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473] Length = 158 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G D++++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTIRGADQLREELDYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ F +TV+++ ++ +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFASTVTVLNLDTEEQQTYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGG+ +EIL+V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGDVEFEILKVEYL 158 >gi|298368446|ref|ZP_06979764.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014 str. F0314] gi|298282449|gb|EFI23936.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014 str. F0314] Length = 158 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE ++ A +I+ + + + +I FG+TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RISELEYKLSVAHIINPAEIHAEGKIVFGSTVTLEDMETEEQVTYQIVGEDEADIKEHKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVEYI 158 >gi|103486475|ref|YP_616036.1| transcription elongation factor GreA [Sphingopyxis alaskensis RB2256] gi|123253395|sp|Q1GUG9|GREA_SPHAL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|98976552|gb|ABF52703.1| transcription elongation factor GreA [Sphingopyxis alaskensis RB2256] Length = 158 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 112/157 (71%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ ++G++K+ +L + E RP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKVPMLAEGYEKLTAQLAALKAE-RPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ ++RA+VID +T+SGDRI FGATV+L +++ K YQIVG EAD ++G +S Sbjct: 63 TIGDLEDKLSRAQVIDPTTLSGDRIVFGATVTLTDEDDKPVK-YQIVGQAEADAKAGKIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+ + D I V P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRRVDDEIEVTVPSGDKYYLVTKIEFI 158 >gi|238761759|ref|ZP_04622733.1| Transcription elongation factor greA [Yersinia kristensenii ATCC 33638] gi|238699873|gb|EEP92616.1| Transcription elongation factor greA [Yersinia kristensenii ATCC 33638] Length = 158 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FG+TV ++ S +++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|114330476|ref|YP_746698.1| transcription elongation factor GreA [Nitrosomonas eutropha C91] gi|114307490|gb|ABI58733.1| transcription elongation factor GreA [Nitrosomonas eutropha C91] Length = 158 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T G +K++ EL + RP II AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNAIPITQSGAEKLRAELHEMKTVHRPAIIAAIAEARSHGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++I+ + ++ D FGATV LV+ ++ YQ+VGD EAD++ G + Sbjct: 61 RIAELESKLSNAQIINPAALNADGACVFGATVDLVDLDTNTAVTYQVVGDDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ V APGG + YEIL V +I Sbjct: 121 SISSPIARALIGKYAGDVAEVQAPGGIREYEILDVKYI 158 >gi|308050593|ref|YP_003914159.1| transcription elongation factor GreA [Ferrimonas balearica DSM 9799] gi|307632783|gb|ADN77085.1| transcription elongation factor GreA [Ferrimonas balearica DSM 9799] Length = 158 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T +G + +++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q L E R+ Sbjct: 3 QVPMTVRGAELLREELDYLKHTRRPKITEAIAAARELGDLKENAEYHAAREEQGLTEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E+ ++ A++ID++ + + RI FGAT +L+ S + Y+IVGD EAD+++GL+S+ Sbjct: 63 RDIESKLSVAQIIDVTKIPNNGRIIFGATATLLNVESDQEVTYRIVGDDEADLKAGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARA+IGKEL D++ V AP G+ YE+++V ++ Sbjct: 123 NSPIARAMIGKELDDVLVVKAPSGDIEYEVVEVKYL 158 >gi|42520503|ref|NP_966418.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410242|gb|AAS14352.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 164 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ +Q EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFENMQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSL--VEKNSGDKKN-YQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N+G+ + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|197118284|ref|YP_002138711.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem] gi|197087644|gb|ACH38915.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem] Length = 158 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ + Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKQCKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPAGVKEYEIIEIRY 157 >gi|167855522|ref|ZP_02478284.1| transcription elongation factor GreA [Haemophilus parasuis 29755] gi|219871300|ref|YP_002475675.1| transcription elongation factor GreA [Haemophilus parasuis SH0165] gi|167853323|gb|EDS24575.1| transcription elongation factor GreA [Haemophilus parasuis 29755] gi|219691504|gb|ACL32727.1| transcription elongation factor GreA [Haemophilus parasuis SH0165] Length = 158 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G +++++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIISAITEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E+ + A++ID+ M + ++ FG+TV+L+ N+ + Y+IVGD EA+++ GL+S+ Sbjct: 63 KEIESKLGNAQIIDVKNMINTGKVIFGSTVTLLNVNTDECVTYRIVGDDEANIKDGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D + + PGG ++I++V +I Sbjct: 123 NSPIARGLVGKEIDDNVHIQTPGGNVEFDIIKVEYI 158 >gi|320540168|ref|ZP_08039823.1| putative transcription elongation factor [Serratia symbiotica str. Tucson] gi|320029834|gb|EFW11858.1| putative transcription elongation factor [Serratia symbiotica str. Tucson] Length = 158 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTLFGAEKLREELEYLKSVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ + R+ FGATVS++ +S ++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKIPNTGRVIFGATVSVLNLDSEEEVTYRIVGDDEADFKKNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|270265050|ref|ZP_06193313.1| transcription elongation factor GreA [Serratia odorifera 4Rx13] gi|270040984|gb|EFA14085.1| transcription elongation factor GreA [Serratia odorifera 4Rx13] Length = 158 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTLFGAEKLREELEYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+S+ Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|331007340|ref|ZP_08330536.1| Transcription elongation factor GreA [gamma proteobacterium IMCC1989] gi|330418856|gb|EGG93326.1| Transcription elongation factor GreA [gamma proteobacterium IMCC1989] Length = 153 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G D +Q EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+ E+ Sbjct: 1 MTKRGADALQAELDDLKKVQRPRIVQAIAEAREHGDLKENAEYHAAREQQSFCEGRLQEI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ +++IDI ++ R+ FG TVSL+ ++ +K YQIVGD EADV+ G +S++SP Sbjct: 61 EGKLSNSQIIDIMSLPCTGRVIFGVTVSLLNLDTDEKVTYQIVGDDEADVKQGKISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK GD +++ P GE YEI V I Sbjct: 121 IARGLIGKSEGDDVAIKTPSGEVEYEIEAVKHI 153 >gi|109898530|ref|YP_661785.1| transcription elongation factor GreA [Pseudoalteromonas atlantica T6c] gi|109700811|gb|ABG40731.1| transcription elongation factor GreA [Pseudoalteromonas atlantica T6c] Length = 158 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+KG + +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EGR+ + Sbjct: 5 PMTAKGAEMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ ++ID++ M+ ++ FG TV+++ S ++ Y+IVGD EAD+++ L+S+SS Sbjct: 65 IEGKLSNVQIIDVTKMTNTGKVIFGTTVTILNLQSDEEITYKIVGDDEADIKNNLISVSS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIAR LIGK+L D++++ P G +EI++V ++ Sbjct: 125 PIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158 >gi|239815600|ref|YP_002944510.1| transcription elongation factor GreA [Variovorax paradoxus S110] gi|239802177|gb|ACS19244.1| transcription elongation factor GreA [Variovorax paradoxus S110] Length = 158 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EGR+ Sbjct: 4 IPITKRGAEKLRAELHQLKTVDRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A++ID + + +G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL++IS Sbjct: 64 EVEGKLSAAQIIDPAELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLINIS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALIGKE GD V APGG K YEI+ V +I Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYI 158 >gi|119504338|ref|ZP_01626418.1| GreA/GreB family elongation factor [marine gamma proteobacterium HTCC2080] gi|119459846|gb|EAW40941.1| GreA/GreB family elongation factor [marine gamma proteobacterium HTCC2080] Length = 158 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++E+RPRII+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTVAGEQSLRDELDRLKREDRPRIIQAIAEAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E+ ++ A++ID+S + ++ FG TV L+ + + Y+IVG+ E+DV++ L+ Sbjct: 61 RIQDIEHKLSHAQIIDVSAIPNTGKVIFGTTVDLINTENDNPVTYRIVGEDESDVKANLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARAL+GK GD + V AP G+ YEI +V I Sbjct: 121 SVSSPIARALVGKSEGDEVVVKAPSGDIYYEIERVHHI 158 >gi|330813686|ref|YP_004357925.1| transcription elongation factor GreA [Candidatus Pelagibacter sp. IMCC9063] gi|327486781|gb|AEA81186.1| transcription elongation factor GreA [Candidatus Pelagibacter sp. IMCC9063] Length = 158 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/159 (49%), Positives = 107/159 (67%), Gaps = 3/159 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +KI+ EL R+ R +I+ AISEAR++GDL ENAEY AAKE Q LNE Sbjct: 1 MEKEPITIQGLEKIKSELDDRKHTTRSKIVMAISEARSHGDLKENAEYHAAKEEQGLNEK 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGL 119 R+ ELE I AEVIDI + D ++ F +T+ +V+ GDKKN Y+IVG EADV++GL Sbjct: 61 RIQELETSIAMAEVIDIRKIPNDNKVIFSSTI-IVKDLDGDKKNTYKIVGRDEADVKNGL 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ R IGK D + + P GEK +EIL V +I Sbjct: 120 IYYKSPLGRGFIGKNKEDFVVIETPSGEKNFEILDVKYI 158 >gi|304396338|ref|ZP_07378219.1| GreA/GreB family elongation factor [Pantoea sp. aB] gi|304355847|gb|EFM20213.1| GreA/GreB family elongation factor [Pantoea sp. aB] Length = 158 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158 >gi|149184452|ref|ZP_01862770.1| transcription elongation factor [Erythrobacter sp. SD-21] gi|148831772|gb|EDL50205.1| transcription elongation factor [Erythrobacter sp. SD-21] Length = 155 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+ ++G++K+ +L+ + E RPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MDKVPMLAEGYEKLTADLKVLRAE-RPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ I+RA++ID +T+SGD++ FGATV+L++++ K YQIVG EAD G +S Sbjct: 60 MIGDLEDKISRAQIIDPTTLSGDKVIFGATVTLLDEDDKPVK-YQIVGQTEADASKGRIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGK++ + + V P G+K Y I ++ +I Sbjct: 119 YTSPIARALIGKQVEEEVEVTVPSGDKFYLIDKIEFI 155 >gi|88657640|ref|YP_506961.1| transcription elongation factor GreA [Ehrlichia chaffeensis str. Arkansas] gi|88599097|gb|ABD44566.1| transcription elongation factor GreA [Ehrlichia chaffeensis str. Arkansas] Length = 162 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/163 (47%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T GF K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 1 MNARFPITKNGFAKLELELESLKHE-RPKIIKSISEARELGDLSENAEYHAARERQGLVE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ YQIVG+ EAD+ Sbjct: 60 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I Sbjct: 120 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162 >gi|308189104|ref|YP_003933235.1| Transcription elongation factor greA [Pantoea vagans C9-1] gi|308059614|gb|ADO11786.1| Transcription elongation factor greA [Pantoea vagans C9-1] Length = 158 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEEATYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158 >gi|253700924|ref|YP_003022113.1| transcription elongation factor GreA [Geobacter sp. M21] gi|251775774|gb|ACT18355.1| transcription elongation factor GreA [Geobacter sp. M21] Length = 158 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ + Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKLCKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGVKEYEIIEIRY 157 >gi|149194430|ref|ZP_01871527.1| transcription elongation factor GreA [Caminibacter mediatlanticus TB-2] gi|149135605|gb|EDM24084.1| transcription elongation factor GreA [Caminibacter mediatlanticus TB-2] Length = 162 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 73/154 (47%), Positives = 103/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMTKYGYEKLSKELEYLKTVARPEVAKEIDAARELGDLKENAEYHAAKEKQAHIERRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +I++RA V+D + DR++FG+TV LV+ +S ++ Y IVG EAD GL+S + Sbjct: 62 AELSDILSRAVVVDPKEHAHDRVSFGSTVYLVDLDSDEEFKYTIVGAPEADPDKGLISYN 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIGK +GD + VN P G K YEI ++ + Sbjct: 122 SPLAKALIGKHVGDEVEVNLPSGTKYYEIEKICF 155 >gi|309785509|ref|ZP_07680140.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 1617] gi|25321427|pir||D91136 transcription elongation factor GreA ECs4060 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25321434|pir||G85981 transcription elongation factor greA [similarity] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517796|gb|AAG58315.1|AE005547_1 transcription elongation factor: cleaves 3' nucleotide of paused mRNA [Escherichia coli O157:H7 str. EDL933] gi|606119|gb|AAA57982.1| greA [Escherichia coli str. K-12 substr. MG1655] gi|13363533|dbj|BAB37483.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. Sakai] gi|73857195|gb|AAZ89902.1| transcription elongation factor [Shigella sonnei Ss046] gi|81242643|gb|ABB63353.1| transcription elongation factor [Shigella dysenteriae Sd197] gi|81246992|gb|ABB67700.1| transcription elongation factor [Shigella boydii Sb227] gi|209758228|gb|ACI77426.1| transcription elongation factor GreA [Escherichia coli] gi|209758230|gb|ACI77427.1| transcription elongation factor GreA [Escherichia coli] gi|209758232|gb|ACI77428.1| transcription elongation factor GreA [Escherichia coli] gi|209758234|gb|ACI77429.1| transcription elongation factor GreA [Escherichia coli] gi|209758236|gb|ACI77430.1| transcription elongation factor GreA [Escherichia coli] gi|308926629|gb|EFP72105.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 1617] gi|323154395|gb|EFZ40596.1| transcription elongation factor GreA domain protein [Escherichia coli EPECa14] gi|323173559|gb|EFZ59188.1| transcription elongation factor GreA domain protein [Escherichia coli LT-68] gi|327251272|gb|EGE62961.1| transcription elongation factor GreA domain protein [Escherichia coli STEC_7v] Length = 153 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++ Sbjct: 1 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++SP Sbjct: 61 EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153 >gi|68171284|ref|ZP_00544685.1| Prokaryotic transcription elongation factor GreA [Ehrlichia chaffeensis str. Sapulpa] gi|67999299|gb|EAM85947.1| Prokaryotic transcription elongation factor GreA [Ehrlichia chaffeensis str. Sapulpa] Length = 166 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 78/163 (47%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T GF K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 5 MNARFPITKNGFAKLELELESLKHE-RPKIIKSISEARELGDLSENAEYHAARERQGLVE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ YQIVG+ EAD+ Sbjct: 64 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 123 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I Sbjct: 124 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166 >gi|332185724|ref|ZP_08387471.1| transcription elongation factor GreA domain protein [Sphingomonas sp. S17] gi|332014082|gb|EGI56140.1| transcription elongation factor GreA domain protein [Sphingomonas sp. S17] Length = 158 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ +G+DK+ Q+LR R +EERP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQEGYDKLTQDLR-RLKEERPQIVDAIEEARAHGDLSENAEYHAAKERQGQIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A++E+ ++RA++ID +SGD+I FGATV+L++++ K YQIVG EAD ++G +S Sbjct: 63 SIADIEDKLSRAQIIDPKDLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAKTGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++ + + V P G++ Y + ++ +I Sbjct: 122 YNSPLGRALIGRKVEEEVEVTVPSGDRYYLVSKIEFI 158 >gi|329297293|ref|ZP_08254629.1| GreA [Plautia stali symbiont] Length = 158 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG +K+++EL + +RPRII +I+EAR GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEARELGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTAMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V P G+ YE+L+V +I Sbjct: 121 SVNSPMARGLMGKEADDVAIVKTPSGDVEYEVLKVEYI 158 >gi|312884007|ref|ZP_07743724.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC BAA-2122] gi|309368465|gb|EFP96000.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC BAA-2122] Length = 157 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGELKLRDELD-RLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FGATV+L++ ++ D+K YQIVGD EAD++SGL+ Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGATVTLIDCDTEDEKTYQIVGDDEADIKSGLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGG++ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDSVQYI 157 >gi|33519573|ref|NP_878405.1| transcription elongation factor GreA [Candidatus Blochmannia floridanus] gi|33517236|emb|CAD83619.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Blochmannia floridanus] Length = 162 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K++++L + + RP IIK ISEAR +GDL EN+EY AA+E Q EG Sbjct: 5 IERIPMTQNGVEKLRKKLEYLKNVLRPEIIKNISEARKHGDLKENSEYHAAREQQGFCEG 64 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A +ID++ ++ + ++ FG TV + + ++ K+ Y+IVGD EA+ + ++ Sbjct: 65 RIQEIEFKLSNAYIIDVTKVAEEQKVVFGVTVCVEKLDTQSKQVYRIVGDDEANYKKNMI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR LIG +GDI+++N P G TY+I+Q+ ++ Sbjct: 125 SINSPIARGLIGNTIGDIVTINTPQGNITYKIIQIQYV 162 >gi|119944570|ref|YP_942250.1| transcription elongation factor GreA [Psychromonas ingrahamii 37] gi|189042245|sp|A1ST36|GREA_PSYIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119863174|gb|ABM02651.1| transcription elongation factor GreA [Psychromonas ingrahamii 37] Length = 159 Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G K++ EL+ + RPRI+KAI+EAR +GDL ENAEY AA+E Q EGR+ + Sbjct: 5 PMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A +IDI+ ++ + ++ FGATV++V + + Y+IVGD EA+++ L+S+SS Sbjct: 65 IEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLISVSS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+AR LIGK L D IS+ PGG YEI+ V +I Sbjct: 125 PLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI 158 >gi|77166029|ref|YP_344554.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC 19707] gi|254436361|ref|ZP_05049867.1| transcription elongation factor GreA subfamily [Nitrosococcus oceani AFC27] gi|123593533|sp|Q3J822|GREA_NITOC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|76884343|gb|ABA59024.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC 19707] gi|207088051|gb|EDZ65324.1| transcription elongation factor GreA subfamily [Nitrosococcus oceani AFC27] Length = 158 Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG ++++EL+ + RP+++ AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTEKGAQQLREELQELKTVVRPKVVTAIAEARAHGDLKENAEYHAAREEQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LE+ + A++ID+S + D R+ FG TV LV + ++ +YQIVGD EA+++ + Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEEASYQIVGDLEANIKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GD I V AP G YEI + + Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGIILYEIAAIGY 157 >gi|319956761|ref|YP_004168024.1| transcription elongation factor grea [Nitratifractor salsuginis DSM 16511] gi|319419165|gb|ADV46275.1| transcription elongation factor GreA [Nitratifractor salsuginis DSM 16511] Length = 161 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+ + K+ QEL + EER +I K I EARA GDL ENAEY AAKE Q L E Sbjct: 1 MQKEPMFESTYQKLSQELEQLKNEERAKIAKVIDEARALGDLKENAEYHAAKEKQGLMEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL++++ RA+VID S ++ R++FG+TV LV++++ ++ Y IVG QE+D GL+S Sbjct: 61 RIIELQDLLARAQVIDPSKLAHQRVSFGSTVVLVDQDTDEEVRYVIVGTQESDPSRGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+GKE G+ + + P G K ++I ++ + Sbjct: 121 IQSPMARALLGKEEGEEVELQLPSGRKHFDIEEIKY 156 >gi|262276837|ref|ZP_06054630.1| transcription elongation factor [alpha proteobacterium HIMB114] gi|262223940|gb|EEY74399.1| transcription elongation factor [alpha proteobacterium HIMB114] Length = 158 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T G KI+ EL R+ RP+I++AI+EAR++GDL ENAEY AAKE Q LNE Sbjct: 1 MDKQPITLSGLQKIRVELDDRKNNTRPKIVQAIAEARSHGDLKENAEYHAAKEEQGLNER 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I A VID++ + D++ FGAT+++ + + + Y+IVG EADV++GL+ Sbjct: 61 RIKELETTIATANVIDVTKLKKDDKVIFGATITVKDLETDKESKYKIVGKDEADVKNGLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ R IGK G+ + P GEK +EI V +I Sbjct: 121 FYQSPMGRGFIGKIKGEFAEIKTPSGEKNFEITNVQYI 158 >gi|77919210|ref|YP_357025.1| transcription elongation factor GreA [Pelobacter carbinolicus DSM 2380] gi|123770456|sp|Q3A452|GREA_PELCD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|77545293|gb|ABA88855.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM 2380] Length = 158 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 107/158 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T +G+ +Q EL+ + ERP++++ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPMTEEGYRSLQDELKHLIRVERPKVVQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + I RAEVI + D+I FGA+V+L + ++ + Y+IVG+ EAD++ G + Sbjct: 61 GRIKELNDKIARAEVIKPGDVVTDKIVFGASVTLFDVDTDSEVTYKIVGEDEADLKHGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+ RALIG L D + + P G K YE++ + ++ Sbjct: 121 SVTSPVGRALIGHRLDDEVRIKVPSGLKIYEVVNIAYM 158 >gi|262197389|ref|YP_003268598.1| transcription elongation factor GreA [Haliangium ochraceum DSM 14365] gi|262080736|gb|ACY16705.1| transcription elongation factor GreA [Haliangium ochraceum DSM 14365] Length = 169 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 108/158 (68%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK P+T G ++ +L+ ++ +RP KAI AR +GDLSENA+Y AAKE Q + E Sbjct: 1 MADKFPMTPSGHAWMKAQLKKLKEVDRPANAKAIEVARGHGDLSENADYDAAKEEQGMIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E E + +EVID + +SG+R+ FGATV++ + ++GD+ Y IVG+ EAD+++ + Sbjct: 61 ARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+++P+ARALIGK +GD V P G + +EI+ V W+ Sbjct: 121 SVTAPVARALIGKAIGDETQVQTPKGTRAFEIVDVKWL 158 >gi|213421313|ref|ZP_03354379.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 109/150 (72%), Gaps = 1/150 (0%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E Sbjct: 1 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 60 Query: 70 ITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR Sbjct: 61 LSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIAR 120 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158 LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 GLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 150 >gi|308272737|emb|CBX29341.1| Transcription elongation factor greA [uncultured Desulfobacterium sp.] Length = 155 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 108/155 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +G++ +++EL ++ ERP IKAI EARA+GDLSENAE+ AAK+ Q E Sbjct: 1 MDRIPITKRGYETLKKELEHLKKVERPGNIKAIEEARAHGDLSENAEFAAAKDRQAYLEC 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL I A+VID ++ DR FG TV L ++GD YQ+VG E+D+ G +S Sbjct: 61 RIGELSYKIGNADVIDPDSLPKDRAVFGCTVVLENIDTGDTIEYQLVGPDESDIGKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SSP+ A+IGK+ G+ I + APGG++ YE++++L Sbjct: 121 VSSPLGMAIIGKKSGEEIVLQAPGGKRFYELVEIL 155 >gi|257095281|ref|YP_003168922.1| transcription elongation factor GreA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047805|gb|ACV36993.1| transcription elongation factor GreA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +K++ EL + ERPR I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MSKIPLTVHGAEKLRAELHHLKTVERPRAIAAIAEARSHGDLSENAEYDAAKERQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A++ID + D R FGAT+ L ++ SG + +YQIVG+ EAD+++G + Sbjct: 61 RIKEVESKLANAQIIDPKLLDADGRCVFGATLELEDQESGSRVSYQIVGEDEADIKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GDI V APGG + YE+L V + Sbjct: 121 SINSPIARALIGKFAGDIAEVQAPGGVREYEVLNVRY 157 >gi|322831206|ref|YP_004211233.1| transcription elongation factor GreA [Rahnella sp. Y9602] gi|321166407|gb|ADW72106.1| transcription elongation factor GreA [Rahnella sp. Y9602] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 110/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +++++EL + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAERLREELDHLKSVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ A+VID++ M R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 EIEAKLSNAQVIDVTKMPATGRVIFGATVTVMNLDTEEEQKYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGG+ +E+L+V ++ Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEFEVLKVEYL 158 >gi|307637553|gb|ADN80003.1| Transcription elongation factor [Helicobacter pylori 908] gi|325996144|gb|ADZ51549.1| Transcription elongation factor [Helicobacter pylori 2018] gi|325997740|gb|ADZ49948.1| Transcription elongation factor [Helicobacter pylori 2017] Length = 164 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 106/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICTELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++G + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNGKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|160871787|ref|ZP_02061919.1| transcription elongation factor GreA [Rickettsiella grylli] gi|159120586|gb|EDP45924.1| transcription elongation factor GreA [Rickettsiella grylli] Length = 158 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +++EL + +RP++I AI+EAR++GDL ENAEY AAKE+Q EG Sbjct: 1 MKKIPMTISGAQYLKKELHQLKTLKRPQVIAAIAEARSHGDLKENAEYHAAKEMQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+EN + A++ID++ ++ ++ FG+T+ L+ ++ ++ YQIVG+ EAD++ + Sbjct: 61 RITEIENKLASAQIIDVTKLNNLGKVIFGSTIHLMNTHTHEQVTYQIVGEDEADIKHSKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD++ V P G I +V +I Sbjct: 121 SVASPIARALIGKEEGDLVEVQTPSGLVNLAIDKVEYI 158 >gi|297569319|ref|YP_003690663.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus AHT2] gi|296925234|gb|ADH86044.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus AHT2] Length = 161 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 114/155 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV++IP+T G +K++QEL Q+ ERPRII+AI AR +GDL ENAEY AAKE Q+ E Sbjct: 1 MVERIPMTRNGHEKLRQELNQLQRVERPRIIQAIETAREHGDLKENAEYHAAKERQSHVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ ++R+EVID S + +R+ FG V+LV+ ++ D+ YQ++G +EA V+ G + Sbjct: 61 GRIMELKDKLSRSEVIDCSALDCERVVFGVVVTLVDLDTDDEIRYQLLGPEEASVEDGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SP+ RA+IGK +GD + V PGG + +E++++ Sbjct: 121 SVLSPLGRAMIGKSVGDEVVVKTPGGIRQFEVMEI 155 >gi|88608560|ref|YP_506547.1| transcription elongation factor GreA [Neorickettsia sennetsu str. Miyayama] gi|123763706|sp|Q2GD99|GREA_NEOSM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|88600729|gb|ABD46197.1| transcription elongation factor GreA [Neorickettsia sennetsu str. Miyayama] Length = 159 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 111/154 (72%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G+ K+Q+EL + +P ++ A+++AR GDLSENAEY A++ Q+ EG++ Sbjct: 3 KLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEGKI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL+ ++ AEVID+S +G+R+ FGA+V+L S YQIVG+ E+D++ G +S+S Sbjct: 63 RELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKISVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI +A++ KE+G+I+ ++ P G+KTY+IL V + Sbjct: 123 SPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156 >gi|85858479|ref|YP_460681.1| transcription elongation factor [Syntrophus aciditrophicus SB] gi|123725222|sp|Q2LR03|GREA_SYNAS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|85721570|gb|ABC76513.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 161 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 106/154 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T GF+ +++EL + P IK I ARA+GDLSENAEY AAKE Q+ G Sbjct: 1 MEKMPITKSGFENLKKELEHLKCVLIPANIKDIEIARAHGDLSENAEYTAAKEKQSFLHG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ ELEN + + VID+ +S DRI FGATV + E ++G + NYQ+VG E+++ +S Sbjct: 61 KLQELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++SPI +ALIGK +GD + V+ PGG + +E++ + Sbjct: 121 VTSPIGKALIGKSIGDEVKVHTPGGIRNFEVVDI 154 >gi|146313249|ref|YP_001178323.1| transcription elongation factor GreA [Enterobacter sp. 638] gi|145320125|gb|ABP62272.1| transcription elongation factor GreA [Enterobacter sp. 638] Length = 158 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIISAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VIDI+ + R+ FGA+V ++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDITKIPNTGRVIFGASVKVLNLDNDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGKE D++ + PGGE +EI++V ++ Sbjct: 124 SPIARGLIGKEEEDVVVIRTPGGEVEFEIIKVEYL 158 >gi|254482448|ref|ZP_05095687.1| transcription elongation factor GreA subfamily [marine gamma proteobacterium HTCC2148] gi|214037139|gb|EEB77807.1| transcription elongation factor GreA subfamily [marine gamma proteobacterium HTCC2148] Length = 158 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 109/159 (68%), Gaps = 3/159 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++ ERPRI AI++AR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTVAGEAALRSELEHLKKVERPRISDAIADAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E ++ +VID++ T +G ++ FG TV L+ S + Y IVG+ EADV++ Sbjct: 61 RIMEIEGKLSNCQVIDVTQITRTG-KVIFGTTVDLINVESDETVTYTIVGEDEADVKNNR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S+ SPIARA+IGKE GD++ V APGG+ YEI QV I Sbjct: 120 ISVGSPIARAMIGKEEGDVVLVKAPGGDIEYEIDQVQHI 158 >gi|330721348|gb|EGG99423.1| Transcription elongation factor GreA [gamma proteobacterium IMCC2047] Length = 158 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ +G ++++EL + ERPRII+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKFPMSKQGELQLREELERLKTIERPRIIEAIAEARAHGDLKENAEYHAAREEQGFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ +S ++ FG TV L ++ + +YQIVG+ EAD++ + Sbjct: 61 RIQEIEGKLSNAQVIDVTAISNTGKVIFGVTVELENIDTEEVVSYQIVGEDEADMKQRKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI+SPIAR LIGK GD++ VN PGG YEI+ V Sbjct: 121 SITSPIARGLIGKVEGDVVGVNVPGGLVEYEIISV 155 >gi|108763574|ref|YP_631602.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622] gi|108467454|gb|ABF92639.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622] Length = 172 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 107/153 (69%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q+ EGR Sbjct: 6 DNIPMTPSGLRKLKEELKHLQSVERGKISREIEVARAHGDLRENAEYHAAKEKQSHIEGR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + I RAEVID + GD++ FGATV L++ + +Y++VG+ EAD++ +++ Sbjct: 66 ILTLNDWIARAEVIDPKKLGGDKVIFGATVDLLDTETDKPVSYRLVGEIEADLKKRWIAV 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SP+ARALIGK++GDI +V +PGG + E+ ++ Sbjct: 126 TSPVARALIGKKVGDIATVQSPGGVRELEVQEI 158 >gi|307546737|ref|YP_003899216.1| transcription elongation factor GreA [Halomonas elongata DSM 2581] gi|307218761|emb|CBV44031.1| transcription elongation factor GreA [Halomonas elongata DSM 2581] Length = 158 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 108/155 (69%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++ EL + E RP +I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD++ GL+ Sbjct: 61 RIQEIEGKLSNAQVIDVTKLPKTGKVIFGVTVGLINLDNDEEVTYRIVGEDEADIKVGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S++SPIARALIGKE G+ + V PGG+ YEI V Sbjct: 121 SVTSPIARALIGKEEGETVLVRTPGGDVEYEISSV 155 >gi|311695967|gb|ADP98840.1| protein containing prokaryotic transcription elongation factor GreA domain [marine bacterium HP15] Length = 153 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ EGR+ E+ Sbjct: 1 MTKAGETRLREELQKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIEGRIQEI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++T+ ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +SISSP Sbjct: 61 EGKLSAAQVIDVTTIENTGKVIFGTTVHLLNMDTDEQVIYKIVGEDEADIKAGKLSISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARAL+GK GD++++ P G YEI QV +I Sbjct: 121 IARALVGKSEGDVVAIRVPSGTVEYEIEQVEYI 153 >gi|317182174|dbj|BAJ59958.1| transcription elongation factor GreA [Helicobacter pylori F57] Length = 164 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID ST++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSTLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|303256868|ref|ZP_07342882.1| transcription elongation factor GreA [Burkholderiales bacterium 1_1_47] gi|330998883|ref|ZP_08322610.1| transcription elongation factor GreA [Parasutterella excrementihominis YIT 11859] gi|302860359|gb|EFL83436.1| transcription elongation factor GreA [Burkholderiales bacterium 1_1_47] gi|329576097|gb|EGG57616.1| transcription elongation factor GreA [Parasutterella excrementihominis YIT 11859] Length = 157 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T++G ++ EL+ + ++RP +++AI+EAR GDLSENAEY AA+E Q EGR+ Sbjct: 3 IPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGRIL 62 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ I + +VID ST+ + ++ F ATV++ + +G+++ QIVG+ E+D + G +S++ Sbjct: 63 ELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRISVA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD + V APGG YEI+ V +I Sbjct: 123 SPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI 157 >gi|254516627|ref|ZP_05128686.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3] gi|219675050|gb|EED31417.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3] Length = 154 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTAQGEKALRAELEQLKKVDRPRISQAIAEAREHGDLKENAEYHAAREQQSFAEGRIMDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++++ ++ FG TV L+ + + Y+IVGD EAD + L+S++SP Sbjct: 61 EGKLSHAQVIDVTSIPCTGKVIFGVTVDLINVENDESVVYRIVGDDEADARQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKE GD++ V APGG++ YEI QV + Sbjct: 121 IARALIGKEEGDVVVVRAPGGDREYEIDQVRHL 153 >gi|90409512|ref|ZP_01217553.1| transcription elongation factor greA (transcript cleavage factor) [Psychromonas sp. CNPT3] gi|90309381|gb|EAS37625.1| transcription elongation factor greA (transcript cleavage factor) [Psychromonas sp. CNPT3] Length = 159 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G +++EL + E RPRI+ AI+EAR +GDL ENAEY AA+E Q EGR+ + Sbjct: 5 PMTATGAAALRKELERLKNETRPRIVAAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A++IDI+ ++ + R+ FG TV++V + ++ Y+IVGD E+D++ L+S++S Sbjct: 65 IEAKLSHAQIIDINKLANNGRVIFGTTVTIVNVETDEEVTYKIVGDDESDIKLNLISVNS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIAR LIGK + D +++ PGG YEI+ V +I Sbjct: 125 PIARGLIGKMVDDELTIQTPGGAIEYEIINVQYI 158 >gi|296272431|ref|YP_003655062.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM 7299] gi|296096605|gb|ADG92555.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM 7299] Length = 161 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T+ G+ KI EL + + ERP + A+ EAR GDL ENAEY AAKE L + Sbjct: 1 MEKEPMTNVGYKKITGELDFLKSHERPETVIALEEARQLGDLKENAEYHAAKEKLKLIDV 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL ++++A +ID S++ DR++FG+TV LV ++ ++ Y IVG E++ + G++S Sbjct: 61 QIAELGAVLSKAVIIDPSSLPHDRVSFGSTVKLVNTDTDEEYEYSIVGGVESNAEKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+A+ L+GKE GD S PGG KT+E+L+V + Sbjct: 121 FNSPLAKQLMGKEEGDEFSATLPGGVKTFEVLEVFY 156 >gi|256823598|ref|YP_003147561.1| transcription elongation factor GreA [Kangiella koreensis DSM 16069] gi|256797137|gb|ACV27793.1| transcription elongation factor GreA [Kangiella koreensis DSM 16069] Length = 160 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T +G + +Q EL ++ +RP+++ AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNRVPMTVEGAEALQTELNELKKVKRPQVVAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLV--EKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ ++++D++ +S + ++ FG+TV L+ + N+ D+ Y+IVGD EAD++ Sbjct: 61 RIQEIEAKLSNSQIVDVTKISNNGKVIFGSTVILINMDDNNADEVQYKIVGDDEADIKKN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR LIGKE GDI ++ P G YEI +VL++ Sbjct: 121 KLSINSPIARGLIGKEEGDIANIQTPKGSVEYEIAEVLYL 160 >gi|255004667|ref|ZP_05279468.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Virginia] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 110/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 14 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 72 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EADV + Sbjct: 73 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 +SI SP+ +L+G+ GD + V P G+ K Y+I+++ ++ Sbjct: 133 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 172 >gi|56417186|ref|YP_154260.1| transcription elongation factor greA [Anaplasma marginale str. St. Maries] gi|222475551|ref|YP_002563968.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Florida] gi|254995354|ref|ZP_05277544.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Mississippi] gi|255003541|ref|ZP_05278505.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Puerto Rico] gi|56388418|gb|AAV87005.1| transcription elongation factor greA [Anaplasma marginale str. St. Maries] gi|222419689|gb|ACM49712.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Florida] Length = 174 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 110/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 16 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 74 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EADV + Sbjct: 75 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 134 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 +SI SP+ +L+G+ GD + V P G+ K Y+I+++ ++ Sbjct: 135 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 174 >gi|218885487|ref|YP_002434808.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226737010|sp|B8DJL8|GREA_DESVM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|218756441|gb|ACL07340.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 160 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++++G+D++ +EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R++ Sbjct: 4 IPISTEGYDRLMKELE-RLKSERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEARIS 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + + VI++ ++SGD++ FGATV + + +SG+ K Y ++G EAD G +S+ S Sbjct: 63 YIESRMAQFNVINLDSLSGDKVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTISVLS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+GKE GD I V+AP G +YEI+ V + Sbjct: 123 PVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155 >gi|170765496|ref|ZP_02900307.1| transcription elongation factor GreA [Escherichia albertii TW07627] gi|170124642|gb|EDS93573.1| transcription elongation factor GreA [Escherichia albertii TW07627] Length = 158 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/143 (47%), Positives = 104/143 (72%), Gaps = 1/143 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SPIAR LIGKE D++ + PGG Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGG 146 >gi|15640654|ref|NP_230283.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730110|ref|ZP_01682511.1| transcription elongation factor GreA [Vibrio cholerae V52] gi|147675665|ref|YP_001216128.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|153217134|ref|ZP_01950898.1| transcription elongation factor GreA [Vibrio cholerae 1587] gi|153801763|ref|ZP_01956349.1| transcription elongation factor GreA [Vibrio cholerae MZO-3] gi|153823554|ref|ZP_01976221.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|153827690|ref|ZP_01980357.1| transcription elongation factor GreA [Vibrio cholerae MZO-2] gi|153830955|ref|ZP_01983622.1| transcription elongation factor GreA [Vibrio cholerae 623-39] gi|227080815|ref|YP_002809366.1| transcription elongation factor GreA [Vibrio cholerae M66-2] gi|229505744|ref|ZP_04395254.1| transcription elongation factor GreA [Vibrio cholerae BX 330286] gi|229509223|ref|ZP_04398708.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|229512896|ref|ZP_04402363.1| transcription elongation factor GreA [Vibrio cholerae TMA 21] gi|229519568|ref|ZP_04409011.1| transcription elongation factor GreA [Vibrio cholerae RC9] gi|229520925|ref|ZP_04410347.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80] gi|229530439|ref|ZP_04419827.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)] gi|229608855|ref|YP_002879503.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236] gi|254292200|ref|ZP_04962968.1| transcription elongation factor GreA [Vibrio cholerae AM-19226] gi|297580760|ref|ZP_06942686.1| transcription elongation factor GreA [Vibrio cholerae RC385] gi|298500750|ref|ZP_07010553.1| transcription elongation factor GreA [Vibrio cholerae MAK 757] gi|9655069|gb|AAF93800.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628145|gb|EAX60677.1| transcription elongation factor GreA [Vibrio cholerae V52] gi|124113827|gb|EAY32647.1| transcription elongation factor GreA [Vibrio cholerae 1587] gi|124122728|gb|EAY41471.1| transcription elongation factor GreA [Vibrio cholerae MZO-3] gi|126518923|gb|EAZ76146.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|146317548|gb|ABQ22087.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|148873568|gb|EDL71703.1| transcription elongation factor GreA [Vibrio cholerae 623-39] gi|149737832|gb|EDM52737.1| transcription elongation factor GreA [Vibrio cholerae MZO-2] gi|150421881|gb|EDN13860.1| transcription elongation factor GreA [Vibrio cholerae AM-19226] gi|227008703|gb|ACP04915.1| transcription elongation factor GreA [Vibrio cholerae M66-2] gi|227012459|gb|ACP08669.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|229332212|gb|EEN97700.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)] gi|229342158|gb|EEO07154.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80] gi|229344257|gb|EEO09232.1| transcription elongation factor GreA [Vibrio cholerae RC9] gi|229350145|gb|EEO15098.1| transcription elongation factor GreA [Vibrio cholerae TMA 21] gi|229353795|gb|EEO18731.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|229357967|gb|EEO22884.1| transcription elongation factor GreA [Vibrio cholerae BX 330286] gi|229371510|gb|ACQ61933.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236] gi|297535176|gb|EFH74011.1| transcription elongation factor GreA [Vibrio cholerae RC385] gi|297540531|gb|EFH76589.1| transcription elongation factor GreA [Vibrio cholerae MAK 757] Length = 158 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 118/159 (74%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +S+ PGG K +EI +V ++ Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 158 >gi|190571574|ref|YP_001975932.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018976|ref|ZP_03334783.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357846|emb|CAQ55302.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995085|gb|EEB55726.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 164 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +V+K P+T +GF+ +Q EL + +EE+P II+AIS+AR GDLSENAEY AA+E + E Sbjct: 5 IVNKFPITREGFESMQVELE-KLKEEKPSIIQAISDARDQGDLSENAEYHAARERLSFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS---LVEKNSGDKKNYQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+ L + NS + Y+IVG EAD Sbjct: 64 GRIIEVESKLSHAEVIEVKNLSGDTVMFGATVTVSMLGDDNSEIEYVYKIVGGYEADASK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTDSPLGSALIGKKVGEYVEVIVPNGEKLYKIVKIEF 163 >gi|157736870|ref|YP_001489553.1| transcription elongation factor GreA [Arcobacter butzleri RM4018] gi|315636041|ref|ZP_07891300.1| transcription elongation factor GreA [Arcobacter butzleri JV22] gi|166987609|sp|A8ESG0|GREA_ARCB4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157698724|gb|ABV66884.1| transcription elongation factor GreA [Arcobacter butzleri RM4018] gi|315479697|gb|EFU70371.1| transcription elongation factor GreA [Arcobacter butzleri JV22] Length = 161 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 109/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G++K+ EL + ++ ERP + A+ EAR GDL ENAEY +AKE L + Sbjct: 1 MEKEPMTLAGYNKVTAELDFLKKTERPETVIALDEARQLGDLKENAEYHSAKEKLKLIDI 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL +I++A +ID +T+ DR++FG+T+ LV+ ++ ++ Y IVG E+ + G++S Sbjct: 61 QIAELNAVISKAVIIDPTTLPHDRVSFGSTIDLVDVDTDEEFTYTIVGGVESSAEKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+A+ L+GKE GD ++ PGG KT+EIL+V + Sbjct: 121 FNSPLAKQLMGKEAGDELNATLPGGAKTFEILKVYY 156 >gi|269958421|ref|YP_003328208.1| transcription elongation factor GreA [Anaplasma centrale str. Israel] gi|269848250|gb|ACZ48894.1| transcription elongation factor GreA [Anaplasma centrale str. Israel] Length = 166 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 111/160 (69%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 8 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EAD+ + Sbjct: 67 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQADSTGIMRYQIVGEYEADISKNM 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 +SI SP+ +L+G++ GD + V P G+ K Y+I+++ ++ Sbjct: 127 ISIKSPLVLSLLGRKEGDTVEVKTPRGDYKIYQIIKIEFV 166 >gi|157962891|ref|YP_001502925.1| transcription elongation factor GreA [Shewanella pealeana ATCC 700345] gi|157847891|gb|ABV88390.1| transcription elongation factor GreA [Shewanella pealeana ATCC 700345] Length = 158 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G ++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+ Sbjct: 4 VPMTIVGAAQLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVR 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A++ID++TM+ + R+ FG+TV++V ++ ++ Y+IVG+ EA+++ L+S+S Sbjct: 64 DIEGKLSHAQIIDVTTMANNGRVIFGSTVTIVNVDTDEEVTYRIVGEDEANIRENLLSVS 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGK L D IS+ PGG +EI++V +I Sbjct: 124 SPIARGLIGKSLDDEISIVTPGGTNDFEIIKVEYI 158 >gi|254797022|ref|YP_003081859.1| transcription elongation factor GreA [Neorickettsia risticii str. Illinois] gi|254590253|gb|ACT69615.1| transcription elongation factor GreA [Neorickettsia risticii str. Illinois] Length = 157 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 111/154 (72%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G+ K+Q+EL + +P +I A+++AR GDLSENAEY A++ Q+ EG++ Sbjct: 3 KLPITREGYCKLQEELEKLVKVVKPSVIAAVAQARELGDLSENAEYHEARKEQSFVEGKI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL+ ++ AEVID+S +G+R+ FGA+V+L + YQIVG+ E+D++ G +S+S Sbjct: 63 RELQLHLSEAEVIDVSQFTGERVKFGASVTLENMENESVLVYQIVGNLESDIKEGKISVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI +A++ KE+G+I+ ++ P G+KTY+IL V + Sbjct: 123 SPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156 >gi|32034024|ref|ZP_00134268.1| COG0782: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208420|ref|YP_001053645.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae L20] gi|165976363|ref|YP_001651956.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252987|ref|ZP_07339142.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245856|ref|ZP_07527941.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247932|ref|ZP_07529966.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250188|ref|ZP_07532146.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254829|ref|ZP_07536655.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259271|ref|ZP_07541000.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261432|ref|ZP_07543105.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097212|gb|ABN74040.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876464|gb|ABY69512.1| transcription elongation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648178|gb|EFL78379.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853216|gb|EFM85436.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855582|gb|EFM87751.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857787|gb|EFM89885.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862200|gb|EFM94168.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866638|gb|EFM98497.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868889|gb|EFN00693.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 158 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMANNGKVIFGATVSLVNADTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158 >gi|71278345|ref|YP_270131.1| transcription elongation factor GreA [Colwellia psychrerythraea 34H] gi|71144085|gb|AAZ24558.1| transcription elongation factor GreA [Colwellia psychrerythraea 34H] Length = 158 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G D + EL+ + E+RPRI+K I+ AR +GDL ENAEY AAKE Q EGR+ Sbjct: 3 KYPMTLRGSDLLHDELKILKTEKRPRIVKDIATAREHGDLKENAEYHAAKEEQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID++ + ++ FG TV+L+ ++ + YQIVGD EAD ++G +S+ Sbjct: 63 QDIEGRLCNAQVIDVTAIPNHGKVIFGTTVTLLNLDTEVEVTYQIVGDDEADFKTGRISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGKE+ I + PGG YEI+ V I Sbjct: 123 NSPIARGLIGKEVDSEIEITIPGGVVEYEIVSVEHI 158 >gi|317177306|dbj|BAJ55095.1| transcription elongation factor GreA [Helicobacter pylori F16] Length = 164 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ + + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLGNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FSSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156 >gi|224370120|ref|YP_002604284.1| GreA1 [Desulfobacterium autotrophicum HRM2] gi|223692837|gb|ACN16120.1| GreA1 [Desulfobacterium autotrophicum HRM2] Length = 175 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 111/156 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++D+IP+T +G+ +++EL+ + ERP+ IKAI ARA+GDLSENAE+ AAK+ Q+ E Sbjct: 20 ILDQIPITIEGYAALKEELQRLKTIERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIE 79 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL I A++ID +T+S D + F + V + +SG++ Y IVG +E+D+ G + Sbjct: 80 GRIGELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKI 139 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+SSP+ AL+GK+ GD I + APGG++ YEI+ +L Sbjct: 140 SVSSPLGMALLGKQPGDEIVIQAPGGKRNYEIVDIL 175 >gi|148553363|ref|YP_001260945.1| transcription elongation factor GreA [Sphingomonas wittichii RW1] gi|229485908|sp|A5V3E1|GREA_SPHWW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148498553|gb|ABQ66807.1| transcription elongation factor GreA [Sphingomonas wittichii RW1] Length = 158 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/157 (47%), Positives = 112/157 (71%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G + +EL R + ERP II AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 IEKLPMLAEGQKMLTEEL-ARLKAERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A++E+ ++RA+VID S +SGD+I FGATV+L++ + + YQIVG EAD ++G +S Sbjct: 63 SIADIEDRLSRAQVIDPSMLSGDKIVFGATVTLLDDDEKPVR-YQIVGQTEADAKTGKIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIGK++ D + V P G++ Y + ++ +I Sbjct: 122 YNSPLGRALIGKKVDDEVEVTVPSGDRFYLVSKIEFI 158 >gi|190150271|ref|YP_001968796.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251385|ref|ZP_07337562.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252570|ref|ZP_07534465.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256998|ref|ZP_07538774.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263610|ref|ZP_07545224.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915402|gb|ACE61654.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649739|gb|EFL79918.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859975|gb|EFM91993.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864482|gb|EFM96389.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871073|gb|EFN02803.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 158 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLGNAQIIDVTKMTNNGKVIFGATVSLVNADTEEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158 >gi|323492033|ref|ZP_08097198.1| transcription elongation factor GreA [Vibrio brasiliensis LMG 20546] gi|323313762|gb|EGA66861.1| transcription elongation factor GreA [Vibrio brasiliensis LMG 20546] Length = 157 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLREELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157 >gi|308184650|ref|YP_003928783.1| transcription elongation factor GreA [Helicobacter pylori SJM180] gi|308060570|gb|ADO02466.1| transcription elongation factor GreA [Helicobacter pylori SJM180] gi|317014274|gb|ADU81710.1| transcription elongation factor GreA [Helicobacter pylori Gambia94/24] Length = 164 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|317011079|gb|ADU84826.1| transcription elongation factor GreA [Helicobacter pylori SouthAfrica7] Length = 164 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ +++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSVLTHHKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|188527289|ref|YP_001909976.1| transcription elongation factor GreA [Helicobacter pylori Shi470] gi|238691911|sp|B2USW4|GREA_HELPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|188143529|gb|ACD47946.1| transcription elongation factor GreA [Helicobacter pylori Shi470] gi|308062190|gb|ADO04078.1| transcription elongation factor GreA [Helicobacter pylori Cuz20] Length = 164 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPSKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|21672645|ref|NP_660712.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008517|sp|Q8K9G6|GREA_BUCAP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21623280|gb|AAM67923.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 159 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++ IP+T +G +K+++EL + +RPRI I+EAR +GDL ENAEY +A+E Q+ E Sbjct: 1 MINLIPMTVRGAEKLREELEQLKNVKRPRITVQIAEARKHGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ ++ +++IDI+ +S D R+ FG+TV+++ + YQIVGD E+D + L Sbjct: 61 GRIQEIESKLSNSQIIDITKISNDGRVVFGSTVTILNIKNNAVFTYQIVGDDESDFKKNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SP++R LIGK + I ++ P G Y+IL++ +I Sbjct: 121 ISINSPMSRGLIGKTVNTIAIIHTPSGNVKYKILKIDYI 159 >gi|254787219|ref|YP_003074648.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901] gi|237686435|gb|ACR13699.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901] Length = 158 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL ++ +RP+I AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KYPMTVEGEKALREELDHLKKVQRPKITAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VIDIS M G+++ FG TV L+ + ++ +Y+IVG+ EA+++ +S+ Sbjct: 63 QDIEAKLSNAQVIDISKMPVGEKVIFGVTVRLINVETDEEISYKIVGEDEANLKLNKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARAL+GKE+GD+ V APGG+ YEI V I Sbjct: 123 TSPIARALVGKEVGDVALVKAPGGDIEYEIDAVSHI 158 >gi|332140822|ref|YP_004426560.1| Transcription elongation factor GreA [Alteromonas macleodii str. 'Deep ecotype'] gi|327550844|gb|AEA97562.1| Transcription elongation factor GreA [Alteromonas macleodii str. 'Deep ecotype'] Length = 153 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M ++ FG TV+++ +S ++ Y+IVGD EAD+++ L+S++SP Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDSDEETTYRIVGDDEADIKNNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D +++ P G EI++V +I Sbjct: 121 IARGLIGKELDDTVTIQTPSGTVEVEIIEVEYI 153 >gi|323495923|ref|ZP_08100991.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326] gi|323319139|gb|EGA72082.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326] Length = 157 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157 >gi|254508242|ref|ZP_05120366.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Vibrio parahaemolyticus 16] gi|219548859|gb|EED25860.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Vibrio parahaemolyticus 16] Length = 157 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEKQLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDVDTDEEKRYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGG++ +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAISTPGGDRDFEIDRVEYI 157 >gi|46581647|ref|YP_012455.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. Hildenborough] gi|120601195|ref|YP_965595.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4] gi|81566039|sp|Q725M4|GREA_DESVH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200661|sp|A1V9Q2|GREA_DESVV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|46451070|gb|AAS97715.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. Hildenborough] gi|120561424|gb|ABM27168.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4] gi|311235288|gb|ADP88142.1| GreA/GreB family elongation factor [Desulfovibrio vulgaris RCH1] Length = 163 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 110/154 (71%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +GF ++++EL R ++ERP +I+AI EAR GDLSENA Y AA+E Q + E R+ Sbjct: 4 IPISVEGFKQLEKELD-RLKKERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEARIK 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + + VID+ T+SGD++ FGATV + + SG++K Y ++G EAD G +S+ S Sbjct: 63 YIESRMAQFNVIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSISVQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARA++GKE GD I V+AP G+ YEI+ + ++ Sbjct: 123 PVARAMLGKEEGDEIVVDAPRGKIHYEIVSIRFL 156 >gi|301061737|ref|ZP_07202478.1| transcription elongation factor GreA [delta proteobacterium NaphS2] gi|300444197|gb|EFK08221.1| transcription elongation factor GreA [delta proteobacterium NaphS2] Length = 155 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 107/154 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +K++ EL + ++ E+P I+AI+EARA+GDLSENAEY AAKE Q L Sbjct: 1 MEKMPITKDGLEKLKSELVYLEKTEKPNNIQAIAEARAHGDLSENAEYHAAKEKQGLIAA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ EL+N I +AE+ID++ DR+ FG TV L + + + YQ+VG E+D ++G +S Sbjct: 61 KINELQNAIGQAEIIDVNDGPMDRVVFGRTVLLYDIQNDKEITYQLVGPYESDPENGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SP+ R LIG+E+GD + + P G +E+L++ Sbjct: 121 IKSPLGRGLIGREIGDEVKIKTPRGVLEFEVLEI 154 >gi|213027547|ref|ZP_03341994.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 145 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 105/145 (72%), Gaps = 1/145 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E ++ A+ Sbjct: 1 MREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 60 Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGK Sbjct: 61 VIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGK 120 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 E D++ + PGG+ YE+L+V ++ Sbjct: 121 EQDDVVVIKTPGGDVEYEVLKVEYL 145 >gi|322380197|ref|ZP_08054428.1| transcription elongation factor GreA [Helicobacter suis HS5] gi|321147363|gb|EFX42032.1| transcription elongation factor GreA [Helicobacter suis HS5] Length = 161 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 104/154 (67%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQAFIEARI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++L+GK GD ++V P GE +EIL + + Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155 >gi|308063340|gb|ADO05227.1| transcription elongation factor GreA [Helicobacter pylori Sat464] Length = 164 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|326796869|ref|YP_004314689.1| transcription elongation factor GreA [Marinomonas mediterranea MMB-1] gi|326547633|gb|ADZ92853.1| transcription elongation factor GreA [Marinomonas mediterranea MMB-1] Length = 158 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G ++++EL + RPR+I I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KVPMTLEGESRLREELNHLKSVVRPRVIADIAEAREHGDLKENAEYHAAREEQGFTEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++VIDI +M ++ FGATV+L ++ + YQIVGD EADV+ +S Sbjct: 63 KEIEGKLADSQVIDIKSMPHTGKVIFGATVTLYNVDTEETVTYQIVGDDEADVKQKKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIA+A+IGK D IS+N P GE YEI +V +I Sbjct: 123 ASPIAKAIIGKHEEDEISINVPSGEVVYEIEKVEYI 158 >gi|261837908|gb|ACX97674.1| transcription elongation factor [Helicobacter pylori 51] gi|317180628|dbj|BAJ58414.1| transcription elongation factor GreA [Helicobacter pylori F32] gi|332673330|gb|AEE70147.1| transcription elongation factor GreA [Helicobacter pylori 83] Length = 164 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|239995761|ref|ZP_04716285.1| Transcription elongation factor GreA [Alteromonas macleodii ATCC 27126] Length = 153 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD+++ L+S++SP Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKNNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D++++ P G EI++V +I Sbjct: 121 IARGLIGKELDDMVTIQTPAGAVEVEIIEVEYI 153 >gi|127513765|ref|YP_001094962.1| transcription elongation factor GreA [Shewanella loihica PV-4] gi|126639060|gb|ABO24703.1| transcription elongation factor GreA [Shewanella loihica PV-4] Length = 158 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + + E+RP+I +AI AR GDL ENAEY AA+E Q L E Sbjct: 1 MNKVPMTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M R+ FG TV+++ +S ++ Y+IVG+ EAD+++ L+ Sbjct: 61 RVRDIEGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDEADIKANLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI V +I Sbjct: 121 SVTSPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEYI 158 >gi|332993759|gb|AEF03814.1| transcription elongation factor GreA [Alteromonas sp. SN2] Length = 158 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ + Sbjct: 5 PMTAHGAQLLRDELNELKTKTRPRIIQSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD++ +S++S Sbjct: 65 IEGKLSNAQIIDVTKMENKGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKQNRISVNS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIAR LIGKEL D++++ P G EI++V +I Sbjct: 125 PIARGLIGKELDDMVTIQTPAGSVEVEIIEVQYI 158 >gi|108563274|ref|YP_627590.1| transcription elongation factor GreA [Helicobacter pylori HPAG1] gi|207092077|ref|ZP_03239864.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_AG0C1] gi|208434775|ref|YP_002266441.1| transcription elongation factor [Helicobacter pylori G27] gi|210135059|ref|YP_002301498.1| transcription elongation factor GreA [Helicobacter pylori P12] gi|123373738|sp|Q1CT06|GREA_HELPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238058234|sp|B6JM90|GREA_HELP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238058235|sp|B5Z7M6|GREA_HELPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|107837047|gb|ABF84916.1| transcription elongation factor [Helicobacter pylori HPAG1] gi|208432704|gb|ACI27575.1| transcription elongation factor [Helicobacter pylori G27] gi|210133027|gb|ACJ08018.1| transcription elongation factor [Helicobacter pylori P12] gi|317009127|gb|ADU79707.1| transcription elongation factor GreA [Helicobacter pylori India7] gi|317012671|gb|ADU83279.1| transcription elongation factor GreA [Helicobacter pylori Lithuania75] Length = 164 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|322379587|ref|ZP_08053924.1| transcription elongation factor GreA [Helicobacter suis HS1] gi|321147981|gb|EFX42544.1| transcription elongation factor GreA [Helicobacter suis HS1] Length = 161 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 104/154 (67%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQVFIEARI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++L+GK GD ++V P GE +EIL + + Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155 >gi|217034498|ref|ZP_03439909.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10] gi|216943039|gb|EEC22518.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10] gi|315586469|gb|ADU40850.1| transcription elongation factor GreA [Helicobacter pylori 35A] gi|317178776|dbj|BAJ56564.1| transcription elongation factor GreA [Helicobacter pylori F30] Length = 164 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156 >gi|15611867|ref|NP_223518.1| transcription elongation factor GreA [Helicobacter pylori J99] gi|15645485|ref|NP_207660.1| transcription elongation factor GreA [Helicobacter pylori 26695] gi|254779167|ref|YP_003057272.1| transcription elongation factor GreA [Helicobacter pylori B38] gi|54037216|sp|P64276|GREA_HELPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041324|sp|P64275|GREA_HELPY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2313994|gb|AAD07908.1| transcription elongation factor GreA (greA) [Helicobacter pylori 26695] gi|4155364|gb|AAD06376.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR) [Helicobacter pylori J99] gi|254001078|emb|CAX29025.1| Transcription elongation factor GreA (Transcript cleavage factor GreA) [Helicobacter pylori B38] gi|261839321|gb|ACX99086.1| transcription elongation factor GreA [Helicobacter pylori 52] Length = 164 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|254284149|ref|ZP_04959117.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B] gi|219680352|gb|EED36701.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B] Length = 153 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 108/153 (70%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G +++EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTAEGERALREELERLKKVDRPRITQAIAEAREHGDLKENAEYHAAREQQSFAEGRIKDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ A+VID+S ++ ++ FG TV L+ + Y+IVG+ EADV++ ++S+ SP Sbjct: 61 EHKLSHAQVIDVSAIAHTGKVIFGTTVDLINLDDDSTVTYRIVGEDEADVRNNMISVGSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARAL+GK GD + V APGG+ YEI QV + Sbjct: 121 IARALVGKSEGDEVVVRAPGGDICYEIDQVRHV 153 >gi|221134941|ref|ZP_03561244.1| transcription elongation factor GreA [Glaciecola sp. HTCC2999] Length = 158 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G + ++ EL+ + +RP II AI+EAR +GDL ENAEY AA+E Q+ EGR+ + Sbjct: 5 PMTAHGAEMLRAELQELKSVKRPEIITAIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ A++ID++ M +I FG TV+L+ + D+ Y+IVGD EAD+++ L+S++S Sbjct: 65 IEGKLSNAQIIDVTKMENTGKIIFGTTVTLINCETDDEITYKIVGDDEADIKNNLISVNS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIAR LIGK + D+ ++ P G +E+++V +I Sbjct: 125 PIARGLIGKMVDDVANIQTPKGVVEFEVIEVQYI 158 >gi|119469583|ref|ZP_01612487.1| transcription elongation factor greA [Alteromonadales bacterium TW-7] gi|119447118|gb|EAW28388.1| transcription elongation factor greA [Alteromonadales bacterium TW-7] Length = 158 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D +++EL + RP+II I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTVRGADLLRKELNELKTVTRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD+++ L+S++ Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKNNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGK++ D +++ P G+ YEI++V ++ Sbjct: 124 SPIARGLIGKQMDDAVTIKTPKGDVEYEIIEVEYL 158 >gi|262401668|ref|ZP_06078234.1| transcription elongation factor GreA [Vibrio sp. RC586] gi|262352085|gb|EEZ01215.1| transcription elongation factor GreA [Vibrio sp. RC586] Length = 157 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 118/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM + ++ FGATV++++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKLEGDEVAIATPGGNKDFEIDRVEYL 157 >gi|24372774|ref|NP_716816.1| transcription elongation factor GreA [Shewanella oneidensis MR-1] gi|24346855|gb|AAN54261.1|AE015563_1 transcription elongation factor GreA [Shewanella oneidensis MR-1] Length = 158 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGLTDYEIISVQYI 158 >gi|261212255|ref|ZP_05926541.1| transcription elongation factor GreA [Vibrio sp. RC341] gi|260838863|gb|EEX65514.1| transcription elongation factor GreA [Vibrio sp. RC341] Length = 157 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM + ++ FGATV+L++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTLIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKMEGDEVAIVTPGGNKDFEIDRVEYL 157 >gi|254850868|ref|ZP_05240218.1| transcription elongation factor GreA [Vibrio cholerae MO10] gi|255744149|ref|ZP_05418102.1| transcription elongation factor GreA [Vibrio cholera CIRS 101] gi|262155723|ref|ZP_06028847.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1] gi|262169934|ref|ZP_06037624.1| transcription elongation factor GreA [Vibrio cholerae RC27] gi|25453014|sp|Q9KU89|GREA_VIBCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254846573|gb|EET24987.1| transcription elongation factor GreA [Vibrio cholerae MO10] gi|255738089|gb|EET93481.1| transcription elongation factor GreA [Vibrio cholera CIRS 101] gi|262021668|gb|EEY40379.1| transcription elongation factor GreA [Vibrio cholerae RC27] gi|262030434|gb|EEY49074.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1] gi|327483437|gb|AEA77844.1| Transcription elongation factor GreA [Vibrio cholerae LMA3894-4] Length = 157 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157 >gi|295698488|ref|YP_003603143.1| transcription elongation factor [Candidatus Riesia pediculicola USDA] gi|291157052|gb|ADD79497.1| transcription elongation factor [Candidatus Riesia pediculicola USDA] Length = 162 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T G K+++EL + + +RP II ++ EAR +GDL ENAEYQAA+E Q+ EG Sbjct: 1 MKRVPMTLNGEKKLRKELEFLKNVKRPEIITSLIEARKHGDLKENAEYQAAREEQSFYEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A VID++ + + + FG+TV+L + S YQIVG+ EAD + L+ Sbjct: 61 RIKEIERKLLNAHVIDVTQLKEKNHVTFGSTVTLKDNISEKISIYQIVGEDEADFKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIA+ +IGK+ GD++ +N P G+ Y IL+V +I Sbjct: 121 SFCSPIAKGIIGKKEGDVVKINTPNGKAIYTILEVKYI 158 >gi|119774088|ref|YP_926828.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119766588|gb|ABL99158.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 158 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELDILKFDRRPKITEAIAAARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M+ + RI FGATV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK LGD +++ P G YE+++V +I Sbjct: 121 SVNSPIARGLVGKNLGDEVNITTPAGVTAYEVVEVQYI 158 >gi|149773197|dbj|BAF64773.1| transcription elongation factor [Shewanella livingstonensis] Length = 204 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 46 IMSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICE 105 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++E ++ A++ID++ + R+ FG TV+++ ++ + Y+IVGD EAD++ L Sbjct: 106 ARIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNL 165 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +S+ PGG YEI++V ++ Sbjct: 166 ISVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 204 >gi|94265017|ref|ZP_01288786.1| Prokaryotic transcription elongation factor GreA [delta proteobacterium MLMS-1] gi|93454506|gb|EAT04791.1| Prokaryotic transcription elongation factor GreA [delta proteobacterium MLMS-1] Length = 187 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 115/155 (74%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV++IP+T +G ++++QEL Q+++RP +I+AI AR +GDL ENAEY AAKE Q+ E Sbjct: 29 MVERIPMTRQGHERLRQELNRLQRQDRPTVIEAIEVAREHGDLKENAEYHAAKERQSHIE 88 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ ++RAEVID+ + +R+ FG V LV+ ++ + +YQ++G +EADV+ G + Sbjct: 89 GRIMELKDKLSRAEVIDVEDLDCERVVFGVVVKLVDLDTEAEVSYQMLGPEEADVEQGSI 148 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SP+ RA+IGK +GD I+V PGG + +E++ + Sbjct: 149 SVLSPLGRAMIGKSVGDEITVKTPGGVRQFEVMDI 183 >gi|89095224|ref|ZP_01168147.1| transcription elongation factor greA (transcript cleavage factor) [Oceanospirillum sp. MED92] gi|89080521|gb|EAR59770.1| transcription elongation factor greA (transcript cleavage factor) [Oceanospirillum sp. MED92] Length = 153 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++EL + +RPR+I I+EAR +GDL ENAEY AA+E Q EGR+ EL Sbjct: 1 MTAAGEKALREELDQLKTVDRPRVIADIAEAREHGDLKENAEYHAAREQQGFIEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ +VID++++ ++ FG TV+++ ++ + K YQIVGD EAD++ +S++SP Sbjct: 61 EGKLSNCQVIDVTSIPHTGKVIFGTTVTIINLDTDETKTYQIVGDDEADIKVNKISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR L+GKE GDI+++ PGG YEI +V I Sbjct: 121 IARGLVGKEEGDIVNIQTPGGAAEYEIDEVAHI 153 >gi|120597887|ref|YP_962461.1| transcription elongation factor GreA [Shewanella sp. W3-18-1] gi|146293941|ref|YP_001184365.1| transcription elongation factor GreA [Shewanella putrefaciens CN-32] gi|120557980|gb|ABM23907.1| transcription elongation factor GreA [Shewanella sp. W3-18-1] gi|145565631|gb|ABP76566.1| transcription elongation factor GreA [Shewanella putrefaciens CN-32] gi|319427318|gb|ADV55392.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200] Length = 158 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGAEQLRKELDILKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGVTDYEIISVQYI 158 >gi|152991056|ref|YP_001356778.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2] gi|166200682|sp|A6Q4L2|GREA_NITSB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151422917|dbj|BAF70421.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2] Length = 163 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G++KIQ+E + EERP++++ I A+ +GDL ENAEY AAKE + Sbjct: 1 MEQKEPMTQYGYEKIQKEFEALK-EERPKVVEEIERAKEHGDLRENAEYHAAKERLAFID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ EL +++ RA+VID S + D++ FG+TV L++ ++ Y IVG E++ + GL+ Sbjct: 60 ARLTELSDLLARAQVIDPSKLPHDKVGFGSTVKLLDIEEEEEIEYTIVGSTESNPEHGLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S ++P+AR LIGKE GD I+V P GE +E+L+V + Sbjct: 120 SYNTPLARQLIGKEEGDEITVKLPKGEIDFEVLEVYY 156 >gi|258405567|ref|YP_003198309.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM 5692] gi|257797794|gb|ACV68731.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM 5692] Length = 161 Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D IP++ +GF+K++QEL ++ERP +I+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MDTIPISVEGFEKLKQELE-NLKKERPEVIQAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + + VID+ TM GD++AFGATV + + + + K Y ++G EA+V G +S Sbjct: 60 RITYIESRLPQCNVIDLDTMGGDKVAFGATVEIEDMETEEVKRYTLLGPDEANVDQGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A+AL+GK +GD VNAP G YE+L + + Sbjct: 120 VFSPLAKALLGKRVGDEAIVNAPRGRIEYEVLSIEF 155 >gi|116749520|ref|YP_846207.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans MPOB] gi|229485909|sp|A0LK20|GREA_SYNFM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116698584|gb|ABK17772.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans MPOB] Length = 156 Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 108/152 (71%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T +GF++++ EL+ Q++ERP +I+AI EAR++GD+SENAEY+AAKE Q + EGR+ Sbjct: 3 RVPITKEGFERLKIELQRLQRDERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L + E+++ S R FG+TV + + +G+ +Y++VG EADVQSG +S+ Sbjct: 63 QDLCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTISVV 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIGKE G+ I V P G + E+L++ Sbjct: 123 SPLGKALIGKEEGEEIRVQTPKGVRNIEVLEI 154 >gi|297380066|gb|ADI34953.1| transcription elongation factor GreA [Helicobacter pylori v225d] Length = 164 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|91228943|ref|ZP_01262840.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01] gi|262393373|ref|YP_003285227.1| transcription elongation factor GreA [Vibrio sp. Ex25] gi|269968316|ref|ZP_06182338.1| transcription elongation factor GreA [Vibrio alginolyticus 40B] gi|91187503|gb|EAS73838.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01] gi|262336967|gb|ACY50762.1| transcription elongation factor GreA [Vibrio sp. Ex25] gi|269827067|gb|EEZ81379.1| transcription elongation factor GreA [Vibrio alginolyticus 40B] Length = 157 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLRAELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDIDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157 >gi|260771182|ref|ZP_05880109.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972] gi|260613779|gb|EEX38971.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972] gi|315179211|gb|ADT86125.1| transcription elongation factor GreA [Vibrio furnissii NCTC 11218] Length = 157 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLRDELDRLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M +I FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEFKLSVAQVIDVTKMDNSGKIIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGGEK +EI V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGEKVFEIDHVDYV 157 >gi|78485225|ref|YP_391150.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] gi|123755246|sp|Q31H97|GREA_THICR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|78363511|gb|ABB41476.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] Length = 158 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G D +Q+EL+ ++ ERP + AI+EAR +GDL ENAEY AA+E Q L E R+ + Sbjct: 5 PMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEARIKQ 64 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+++ ++ID++ ++ + ++ FG+TV+++ ++ ++ Y+IVG++EAD++ +S++S Sbjct: 65 IESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKISVNS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARALI KE G+ I+V AP G YEI+++ ++ Sbjct: 125 PIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV 158 >gi|260775433|ref|ZP_05884330.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC BAA-450] gi|260608614|gb|EEX34779.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC BAA-450] Length = 157 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR L+GK GD + ++ PGG++ +EI V ++ Sbjct: 120 SVSSPIARGLVGKMEGDEVVISTPGGDRDFEIDSVEYV 157 >gi|237749802|ref|ZP_04580282.1| transcription elongation factor GreA [Helicobacter bilis ATCC 43879] gi|229374552|gb|EEO24943.1| transcription elongation factor GreA [Helicobacter bilis ATCC 43879] Length = 161 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 106/152 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ GF+K+ QEL+ ++ +RP++ + I AR++GDL ENAEY AAKE Q E ++ E Sbjct: 4 PMSKYGFNKLTQELKDLKEVQRPKVAQEIDIARSHGDLKENAEYHAAKEKQAFIEFKINE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +++ A+VID ST+ D+++FG+T++++ N+ + Y IVG E++ GL+S +SP Sbjct: 64 LSKMLSNAQVIDPSTLPHDKVSFGSTITILNLNTDKEVVYTIVGTTESNPSKGLISFNSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ LIGKE GD + +N P GE +EIL++ + Sbjct: 124 LAKELIGKEEGDEVIINLPAGETEFEILKIEY 155 >gi|90416147|ref|ZP_01224079.1| transcription elongation factor GreA [marine gamma proteobacterium HTCC2207] gi|90331872|gb|EAS47086.1| transcription elongation factor GreA [marine gamma proteobacterium HTCC2207] Length = 158 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL +E RP II+AI+ AR +GDL ENAEY AA+E Q+ EGR+ Sbjct: 3 KAPMTVEGEIALREELHHLIKEVRPTIIEAIATAREHGDLKENAEYHAAREQQSFTEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ +VIDI+ + GDR+ FG TV+++ + Y+IVGD EADV++ +S Sbjct: 63 QDIEGKLSNIQVIDINKIPHGDRVVFGTTVTIINLDLDKTVTYKIVGDDEADVKACKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARAL+GKE+ +++ V AP G+ YEI V +I Sbjct: 123 QSPIARALMGKEISEVVVVKAPSGDVEYEIDNVEFI 158 >gi|256829409|ref|YP_003158137.1| transcription elongation factor GreA [Desulfomicrobium baculatum DSM 4028] gi|256578585|gb|ACU89721.1| transcription elongation factor GreA [Desulfomicrobium baculatum DSM 4028] Length = 162 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP++ +GF ++++EL ++E RP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MNRIPISVEGFKRLEKELEDLKKE-RPAIIQAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ +E+ + R EVIDI T+ DR FGATV++ + + ++K Y ++G EAD G +S Sbjct: 60 RISHIESRMIRFEVIDIDTLQSDRAVFGATVTVEDVETEERKTYTLLGADEADHTKGTIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ RAL+GK+ GD ISV P G YE++ V ++ Sbjct: 120 IESPVGRALLGKQEGDEISVQVPKGRVDYEVISVSFL 156 >gi|114562155|ref|YP_749668.1| transcription elongation factor GreA [Shewanella frigidimarina NCIMB 400] gi|114333448|gb|ABI70830.1| transcription elongation factor GreA [Shewanella frigidimarina NCIMB 400] Length = 158 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 108/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ + R+ FG TV+++ ++ + Y+IVGD EAD++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGK GD +S+ PGG YEI++V ++ Sbjct: 123 NSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 158 >gi|90022372|ref|YP_528199.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] gi|89951972|gb|ABD81987.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] Length = 160 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 5 KYPMTVAGELALREELERLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 64 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID+ T+ ++ FG TV L+ + + Y IVG+ EA ++ +S+ Sbjct: 65 QEIEAKLSNAQVIDVKTIPHSGKVIFGTTVDLINVETDEAITYTIVGEDEASIKLNKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GD+ V APGGE YEI V I Sbjct: 125 TSPIARALIGKEEGDVAVVRAPGGEIEYEIDSVKHI 160 >gi|269961971|ref|ZP_06176326.1| transcription elongation factor GreA [Vibrio harveyi 1DA3] gi|269833294|gb|EEZ87398.1| transcription elongation factor GreA [Vibrio harveyi 1DA3] Length = 157 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|304413874|ref|ZP_07395291.1| transcription elongation factor [Candidatus Regiella insecticola LSR1] gi|304283594|gb|EFL91989.1| transcription elongation factor [Candidatus Regiella insecticola LSR1] Length = 162 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 110/156 (70%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T G +K+++EL + + + R II AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVCGEEKLRKELEYLKNKRRQEIITAIAEARAHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID++ + + RI FG+TV+++ + ++ Y+IVGD EA+ + L+S+ Sbjct: 63 QEIETKLSNAQVIDVTEIVNNGRIIFGSTVTVLNIATDEEYIYRIVGDDEANAKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+AR LIGK++ D + PGG+ YEI+ V ++ Sbjct: 123 NSPMARGLIGKQIDDTTVITTPGGDIEYEIIAVEYL 158 >gi|308183020|ref|YP_003927147.1| transcription elongation factor GreA [Helicobacter pylori PeCan4] gi|308065205|gb|ADO07097.1| transcription elongation factor GreA [Helicobacter pylori PeCan4] Length = 164 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|229525286|ref|ZP_04414691.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis VL426] gi|229338867|gb|EEO03884.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis VL426] Length = 150 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 112/151 (74%), Gaps = 2/151 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150 +S++SPIAR LIGK GD +S+ PGG K Y Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVY 150 >gi|88607617|ref|YP_505838.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ] gi|88598680|gb|ABD44150.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ] Length = 166 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T G+ K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 8 RFPITKGGYQKLESELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119 ELE+ +RAEVI++S +SGD + FGATV++ + ++ + YQIVG+ EADV + Sbjct: 67 MELESKKSRAEVIEVSELSGDTVMFGATVTVSVYDEQSDTTSEVKYQIVGEYEADVSKNM 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 +SI SP+ AL+GK GD + + P G+ K Y+I +V +I Sbjct: 127 ISIKSPLVLALLGKREGDSVELKTPRGDYKVYQINKVEFI 166 >gi|113969357|ref|YP_733150.1| transcription elongation factor GreA [Shewanella sp. MR-4] gi|114046584|ref|YP_737134.1| transcription elongation factor GreA [Shewanella sp. MR-7] gi|117919466|ref|YP_868658.1| transcription elongation factor GreA [Shewanella sp. ANA-3] gi|113884041|gb|ABI38093.1| transcription elongation factor GreA [Shewanella sp. MR-4] gi|113888026|gb|ABI42077.1| transcription elongation factor GreA [Shewanella sp. MR-7] gi|117611798|gb|ABK47252.1| transcription elongation factor GreA [Shewanella sp. ANA-3] Length = 158 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ M+ + RI FG TV+++ ++ + Y+IVGD EA+++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKMANNGRIIFGTTVTILNLDTDAEVTYRIVGDDEANIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 123 NSPIARGLVGKNEGDEVSIATPGGLTDYEIISVQYI 158 >gi|146283640|ref|YP_001173793.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501] gi|145571845|gb|ABP80951.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501] gi|327482035|gb|AEA85345.1| transcription elongation factor GreA [Pseudomonas stutzeri DSM 4166] Length = 158 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL+ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KFPMTIQGARALEEELKHLKTVLRPQITQAIAEARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VIDI++++ ++ FG TV + + ++ YQIVGD EAD++ G +S+ Sbjct: 63 RDIEGRLQNAQVIDIASIAPTGKVIFGTTVDIANVETDEQVTYQIVGDDEADIKQGKLSV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALIGKE GD+++V P G YEI++V I Sbjct: 123 SSPIARALIGKEEGDVVAVKTPSGLIEYEIVEVRHI 158 >gi|149192158|ref|ZP_01870378.1| transcription elongation factor GreA [Vibrio shilonii AK1] gi|148833998|gb|EDL51015.1| transcription elongation factor GreA [Vibrio shilonii AK1] Length = 157 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++++L R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLREDLD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ + +I FG+TV+L++ ++ ++ YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKLDNSGKIIFGSTVTLIDIDTDAEQTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG+K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVTIVTPGGQKDFEIDKVAYI 157 >gi|28899240|ref|NP_798845.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD 2210633] gi|260362164|ref|ZP_05775154.1| transcription elongation factor GreA [Vibrio parahaemolyticus K5030] gi|260879066|ref|ZP_05891421.1| transcription elongation factor GreA [Vibrio parahaemolyticus AN-5034] gi|260900671|ref|ZP_05909066.1| transcription elongation factor GreA [Vibrio parahaemolyticus AQ4037] gi|31076674|sp|Q87LZ2|GREA_VIBPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28807464|dbj|BAC60729.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD 2210633] gi|308089586|gb|EFO39281.1| transcription elongation factor GreA [Vibrio parahaemolyticus AN-5034] gi|308110885|gb|EFO48425.1| transcription elongation factor GreA [Vibrio parahaemolyticus AQ4037] gi|308111060|gb|EFO48600.1| transcription elongation factor GreA [Vibrio parahaemolyticus K5030] Length = 157 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQMLRTELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157 >gi|258623151|ref|ZP_05718162.1| transcription elongation factor GreA [Vibrio mimicus VM573] gi|258625329|ref|ZP_05720229.1| transcription elongation factor GreA [Vibrio mimicus VM603] gi|258582395|gb|EEW07244.1| transcription elongation factor GreA [Vibrio mimicus VM603] gi|258584571|gb|EEW09309.1| transcription elongation factor GreA [Vibrio mimicus VM573] Length = 158 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +++ PGG+K +EI +V ++ Sbjct: 120 ISVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 158 >gi|251771869|gb|EES52443.1| transcription elongation factor GreA [Leptospirillum ferrodiazotrophum] Length = 158 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 108/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G+ K+Q+EL ++ +R + I+ I+EARA+GDLSENAEY AAKE Q+ EG Sbjct: 1 MQQTPMTKEGYAKLQEELERLKKVDRTKNIQDIAEARAHGDLSENAEYHAAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ A V+ + DR+ FGATV+L ++G++K Y +VG +E D++ G +S Sbjct: 61 RIKELEAKLSTAIVVSSAHQDRDRVTFGATVTLKNTSTGEEKTYTLVGQEEVDLKRGRLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP+ +AL+G +G+ + + P GE YE+ ++ + Sbjct: 121 VASPVGKALVGHRVGENVLIRVPAGEIEYEVCRIDY 156 >gi|217033071|ref|ZP_03438538.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128] gi|298736570|ref|YP_003729096.1| transcription elongation factor GreA [Helicobacter pylori B8] gi|216945215|gb|EEC23900.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128] gi|298355760|emb|CBI66632.1| transcription elongation factor GreA [Helicobacter pylori B8] Length = 164 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+ GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESAPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDTVSIQLPNGESDFEILDIYY 156 >gi|125623471|ref|YP_001031954.1| transcription elongation factor greA [Lactococcus lactis subsp. cremoris MG1363] gi|166200668|sp|A2RIW3|GREA_LACLM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|124492279|emb|CAL97210.1| transcription elongation factor greA [Lactococcus lactis subsp. cremoris MG1363] gi|300070217|gb|ADJ59617.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris NZ9000] Length = 156 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 104/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD +G + Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI+ V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVDVPLPVGEMTVKIVKV 155 >gi|109947754|ref|YP_664982.1| transcription elongation factor GreA [Helicobacter acinonychis str. Sheeba] gi|123362580|sp|Q17WJ3|GREA_HELAH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|109714975|emb|CAJ99983.1| greA [Helicobacter acinonychis str. Sheeba] Length = 164 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 100/152 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ + Sbjct: 5 PMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEARIVD 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L II+ A+VID + ++++FG+T+ ++ ++ + +Y IVG E+D GL+S SP Sbjct: 65 LSEIISNAQVIDPGALMHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA++LIGK GD+ S+ P GE +EIL + + Sbjct: 125 IAKSLIGKSKGDVASIQLPNGESDFEILDIYY 156 >gi|153207473|ref|ZP_01946173.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat Q177'] gi|161831566|ref|YP_001597133.1| transcription elongation factor GreA [Coxiella burnetii RSA 331] gi|165918942|ref|ZP_02219028.1| transcription elongation factor GreA [Coxiella burnetii RSA 334] gi|120576604|gb|EAX33228.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat Q177'] gi|161763433|gb|ABX79075.1| transcription elongation factor GreA [Coxiella burnetii RSA 331] gi|165917339|gb|EDR35943.1| transcription elongation factor GreA [Coxiella burnetii RSA 334] Length = 159 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 5 IPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIEGRIL 64 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E + ++IDIS + + ++ FGATV+L+ + + YQI+G EA+++ +SIS Sbjct: 65 EIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENKISIS 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP ARA+IGK + D+I V P G YEI+ V ++ Sbjct: 125 SPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 159 >gi|226946316|ref|YP_002801389.1| transcription elongation factor GreA [Azotobacter vinelandii DJ] gi|226721243|gb|ACO80414.1| Prokaryotic transcription elongation factor GreA [Azotobacter vinelandii DJ] Length = 158 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL+ + E RP+I +AI+EAR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KFPMTVQGARALEEELKHLKTELRPQITQAIAEARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+ Sbjct: 63 RDIEGRLQNAQVIDVTAIPHTGKVIFGVTVEIANVETDETVVYQIVGDDEADIKQGKLSV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARAL+GKE GD+ +V P G YEI++V + Sbjct: 123 SSPIARALVGKEEGDVAAVKTPSGTVEYEIIEVRHV 158 >gi|156975672|ref|YP_001446579.1| transcription elongation factor GreA [Vibrio harveyi ATCC BAA-1116] gi|156527266|gb|ABU72352.1| hypothetical protein VIBHAR_03407 [Vibrio harveyi ATCC BAA-1116] Length = 157 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|167626378|ref|YP_001676878.1| transcription elongation factor GreA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668809|ref|ZP_04756387.1| GreA/GreB family elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877341|ref|ZP_05250051.1| transcriptional elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|259647641|sp|B0TYL2|GREA_FRAP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167596379|gb|ABZ86377.1| GreA/GreB family elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843362|gb|EET21776.1| transcriptional elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 160 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR+ Sbjct: 5 RVPMTPAGEQALRAELSRLKKTERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGRI 64 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ YQIVG+ EAD+ + +S+ Sbjct: 65 KDIESKLSNAQVIDVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNHKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P+ARALI KE+GD I ++ P G+ TYEI+ V + Sbjct: 125 VAPLARALIKKEVGDEIILDTPKGKVTYEIVDVEY 159 >gi|126175452|ref|YP_001051601.1| transcription elongation factor GreA [Shewanella baltica OS155] gi|153001803|ref|YP_001367484.1| transcription elongation factor GreA [Shewanella baltica OS185] gi|160876536|ref|YP_001555852.1| transcription elongation factor GreA [Shewanella baltica OS195] gi|217972302|ref|YP_002357053.1| transcription elongation factor GreA [Shewanella baltica OS223] gi|304410278|ref|ZP_07391897.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307302011|ref|ZP_07581769.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|125998657|gb|ABN62732.1| transcription elongation factor GreA [Shewanella baltica OS155] gi|151366421|gb|ABS09421.1| transcription elongation factor GreA [Shewanella baltica OS185] gi|160862058|gb|ABX50592.1| transcription elongation factor GreA [Shewanella baltica OS195] gi|217497437|gb|ACK45630.1| transcription elongation factor GreA [Shewanella baltica OS223] gi|304351687|gb|EFM16086.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306914049|gb|EFN44470.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315268730|gb|ADT95583.1| transcription elongation factor GreA [Shewanella baltica OS678] Length = 158 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGAEQLRKELDILKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDVEVTYRIVGDDEANIKENLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD +S+ PGG YEI+ V ++ Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGMTDYEIISVQYL 158 >gi|269103415|ref|ZP_06156112.1| transcription elongation factor GreA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163313|gb|EEZ41809.1| transcription elongation factor GreA [Photobacterium damselae subsp. damselae CIP 102761] Length = 157 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G K++QEL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRGEQKLRQELEVLMKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG TV+L+ ++ ++ Y+IVGD EAD + L+ Sbjct: 60 QIRDIEYKLSVAQVIDVTKMPNSGKVIFGTTVTLLNLDTDEETTYRIVGDDEADFKQNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD + + PGG K +EI++V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVQIATPGGTKEFEIVEVQYI 157 >gi|209364053|ref|YP_001424721.2| transcription elongation factor [Coxiella burnetii Dugway 5J108-111] gi|212212334|ref|YP_002303270.1| transcription elongation factor [Coxiella burnetii CbuG_Q212] gi|212218695|ref|YP_002305482.1| transcription elongation factor [Coxiella burnetii CbuK_Q154] gi|215919153|ref|NP_820273.2| transcription elongation factor [Coxiella burnetii RSA 493] gi|206584037|gb|AAO90787.2| transcription elongation factor [Coxiella burnetii RSA 493] gi|207081986|gb|ABS78133.2| transcription elongation factor [Coxiella burnetii Dugway 5J108-111] gi|212010744|gb|ACJ18125.1| transcription elongation factor [Coxiella burnetii CbuG_Q212] gi|212012957|gb|ACJ20337.1| transcription elongation factor [Coxiella burnetii CbuK_Q154] Length = 173 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q EGR+ Sbjct: 19 IPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIEGRIL 78 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E + ++IDIS + + ++ FGATV+L+ + + YQI+G EA+++ +SIS Sbjct: 79 EIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENKISIS 138 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP ARA+IGK + D+I V P G YEI+ V ++ Sbjct: 139 SPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 173 >gi|119478511|ref|ZP_01618473.1| Transcription elongation factor GreA [marine gamma proteobacterium HTCC2143] gi|119448492|gb|EAW29740.1| Transcription elongation factor GreA [marine gamma proteobacterium HTCC2143] Length = 153 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 106/150 (70%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + E+RPRI++ I++AR +GDL ENAEY AA+E Q EGR+ E+ Sbjct: 1 MTVAGEAAMRAELHRLKSEDRPRIVQDIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ + VID++T+ S ++ FG TV++V + ++ Y+IVG+ EA+V +G++S++SP Sbjct: 61 EGKLSDSIVIDVTTIPSTGKVIFGTTVAIVNCETDEEVTYKIVGEDEANVSAGMISVTSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IARALIGKE+GD+ V P G+ YEI +V Sbjct: 121 IARALIGKEVGDVAVVKTPKGDVEYEIDEV 150 >gi|317484639|ref|ZP_07943542.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6] gi|316924113|gb|EFV45296.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6] Length = 160 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 106/153 (69%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +GF ++QEL R ++ERP +I+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 4 IPISKEGFQALEQELD-RLKKERPHVIQAIKEAREEGDLKENAGYDAARERQGMLEARIK 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + VID+ST+S ++ FGATV++ + ++G+++ + ++G EAD G +SI S Sbjct: 63 YIESRMALFNVIDLSTLSSEKAIFGATVTVEDADTGEEREFTLLGPDEADYAKGTISIQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ AL+GKE+GD I+VNAP G YEI+ + + Sbjct: 123 PVGVALLGKEVGDEITVNAPRGRINYEIIDIQF 155 >gi|163750815|ref|ZP_02158050.1| transcription elongation factor GreA [Shewanella benthica KT99] gi|161329510|gb|EDQ00504.1| transcription elongation factor GreA [Shewanella benthica KT99] Length = 158 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ ++ID++ M + RI FG TV+++ + D+ Y+IVG+ EA+++ L+ Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENSGRIIFGTTVTILNVETEDESTYRIVGEDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK L D +++ PGG YEI+ V +I Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGTTDYEIIAVEYI 158 >gi|242280745|ref|YP_002992874.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM 2638] gi|259647639|sp|C6BRV2|GREA_DESAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|242123639|gb|ACS81335.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM 2638] Length = 160 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +GF KI+ EL ++E RP +IKAI+EAR GDL EN Y AA+E Q + E ++ Sbjct: 4 IPISKEGFAKIKAELASLKKE-RPEVIKAIAEAREEGDLKENGGYHAARERQGMLEAKIN 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ I + V+D++T+ G++I FGATV+L + ++G +K Y I+G E+D + G++SI S Sbjct: 63 YIESRIPQFNVVDMTTLGGEKITFGATVTLEDIDTGAEKTYTIMGPDESDFKKGIISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ +AL+GK GD + VNAP G+ Y I+ V++ Sbjct: 123 PVGKALLGKIEGDEVVVNAPKGKIEYGIVSVIF 155 >gi|163802294|ref|ZP_02196188.1| transcription elongation factor GreA [Vibrio sp. AND4] gi|159173823|gb|EDP58637.1| transcription elongation factor GreA [Vibrio sp. AND4] Length = 157 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS+G +++ + R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTSRG-EQLLRTELERLLKLRPQISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEFKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|94986751|ref|YP_594684.1| transcription elongation factor GreA [Lawsonia intracellularis PHE/MN1-00] gi|94731000|emb|CAJ54363.1| transcription elongation factor greA [Lawsonia intracellularis PHE/MN1-00] Length = 157 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +G+ +++EL R ++ERP +I+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 3 IPISQQGYQNLEKELD-RLKKERPAVIQAIKEAREEGDLKENAGYDAARERQGMLEARIN 61 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + + +IDI+T+SGD+ FGATV++ + +SG++K + ++G EAD G +SI S Sbjct: 62 YIESRMAQFNIIDITTLSGDKAIFGATVTVEDIDSGERKEFTLLGPDEADYTKGSISIQS 121 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ RAL+GK++GD ++V+ P G +YEI+ + + Sbjct: 122 PVGRALLGKKVGDELTVDVPRGRISYEIIDIQF 154 >gi|83644091|ref|YP_432526.1| transcription elongation factor [Hahella chejuensis KCTC 2396] gi|83632134|gb|ABC28101.1| Transcription elongation factor [Hahella chejuensis KCTC 2396] Length = 158 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 110/152 (72%), Gaps = 1/152 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +++EL + +RPR+I AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ +++ID++++ ++ FG TV+++ ++ D +YQIVGD EAD++ G + Sbjct: 61 RIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTDDVSSYQIVGDDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S+SSPIARALIGK +GD++ V P G YEI Sbjct: 121 SVSSPIARALIGKTVGDVVVVQVPSGMVEYEI 152 >gi|170727907|ref|YP_001761933.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908] gi|169813254|gb|ACA87838.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908] Length = 153 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D++++EL + + E+RP+I +AI EAR GDL ENAEY AA+E Q L E R+ +L Sbjct: 1 MTIVGADQLRKELDYLKFEKRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M RI FG TV+++ ++ + Y+IVGD EA+++ L+S+SSP Sbjct: 61 EGKLSNAQIIDVTKMQNTGRIIFGTTVTILNIDTDVETTYRIVGDDEANIKENLLSVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK + D ++++ PGG YEI V +I Sbjct: 121 IARGLIGKNVDDEVTISTPGGMTEYEITAVEYI 153 >gi|220904317|ref|YP_002479629.1| transcription elongation factor GreA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254799558|sp|B8IZM4|GREA_DESDA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219868616|gb|ACL48951.1| transcription elongation factor GreA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 162 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +G+ +++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 4 IPISVQGYKALEEEL-ARLKSERPEIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + +VID+ T+SGD++ FGATV L + +SG+ K Y I+G EAD G +S S Sbjct: 63 YIESRMALYQVIDLDTLSGDKVIFGATVDLEDVDSGEAKTYTILGPDEADPSKGSISFLS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ +AL+G+E GD +SV P G TYEI+ V + Sbjct: 123 PVGQALLGREEGDEVSVEIPRGRVTYEIIGVSF 155 >gi|116511431|ref|YP_808647.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris SK11] gi|123025545|sp|Q030Z7|GREA_LACLS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116107085|gb|ABJ72225.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris SK11] Length = 156 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 105/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE+++ + ++ D +A G V+ VE D+++YQIVG EAD +G + Sbjct: 61 GRISTVETMIRYAEIVNNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI++V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155 >gi|298529319|ref|ZP_07016722.1| transcription elongation factor GreA [Desulfonatronospira thiodismutans ASO3-1] gi|298510755|gb|EFI34658.1| transcription elongation factor GreA [Desulfonatronospira thiodismutans ASO3-1] Length = 165 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D IP++ +GF +++QEL + Q ERP +I+AI EAR GDL ENA Y AA+E Q L E Sbjct: 1 MSDSIPISEEGFARLKQELE-KLQAERPEVIQAIKEAREEGDLKENAGYDAARERQGLLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A++ + + +ID+ TM G+++ +GATV + ++G+ K Y ++G E D + Sbjct: 60 AKIAQITSRMPMFNIIDLDTMDGNKVCYGATVEIENVDTGEVKKYTLLGPDETDFVPDSL 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ARAL+G+E+GD VNAP G+ YEIL + + Sbjct: 120 SVFSPLARALMGREVGDETVVNAPKGKIEYEILDIKF 156 >gi|27904835|ref|NP_777961.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611722|sp|P59489|GREA_BUCBP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27904233|gb|AAO27066.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 159 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+IP+T G +K+++EL + +RP+IIK+I EAR +GDL EN+EY AA+E Q E Sbjct: 1 MNDQIPMTILGVEKLRKELEMLKTIKRPKIIKSIIEARQHGDLKENSEYHAAREEQGFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E +++A +IDI+ + + I FG+TV+++ S + Y+IVGD E++ + L Sbjct: 61 GRIKEIELKLSKARIIDITKVKNNGVIIFGSTVTILNLTSNQEFTYRIVGDDESNFKRKL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI+SP++R L+GK++ D+ ++ P G+ Y+IL++ + Sbjct: 121 ISINSPMSRGLVGKKVSDVATIKTPVGDVKYKILKIEY 158 >gi|223038587|ref|ZP_03608880.1| transcription elongation factor GreA [Campylobacter rectus RM3267] gi|222879989|gb|EEF15077.1| transcription elongation factor GreA [Campylobacter rectus RM3267] Length = 162 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E R+AE Sbjct: 4 PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIESRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I++RA+VID S D++ FG+TV +++ + +K Y +VG E++++ GL+SI+SP Sbjct: 64 LSDIVSRAKVIDPSEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLISINSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ LIGK GD +++N P G EI+ V + Sbjct: 124 LAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155 >gi|33152720|ref|NP_874073.1| transcription elongation factor GreA [Haemophilus ducreyi 35000HP] gi|71152089|sp|Q7VL00|GREA_HAEDU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|33148944|gb|AAP96462.1| transcription elongation factor [Haemophilus ducreyi 35000HP] Length = 158 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + A+VID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+ Sbjct: 63 QEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR L+GK + D +S+ PGG+ ++I+ V + Sbjct: 123 NSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY 157 >gi|330447386|ref|ZP_08311035.1| transcription elongation factor GreA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491577|dbj|GAA05532.1| transcription elongation factor GreA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 157 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLRSELDVLLKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++TM ++ FG T++L++ ++ + Y IVGD EAD++ L+ Sbjct: 60 QIRDIEYKLSVAQIIDVTTMPNTGKVIFGTTITLLDLDTDKEVTYCIVGDDEADIKQNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD ++++ PGG+K +EIL+V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGQKEFEILEVQYI 157 >gi|332534013|ref|ZP_08409864.1| transcription elongation factor GreA [Pseudoalteromonas haloplanktis ANT/505] gi|332036562|gb|EGI73029.1| transcription elongation factor GreA [Pseudoalteromonas haloplanktis ANT/505] Length = 158 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D +++EL + RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTVRGADLLRKELNELKTVTRPKIIADIAVAREHGDLKENAEYHAAREQQGFCEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ ++ID++ M ++ FG TV++V ++ + Y+IVGD EAD+++ L+S++ Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVDTDAEVKYRIVGDDEADIKNNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGK++ D +S+ P G YEI++V ++ Sbjct: 124 SPIARGLIGKQVDDAVSIQTPKGIVEYEIIEVEYL 158 >gi|73666717|ref|YP_302733.1| transcription elongation factor GreA [Ehrlichia canis str. Jake] gi|72393858|gb|AAZ68135.1| transcription elongation factor GreA [Ehrlichia canis str. Jake] Length = 170 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/163 (47%), Positives = 116/163 (71%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 9 MNERFPITKSGFEKLELELE-SLKHERPKIIKSISEARELGDLSENAEYHAARERQGLIE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ Y+IVG+ E D+ Sbjct: 68 SKIMELESKRSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYKIVGEYEVDIS 127 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ K Y+I+++ +I Sbjct: 128 KQMISIKSPLVLSLLGKKEGDVVEVRTPKGDYKIYKIIKIEFI 170 >gi|328675796|gb|AEB28471.1| Transcription elongation factor GreA [Francisella cf. novicida 3523] Length = 160 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELEKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETIYKIVGEDEADIDNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++P+ARALI KE GD +S++ P G+ TYEI+ V + Sbjct: 124 VAAPLARALIKKEEGDEVSLDTPKGKVTYEIVAVEY 159 >gi|167625072|ref|YP_001675366.1| transcription elongation factor GreA [Shewanella halifaxensis HAW-EB4] gi|167355094|gb|ABZ77707.1| transcription elongation factor GreA [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+ ++ Sbjct: 1 MTVVGAERLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++TM + R+ FG+TV+++ ++ + Y+IVG+ EA+++ L+S+SSP Sbjct: 61 EGKLSHAQIIDVTTMDNNGRVIFGSTVTILNLDTEGEVTYRIVGEDEANIRENLLSVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK L D IS+ PGG +EI++V +I Sbjct: 121 IARGLIGKNLDDEISIVTPGGTTDFEIIKVDYI 153 >gi|301165527|emb|CBW25098.1| transcription elongation factor greA [Bacteriovorax marinus SJ] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 105/158 (66%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T +G+DK+Q EL + ER + I+EAR GDL ENAEY +AKE Q++ E Sbjct: 1 MSNETPITKEGYDKVQAELDHLIKVEREELKTTIAEARELGDLKENAEYHSAKEKQSVVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ +L+ +I A+VID T+S D+I FGATV+L+ + Y+IVG+ E++++ G + Sbjct: 61 GRIMQLQGVIANAQVIDPKTVSTDKIVFGATVTLLNVEEDETVVYKIVGEIESNMKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+ +A+IGKE GD + V AP G+ YE+ +I Sbjct: 121 SYKSPLGKAVIGKEEGDTVIVKAPKGDIEYEVESFEYI 158 >gi|296113338|ref|YP_003627276.1| transcription elongation factor GreA [Moraxella catarrhalis RH4] gi|295921032|gb|ADG61383.1| transcription elongation factor GreA [Moraxella catarrhalis RH4] gi|326560322|gb|EGE10710.1| transcription elongation factor GreA [Moraxella catarrhalis 7169] gi|326562019|gb|EGE12349.1| transcription elongation factor GreA [Moraxella catarrhalis 103P14B1] gi|326563561|gb|EGE13820.1| transcription elongation factor GreA [Moraxella catarrhalis 12P80B1] gi|326566359|gb|EGE16509.1| transcription elongation factor GreA [Moraxella catarrhalis BC1] gi|326570169|gb|EGE20214.1| transcription elongation factor GreA [Moraxella catarrhalis BC8] gi|326570907|gb|EGE20931.1| transcription elongation factor GreA [Moraxella catarrhalis BC7] gi|326574514|gb|EGE24456.1| transcription elongation factor GreA [Moraxella catarrhalis 101P30B1] gi|326575898|gb|EGE25821.1| transcription elongation factor GreA [Moraxella catarrhalis CO72] gi|326576362|gb|EGE26271.1| transcription elongation factor GreA [Moraxella catarrhalis O35E] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID + + + R+ FG TV L + G K+ Y+IVGD EAD + G +S+ Sbjct: 63 RDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G +EIL+V++ Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157 >gi|262163952|ref|ZP_06031691.1| transcription elongation factor GreA [Vibrio mimicus VM223] gi|262172290|ref|ZP_06039968.1| transcription elongation factor GreA [Vibrio mimicus MB-451] gi|261893366|gb|EEY39352.1| transcription elongation factor GreA [Vibrio mimicus MB-451] gi|262027480|gb|EEY46146.1| transcription elongation factor GreA [Vibrio mimicus VM223] Length = 157 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG+K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 157 >gi|327399334|ref|YP_004340203.1| transcription elongation factor GreA [Hippea maritima DSM 10411] gi|327181963|gb|AEA34144.1| transcription elongation factor GreA [Hippea maritima DSM 10411] Length = 156 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 103/155 (66%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+ +T +G+ K+ +E+ Q+ +RP IIK I EARA GDLSENAEY AAKE L E Sbjct: 1 MAEKMLITPEGYRKLLEEMEDLQKNQRPAIIKEIEEARAKGDLSENAEYHAAKEKHALIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++EL I A+V+D T+ DR+ FG V L + ++ Y IVG+ E+D ++G + Sbjct: 61 NRISELSKKINNAQVVDPETVPKDRVNFGCKVILYDIEKEEEIEYMIVGEDESDPENGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI+SPIAR+L+GK+ GD + V P G + +EI ++ Sbjct: 121 SINSPIARSLLGKQEGDEVEVKVPAGVRRFEIEEI 155 >gi|320353912|ref|YP_004195251.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM 2032] gi|320122414|gb|ADW17960.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM 2032] Length = 161 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 111/155 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +IP++ G ++++EL ++ ERP I+KAI ARA+GDLSENAEY AAKE Q+L E Sbjct: 1 MVVRIPMSLTGNRQLREELERLERVERPEIVKAIEVARAHGDLSENAEYHAAKERQSLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RAEVID S +S +R FG V+L++ + + YQ++G +EADV+ G + Sbjct: 61 GRILELKDKLGRAEVIDCSKVSTNRAVFGTVVTLMDLTTEVEVTYQLLGPEEADVKKGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SP+ +AL+GKE+GD + PGG + +E++ + Sbjct: 121 SVLSPLGQALLGKEIGDEVVTKTPGGMREFEVIDI 155 >gi|262274892|ref|ZP_06052703.1| transcription elongation factor GreA [Grimontia hollisae CIP 101886] gi|262221455|gb|EEY72769.1| transcription elongation factor GreA [Grimontia hollisae CIP 101886] Length = 157 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRG-EQLLRDELDRLLKRRPLITQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M + ++ FGATV+L++ ++ ++ YQIVGD EAD + L+ Sbjct: 60 QIRDIEYKLSVAQVIDIAKMPNNGKVIFGATVTLIDCHTDEEVTYQIVGDDEADFKKNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD +++ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKEEGDEVAITVPGGVKEFEIESVKYI 157 >gi|126726046|ref|ZP_01741888.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2150] gi|126705250|gb|EBA04341.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 1 MEKIPLTRGGFTALEAELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II+ AEVID M+G I FGATV++V++++ ++K YQIVG+ EA+++ G ++ Sbjct: 61 RVKELEAIISLAEVIDPVGMTG-AIKFGATVTIVDEDTDEEKTYQIVGEHEANIEQGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP++R LIGKE GD + V PGG ++YEIL++ Sbjct: 120 LKSPLSRGLIGKEEGDSVEVKTPGGTRSYEILKI 153 >gi|255321856|ref|ZP_05363006.1| transcription elongation factor GreA [Campylobacter showae RM3277] gi|255300960|gb|EET80227.1| transcription elongation factor GreA [Campylobacter showae RM3277] Length = 160 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E R+AE Sbjct: 4 PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIESRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +II+RA+VID + D++ FG+TV +++ + +K Y +VG E++++ GL+SI+SP Sbjct: 64 LSDIISRAKVIDPAEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLISINSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ LIGK GD +++N P G EI+ V + Sbjct: 124 LAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155 >gi|91792357|ref|YP_562008.1| transcription elongation factor GreA [Shewanella denitrificans OS217] gi|91714359|gb|ABE54285.1| transcription elongation factor GreA [Shewanella denitrificans OS217] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KVPMTVVGAEQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID++ + R+ FG TV+++ + + Y+IVGD EAD++ L+S+ Sbjct: 63 RDIEGKLSNAQIIDVTKIENTGRVIFGTTVTILNVETDAEVKYRIVGDDEADIKQNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR LIGK GD +S+ PGG YEI+ V +I Sbjct: 123 NSPIARGLIGKNEGDEVSITTPGGLTDYEIIAVEYI 158 >gi|118602845|ref|YP_904060.1| transcription elongation factor GreA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|189042247|sp|A1AXD2|GREA_RUTMC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118567784|gb|ABL02589.1| transcription elongation factor GreA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T G ++ EL + RPRII+ I ARA+GDL ENAEY AAKE Q EG Sbjct: 1 MENIPMTVFGAKVLEAELLKLKNVSRPRIIENIVTARAHGDLKENAEYHAAKEEQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++R +VID++ ++ D R FG T++L+ + Y+IVG+ EAD+ G + Sbjct: 61 RIKEVESKLSRMQVIDVTKLNQDGRCVFGTTITLMNIEDDSETTYKIVGEDEADIILGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIA AL+G E GD ++V AP G+ YE+L V +I Sbjct: 121 SCHSPIASALMGNEEGDEVTVKAPKGDIVYEVLSVEYI 158 >gi|57238811|ref|YP_179947.1| transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] gi|57160890|emb|CAH57795.1| transcription elongation factor GreA [Ehrlichia ruminantium str. Welgevonden] Length = 162 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 1 MNERFPITKAGFEKLELELESLKYE-RPQIIKSISEARELGDLSENAEYHAARERQGLVE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID++ +SGD + FGATV++ + S D+ YQIVG+ E+D+ Sbjct: 60 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I Sbjct: 120 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162 >gi|262376633|ref|ZP_06069861.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] gi|262308343|gb|EEY89478.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL + +RPRI +I+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELHQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQVIDVKELEHNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD + +N P GE YEI++V ++ Sbjct: 123 NSPIARGLLGKNEGDDVKINTPNGEVEYEIVKVEYL 158 >gi|54307806|ref|YP_128826.1| transcription elongation factor GreA [Photobacterium profundum SS9] gi|46912229|emb|CAG19024.1| putative transcription elongation factor GreA [Photobacterium profundum SS9] Length = 166 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 9 FMEKVPMTVRGEQTLREELEILLKR-RPIISKAIGEARELGDLKENAEYHAAREEQGICE 67 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ ++VID++ M ++ FG TV L++ N+ D+ Y IVGD EAD++ L Sbjct: 68 AQIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDELTYCIVGDDEADIKKNL 127 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +S++ PGG K +EI QV ++ Sbjct: 128 ISVNSPIARGLIGKLEGDEVSIHTPGGVKEFEIEQVQYL 166 >gi|32265653|ref|NP_859685.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC 51449] gi|81666522|sp|Q7VJT9|GREA_HELHP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|32261701|gb|AAP76751.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 105/152 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G++K+ EL+ ++ ERPRI+ I AR++GDL ENAEY AA+E Q E R+ E Sbjct: 5 PMTNYGYEKLCAELKNLKEVERPRIVVEIDIARSHGDLKENAEYHAAREKQAFIEARINE 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSP Sbjct: 65 LGLMLANAQVIDPASLPHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+AL+GK GD +S+ P GE +EIL+V + Sbjct: 125 IAKALMGKSEGDEVSITLPNGENEFEILEVFY 156 >gi|241762247|ref|ZP_04760329.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753827|ref|YP_003226720.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856510|ref|YP_163350.2| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ZM4] gi|7387716|sp|O50237|GREA_ZYMMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3820585|gb|AAC70357.1| transcription elongation factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373294|gb|EER62913.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553190|gb|ACV76136.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775514|gb|AAV90239.2| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ZM4] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 106/156 (67%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KIP+ +G + EL R ERP+II AI EARA+GDLSENAEY AAKE Q E Sbjct: 5 EKIPMLIEGQQMLMDEL-ARLHAERPKIIDAIEEARAHGDLSENAEYHAAKERQGQVEAM 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++E ++RA VID T+SGD++ FGATV L++++ K YQIVG EA+ + G +S Sbjct: 64 IGDIEGKLSRALVIDPKTLSGDKVIFGATVHLLDEDDKPVK-YQIVGQTEANAKGGRISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++ D I V+ P G++ Y I ++ +I Sbjct: 123 NSPLGRALIGRKVDDEIEVSVPSGDRYYLISKIEFI 158 >gi|34557197|ref|NP_907012.1| transcription elongation factor GreA [Wolinella succinogenes DSM 1740] gi|81833097|sp|Q7M9N2|GREA_WOLSU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|34482913|emb|CAE09912.1| TRANSCRIPTION ELONGATION FACTOR GREA TRANSCRIPT CLEAVAGE FACTORGREA [Wolinella succinogenes] Length = 162 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G++K+Q+EL+ ++ ERP+I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MQKEPMTIYGYEKLQRELKELKEVERPQIVKEIDIARGHGDLKENAEYHAAKERQLFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL I++R +V+D +T++ ++I+FG+T +++ ++ Y IVG E++ G +S Sbjct: 61 RINELSEILSRTQVVDPATITHEKISFGSTFKVMDLDTEFVYEYTIVGAPESNPDRGFIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR LIGK GD I+ P GE YE+L+V + Sbjct: 121 FYSPLARQLIGKVPGDEINAKLPNGEIDYEVLEVYY 156 >gi|58578740|ref|YP_196952.1| transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] gi|58616800|ref|YP_195999.1| transcription elongation factor greA [Ehrlichia ruminantium str. Gardel] gi|58416412|emb|CAI27525.1| Transcription elongation factor greA [Ehrlichia ruminantium str. Gardel] gi|58417366|emb|CAI26570.1| Transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] Length = 166 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 5 MNERFPITKAGFEKLELELESLKYE-RPQIIKSISEARELGDLSENAEYHAARERQGLVE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID++ +SGD + FGATV++ + S D+ YQIVG+ E+D+ Sbjct: 64 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 123 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I Sbjct: 124 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166 >gi|313144398|ref|ZP_07806591.1| transcription elongation factor greA [Helicobacter cinaedi CCUG 18818] gi|313129429|gb|EFR47046.1| transcription elongation factor greA [Helicobacter cinaedi CCUG 18818] Length = 162 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/152 (40%), Positives = 108/152 (71%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ E Sbjct: 4 PMTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSP Sbjct: 64 LGLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+AL+GK+ GD +S+ P GE +EIL+V + Sbjct: 124 IAKALMGKKQGDEVSIMLPSGENEFEILEVFY 155 >gi|254369654|ref|ZP_04985664.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC022] gi|157122613|gb|EDO66742.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC022] Length = 160 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGKQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159 >gi|57339826|gb|AAW49900.1| hypothetical protein FTT1313 [synthetic construct] Length = 195 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 30 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 89 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 90 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 149 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 150 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 185 >gi|326559681|gb|EGE10092.1| transcription elongation factor GreA [Moraxella catarrhalis 46P47B1] Length = 158 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A++ID + + + R+ FG TV L + G ++ Y+IVGD EAD + G +S+ Sbjct: 63 RDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGARRRYKIVGDDEADFKVGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G +EIL+V++ Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157 >gi|56708370|ref|YP_170266.1| transcription elongation factor GreA [Francisella tularensis subsp. tularensis SCHU S4] gi|89256763|ref|YP_514125.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica LVS] gi|110670840|ref|YP_667397.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis FSC198] gi|115315154|ref|YP_763877.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica OSU18] gi|118497261|ref|YP_898311.1| transcriptional elongation factor [Francisella tularensis subsp. novicida U112] gi|134302355|ref|YP_001122324.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis WY96-3418] gi|156502925|ref|YP_001428990.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010904|ref|ZP_02275835.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC200] gi|187931963|ref|YP_001891948.1| transcriptional elongation factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194323563|ref|ZP_03057340.1| transcription elongation factor GreA family protein [Francisella tularensis subsp. novicida FTE] gi|208779054|ref|ZP_03246400.1| transcription elongation factor GreA family protein [Francisella novicida FTG] gi|224457500|ref|ZP_03665973.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|254368054|ref|ZP_04984074.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica 257] gi|254370993|ref|ZP_04986996.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254372634|ref|ZP_04988123.1| transcriptional elongation factor [Francisella tularensis subsp. novicida GA99-3549] gi|254875193|ref|ZP_05247903.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|290954459|ref|ZP_06559080.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica URFT1] gi|295312121|ref|ZP_06802932.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica URFT1] gi|81597269|sp|Q5NFC6|GREA_FRATT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122324847|sp|Q0BKZ4|GREA_FRATO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123094496|sp|Q2A2C7|GREA_FRATH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123359419|sp|Q14GS9|GREA_FRAT1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647642|sp|A7NDI1|GREA_FRATF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647643|sp|B2SDF5|GREA_FRATM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647644|sp|A0Q5P2|GREA_FRATN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647645|sp|A4IZ52|GREA_FRATW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54113791|gb|AAV29529.1| NT02FT0408 [synthetic construct] gi|56604862|emb|CAG45946.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis SCHU S4] gi|89144594|emb|CAJ79913.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica LVS] gi|110321173|emb|CAL09329.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis FSC198] gi|115130053|gb|ABI83240.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica OSU18] gi|118423167|gb|ABK89557.1| transcriptional elongation factor [Francisella novicida U112] gi|134050132|gb|ABO47203.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134253864|gb|EBA52958.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica 257] gi|151569234|gb|EDN34888.1| hypothetical protein FTBG_01615 [Francisella tularensis subsp. tularensis FSC033] gi|151570361|gb|EDN36015.1| transcriptional elongation factor [Francisella novicida GA99-3549] gi|156253528|gb|ABU62034.1| transcriptional elongation factor, GreA/GreB family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|187712872|gb|ACD31169.1| transcriptional elongation factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194322418|gb|EDX19899.1| transcription elongation factor GreA family protein [Francisella tularensis subsp. novicida FTE] gi|208744854|gb|EDZ91152.1| transcription elongation factor GreA family protein [Francisella novicida FTG] gi|254841192|gb|EET19628.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|282159989|gb|ADA79380.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis NE061598] gi|328676750|gb|AEB27620.1| Transcription elongation factor GreA [Francisella cf. novicida Fx1] Length = 160 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159 >gi|261250302|ref|ZP_05942878.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891] gi|260939418|gb|EEX95404.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891] Length = 157 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQQLRVELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EA++++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEANIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGG++ +EI +V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDRVEYL 157 >gi|260771823|ref|ZP_05880741.1| transcription elongation factor GreA [Vibrio metschnikovii CIP 69.14] gi|260613115|gb|EEX38316.1| transcription elongation factor GreA [Vibrio metschnikovii CIP 69.14] Length = 157 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLRDELERLLKLRPKITQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ + ++ FG+TVSL++ ++ ++K YQIVGD EA++++G + Sbjct: 60 QIRDIEYKLSVAQVIDIAKIENTGKVIFGSTVSLIDVDTDEEKRYQIVGDDEAEIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGG+K +EI +V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGDKVFEIDKVDYL 157 >gi|262369443|ref|ZP_06062771.1| transcription elongation factor [Acinetobacter johnsonii SH046] gi|262315511|gb|EEY96550.1| transcription elongation factor [Acinetobacter johnsonii SH046] Length = 158 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL + ERPRII AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPQGKLALEKELHQLKSIERPRIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + + R+ FG TV++ ++ ++K Y IVGD EAD + + Sbjct: 61 RVQDIEGKLGAAQVIDVKELEQNGRVVFGVTVTIENLDTEEQKTYMIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI++V +I Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVKVAYI 158 >gi|315126858|ref|YP_004068861.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913] gi|315015372|gb|ADT68710.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913] Length = 158 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G ++ EL + RP+I+ I++AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTVRGAKLLRDELNELKTVTRPKIVSDIADAREHGDLKENAEYHAAREQQGFCEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD++S L+S++ Sbjct: 64 EIEAKLSNMQMIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKSNLISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGK+ D + + P G+ YEI++V +I Sbjct: 124 SPIARGLIGKQADDAVIIKTPKGDVEYEIIEVEYI 158 >gi|294142073|ref|YP_003558051.1| transcription elongation factor GreA [Shewanella violacea DSS12] gi|293328542|dbj|BAJ03273.1| transcription elongation factor GreA [Shewanella violacea DSS12] Length = 158 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ ++ID++ M + RI FG TV+++ + ++ Y+IVG+ EA+++ L+ Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENNGRIIFGTTVTILNVETEEESTYRIVGEDEANIKDNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK L D +++ PGG YEI+ V +I Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGITEYEIIAVKYI 158 >gi|315453431|ref|YP_004073701.1| transcription elongation factor [Helicobacter felis ATCC 49179] gi|315132483|emb|CBY83111.1| transcription elongation factor [Helicobacter felis ATCC 49179] Length = 163 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 100/152 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ G++KI EL+ ++ ERP +I+ I AR +GDL ENAEY AAK+ Q + R+AE Sbjct: 4 PMSKYGYEKICAELKRLKEVERPCVIQEIDRAREHGDLKENAEYHAAKDKQAFIDARIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+VID ST+S +++FG+TV ++ ++ + Y IVG E+D GL+S SP Sbjct: 64 LSQTLANAQVIDPSTLSHQKVSFGSTVKILNLDNDKEFCYTIVGRMESDPSRGLISFGSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA++L+GK+ GD + V P GE +EIL + + Sbjct: 124 IAKSLMGKQKGDEVIVVLPSGENEFEILDIFY 155 >gi|254374096|ref|ZP_04989578.1| transcriptional elongation factor [Francisella novicida GA99-3548] gi|151571816|gb|EDN37470.1| transcriptional elongation factor [Francisella novicida GA99-3548] Length = 160 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGRVTYEIVAVEY 159 >gi|222824365|ref|YP_002575939.1| transcription elongation factor GreA [Campylobacter lari RM2100] gi|254799551|sp|B9KDP9|GREA_CAMLR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222539586|gb|ACM64687.1| transcription elongation factor GreA [Campylobacter lari RM2100] Length = 161 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 106/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G++K+++EL ++ ERP++++ I AR++GDL ENAEY AA+E Q EG Sbjct: 1 MQKEPMSKYGYEKLEKELEHLKKVERPKVVEEIDIARSHGDLKENAEYHAAREKQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL ++I+RA++ID ++ D + FG+ V + + S + Y IVG E +++ G +S Sbjct: 61 KIAELGDLISRAQIIDPASYEHDSVKFGSCVVVEDLESEKQSTYTIVGVNEGNLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARA++GK+ GD V P GE +EI+ + + Sbjct: 121 INSPIARAMLGKKEGDDFKVRLPKGESEFEIISIEY 156 >gi|153835620|ref|ZP_01988287.1| transcription elongation factor GreA [Vibrio harveyi HY01] gi|148867771|gb|EDL67020.1| transcription elongation factor GreA [Vibrio harveyi HY01] Length = 157 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E + +VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKPSVVQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|305432833|ref|ZP_07401991.1| transcription elongation factor GreA [Campylobacter coli JV20] gi|304443987|gb|EFM36642.1| transcription elongation factor GreA [Campylobacter coli JV20] Length = 161 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQTLIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+ Sbjct: 63 AELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKENKYTLVGTCEGDLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 123 SPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156 >gi|88857845|ref|ZP_01132487.1| transcription elongation factor greA [Pseudoalteromonas tunicata D2] gi|88819462|gb|EAR29275.1| transcription elongation factor greA [Pseudoalteromonas tunicata D2] Length = 158 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G + ++ EL + +RP+II I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 QIPMTVRGVELLRAELNELKTVKRPKIIADIAVAREHGDLKENAEYHAAREEQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ +VID++ M+ + ++ FG TV++V + + Y+IVGD EA++++ L+S+ Sbjct: 63 QEIEAKLSNVQVIDVTKMANNGKVIFGTTVTIVNVETDAEVTYRIVGDDEANIKNNLISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK + D ++++ P G YEI+ V +I Sbjct: 123 NSPIARGLVGKSVDDAVTISTPKGNVEYEIIAVEYI 158 >gi|51246041|ref|YP_065925.1| transcription elongation factor (GreA) [Desulfotalea psychrophila LSv54] gi|81641701|sp|Q6AL57|GREA_DESPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|50877078|emb|CAG36918.1| probable transcription elongation factor (GreA) [Desulfotalea psychrophila LSv54] Length = 161 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 107/155 (69%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+D+IP++ +G K+++EL + ER ++KAI AR +GDL ENAEY AAKE Q + E Sbjct: 1 MIDRIPMSVRGNKKLKEELLRLTRVERLDVVKAIEVAREHGDLKENAEYHAAKERQGMIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L++ + RAEVID +S R+ FG V L++ ++ ++ YQ++G +E++V++G + Sbjct: 61 ARIMDLKDKLGRAEVIDCLQVSCKRVVFGTVVVLLDLDTDEEVTYQLLGPEESEVKAGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI R+++ KE GD + PGG + +E++++ Sbjct: 121 SVLSPIGRSMLSKEEGDEVVTKTPGGTREFEVVEI 155 >gi|82523822|emb|CAI78564.1| transcription elongation factor GreA [uncultured candidate division OP8 bacterium] Length = 156 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 109/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G K++ EL+ ++ +RP +KAI EAR +GDL ENA+++ AK+ Q + G Sbjct: 1 MERYPITPEGLKKLEAELKRLREVDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A L+ I+ A VID S +SG+R+ FGA V L ++G+ Y++VG+ EAD++ G +S Sbjct: 61 RIAYLQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+AR LI +E+G+ + P G K++EI+++ + Sbjct: 121 ITSPLARGLIRREVGEQAKIAVPSGIKSFEIVKIEF 156 >gi|15599949|ref|NP_253443.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAO1] gi|107103852|ref|ZP_01367770.1| hypothetical protein PaerPA_01004923 [Pseudomonas aeruginosa PACS2] gi|116052902|ref|YP_793219.1| transcription elongation factor GreA [Pseudomonas aeruginosa UCBPP-PA14] gi|152984538|ref|YP_001350797.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7] gi|218893850|ref|YP_002442719.1| transcription elongation factor GreA [Pseudomonas aeruginosa LESB58] gi|254238509|ref|ZP_04931832.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719] gi|254244343|ref|ZP_04937665.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192] gi|296391582|ref|ZP_06881057.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAb1] gi|313109736|ref|ZP_07795676.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016] gi|25453009|sp|Q9HV46|GREA_PSEAE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|9951018|gb|AAG08141.1|AE004889_4 transcription elongation factor GreA [Pseudomonas aeruginosa PAO1] gi|115588123|gb|ABJ14138.1| transcription elongation factor GreA [Pseudomonas aeruginosa UCBPP-PA14] gi|126170440|gb|EAZ55951.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719] gi|126197721|gb|EAZ61784.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192] gi|150959696|gb|ABR81721.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7] gi|218774078|emb|CAW29894.1| transcription elongation factor GreA [Pseudomonas aeruginosa LESB58] gi|310882178|gb|EFQ40772.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016] Length = 158 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+ Sbjct: 63 RDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGK GD + V PGG+ YEI++V I Sbjct: 123 NSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158 >gi|154175152|ref|YP_001408890.1| transcription elongation factor GreA [Campylobacter curvus 525.92] gi|112803753|gb|EAU01097.1| biopolymer transport ExbB protein [Campylobacter curvus 525.92] Length = 162 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI+ EL+ +Q +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE Sbjct: 4 PMTIYGYEKIEAELKDLRQVQRPQIVIEIDIARSHGDLKENAEYHAAKEKQAFIDTRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ AEVID S+ DR+ FG++V++++ + + Y IVG E+++ GL+SI+SP Sbjct: 64 LSTLLANAEVIDPSSYEHDRVRFGSSVTIMDVETEIEHTYTIVGISESNLDRGLISINSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+GK GD +++N P G E+++V + Sbjct: 124 LARQLLGKAEGDEVALNLPNGRSDVEVVEVCY 155 >gi|86151410|ref|ZP_01069625.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 260.94] gi|86153776|ref|ZP_01071979.1| transcription elongation factor greA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612714|ref|YP_001000001.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|167004957|ref|ZP_02270715.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|315123863|ref|YP_004065867.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166200654|sp|A1VY10|GREA_CAMJJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|85841757|gb|EAQ59004.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 260.94] gi|85842737|gb|EAQ59949.1| transcription elongation factor greA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250181|gb|EAQ73139.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|315017585|gb|ADT65678.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 161 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+ Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKESKYTLVGICEGDLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|49080972|gb|AAT50079.1| PA4755 [synthetic construct] Length = 159 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+ Sbjct: 63 RDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGK GD + V PGG+ YEI++V I Sbjct: 123 NSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158 >gi|78357555|ref|YP_389004.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219960|gb|ABB39309.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 235 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF+ ++++L R ++ERP +I+AI EAR GDLSENA Y AA+E Q + E Sbjct: 73 MSSIPISVEGFELVKRDLE-RLKQERPAVIQAIKEAREEGDLSENAGYDAARERQGMLEA 131 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID+ T+ G+R+ +GAT+ L + +G+ + Y +VG E D G +S Sbjct: 132 RIGNIESRMARFNVIDMRTLGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSIS 191 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A+A++GKE GD + V+AP G+ YEI+ V + Sbjct: 192 VLSPVAKAVLGKEEGDEVVVDAPRGKIHYEIVSVSF 227 >gi|303248722|ref|ZP_07334975.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans JJ] gi|302489887|gb|EFL49815.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans JJ] Length = 162 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D IP+T +GF ++++EL R ++ERP +I AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MDSIPITVQGFKRLERELE-RLKKERPEVILAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINFIESRMPRFNVIDLATLDGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ +AL+GK GD I V AP G+ YEI+ + + Sbjct: 120 ILSPVGQALLGKYEGDEIVVEAPRGKINYEIISIAF 155 >gi|257454668|ref|ZP_05619924.1| transcription elongation factor GreA [Enhydrobacter aerosaccus SK60] gi|257447978|gb|EEV22965.1| transcription elongation factor GreA [Enhydrobacter aerosaccus SK60] Length = 158 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPQGHAALEEELKQLKTVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + AEVID + + R+ FG TV + ++ ++K Y+IVGD EAD ++ +SI Sbjct: 63 RDIEAKLGGAEVIDPLKLPQEGRVVFGVTVVIENLDTEEQKRYKIVGDDEADFKANKISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P GE YEI++VL+ Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGEVEYEIVEVLY 157 >gi|89072566|ref|ZP_01159138.1| transcription elongation factor GreA [Photobacterium sp. SKA34] gi|90580532|ref|ZP_01236337.1| transcription elongation factor GreA [Vibrio angustum S14] gi|89051670|gb|EAR57123.1| transcription elongation factor GreA [Photobacterium sp. SKA34] gi|90438190|gb|EAS63376.1| transcription elongation factor GreA [Photobacterium angustum S14] Length = 157 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLRSELEVLLKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID+ TM ++ FG T++L++ ++ ++ Y IVGD EA+++ L+ Sbjct: 60 QIRDIEYKLSVAQIIDVKTMPNTGKVIFGTTITLLDLDTDNEVTYCIVGDDEANIKENLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG+K +EI++V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVAITTPGGQKEFEIVEVKYI 157 >gi|315932570|gb|EFV11502.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 327] Length = 161 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPTVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+ Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|152998029|ref|YP_001342864.1| transcription elongation factor GreA [Marinomonas sp. MWYL1] gi|150838953|gb|ABR72929.1| transcription elongation factor GreA [Marinomonas sp. MWYL1] Length = 158 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G ++++EL + RPR+I I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KVPMTVEGEARLREELNHLKTVVRPRVIADIATAREHGDLKENAEYHAAREEQGFAEGRI 62 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E + ++VID+ + + ++ FG TV+L ++ + Y+IVGD EADV+ +S Sbjct: 63 KEIEGKLADSQVIDVKALPASSKVIFGTTVTLFNVDTEETVTYKIVGDDEADVKEKKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIA+A+IGKE GD +++ P GE YEI +V ++ Sbjct: 123 ASPIAKAIIGKEEGDEVAIQVPSGEVVYEIEKVEYL 158 >gi|332703955|ref|ZP_08424043.1| transcription elongation factor GreA [Desulfovibrio africanus str. Walvis Bay] gi|332554104|gb|EGJ51148.1| transcription elongation factor GreA [Desulfovibrio africanus str. Walvis Bay] Length = 163 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF ++++EL +++RP II+AI EAR GDL EN+ Y AA+E L E Sbjct: 1 MSSIPISVEGFQRLEKEL-HNLKKDRPEIIQAIKEAREEGDLRENSGYHAARERLGLLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ +E+ + + +ID++T+ GD+ FGATV + + ++GDKK Y ++G EA+ G +S Sbjct: 60 RISFIESRMPQFNIIDLATLGGDKAIFGATVEIEDMDTGDKKRYTLLGPDEAEPTKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ +AL+GKE GD I VNAP G YEI+ + + Sbjct: 120 ILSPVGQALLGKEAGDEIVVNAPRGRIQYEIISIRF 155 >gi|90412476|ref|ZP_01220479.1| transcription elongation factor GreA [Photobacterium profundum 3TCK] gi|90326513|gb|EAS42919.1| transcription elongation factor GreA [Photobacterium profundum 3TCK] Length = 157 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQTLREELEVLLKR-RPIISKAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ ++VID++ M ++ FG TV L++ N+ D+ Y IVGD EAD++ L+ Sbjct: 60 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDEVMYCIVGDDEADIKKNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG K +EI QV +I Sbjct: 120 SVNSPIARGLIGKLEGDEVSIFTPGGVKEFEIEQVQYI 157 >gi|86149591|ref|ZP_01067821.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni CF93-6] gi|283955709|ref|ZP_06373200.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 1336] gi|85839859|gb|EAQ57118.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni CF93-6] gi|283792664|gb|EFC31442.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 1336] Length = 161 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+ Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|50085902|ref|YP_047412.1| transcription elongation factor GreA [Acinetobacter sp. ADP1] gi|49531878|emb|CAG69590.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ADP1] Length = 158 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + ++ID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI+ V +I Sbjct: 121 SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI 158 >gi|323144905|ref|ZP_08079468.1| transcription elongation factor GreA [Succinatimonas hippei YIT 12066] gi|322415303|gb|EFY06074.1| transcription elongation factor GreA [Succinatimonas hippei YIT 12066] Length = 191 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 109/161 (67%), Gaps = 5/161 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T++G +++EL + ERPRI+ AI+EAR++GDLSENAEY AAKE Q L E Sbjct: 29 MEQTPMTARGEMLLRKELERLKLVERPRIVAAIAEARSHGDLSENAEYDAAKEEQGLCEA 88 Query: 62 RMAELENIITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ ++E + A +ID++ + ++ FG TV++++ ++ + Y+IVG+ EAD+Q Sbjct: 89 RIKDIEAKLATANIIDVTKLKPAGGAPLKVVFGCTVTVIDVDTDKEVTYKIVGEDEADIQ 148 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S L+S +PIA+ L+GK GD +N P G+ TYEI ++ + Sbjct: 149 SNLISYKTPIAKGLLGKIEGDEAQINIPRGQVTYEIAEIKY 189 >gi|303327141|ref|ZP_07357583.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3] gi|302863129|gb|EFL86061.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3] Length = 162 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +G+ K+++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 4 IPISVQGYKKLEEEL-ARLKSERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 62 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + +V+D+ +SGD++ FG+TV + + +SG+ +N+ I+G EAD G +S S Sbjct: 63 YIESRLALYQVVDLDKLSGDKVIFGSTVEVEDVDSGESRNFTILGPDEADPSKGSISFLS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ +AL+GKE GD ++V P G TYE++ + + Sbjct: 123 PVGQALLGKEEGDEVTVEIPRGRVTYEVVSIAF 155 >gi|299769004|ref|YP_003731030.1| transcription elongation factor GreA [Acinetobacter sp. DR1] gi|298699092|gb|ADI89657.1| transcription elongation factor GreA [Acinetobacter sp. DR1] Length = 158 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+ ID+ T+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|255318889|ref|ZP_05360115.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter radioresistens SK82] gi|262378856|ref|ZP_06072013.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] gi|255304145|gb|EET83336.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter radioresistens SK82] gi|262300141|gb|EEY88053.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] Length = 158 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 102/156 (65%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL + ERPRI AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKTALEKELHQLKTVERPRITAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VIDI + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQVIDIKDLEQNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD + P GE YEI+ V +I Sbjct: 123 NSPIARGLLGKSEGDEAKIVTPQGEVEYEIVSVEYI 158 >gi|37680902|ref|NP_935511.1| transcription elongation factor GreA [Vibrio vulnificus YJ016] gi|37199652|dbj|BAC95482.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 165 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 9 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 67 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 68 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD ++++ PGG K +EI V + Sbjct: 128 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 164 >gi|27365048|ref|NP_760576.1| transcription elongation factor GreA [Vibrio vulnificus CMCP6] gi|320155431|ref|YP_004187810.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O] gi|31076695|sp|Q8DBW9|GREA_VIBVU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27361194|gb|AAO10103.1| Transcription elongation factor GreA [Vibrio vulnificus CMCP6] gi|319930743|gb|ADV85607.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O] Length = 157 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD ++++ PGG K +EI V + Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 156 >gi|157164259|ref|YP_001466449.1| transcription elongation factor GreA [Campylobacter concisus 13826] gi|112801597|gb|EAT98941.1| transcription elongation factor GreA [Campylobacter concisus 13826] Length = 161 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 103/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI+ EL+ + +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE Sbjct: 4 PMTMHGYEKIEAELKDLRLVQRPQIVTEIDIARSHGDLKENAEYHAAKEKQAFIDARIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ AEVID S+ DR+ FG++V+++++ + + Y IVG E+D+ G +SI+SP Sbjct: 64 LSALLANAEVIDPSSYEHDRVRFGSSVTIMDEETEVEHTYTIVGVSESDLDKGYISINSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK GD +++N P G EI+++ + Sbjct: 124 LAKQLLGKAEGDEVALNLPKGRSDVEIVKICY 155 >gi|153951319|ref|YP_001398665.1| transcription elongation factor GreA [Campylobacter jejuni subsp. doylei 269.97] gi|189042239|sp|A7H585|GREA_CAMJD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152938765|gb|ABS43506.1| transcription elongation factor GreA [Campylobacter jejuni subsp. doylei 269.97] Length = 161 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 101/154 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+ Sbjct: 63 VELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARA++GK+ GD V P GE +EIL + + Sbjct: 123 SPIARAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|88799656|ref|ZP_01115231.1| transcription elongation factor GreA [Reinekea sp. MED297] gi|88777550|gb|EAR08750.1| transcription elongation factor GreA [Reinekea sp. MED297] Length = 158 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +Q EL+ + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTVEGELALQAELKELKSVKRPEVIAAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A++E ++ ++VI++ + ++ FG TV+L+ + Y+IVGD EA+V+ +S+ Sbjct: 63 ADIEGKLSASQVINVHDIPNTGKVIFGTTVTLLNTETDQGVTYKIVGDDEANVKVNKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 +SPIARALIGKE GD+++V PGG YEI Sbjct: 123 NSPIARALIGKEEGDVVNVKTPGGTVEYEI 152 >gi|313141419|ref|ZP_07803612.1| transcription elongation factor greA [Helicobacter canadensis MIT 98-5491] gi|313130450|gb|EFR48067.1| transcription elongation factor greA [Helicobacter canadensis MIT 98-5491] Length = 163 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 7 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP Sbjct: 67 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 127 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 158 >gi|224417876|ref|ZP_03655882.1| transcription elongation factor GreA [Helicobacter canadensis MIT 98-5491] Length = 159 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP Sbjct: 63 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 123 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 154 >gi|57242062|ref|ZP_00370002.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis RM3195] gi|57017254|gb|EAL54035.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis RM3195] Length = 161 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MEKEAMSSFGFEKLSAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL I++RA+VID ++ + + FG++V +++ S + Y +VG E+D++ G +S Sbjct: 61 RIAELGGILSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARA++GK+ GD V P GE +EIL V + Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEILSVTY 156 >gi|330807473|ref|YP_004351935.1| transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375581|gb|AEA66931.1| Transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 160 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E Sbjct: 3 ITKYPMTVQGAKALEEEHAFLTKVERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 63 RVRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V PGG YEI++V I Sbjct: 123 SVGSPIARALIAKEEGDVVVVKTPGGVIEYEIVEVRHI 160 >gi|212634061|ref|YP_002310586.1| transcription elongation factor GreA [Shewanella piezotolerans WP3] gi|212555545|gb|ACJ27999.1| Prokaryotic transcription elongation factor GreA [Shewanella piezotolerans WP3] Length = 153 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/149 (44%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G +++++EL + E RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++E + Sbjct: 5 GAEQLRKELDILKFERRPAIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDIEGKL 64 Query: 71 TRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A++ID++TM R+ FG TV+++ ++ ++ Y+IVG+ EA+V+ L+S+SSPIAR Sbjct: 65 SHAQIIDVTTMPNTGRVIFGTTVTILNIDTDEEVTYRIVGEDEANVKENLLSVSSPIARG 124 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+GK + D IS+ PGG +EI +V +I Sbjct: 125 LVGKSVDDEISITTPGGTSDFEITKVEYI 153 >gi|209694181|ref|YP_002262109.1| transcription elongation factor GreA [Aliivibrio salmonicida LFI1238] gi|208008132|emb|CAQ78274.1| transcription elongation factor GreA [Aliivibrio salmonicida LFI1238] Length = 157 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTIRGEKLLRDELEVLLKR-RPVISKAIGEARELGDLKENAEYHAAREDQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M+ ++ FGATV+L++ ++ DK YQIV D EA+++ G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGATVTLLDVDTEDKVKYQIVADDEANIKEGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK + D +S+ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKLVEDEVSIRTPGGTKEFEIDAVEYI 157 >gi|315638220|ref|ZP_07893402.1| transcription elongation factor GreA [Campylobacter upsaliensis JV21] gi|315481756|gb|EFU72378.1| transcription elongation factor GreA [Campylobacter upsaliensis JV21] Length = 161 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MEKEAMSSFGFEKLNAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL I++RA+VID ++ D + FG++V +++ S + Y +VG E+D++ G +S Sbjct: 61 RIAELGGILSRAQVIDPASYPHDSVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARA++GK+ GD V P GE +EI+ + + Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEIISIAY 156 >gi|291277117|ref|YP_003516889.1| transcription elongation factor [Helicobacter mustelae 12198] gi|290964311|emb|CBG40161.1| transcription elongation factor [Helicobacter mustelae 12198] Length = 161 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K++ EL+ ++ +RP I+K I AR++GDL ENAEY AAKE Q E R+ + Sbjct: 3 PITQYGYEKLRAELKDLKEIQRPNIVKDIDIARSHGDLKENAEYHAAKEKQLFIEARIND 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +++ ++ID T+S ++++FG++V + ++ Y IVG E+D GL+S SP Sbjct: 63 LTLLLSNVQIIDPHTLSHEKVSFGSSVKIRNLDTEKTFCYTIVGSVESDPARGLISFGSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA++LIGK +GD +S+ P GE +EIL+V + Sbjct: 123 IAKSLIGKIVGDEVSIVLPNGESDFEILEVFY 154 >gi|224437954|ref|ZP_03658896.1| transcription elongation factor GreA [Helicobacter cinaedi CCUG 18818] Length = 158 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 107/151 (70%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ EL Sbjct: 1 MTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSPI Sbjct: 61 GLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+GK+ GD +S+ P GE +EIL+V + Sbjct: 121 AKALMGKKQGDEVSIMLPSGENEFEILEVFY 151 >gi|254458168|ref|ZP_05071594.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] gi|207085004|gb|EDZ62290.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] Length = 165 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +DK+ P+T G++K+Q E+R ++ +RP I+KAI EA +GDL ENAEY AAKE Q + Sbjct: 1 MDKVEPMTLFGYEKLQAEVRDLKEVKRPEIVKAIEEALEHGDLKENAEYHAAKEAQRNID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+L +I+ + ++D S + +I+FG+TV + + +S + Y IVG E++ GL+ Sbjct: 61 NRLADLASILGCSRIVDPSELEHAKISFGSTVVMTDMDSDETVTYTIVGGCESNPDMGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+G+E GD + V PGG K YEI +V + Sbjct: 121 SFASPLAKQLLGREEGDEVKVVLPGGAKEYEIEEVKY 157 >gi|93005658|ref|YP_580095.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis K5] gi|123264676|sp|Q1QCJ2|GREA_PSYCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|92393336|gb|ABE74611.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis K5] Length = 158 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +S+ Sbjct: 63 RDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G YEI++V++ Sbjct: 123 NSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157 >gi|242308872|ref|ZP_04808027.1| transcription elongation factor GreA [Helicobacter pullorum MIT 98-5489] gi|239524536|gb|EEQ64402.1| transcription elongation factor GreA [Helicobacter pullorum MIT 98-5489] Length = 159 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + S ++ Y IVG E++ GL+S SP Sbjct: 63 LTQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD ++++ P G+ YEIL++ + Sbjct: 123 LAKQLLGKVVGDEVTISLPKGKVDYEILEICY 154 >gi|262278055|ref|ZP_06055840.1| transcription elongation factor [Acinetobacter calcoaceticus RUH2202] gi|262258406|gb|EEY77139.1| transcription elongation factor [Acinetobacter calcoaceticus RUH2202] Length = 158 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + + ID+ T+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAVQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|148652641|ref|YP_001279734.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1] gi|189042246|sp|A5WDP3|GREA_PSYWF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148571725|gb|ABQ93784.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1] Length = 158 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID +T+ + R+ FG TV + ++ ++K YQIVGD EAD ++ +S+ Sbjct: 63 RDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G +EI++V++ Sbjct: 123 NSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY 157 >gi|154149289|ref|YP_001406861.1| transcription elongation factor GreA [Campylobacter hominis ATCC BAA-381] gi|166200653|sp|A7I2X0|GREA_CAMHC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|153805298|gb|ABS52305.1| transcription elongation factor GreA [Campylobacter hominis ATCC BAA-381] Length = 162 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 103/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI EL+ + +RP I++ I AR++GDL EN+EY AA+E Q E R+AE Sbjct: 5 PMTLYGYEKITAELKDLKMVQRPNIVRDIDIARSHGDLKENSEYHAAREKQAFIENRIAE 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +I++RA+VID ST D++ FG+TV++++ + +K Y IVG E+D+ G ++I++P Sbjct: 65 ISDIVSRAKVIDPSTYEHDKVKFGSTVTIMDVETELEKTYVIVGISESDISKGYININTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+GK GD + +N P G EI+ V + Sbjct: 125 LARQLLGKVEGDDVILNLPNGVSEIEIVSVEY 156 >gi|302191231|ref|ZP_07267485.1| transcription elongation factor GreA [Lactobacillus iners AB-1] gi|309806139|ref|ZP_07700158.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|309808375|ref|ZP_07702277.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|309810229|ref|ZP_07704074.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|312871828|ref|ZP_07731916.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|312873001|ref|ZP_07733061.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|312875557|ref|ZP_07735558.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2053A-b] gi|325912092|ref|ZP_08174490.1| transcription elongation factor GreA [Lactobacillus iners UPII 143-D] gi|325912612|ref|ZP_08174995.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|329920134|ref|ZP_08276965.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] gi|308167494|gb|EFO69654.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|308168382|gb|EFO70498.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|308169501|gb|EFO71549.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|311088811|gb|EFQ47254.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2053A-b] gi|311091523|gb|EFQ49907.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|311092770|gb|EFQ51126.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|325476042|gb|EGC79210.1| transcription elongation factor GreA [Lactobacillus iners UPII 143-D] gi|325478033|gb|EGC81162.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|328936588|gb|EGG33032.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] Length = 161 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SPIA+AL+GK+ GD++S+N PGG Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147 >gi|15672618|ref|NP_266792.1| transcription elongation factor [Lactococcus lactis subsp. lactis Il1403] gi|281491116|ref|YP_003353096.1| transcription elongation factor GreA [Lactococcus lactis subsp. lactis KF147] gi|13878507|sp|Q9CHT2|GREA_LACLA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|12723539|gb|AAK04734.1|AE006296_8 transcription elongation factor GreA [Lactococcus lactis subsp. lactis Il1403] gi|281374866|gb|ADA64385.1| Transcription elongation factor GreA [Lactococcus lactis subsp. lactis KF147] gi|326406137|gb|ADZ63208.1| transcription elongation factor GreA [Lactococcus lactis subsp. lactis CV56] Length = 156 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 105/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTQEGLDKLKLELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD SG + Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI++V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155 >gi|57237342|ref|YP_178355.1| transcription elongation factor GreA [Campylobacter jejuni RM1221] gi|88597201|ref|ZP_01100436.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 84-25] gi|148926989|ref|ZP_01810665.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8486] gi|157414583|ref|YP_001481839.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81116] gi|205356059|ref|ZP_03222827.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8421] gi|218561949|ref|YP_002343728.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|25453017|sp|Q9PIK9|GREA_CAMJE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|73621018|sp|Q5HWI0|GREA_CAMJR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|172047031|sp|A8FK75|GREA_CAMJ8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|57166146|gb|AAW34925.1| transcription elongation factor GreA [Campylobacter jejuni RM1221] gi|88190262|gb|EAQ94236.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359655|emb|CAL34440.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844397|gb|EDK21506.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8486] gi|157385547|gb|ABV51862.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 81116] gi|205346183|gb|EDZ32818.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8421] gi|284925562|gb|ADC27914.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni IA3902] gi|307747227|gb|ADN90497.1| Transcription elongation factor greA [Campylobacter jejuni subsp. jejuni M1] gi|315057711|gb|ADT72040.1| Transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni S3] gi|315927206|gb|EFV06556.1| Transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930041|gb|EFV09180.1| Transcription elongation factor [Campylobacter jejuni subsp. jejuni 305] Length = 161 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+ Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|59711083|ref|YP_203859.1| transcription elongation factor GreA [Vibrio fischeri ES114] gi|197336313|ref|YP_002155232.1| transcription elongation factor GreA [Vibrio fischeri MJ11] gi|59479184|gb|AAW84971.1| transcription elongation factor [Vibrio fischeri ES114] gi|197317803|gb|ACH67250.1| transcription elongation factor GreA [Vibrio fischeri MJ11] Length = 157 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRGEKLLRDELEVLLKR-RPLISKAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M+ ++ FG TV+L++ N+ ++ YQIV D EA+++ G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDEEVKYQIVADDEANIKEGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVNIQTPGGTKEFEIDAVDYI 157 >gi|309803130|ref|ZP_07697227.1| transcription elongation factor GreA [Lactobacillus iners LactinV 11V1-d] gi|312874272|ref|ZP_07734306.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|308164638|gb|EFO66888.1| transcription elongation factor GreA [Lactobacillus iners LactinV 11V1-d] gi|311090342|gb|EFQ48752.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] Length = 161 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEIGTDDSEMYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SPIA+AL+GK+ GD++S+N PGG Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147 >gi|71065373|ref|YP_264100.1| transcription elongation factor GreA [Psychrobacter arcticus 273-4] gi|123775615|sp|Q4FTJ2|GREA_PSYA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71038358|gb|AAZ18666.1| GreA transcription elongation factor [Psychrobacter arcticus 273-4] Length = 158 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A++ID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +S+ Sbjct: 63 RDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G YEI++V++ Sbjct: 123 NSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157 >gi|259500541|ref|ZP_05743443.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|315653624|ref|ZP_07906544.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|259167925|gb|EEW52420.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|315488986|gb|EFU78628.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] Length = 174 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 14 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 73 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 74 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 133 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SPIA+AL+GK+ GD++S+N PGG Sbjct: 134 ISNDSPIAKALLGKKKGDVVSINTPGG 160 >gi|148244934|ref|YP_001219628.1| transcription elongation factor GreA [Candidatus Vesicomyosocius okutanii HA] gi|166201193|sp|A5CVW9|GREA_VESOH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146326761|dbj|BAF61904.1| transcription elongation factor GreA [Candidatus Vesicomyosocius okutanii HA] Length = 159 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IPVT+ G ++ L + RPRII+ I ARA+GDL ENAEY AAKE Q+ EG Sbjct: 1 MNNIPVTAFGAKALEAALLKLKDVSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++R ++ID++ +S D R FG T++L+ + YQIVG+ EAD+ + Sbjct: 61 RIKEIELKLSRMQIIDVTKLSQDGRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SPIA AL+G E GD + V AP G+ Y+IL V + Sbjct: 121 SCHSPIASALMGNEEGDKVIVKAPKGDIVYKILSVEY 157 >gi|226951540|ref|ZP_03822004.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ATCC 27244] gi|294651182|ref|ZP_06728514.1| transcription elongation factor GreA [Acinetobacter haemolyticus ATCC 19194] gi|226837732|gb|EEH70115.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ATCC 27244] gi|292822935|gb|EFF81806.1| transcription elongation factor GreA [Acinetobacter haemolyticus ATCC 19194] Length = 158 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 103/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGACQVIDVKDLEKNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD + P GE YEI+ V ++ Sbjct: 123 NSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158 >gi|309805184|ref|ZP_07699236.1| transcription elongation factor GreA [Lactobacillus iners LactinV 09V1-c] gi|308165418|gb|EFO67649.1| transcription elongation factor GreA [Lactobacillus iners LactinV 09V1-c] Length = 161 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SPIA+AL+GK+ GD++S+N PGG Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147 >gi|212702631|ref|ZP_03310759.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098] gi|212673903|gb|EEB34386.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098] Length = 164 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V IP++ +G+ ++++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 3 VTNIPISKQGYKRLEEEL-ARLKSERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEA 61 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + +VID+ +SGD++ FG+TV + + ++ + + Y I+G EA+ G +S Sbjct: 62 RIKYIESRMALYQVIDLDKLSGDKVIFGSTVEVEDVDTEESRTYTILGPDEAEPAKGSIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ +AL+GKE+GD +SV+ P G TYEI+ + + Sbjct: 122 FLSPVGQALLGKEVGDEVSVDIPRGRVTYEIVDITF 157 >gi|262371951|ref|ZP_06065230.1| transcription elongation factor GreB [Acinetobacter junii SH205] gi|262311976|gb|EEY93061.1| transcription elongation factor GreB [Acinetobacter junii SH205] Length = 158 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 103/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGACQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+GK GD + P GE YEI+ V ++ Sbjct: 123 NSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158 >gi|332978289|gb|EGK15017.1| transcription elongation factor GreA [Psychrobacter sp. 1501(2011)] Length = 158 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+ Sbjct: 3 RYPMTPQGHAALEAELKQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E ++ A+VID +T+ + R+ FG TV + ++ ++K YQIVGD EAD ++ +S+ Sbjct: 63 RDIEAKLSGAQVIDPTTLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIAR LIGK GD + P G +EI++V++ Sbjct: 123 NSPIARGLIGKSEGDEARIETPSGVVEFEIIEVIY 157 >gi|104780017|ref|YP_606515.1| transcription elongation factor GreA [Pseudomonas entomophila L48] gi|95109004|emb|CAK13700.1| transcription elongation factor (Transcript cleavage factor greA) [Pseudomonas entomophila L48] Length = 160 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T++ ++ FG TV L + ++ YQIVG+ EADV+ G + Sbjct: 63 RIRDIEGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKL 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +PIARA+IGKE GD + V P G YEI++V I Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160 >gi|317154377|ref|YP_004122425.1| transcription elongation factor GreA [Desulfovibrio aespoeensis Aspo-2] gi|316944628|gb|ADU63679.1| transcription elongation factor GreA [Desulfovibrio aespoeensis Aspo-2] Length = 164 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/157 (42%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP++ +GF+KI++EL + +RP II+AI EAR GDLSENA Y AA+E Q + E Sbjct: 1 MDRIPISKQGFEKIKKELE-ELKAQRPAIIQAIKEAREEGDLSENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ + + + +V+D+ T+ G R FGATV + + ++ + K + ++G +AD +SG +S Sbjct: 60 RITYINSRMPLFDVLDLDTLGGSRAIFGATVEIEDMDTEETKRFTLLGPDDADHKSGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ RAL+GKE+GD V+AP G YEI+ + ++ Sbjct: 120 VLSPMGRALMGKEVGDEAIVDAPRGRIEYEIVSIQFL 156 >gi|148979040|ref|ZP_01815285.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3] gi|145962013|gb|EDK27301.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3] Length = 157 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL R + RP I AI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGAQQLRDELD-RLLKLRPVISAAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G + Sbjct: 60 QIRDIEYKLSLAQIIDVTQMENTGKIIFGTTVTLIDVDTDEEYRYQIVSEDEADIKTGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIAR LIGK GD + ++ PGG+K YEI +V +I Sbjct: 120 SVKSPIARGLIGKMEGDEVMISTPGGDKDYEIDKVEYI 157 >gi|157376534|ref|YP_001475134.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3] gi|157318908|gb|ABV38006.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3] Length = 153 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++EL + + E+RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++ Sbjct: 1 MTVVGAERLRKELDYLKFEKRPVIAQAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ ++ID++ M RI FG TV+++ ++ + Y+IVG+ EAD++ L+S+SSP Sbjct: 61 EGKLSNVQIIDVTKMPNTGRIIFGTTVTILNIDTDVEVTYRIVGEDEADIKENLISVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK L D +++ PGG YEI V +I Sbjct: 121 IARGLIGKNLDDEVNIATPGGITEYEITAVEYI 153 >gi|57168415|ref|ZP_00367549.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228] gi|57020223|gb|EAL56897.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228] Length = 161 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+ Sbjct: 63 AELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 123 SPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156 >gi|293609985|ref|ZP_06692287.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828437|gb|EFF86800.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123193|gb|ADY82716.1| transcription elongation factor, cleaves 3' nucleotide of paused Mrna [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + ++VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGASQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|77360173|ref|YP_339748.1| transcription elongation factor greA [Pseudoalteromonas haloplanktis TAC125] gi|76875084|emb|CAI86305.1| transcription elongation factor greA [Pseudoalteromonas haloplanktis TAC125] Length = 158 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G D +++EL + RP+I+ I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTVRGADLLRKELTELKTVTRPKIVSDIAVAREHGDLKENAEYHAAREQQGFCEGRIQ 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EA ++ +S++ Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDVEVKYQIVGDDEASIKDNRISVN 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR LIGK+ D +++ P G YEI++V +I Sbjct: 124 SPIARGLIGKQADDAVNIETPKGTVEYEIIEVEYI 158 >gi|319651649|ref|ZP_08005776.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2] gi|317396716|gb|EFV77427.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2] Length = 158 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 98/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTQAGKEKLEQELEYLKSVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I M+GD + G +V+ VE GD++ Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIQEEEMAGDIVGLGRSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++LIG+ +GD ++V PGGE I+ + Sbjct: 127 PIAKSLIGRTVGDEVTVQTPGGEMNVRIVSI 157 >gi|170719896|ref|YP_001747584.1| transcription elongation factor GreA [Pseudomonas putida W619] gi|169757899|gb|ACA71215.1| transcription elongation factor GreA [Pseudomonas putida W619] Length = 160 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T+ ++ FG TV L + ++ +YQIVG+ EADV+ G + Sbjct: 63 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVSYQIVGEDEADVKQGKL 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +PIARA+IGKE GD + V P G YEI++V I Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGSVEYEIVEVKHI 160 >gi|116515169|ref|YP_802798.1| hypothetical protein BCc_237 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285435|sp|Q057J4|GREA_BUCCC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116257023|gb|ABJ90705.1| transcription elongation factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 159 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +KIP+T +GF+K++ EL+ + RP I+KAI+ AR GDL ENAEY +A+E Q+ E Sbjct: 1 MFNKIPMTLRGFNKLKSELKKLKYITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+EN + RA++IDI+ + I FG+TV++++ ++ + Y IVGD EA+ + Sbjct: 61 NRICEIENKLLRAQIIDITKIPFKGIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFS 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI SP++RALIGK+ DII VN P G Y I ++ +I Sbjct: 121 ISIHSPMSRALIGKKKNDIIKVNTPTGYIKYIIKKIEYI 159 >gi|254461545|ref|ZP_05074961.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2083] gi|206678134|gb|EDZ42621.1| transcription elongation factor GreA [Rhodobacteraceae bacterium HTCC2083] Length = 151 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/152 (50%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EGR+ L Sbjct: 1 MTKSGHTAVEVELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEGRVKLL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I++ A VID +T++G I FGAT++LV++++ ++K +QIVG+ EA+V++GL++I SPI Sbjct: 61 EGILSLAAVIDPATLNG-TIKFGATITLVDEDTDEEKTWQIVGEHEANVEAGLLNIKSPI 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK+ GD + V PGG K+YE+L++ +I Sbjct: 120 ARALIGKDEGDSVEVRTPGGSKSYEVLKIEFI 151 >gi|81428983|ref|YP_395983.1| transcription elongation factor GreA [Lactobacillus sakei subsp. sakei 23K] gi|78610625|emb|CAI55676.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus sakei subsp. sakei 23K] Length = 157 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 66/152 (43%), Positives = 102/152 (67%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T++G + + +EL + +RP +I I AR++GDLSEN+EY++AK+ Q+ E R+ Sbjct: 5 KFPMTAEGKENLAKELENLKMVKRPEVIDRIKIARSFGDLSENSEYESAKDEQSSLETRI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+EN++ AEVID+ ++ D IA G TVS + G+++ YQIVG E+D +G +S Sbjct: 65 VEVENMLRFAEVIDVDNIAVDEIAVGKTVSFTDDEDGEEETYQIVGAAESDPFNGKISND 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+AL+GK +GD + V PGG+ I +V Sbjct: 125 SPIAQALVGKHVGDKVVVQTPGGDMHVTITEV 156 >gi|283955240|ref|ZP_06372741.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 414] gi|283793277|gb|EFC32045.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 414] Length = 161 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+ Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+ Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEIISINY 156 >gi|319760241|ref|YP_004124179.1| transcription elongation factor GreA [Candidatus Blochmannia vafer str. BVAF] gi|318038955|gb|ADV33505.1| transcription elongation factor GreA [Candidatus Blochmannia vafer str. BVAF] Length = 160 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G ++++++L + + RP I K+ISEAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KFPMTLRGVEQLREKLDYLKNVLRPIITKSISEARRHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ ++D++ + D ++ FG TV + + KK Y+IVGD E++++ ++SI Sbjct: 63 REIEYKLSNVYIVDVTKVISDKKVVFGVTVCIENVITQCKKIYRIVGDDESNLKKNMISI 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIA+ LIG + GDI+ ++ P G+ Y I+++ ++ Sbjct: 123 SSPIAQGLIGHKEGDIVLISTPNGKIEYRIVKIEYL 158 >gi|323700312|ref|ZP_08112224.1| transcription elongation factor GreA [Desulfovibrio sp. ND132] gi|323460244|gb|EGB16109.1| transcription elongation factor GreA [Desulfovibrio desulfuricans ND132] Length = 164 Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP++ +GF+KI QEL + +RP II+AI+EARA GDLSENA Y AA+E Q + E Sbjct: 1 MDRIPISKQGFEKISQELE-DLKAQRPAIIQAIAEARAEGDLSENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ + + + +V+D+ +SG+R FGATV + + ++ +++ + ++G +AD + G +S Sbjct: 60 RISYINSHMPLFDVLDLDALSGERAIFGATVEVEDIDTEERRTFTLLGPDDADHKKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ +A++GKE GD + V+AP G YEI+ V ++ Sbjct: 120 VLSPMGQAILGKEEGDEVIVDAPRGRIEYEIVSVQFL 156 >gi|257459030|ref|ZP_05624149.1| transcription elongation factor GreA [Campylobacter gracilis RM3268] gi|257443415|gb|EEV18539.1| transcription elongation factor GreA [Campylobacter gracilis RM3268] Length = 163 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 99/152 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI EL+ Q + P I++ I AR +GDL ENAEY AA+E Q R+AE Sbjct: 5 PMTLYGYEKITSELKELQSVKLPHIVQQIDIARGHGDLKENAEYHAAREEQAFLLSRIAE 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +II+R+++ID ST DR+ FG+TV+ ++ + ++ Y IVG EAD+ L++I++P Sbjct: 65 LSDIISRSKIIDPSTYEHDRVKFGSTVTFMDVETEREETYVIVGLSEADISRKLININTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+GK GD + + P G + EIL V + Sbjct: 125 LARQLLGKAEGDEVVLQLPSGTRDVEILSVEY 156 >gi|26991405|ref|NP_746830.1| transcription elongation factor GreA [Pseudomonas putida KT2440] gi|148549790|ref|YP_001269892.1| transcription elongation factor GreA [Pseudomonas putida F1] gi|167035714|ref|YP_001670945.1| transcription elongation factor GreA [Pseudomonas putida GB-1] gi|37999617|sp|Q88DU7|GREA_PSEPK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|24986475|gb|AAN70294.1|AE016670_4 transcription elongation factor GreA [Pseudomonas putida KT2440] gi|148513848|gb|ABQ80708.1| transcription elongation factor GreA [Pseudomonas putida F1] gi|166862202|gb|ABZ00610.1| transcription elongation factor GreA [Pseudomonas putida GB-1] gi|313500631|gb|ADR61997.1| GreA [Pseudomonas putida BIRD-1] Length = 160 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G + Sbjct: 63 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKL 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +PIARA+IGKE GD + V P G YEI++V I Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160 >gi|307720542|ref|YP_003891682.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] gi|306978635|gb|ADN08670.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] Length = 165 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/152 (40%), Positives = 105/152 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+Q E++ ++ +RP ++KAI EA +GDL ENAEY AAKE Q + R+AE Sbjct: 6 PMTLFGYEKLQAEVKDLKEVKRPGVVKAIEEALEHGDLKENAEYHAAKEQQKNIDNRLAE 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I+ ++++D + + +++FG+TV + ++ ++ +Y IVG E++ GL+S +SP Sbjct: 66 LQEILGNSQIVDPTELEHAKVSFGSTVVMTNLDTDEEVSYTIVGGCESNPDIGLISFNSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GKE GD + V PGGEK +EI +V + Sbjct: 126 LAKQLLGKEEGDEVKVRLPGGEKEFEIDEVKY 157 >gi|253827215|ref|ZP_04870100.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] gi|253510621|gb|EES89280.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] Length = 156 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 101/151 (66%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ EL Sbjct: 1 MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP+ Sbjct: 61 TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 121 AKQLLGKVVGDEVTIQLPKGKVDYEILEICY 151 >gi|149921005|ref|ZP_01909465.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1] gi|149818137|gb|EDM77593.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1] Length = 155 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 104/151 (68%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ ELR ++ +RP+ + I A +GDL ENAEY AAKE Q RMA L Sbjct: 1 MTPAGLQKLRDELRNIKEVQRPQNVADIETALGHGDLRENAEYHAAKERQAELAARMAYL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+ A+VID + M+ +++AFGATV+L++ ++ ++ Y +VG+ E +V++G +SI++PI Sbjct: 61 ESHISLAQVIDPAEMNSNKVAFGATVTLMDADTEEEVVYCLVGEDETNVKAGKISITAPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKE GD +V P G + +EI+ V + Sbjct: 121 ARALLGKEAGDDATVRLPKGTRDFEIINVEY 151 >gi|325276153|ref|ZP_08141959.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51] gi|324098713|gb|EGB96753.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51] Length = 153 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++EL + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ ++ Sbjct: 1 MTVQGARALEEELTFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + + VID++T++ ++ FG TV L + ++ YQIVG+ EADV+ G +S S+P Sbjct: 61 EGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKKGKLSNSAP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARA+IGKE GD + V P G YEI++V I Sbjct: 121 IARAIIGKEEGDTVVVKTPNGTVEYEIVEVKHI 153 >gi|118475144|ref|YP_891529.1| transcription elongation factor GreA [Campylobacter fetus subsp. fetus 82-40] gi|118414370|gb|ABK82790.1| transcription elongation factor GreA [Campylobacter fetus subsp. fetus 82-40] Length = 161 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/152 (40%), Positives = 105/152 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E R+AE Sbjct: 4 PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIENRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+SI++P Sbjct: 64 LSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLISINTP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ LIGK GD ++++ P G EI+ V + Sbjct: 124 LAKQLIGKSEGDNVTLSLPNGISEIEIVSVCY 155 >gi|124515276|gb|EAY56786.1| putative transcription elongation factor GreA [Leptospirillum rubarum] gi|206601580|gb|EDZ38063.1| Putative transcription elongation factor GreA [Leptospirillum sp. Group II '5-way CG'] Length = 160 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T G++K+++EL + EERP+ I+ I+EARA+GDLSENAEY AAKE Q Sbjct: 1 MNQVPMTKAGYEKLKEELEKLKHEERPKNIQDIAEARAHGDLSENAEYHAAKERQGFINS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I A V+ + RI FGATV LV +S ++K Y +VG +EAD+++G +S Sbjct: 61 RIKELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ +ALIG G+ +++ P GE Y I ++ + Sbjct: 121 VHSPVGKALIGHSEGETVTIRVPAGEVQYTIAEIFY 156 >gi|87121705|ref|ZP_01077592.1| transcription elongation factor greA (transcript cleavage factor) [Marinomonas sp. MED121] gi|86162956|gb|EAQ64234.1| transcription elongation factor greA (transcript cleavage factor) [Marinomonas sp. MED121] Length = 158 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T +G ++++EL + ERPRII I+ AR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 KVPMTVEGEARLREELGHLKSVERPRIINDIAIAREHGDLKENAEYHAAREEQGFAEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ ++VID+ ++ ++ FG+T++L ++ + Y+IVGD EA+V+ +S Sbjct: 63 KEIEGKLSDSQVIDVKAIAHTGKVIFGSTITLFNVDTEETVTYRIVGDDEAEVKDKKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SPIA+ALIGK GD +++ P GE YEI V Sbjct: 123 ASPIAKALIGKNEGDEVAIKIPSGEVVYEIESV 155 >gi|218512591|ref|ZP_03509431.1| transcription elongation factor GreA [Rhizobium etli 8C-3] Length = 106 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/84 (71%), Positives = 73/84 (86%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NEGR+ EL Sbjct: 1 MTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGRITEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGA 90 E++ RAEVID++ MSGD+I FGA Sbjct: 61 EDLTARAEVIDLTKMSGDKIKFGA 84 >gi|86148136|ref|ZP_01066435.1| transcription elongation factor GreA [Vibrio sp. MED222] gi|218710454|ref|YP_002418075.1| transcription elongation factor GreA [Vibrio splendidus LGP32] gi|85834053|gb|EAQ52212.1| transcription elongation factor GreA [Vibrio sp. MED222] gi|218323473|emb|CAV19650.1| transcription elongation factor GreA [Vibrio splendidus LGP32] Length = 157 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL R + RP I AI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGAQQLRDELD-RLLKLRPIISAAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G + Sbjct: 60 QIRDIEYKLSLAQIIDVTQMDNTGKIIFGTTVTLIDVDTDEEFRYQIVSEDEADIKTGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I Sbjct: 120 SVKSPIARGLIGKMEGDEVLISTPGGDKDFEIDKVEYI 157 >gi|315641239|ref|ZP_07896316.1| transcription elongation factor GreA [Enterococcus italicus DSM 15952] gi|315483006|gb|EFU73525.1| transcription elongation factor GreA [Enterococcus italicus DSM 15952] Length = 157 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKAKLEQELEELKTVKRGEIIERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE +I A++ID + D ++ G TV+ VE GD++ Y IVG EAD SG Sbjct: 61 EGRITTLETMIRFAQIIDNDGVDQDEVSIGKTVTFVELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK+L D ++++ PGG+ +I+ V Sbjct: 121 ISNDSPIAQALIGKKLNDEVTISTPGGDMPVKIISV 156 >gi|227538368|ref|ZP_03968417.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33300] gi|227241883|gb|EEI91898.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33300] Length = 157 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 62/145 (42%), Positives = 98/145 (67%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G DK+++EL + E R I KAI+EAR GDLSENAEY AAKE Q L+E ++A+LE+++ Sbjct: 11 GLDKLKEELHHLKTEGRANIAKAIAEARDKGDLSENAEYDAAKEAQGLHEAKIAKLEDVL 70 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 + A +ID S + ++ + V + K +G + YQ+V + EAD++SG +S+ SPIA+ L Sbjct: 71 SSARLIDESKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGL 130 Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155 +GK GD ++ P G+ +EI+++ Sbjct: 131 LGKSKGDTATIEVPAGKIEFEIMEI 155 >gi|237752951|ref|ZP_04583431.1| transcription elongation factor GreA [Helicobacter winghamensis ATCC BAA-430] gi|229375218|gb|EEO25309.1| transcription elongation factor GreA [Helicobacter winghamensis ATCC BAA-430] Length = 159 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 99/152 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP I I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLITELKNLKEVERPNNIIEIDTAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID +T+ D+++FG+T++L + ++ + Y IVG E++ + GL+S SP Sbjct: 63 LTQLVAEARVIDPATLPHDKVSFGSTITLEDLDTEENYTYTIVGATESNPEKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD ++V P G YEIL++ + Sbjct: 123 LAKQLLGKIVGDEVAVTLPKGRVDYEILEITY 154 >gi|78777731|ref|YP_394046.1| transcription elongation factor GreA [Sulfurimonas denitrificans DSM 1251] gi|78498271|gb|ABB44811.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] Length = 165 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 103/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+Q E++ ++ +RPR++K I EA +GDL ENAEY AAKE Q + + R+AE Sbjct: 6 PMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYHAAKEQQKILDNRLAE 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I ++++D + + +++FG+TV + + S + Y IVG E++ GL+S +SP Sbjct: 66 LAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISEIEYTYTIVGGCESNPDIGLISFNSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+G+E GD + V P G+K +EI++V + Sbjct: 126 LAKQLLGREEGDDVKVQLPNGQKEFEIIEVTY 157 >gi|32472148|ref|NP_865142.1| transcription elongation factor greA [Rhodopirellula baltica SH 1] gi|77416496|sp|Q7UVA0|GREA_RHOBA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|32397520|emb|CAD72826.1| transcription elongation factor greA [Rhodopirellula baltica SH 1] Length = 159 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 103/157 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+ +P+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + Sbjct: 1 MVESVPMTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLM 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ EL + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + Sbjct: 61 AKINELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP + L+GK++G+ V+ P G+ ++IL++ + Sbjct: 121 LVTSPFGQGLVGKKVGETAEVDVPAGKLKFKILKIEF 157 >gi|149909289|ref|ZP_01897945.1| transcription elongation factor GreA [Moritella sp. PE36] gi|149807606|gb|EDM67554.1| transcription elongation factor GreA [Moritella sp. PE36] Length = 159 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + IP+T++G + ++ EL + RP I+ +I+ AR +GDL ENAEY AA+E Q E Sbjct: 1 MSNMIPMTARGAENLRIELEHLKTVRRPEIVSSIAVAREHGDLKENAEYHAAREEQGFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ ++E ++ ++ID++ ++ + R+ FG TV + + ++ Y +VGD EA+++ Sbjct: 61 GRVQDIEWKLSNCQIIDVTKIANNGRVIFGCTVKIYNTETEEEITYNLVGDDEANIKENR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR L+GK + D+ V PGG +EI+ V +I Sbjct: 121 ISINSPIARGLVGKSVDDVAMVKTPGGAIEFEIVSVEYI 159 >gi|313681806|ref|YP_004059544.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM 16994] gi|313154666|gb|ADR33344.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM 16994] Length = 176 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 103/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ +G+D++ +E ++ + E+PR+ + A GD SENAEY AAKE + R+ Sbjct: 6 PMSPRGYDELLREFKYLKDIEKPRVNQEKQRAAELGDRSENAEYHAAKEKLRHIDKRLFY 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++I +A++ID S ++ R FGAT+++ + NS ++ +Y I G E++ ++GL+S+ SP Sbjct: 66 LNSMIEKAQIIDPSVLNHSRAHFGATITIADINSDEEFSYTICGTLESEPENGLISVHSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+A++GKE GD SV+ PGG+K+YE+ + + Sbjct: 126 LAKAMLGKEEGDEFSVHLPGGKKSYEVSAITY 157 >gi|126664880|ref|ZP_01735864.1| Transcription elongation factor [Marinobacter sp. ELB17] gi|126631206|gb|EBA01820.1| Transcription elongation factor [Marinobacter sp. ELB17] Length = 153 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 100/141 (70%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL+ + E+RPR+I +I+ AR +GDL ENAEY AA++ Q+ EGR+ E+ Sbjct: 1 MTTLGEARLRAELQKLKSEDRPRVIASIATAREHGDLKENAEYHAARDQQSFIEGRIQEI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + A+VID++T+ ++ FG TV L+ ++ + YQIVG+ EAD++ G +S+SSP Sbjct: 61 EGKLGGAQVIDVTTIENTGKVIFGTTVHLLNTDTDKQVVYQIVGEDEADIKDGKISVSSP 120 Query: 126 IARALIGKELGDIISVNAPGG 146 IARAL+G+ G+++++ P G Sbjct: 121 IARALVGRRAGEVVAIRVPSG 141 >gi|311069214|ref|YP_003974137.1| transcription elongation factor GreA [Bacillus atrophaeus 1942] gi|310869731|gb|ADP33206.1| transcription elongation factor GreA [Bacillus atrophaeus 1942] Length = 158 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 101/151 (66%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ + + + G TV+ +E GD+++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEDDGGNSNIVGLGKTVTFIELPDGDEESYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++LIGK++GD ++V PGGE +I+++ Sbjct: 127 PIAKSLIGKQVGDQVTVQTPGGEMLVKIVKI 157 >gi|146308634|ref|YP_001189099.1| transcription elongation factor GreA [Pseudomonas mendocina ymp] gi|330504838|ref|YP_004381707.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01] gi|145576835|gb|ABP86367.1| transcription elongation factor GreA [Pseudomonas mendocina ymp] gi|328919124|gb|AEB59955.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01] Length = 158 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++EL + RP + +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGARALEEELAHLTKVRRPALSQAIAEARELGDLKENAEYHAAREEQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++++ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RVRDIEGRLQNAVIIDVTSIEHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARAL+GK GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALVGKSEGDVVGVQTPSGLVEYEIVEVRHI 158 >gi|328474225|gb|EGF45030.1| transcription elongation factor GreA [Vibrio parahaemolyticus 10329] Length = 152 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/145 (44%), Positives = 104/145 (71%), Gaps = 2/145 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQMLRTELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPG 145 S+SSPIAR LIGK GD +++ P Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPA 144 >gi|194336836|ref|YP_002018630.1| transcription elongation factor GreA [Pelodictyon phaeoclathratiforme BU-1] gi|238693368|sp|B4SBF9|GREA_PELPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|194309313|gb|ACF44013.1| transcription elongation factor GreA [Pelodictyon phaeoclathratiforme BU-1] Length = 159 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +TS G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MTDRIYLTSDGYNRLKEELYVLVHQTRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 R+A+LEN + A ++D + D++ +V L ++ D+ Y +V +EAD SG Sbjct: 61 ARIADLENKLASATILDPKQIKTDKVYILTSVKLKNLDTPDEIIEYTLVSSEEADTDSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ RALIGK +G+ + + P GE YEIL++ Sbjct: 121 ISVRSPVGRALIGKAVGEKVQIVVPKGELHYEILEIF 157 >gi|126642719|ref|YP_001085703.1| transcription elongation factor GreA [Acinetobacter baumannii ATCC 17978] gi|239503380|ref|ZP_04662690.1| transcription elongation factor GreA [Acinetobacter baumannii AB900] gi|126388603|gb|ABO13101.1| transcription elongation factor [Acinetobacter baumannii ATCC 17978] Length = 158 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SPIAR L+GK GD + + P G Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146 >gi|169794963|ref|YP_001712756.1| transcription elongation factor GreA [Acinetobacter baumannii AYE] gi|184159251|ref|YP_001847590.1| transcription elongation factor GreA [Acinetobacter baumannii ACICU] gi|213157626|ref|YP_002320424.1| transcription elongation factor GreA [Acinetobacter baumannii AB0057] gi|215482514|ref|YP_002324702.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Acinetobacter baumannii AB307-0294] gi|260556445|ref|ZP_05828663.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|301346071|ref|ZP_07226812.1| transcription elongation factor GreA [Acinetobacter baumannii AB056] gi|301511499|ref|ZP_07236736.1| transcription elongation factor GreA [Acinetobacter baumannii AB058] gi|301595422|ref|ZP_07240430.1| transcription elongation factor GreA [Acinetobacter baumannii AB059] gi|332855122|ref|ZP_08435705.1| transcription elongation factor GreA [Acinetobacter baumannii 6013150] gi|332868230|ref|ZP_08438072.1| transcription elongation factor GreA [Acinetobacter baumannii 6013113] gi|332876148|ref|ZP_08443930.1| transcription elongation factor GreA [Acinetobacter baumannii 6014059] gi|169147890|emb|CAM85753.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter baumannii AYE] gi|183210845|gb|ACC58243.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|213056786|gb|ACJ41688.1| transcription elongation factor GreA [Acinetobacter baumannii AB0057] gi|213989115|gb|ACJ59414.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Acinetobacter baumannii AB307-0294] gi|260409704|gb|EEX03004.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|322509165|gb|ADX04619.1| greA [Acinetobacter baumannii 1656-2] gi|323519193|gb|ADX93574.1| transcription elongation factor GreA [Acinetobacter baumannii TCDC-AB0715] gi|332727625|gb|EGJ59044.1| transcription elongation factor GreA [Acinetobacter baumannii 6013150] gi|332733491|gb|EGJ64661.1| transcription elongation factor GreA [Acinetobacter baumannii 6013113] gi|332735646|gb|EGJ66691.1| transcription elongation factor GreA [Acinetobacter baumannii 6014059] Length = 158 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SPIAR L+GK GD + + P G Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146 >gi|260549215|ref|ZP_05823435.1| transcription elongation factor greA [Acinetobacter sp. RUH2624] gi|260407621|gb|EEX01094.1| transcription elongation factor greA [Acinetobacter sp. RUH2624] Length = 158 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+ Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SPIAR L+GK GD + + P G Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146 >gi|163790351|ref|ZP_02184783.1| transcription elongation factor GreA [Carnobacterium sp. AT7] gi|159874422|gb|EDP68494.1| transcription elongation factor GreA [Carnobacterium sp. AT7] Length = 157 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MIEKVYPMTLDGKKKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD GL Sbjct: 61 EGRVTTIENMLRFSEIIDNSKTAADEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFKGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+AL+GK++G ++ PGG+ +I+++ Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFATPGGDMFVKIVEI 156 >gi|89101202|ref|ZP_01174032.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911] gi|89084088|gb|EAR63259.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911] Length = 158 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 98/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G +K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTQAGKEKLEQELEHLKTVKRKDVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ SGD + G +V+ VE G++++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEEDEASGDTVTLGRSVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK +GD ++V PGG+ + I + Sbjct: 127 PIAKSLMGKRVGDEVTVQTPGGDMSVRITSI 157 >gi|328957198|ref|YP_004374584.1| transcription elongation factor GreA [Carnobacterium sp. 17-4] gi|328673522|gb|AEB29568.1| transcription elongation factor GreA [Carnobacterium sp. 17-4] Length = 157 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MIEKVYPMTLDGKQKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD +GL Sbjct: 61 EGRVTTIENMLRFSEIIDNSNTATDEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFNGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+AL+GK++G ++ PGG+ I+++ Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFGTPGGDMFVRIVEI 156 >gi|199597193|ref|ZP_03210625.1| Transcription elongation factor [Lactobacillus rhamnosus HN001] gi|229552515|ref|ZP_04441240.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|258508708|ref|YP_003171459.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] gi|258539888|ref|YP_003174387.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc 705] gi|199591997|gb|EDZ00072.1| Transcription elongation factor [Lactobacillus rhamnosus HN001] gi|229314067|gb|EEN80040.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|257148635|emb|CAR87608.1| Transcription elongation factor greA [Lactobacillus rhamnosus GG] gi|257151564|emb|CAR90536.1| Transcription elongation factor greA [Lactobacillus rhamnosus Lc 705] gi|259650015|dbj|BAI42177.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] Length = 156 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK P+T++G K++ EL + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ Sbjct: 1 MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++ ++ AE+ID ++ + ++ G V+ E GD++ Y+IVG EAD +G Sbjct: 61 ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTFEE--DGDEETYEIVGAAEADAFNGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ LIG+++GD +++N PGGE T +I +V Sbjct: 119 ISNESPIAQGLIGRKVGDQVTINTPGGEMTVKITKV 154 >gi|295425284|ref|ZP_06817987.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] gi|295065060|gb|EFG55965.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] Length = 158 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 96/142 (67%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G +K++ ELR + +RP +IK I AR+YGDLSEN+EY AAK+ Q+ E R+A Sbjct: 6 FPMTAEGKEKLEAELRDLKLVKRPEVIKRIKVARSYGDLSENSEYDAAKDEQSHVEDRIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++E ++ A+V+D ++ + +A G TV+ E D + Y IVG E+D +G +S S Sbjct: 66 QVEEMLKYAQVVDADSVDPNEVAVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGG 146 PIA+ALIGK+ G+ +S+ PGG Sbjct: 126 PIAQALIGKKKGETVSITTPGG 147 >gi|313681690|ref|YP_004059428.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM 16994] gi|313154550|gb|ADR33228.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM 16994] Length = 165 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 98/157 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T GF ++ EL + + P + I A+ YGDL EN+EY AA+E Q Sbjct: 1 MEQKEPMTKYGFQRLSDELNTLKNIDLPAVNVEIDRAKEYGDLKENSEYHAAREKQAFIG 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I+RA+++D S + R++FG+TV L + S ++ Y IVG E++ GL+ Sbjct: 61 SRIAELGEVISRAQIVDPSELEHARVSFGSTVVLCDLESDEEVTYTIVGGCESNPDRGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+G++ GD ++ PGG K +E+L+V + Sbjct: 121 SFNSPLAKQLLGRQEGDELNAKLPGGTKNFEVLEVKY 157 >gi|330958059|gb|EGH58319.1| transcription elongation factor GreA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 158 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A VID++T+ ++ FG TV + + ++ YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVVIDVTTIEPTGKVIFGTTVEIANVETDERVTYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|325106003|ref|YP_004275657.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145] gi|324974851|gb|ADY53835.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145] Length = 157 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 96/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G + ++QEL++ + E R +I AI+EAR GDLSENAEY AAKE Q L+E ++A+LE Sbjct: 8 TKEGLENLKQELQYLKTEGRAKIANAIAEARDKGDLSENAEYDAAKEAQALHETKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 N + A +ID S + ++ + V + +G YQ+V + EAD++SG +S+ SPIA Sbjct: 68 NTLANARLIDESKIDTTKVLALSIVKIKNVKNGATMTYQLVAENEADLKSGKISVKSPIA 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD + P G+ +EIL + Sbjct: 128 QGLLGKSVGDKAEITVPAGKMEFEILDI 155 >gi|149183148|ref|ZP_01861597.1| transcription elongation factor GreA [Bacillus sp. SG-1] gi|148849131|gb|EDL63332.1| transcription elongation factor GreA [Bacillus sp. SG-1] Length = 158 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 97/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K+++EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR++ Sbjct: 7 FPMTQEGKEKLEKELEQLKSVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I M+ D + G +V+ +E GD++ Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIQEDEMNSDTVTLGKSVTFIELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+G ++G +SV PGGE +I V Sbjct: 127 PIAKSLLGHKVGSEVSVQTPGGEMNVKITAV 157 >gi|52081213|ref|YP_080004.1| transcription elongation factor GreA [Bacillus licheniformis ATCC 14580] gi|52786594|ref|YP_092423.1| transcription elongation factor GreA [Bacillus licheniformis ATCC 14580] gi|319644819|ref|ZP_07999052.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2] gi|81384952|sp|Q65GT4|GREA_BACLD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|52004424|gb|AAU24366.1| transcription elongation factor [Bacillus licheniformis ATCC 14580] gi|52349096|gb|AAU41730.1| GreA [Bacillus licheniformis ATCC 14580] gi|317392628|gb|EFV73422.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2] Length = 158 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 100/151 (66%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K+++EL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTETGKKKLEEELEYLKTVKRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+N+I A++I+ + D ++ G TV+ E G++++Y IVG EAD G +S S Sbjct: 67 TLDNMIRNAKIIEDDGANSDIVSLGKTVTFTELPDGEEESYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK++GD ++V PGGE +I+++ Sbjct: 127 PIAKSLLGKQVGDEVTVQTPGGEMLVKIVKI 157 >gi|238854479|ref|ZP_04644818.1| transcription elongation factor [Lactobacillus jensenii 269-3] gi|260665473|ref|ZP_05866320.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|282934549|ref|ZP_06339801.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|238832906|gb|EEQ25204.1| transcription elongation factor [Lactobacillus jensenii 269-3] gi|260560741|gb|EEX26718.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|281301387|gb|EFA93679.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] Length = 158 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 95/141 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SP Sbjct: 67 VEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 IA+AL+GK GD +S+N PGG Sbjct: 127 IAQALLGKHKGDTVSINTPGG 147 >gi|77456995|ref|YP_346500.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf0-1] gi|77380998|gb|ABA72511.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Pseudomonas fluorescens Pf0-1] Length = 158 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGSKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRLQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD + V PGG+ YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDTVVVKTPGGDIEYEIVEVRHI 158 >gi|70734327|ref|YP_257967.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5] gi|68348626|gb|AAY96232.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5] Length = 158 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGARALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD+++V PGG YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVAVKTPGGVIEYEIVEVRHI 158 >gi|28871634|ref|NP_794253.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato str. DC3000] gi|213966657|ref|ZP_03394808.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato T1] gi|301383167|ref|ZP_07231585.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato Max13] gi|302063398|ref|ZP_07254939.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato K40] gi|302133771|ref|ZP_07259761.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999561|sp|Q87WP5|GREA_PSESM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28854886|gb|AAO57948.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato str. DC3000] gi|213928507|gb|EEB62051.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato T1] gi|331016638|gb|EGH96694.1| transcription elongation factor GreA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 158 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A VID++T++ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVVIDVTTIAHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|294505364|ref|YP_003569426.1| transcription elongation factor [Yersinia pestis Z176003] gi|294355823|gb|ADE66164.1| transcription elongation factor [Yersinia pestis Z176003] Length = 117 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 58/117 (49%), Positives = 86/117 (73%), Gaps = 1/117 (0%) Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGD 101 + ENAEY AA+E Q EGR+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ + Sbjct: 1 MKENAEYHAAREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEE 60 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++NY+IVGD EAD + L+S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++ Sbjct: 61 EQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 117 >gi|194334369|ref|YP_002016229.1| transcription elongation factor GreA [Prosthecochloris aestuarii DSM 271] gi|238693346|sp|B4S9B2|GREA_PROA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|194312187|gb|ACF46582.1| transcription elongation factor GreA [Prosthecochloris aestuarii DSM 271] Length = 160 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T +G+++++ EL + R +++ I+EARA+GDLSENAEY+AA+E Q E Sbjct: 1 MSDRIYLTKQGYNRMRDELNLLKTVVRKEVLEKIAEARAHGDLSENAEYEAAREQQAQME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSG 118 ++ +LEN +TRA ++D + DR+ +V L + D + Y +V +EAD G Sbjct: 61 SKIVDLENKLTRASILDPKQIRTDRVYILTSVKLRNLDETDDEIIEYTLVSSEEADTDQG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ +ALIGK +G+ + ++ P GE YEIL++ Sbjct: 121 KISVRSPVGKALIGKAVGEKVQIHVPKGELHYEILEIF 158 >gi|291515359|emb|CBK64569.1| transcription elongation factor GreA [Alistipes shahii WAL 8301] Length = 158 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 98/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T++G+ KI+ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R+A Sbjct: 6 IYLTAEGYKKIKDELEHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMRIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I + Sbjct: 66 KLEDTMANARVIDESKIDKSKVQILSKVTLLNHNNQKQMTYTIVAEHEANLREGKLAIGT 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+AL+G++ GD + V P G +EIL + Sbjct: 126 PIAKALLGRKKGDRVDVEVPAGTIHFEILDI 156 >gi|294501340|ref|YP_003565040.1| transcription elongation factor GreA [Bacillus megaterium QM B1551] gi|295706687|ref|YP_003599762.1| transcription elongation factor GreA [Bacillus megaterium DSM 319] gi|294351277|gb|ADE71606.1| transcription elongation factor GreA [Bacillus megaterium QM B1551] gi|294804346|gb|ADF41412.1| transcription elongation factor GreA [Bacillus megaterium DSM 319] Length = 158 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 100/151 (66%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ + ++ G +V+ VE GD++ Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK++GD ++V PGG+ + +I+ V Sbjct: 127 PIAKSLMGKQIGDQVTVQTPGGDMSVKIVSV 157 >gi|302185422|ref|ZP_07262095.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae 642] Length = 158 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|119357650|ref|YP_912294.1| transcription elongation factor GreA [Chlorobium phaeobacteroides DSM 266] gi|166200656|sp|A1BHJ3|GREA_CHLPD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119354999|gb|ABL65870.1| transcription elongation factor GreA [Chlorobium phaeobacteroides DSM 266] Length = 159 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL ++R +++ I+EARA+GDLSENAEY AA+E Q+L E Sbjct: 1 MNDRIYLTRDGYNRLKEELYVLVHQKRKEVLEKIAEARAHGDLSENAEYDAAREEQSLTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119 +A+LEN ++ A ++D + D++ +V L + + G+ Y +V +EAD G Sbjct: 61 AHIADLENKLSTATILDPKQVKTDKVYILTSVKLRDLDKEGEIIEYTLVSSEEADTDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ RALIGK +G+ + + P GE YEIL++ Sbjct: 121 ISVRSPVGRALIGKTVGEKVQIMVPKGELHYEILEIF 157 >gi|110597704|ref|ZP_01385988.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM 13031] gi|110340611|gb|EAT59091.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM 13031] Length = 159 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL E R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLVHETRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117 R+A+LEN + A ++D + D++ +V L +N D+K Y +V +EAD Sbjct: 61 ARIADLENKLASATILDPKLIKTDKVYILTSVKL--RNLDDEKEIIEYTLVSSEEADTDL 118 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S+ SP+ RALIGK +G+ + + P G+ YEIL++ Sbjct: 119 GKISVRSPVGRALIGKAVGEKVEIMVPKGKLHYEILEIF 157 >gi|213622659|ref|ZP_03375442.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213855714|ref|ZP_03383954.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 128 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 92/125 (73%), Gaps = 1/125 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++ Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123 Query: 124 SPIAR 128 SPIAR Sbjct: 124 SPIAR 128 >gi|227892809|ref|ZP_04010614.1| transcriptional elongation factor [Lactobacillus ultunensis DSM 16047] gi|227865450|gb|EEJ72871.1| transcriptional elongation factor [Lactobacillus ultunensis DSM 16047] Length = 159 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 99/142 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +IK I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIKRIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PGG+ Sbjct: 127 IAQALLGKKKGETVSITTPGGK 148 >gi|295136274|ref|YP_003586950.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87] gi|294984289|gb|ADF54754.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 8 TAEGLKKLRDELNHLKDVERPRASEAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VID S + ++ + V + +N+G + Y++V EAD+++G +S+ SPI Sbjct: 68 EVVANARVIDESQLDTSKVLIHSHVKIKNQNNGAEVKYKLVAQSEADLKTGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK++G++ + P G +E+L++ W Sbjct: 128 KGLLGKKVGEVADIAVPSGTMKFEVLEI-W 156 >gi|71733247|ref|YP_276321.1| transcription elongation factor GreA [Pseudomonas syringae pv. phaseolicola 1448A] gi|237798553|ref|ZP_04587014.1| transcription elongation factor GreA [Pseudomonas syringae pv. oryzae str. 1_6] gi|257482271|ref|ZP_05636312.1| transcription elongation factor GreA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624592|ref|ZP_06457546.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646951|ref|ZP_06478294.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. 2250] gi|298488446|ref|ZP_07006477.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71553800|gb|AAZ33011.1| transcription elongation factor GreA [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157071|gb|EFH98160.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322538|gb|EFW78631.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. B076] gi|320329993|gb|EFW85980.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. race 4] gi|330868236|gb|EGH02945.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875233|gb|EGH09382.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. race 4] gi|330888668|gb|EGH21329.1| transcription elongation factor GreA [Pseudomonas syringae pv. mori str. 301020] gi|330963965|gb|EGH64225.1| transcription elongation factor GreA [Pseudomonas syringae pv. actinidiae str. M302091] gi|330987045|gb|EGH85148.1| transcription elongation factor GreA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011488|gb|EGH91544.1| transcription elongation factor GreA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331021406|gb|EGI01463.1| transcription elongation factor GreA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|257869644|ref|ZP_05649297.1| prokaryotic transcription elongation factor GreA [Enterococcus gallinarum EG2] gi|257803808|gb|EEV32630.1| prokaryotic transcription elongation factor GreA [Enterococcus gallinarum EG2] Length = 159 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDNDEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIARALIGK++ D ++++ PGG+ +I +V Sbjct: 121 ISNDSPIARALIGKKINDEVTISTPGGDMLVKITEV 156 >gi|167754137|ref|ZP_02426264.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216] gi|167658762|gb|EDS02892.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 98/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R+A Sbjct: 6 IYLTAEGYKKLKDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMRIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++E+ I A +ID S + ++ + V+L+ N+G + Y IV + EA+++ G ++I + Sbjct: 66 KMEDTIANARIIDESKVDKSKVQILSRVTLLNHNTGKEVIYTIVAEHEANLREGKLAIGT 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+AL+G + GD + V P G +EIL + Sbjct: 126 PIAKALLGHKKGDRVDVTVPAGTIHFEILDI 156 >gi|305666121|ref|YP_003862408.1| transcription elongation factor greA [Maribacter sp. HTCC2170] gi|88707555|gb|EAQ99798.1| transcription elongation factor greA [Maribacter sp. HTCC2170] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 98/148 (66%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G ++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E R+++LE Sbjct: 8 TAEGLKNLRDELNQLKDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELRISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + A +ID S + ++ +TV L + +G + Y +V + EAD+++G +S++SPI Sbjct: 68 DTVANARLIDESQLDTSKVLVLSTVKLKNQANGMEMKYTLVAESEADLKTGKISVNSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GKE+GD + P G+ T+EIL++ Sbjct: 128 KGLLGKEVGDTAEITVPNGKITFEILEI 155 >gi|116617590|ref|YP_817961.1| transcription elongation factor GreA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272209|sp|Q03YY4|GREA_LEUMM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116096437|gb|ABJ61588.1| transcription elongation factor GreA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 160 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 93/141 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 8 PMTAEGRDKLQLELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G +S SP Sbjct: 68 LKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAGKISNESP 127 Query: 126 IARALIGKELGDIISVNAPGG 146 +A ALIGK++G+ ++V P G Sbjct: 128 MANALIGKKVGETVAVPLPNG 148 >gi|66047417|ref|YP_237258.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae B728a] gi|63258124|gb|AAY39220.1| Prokaryotic transcription elongation factor GreA [Pseudomonas syringae pv. syringae B728a] gi|330969641|gb|EGH69707.1| transcription elongation factor GreA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|312963093|ref|ZP_07777578.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6] gi|311282604|gb|EFQ61200.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6] Length = 158 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +GF +++E + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGFKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + + VID++T+ ++ FG TV + + + Y IVG+ EAD + G +S+ Sbjct: 63 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALI KE GD+++V PGG YEI++V + Sbjct: 123 GSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158 >gi|227432544|ref|ZP_03914528.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351722|gb|EEJ41964.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 160 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 93/141 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 8 PMTAEGRDKLQFELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G +S SP Sbjct: 68 LKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAGKISNESP 127 Query: 126 IARALIGKELGDIISVNAPGG 146 +A ALIGK++G+ ++V P G Sbjct: 128 MANALIGKKVGETVAVPLPNG 148 >gi|299822858|ref|ZP_07054744.1| transcription elongation factor GreA [Listeria grayi DSM 20601] gi|299816387|gb|EFI83625.1| transcription elongation factor GreA [Listeria grayi DSM 20601] Length = 168 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 94/151 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR +GDLSEN+EY +AK+ Q EGR+ Sbjct: 15 FPMTLEGKAKLETELHELKTVKRKEVVERIKIARGFGDLSENSEYDSAKDEQAFVEGRIT 74 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++ID S D + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 75 TLENMIRNAQIIDALDASNDLVTLGKTVTFTEVPDGDEEAYTIVGSAEADPFEGRISNDS 134 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+AL+G ++G+ + + PGGE T +I+ + Sbjct: 135 PIAKALLGHKIGEEVEIQTPGGEMTVKIIAI 165 >gi|288572943|ref|ZP_06391300.1| transcription elongation factor GreA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568684|gb|EFC90241.1| transcription elongation factor GreA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 164 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 102/155 (65%), Gaps = 4/155 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D I +T +G+D++ +EL+ + EER + + I EAR++GDLSENAEY AAK+ Q E R Sbjct: 9 DGIEMTKEGYDRLYEELKRLRSEERYVVAQRIEEARSFGDLSENAEYAAAKDEQAKLESR 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLV 120 + LE +++A+VID S++ G +A G TV + ++ G+KK +Y IVG +EAD + + Sbjct: 69 IQRLEYQLSKAKVIDSSSLDGSHVALGTTVKI--EDIGNKKTFDYSIVGSEEADPKKSKI 126 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK GD ISV P G + IL++ Sbjct: 127 SSMSPVGQALMGKHPGDEISVKVPNGMRKLRILEI 161 >gi|325280567|ref|YP_004253109.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM 20712] gi|324312376|gb|ADY32929.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM 20712] Length = 158 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 93/149 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G K+Q+EL Q ERP+I KAI EA GD+SENAEY AAK+ Q L E ++A+L Sbjct: 8 VTKEGLKKLQEELERLQNVERPKISKAIGEAIEKGDISENAEYDAAKDAQGLLEAKIAQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I VID S + ++ V++ +G Y +V + EA+ + G +SI +PI Sbjct: 68 KDTIATCRVIDESQIDTSKVQMLNKVTIKNTKTGATMTYTLVSETEANFKEGKLSIHTPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+GK+LGD + V P GE +EI+ + Sbjct: 128 AQALVGKKLGDKVMVKVPAGEMEFEIMDI 156 >gi|255533691|ref|YP_003094063.1| transcription elongation factor GreA [Pedobacter heparinus DSM 2366] gi|255346675|gb|ACU06001.1| transcription elongation factor GreA [Pedobacter heparinus DSM 2366] Length = 157 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 99/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T G DK+++EL++ + R I +AI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MTEVTYYTQDGLDKLKEELQYLKTTGRQLISRAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A++E ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G + Sbjct: 61 AKIAKMEATLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPIA+ L+GK +GD + P G+ +EIL++ Sbjct: 121 SVKSPIAKGLLGKSVGDTTEIEVPAGKMEFEILEI 155 >gi|289676014|ref|ZP_06496904.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae FF5] gi|330937936|gb|EGH41723.1| transcription elongation factor GreA [Pseudomonas syringae pv. pisi str. 1704B] gi|330981080|gb|EGH79183.1| transcription elongation factor GreA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 158 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIVEVRHI 158 >gi|284113334|ref|ZP_06386608.1| transcription elongation factor GreA [Candidatus Poribacteria sp. WGA-A3] gi|283829659|gb|EFC33987.1| transcription elongation factor GreA [Candidatus Poribacteria sp. WGA-A3] Length = 132 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 90/130 (69%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P+ I+ I+EAR +GDL ENAE++AAKE Q + RM+E+E+ + A+VI+ T + + Sbjct: 1 PQNIQDIAEAREHGDLRENAEFKAAKERQQFIDTRMSEIEHKLGDAQVIESGTGPSETVV 60 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FGATV L++ S ++K Y +VG +EAD+++G +S+ SPI RALI +GD++ VN P G Sbjct: 61 FGATVRLLDVESEEQKTYTLVGQEEADLKNGSISVQSPIGRALISHRVGDVVQVNRPAGM 120 Query: 148 KTYEILQVLW 157 YEI ++ + Sbjct: 121 IEYEIQEIFF 130 >gi|212638597|ref|YP_002315117.1| transcription elongation factor GreA [Anoxybacillus flavithermus WK1] gi|212560077|gb|ACJ33132.1| Transcription elongation factor GreA [Anoxybacillus flavithermus WK1] Length = 161 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 102/155 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 6 MEKEYPMTKAGKEKLEQELEYLKTVKRKEVVERIQIARSFGDLSENSEYDAAKDEQAFVE 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LEN+I A++I+ S D ++ G TV+ VE G++++Y IVG EAD G + Sbjct: 66 SRIQMLENMIRNAKIIEEDLESTDIVSLGRTVTFVELPDGEEESYTIVGSAEADPFEGKI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIA++LIG+ +G+ ++V+ PGG+ +I+ V Sbjct: 126 SNDSPIAKSLIGRRVGEEVTVHTPGGDMVVKIIAV 160 >gi|256850855|ref|ZP_05556244.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260661066|ref|ZP_05861980.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|282934474|ref|ZP_06339729.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|297205729|ref|ZP_06923124.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] gi|256615917|gb|EEU21105.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260548003|gb|EEX23979.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|281301421|gb|EFA93710.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|297148855|gb|EFH29153.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] Length = 158 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 95/141 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SP Sbjct: 67 VEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 IA+AL+GK GD +S++ PGG Sbjct: 127 IAQALLGKHKGDTVSISTPGG 147 >gi|149277461|ref|ZP_01883602.1| transcription elongation factor [Pedobacter sp. BAL39] gi|149231694|gb|EDM37072.1| transcription elongation factor [Pedobacter sp. BAL39] Length = 157 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 97/155 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T G DK+++EL + R I KAI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MTEVTYYTQDGLDKLKEELHHMKTTGRQLISKAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G + Sbjct: 61 AKIAKLETTLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPIA+ L+GK +GD + P G+ +EIL++ Sbjct: 121 SVKSPIAQGLLGKSVGDKTEIQVPAGKIEFEILEI 155 >gi|283778813|ref|YP_003369568.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068] gi|283437266|gb|ADB15708.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068] Length = 164 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 102/157 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D IP+T +G+ K++ EL + + P I + I++ARA GDL ENAEY A +E Q L + Sbjct: 1 MDDYIPMTREGYAKLKAELDRMENVDMPDITQKIADARAEGDLKENAEYHAQREAQGLLQ 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ + N +++A +ID STM D+++FG TV + + + +++ + +VG E D +G + Sbjct: 61 AKINLIRNKLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ +AL+GK++GD++ V AP G EIL + + Sbjct: 121 LITSPLGQALVGKKIGDVVDVPAPKGSYQLEILTLKF 157 >gi|315038835|ref|YP_004032403.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|325957274|ref|YP_004292686.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|312276968|gb|ADQ59608.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|325333839|gb|ADZ07747.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|327184004|gb|AEA32451.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1118] Length = 158 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 99/142 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIQRIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PGG+ Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148 >gi|330895316|gb|EGH27654.1| transcription elongation factor GreA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 158 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V P G YEI++V I Sbjct: 123 GSPIARALIAKEEGDVVFVKTPSGVIEYEIVEVRHI 158 >gi|268319887|ref|YP_003293543.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] gi|262398262|emb|CAX67276.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] Length = 160 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 106/153 (69%), Gaps = 3/153 (1%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +S SPIA+AL+GK+ G+ ++VN PGG T+++ Sbjct: 121 ISNDSPIAQALLGKKKGEKVTVNTPGG--TFDV 151 >gi|300871555|ref|YP_003786428.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000] gi|300689256|gb|ADK31927.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000] Length = 154 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 100/152 (65%), Gaps = 5/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 P+T +G+DK++++L + E P II +EAR GDL ENAEY AA+E Q L + ++ Sbjct: 4 PITKEGYDKVKEKLSELKAEFDTLPAII---AEAREKGDLKENAEYHAAREKQGLLQAQI 60 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++LE+ + E++D S M+ D + FG V + +KNS Y+IVG+ EAD+ ++I Sbjct: 61 SKLESDLAVCEIVDPSKMNKDIVTFGKRVKVKDKNSNAVSEYRIVGELEADMSKNEITIV 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +PIAR L+ K++GD++++ P G+K EIL++ Sbjct: 121 TPIARGLLTKKVGDVVTIKVPAGDKVLEILEI 152 >gi|302343822|ref|YP_003808351.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075] gi|301640435|gb|ADK85757.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075] Length = 155 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 98/149 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++Q+EL ++ E P +KAI EARA+GDLSENAEY AAKE + ++AEL Sbjct: 6 LTREGQIRLQRELDHLRKVELPASVKAIEEARAHGDLSENAEYHAAKERNAIVAAKIAEL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + +EVID + R+ FG V++ + + ++ +YQIVG E+D G +S++SP+ Sbjct: 66 KSELALSEVIDPLPQADGRVVFGCKVTIYDSETDEEASYQIVGAAESDASQGRMSMTSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GKE GD + V PGG + EI+ V Sbjct: 126 GQALLGKEEGDEVKVQTPGGLRVIEIVSV 154 >gi|260103131|ref|ZP_05753368.1| transcription elongation factor GreA [Lactobacillus helveticus DSM 20075] gi|260083041|gb|EEW67161.1| transcription elongation factor GreA [Lactobacillus helveticus DSM 20075] gi|328464780|gb|EGF36095.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC 5463] Length = 158 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 99/142 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 IEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PGG+ Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148 >gi|21674267|ref|NP_662332.1| transcription elongation factor GreA [Chlorobium tepidum TLS] gi|25452984|sp|Q8KCH5|GREA_CHLTE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21647437|gb|AAM72674.1| transcription elongation factor GreA [Chlorobium tepidum TLS] Length = 159 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL E R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLMTETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 ++ E+EN + A ++D + DR+ +V L ++ D+ Y +V +EAD G Sbjct: 61 AKIGEIENKLASATILDPKQIKTDRVYILTSVKLRNLDAEDEIIEYTLVSSEEADSDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ R+LIGK +GD ++++ P GE YEIL + Sbjct: 121 ISVRSPVGRSLIGKSVGDKVTISVPKGELHYEILDIF 157 >gi|150003999|ref|YP_001298743.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC 8482] gi|254880754|ref|ZP_05253464.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA] gi|294778035|ref|ZP_06743469.1| putative transcription elongation factor GreA [Bacteroides vulgatus PC510] gi|319639765|ref|ZP_07994495.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A] gi|149932423|gb|ABR39121.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC 8482] gi|254833547|gb|EET13856.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA] gi|294448093|gb|EFG16659.1| putative transcription elongation factor GreA [Bacteroides vulgatus PC510] gi|317388582|gb|EFV69431.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A] Length = 154 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 102/151 (67%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++L Sbjct: 4 MSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KSTIGDAKIIDTSKMNADTVQILTKVELKNAKTGMKMVYTIVAESEANLKLGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + E++ + + Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEVVNISF 154 >gi|116492493|ref|YP_804228.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] gi|116102643|gb|ABJ67786.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] Length = 160 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 100/150 (66%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G K+++EL + + RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+ Sbjct: 8 PMTLDGKAKLEEELETLKTKTRPQVIERIKIARSFGDLSENSEYESAKDEQSMVESRINT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A++ID ++GD ++ G V E + + Y IVG EAD +G +S SP Sbjct: 68 VEHMLHYAQIIDNDDIAGDEVSLGRVVEFKELPDEEPEEYTIVGAAEADPMTGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+AL+GK++GD +S+ PGG+ +IL V Sbjct: 128 IAKALLGKKVGDEVSIATPGGDMKVKILTV 157 >gi|257867772|ref|ZP_05647425.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC30] gi|257874099|ref|ZP_05653752.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC10] gi|257876660|ref|ZP_05656313.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC20] gi|325571033|ref|ZP_08146605.1| transcription elongation factor GreA [Enterococcus casseliflavus ATCC 12755] gi|257801855|gb|EEV30758.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC30] gi|257808263|gb|EEV37085.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC10] gi|257810826|gb|EEV39646.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC20] gi|325156118|gb|EGC68304.1| transcription elongation factor GreA [Enterococcus casseliflavus ATCC 12755] Length = 159 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV VE GD++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDSDEVSIGKTVIFVELPDGDEEEYMIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIARALIGK++ D ++++ PGG+ I +V Sbjct: 121 ISNDSPIARALIGKKVNDEVTISTPGGDMQVRITEV 156 >gi|42519498|ref|NP_965428.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|116630017|ref|YP_815189.1| transcription elongation factor [Lactobacillus gasseri ATCC 33323] gi|227889550|ref|ZP_04007355.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|238853796|ref|ZP_04644162.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282851368|ref|ZP_06260733.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1] gi|300361220|ref|ZP_07057397.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|311110352|ref|ZP_07711749.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22] gi|41583786|gb|AAS09394.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|116095599|gb|ABJ60751.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|227850028|gb|EEJ60114.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|238833605|gb|EEQ25876.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282557336|gb|EFB62933.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1] gi|300353839|gb|EFJ69710.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|311065506|gb|EFQ45846.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22] gi|329667737|gb|AEB93685.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC 6026] Length = 160 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 106/153 (69%), Gaps = 3/153 (1%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +S SPIA+AL+GK+ G+ +++N PGG T+++ Sbjct: 121 ISNDSPIAQALLGKKKGEKVTINTPGG--TFDV 151 >gi|320103860|ref|YP_004179451.1| transcription elongation factor GreA [Isosphaera pallida ATCC 43644] gi|319751142|gb|ADV62902.1| transcription elongation factor GreA [Isosphaera pallida ATCC 43644] Length = 157 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 101/154 (65%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P++ +G+DK++ +L + EE P+I + I+ AR +GDLSENAE+ AA E Q + + Sbjct: 1 MDKVPMSKEGYDKLRAQLDHWKNEEMPKIAEQIALARGFGDLSENAEFDAAVEAQGMLQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE+ ++RA ++D + ++ DR+ FG V +++ + D++ + VG E D + + Sbjct: 61 KINDLESKLSRAIIVDKNAVTTDRVVFGTRVKVLDLDCDDEEEFTFVGPGEEDYDNNKIL 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SSPI + L+GK + D + VN P G + IL++ Sbjct: 121 LSSPIGQGLLGKSVNDEVCVNVPKGVLRFRILEI 154 >gi|296111138|ref|YP_003621519.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU 11154] gi|295832669|gb|ADG40550.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU 11154] Length = 160 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTAEGRDKLQTELEDLITRQRPEITTRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D SG +S S Sbjct: 67 TLKKMIENAEIIDPNATAADEVSLGKTVTFKELPDEEAETYAIVGSTESDPLSGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +A ALIGK++GD ++V P G+ T EIL+V Sbjct: 127 AMAVALIGKKVGDKVAVPLPSGDNITVEILKV 158 >gi|323490029|ref|ZP_08095250.1| transcription elongation factor GreA [Planococcus donghaensis MPA1U2] gi|323396325|gb|EGA89150.1| transcription elongation factor GreA [Planococcus donghaensis MPA1U2] Length = 158 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 100/153 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T+ G K++ EL + + +R +++ I AR +GDLSENAEY +AKE Q EGR+ Sbjct: 6 QFPMTAAGKQKLEDELDFLKTIKRKEVVERIKIARDFGDLSENAEYDSAKEDQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 + LE++I A +I+ + ++ D + G TV+ +E GD+++Y IVG EAD G +S Sbjct: 66 STLESMIRNAVIINENELNKDIVRLGTTVTFIEVPDGDQESYTIVGSAEADPLEGRISND 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+++IG+ +G+ + V PGGE +IL ++ Sbjct: 126 SPIAKSMIGRTIGEHVKVLTPGGEMEIKILSIM 158 >gi|193213188|ref|YP_001999141.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB 8327] gi|238692652|sp|B3QPT8|GREA_CHLP8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193086665|gb|ACF11941.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB 8327] Length = 159 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 100/159 (62%), Gaps = 5/159 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLSTQTRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117 ++ +LEN + A ++D + DR+ +V L +N D+ Y +V +EAD Sbjct: 61 AKIGDLENKLASATILDPKQIKTDRVYILTSVKL--RNLDDEDEIIEYTLVSSEEADSDL 118 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S+ SP+ RALIGK +GD ++++ P GE YEIL + Sbjct: 119 GKISVRSPVGRALIGKSVGDKVTISVPKGELHYEILDIF 157 >gi|86135044|ref|ZP_01053626.1| transcription elongation factor GreA [Polaribacter sp. MED152] gi|85821907|gb|EAQ43054.1| transcription elongation factor GreA [Polaribacter sp. MED152] Length = 157 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 101/155 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + +G K+++EL +Q ERPR+ + I++AR GDLSENAEY AAKE Q+ E Sbjct: 1 MSDISYYSPEGLKKLKEELHQLEQVERPRVTQEIADARDKGDLSENAEYHAAKEEQSHLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+L+N++ A ++D S + +I + V + +G + +Y++V D E DV++G + Sbjct: 61 TKIAKLKNVVANARILDESQLDTSKILIHSNVKIKNTANGMEFSYRLVADSETDVRNGKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S++SPI + L+GKE+G+I + P G +EI+++ Sbjct: 121 SVNSPIGKGLLGKEVGEIAEIQVPSGIMKFEIVEI 155 >gi|212692849|ref|ZP_03300977.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855] gi|237709534|ref|ZP_04540015.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA] gi|237724871|ref|ZP_04555352.1| transcription elongation factor GreA [Bacteroides sp. D4] gi|265754743|ref|ZP_06089795.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA] gi|212664638|gb|EEB25210.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855] gi|229436609|gb|EEO46686.1| transcription elongation factor GreA [Bacteroides dorei 5_1_36/D4] gi|229456590|gb|EEO62311.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA] gi|263234857|gb|EEZ20425.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA] Length = 154 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 102/151 (67%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++L Sbjct: 4 MSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KSTIGDAKIIDTSKMNADTVQILTKVELKNVKTGMKMVYTIVAESEANLKLGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + E++ + + Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEVVNISF 154 >gi|330877243|gb|EGH11392.1| transcription elongation factor GreA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 158 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A VID++T+ ++ FG TV + + ++ Y+IVG+ EA+++ G +S+ Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDERVTYKIVGEDEANIKDGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIARALI KE GD++ V P G YEI++V Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEV 155 >gi|313471842|ref|ZP_07812334.1| transcription elongation factor GreA [Lactobacillus jensenii 1153] gi|313449010|gb|EEQ68245.2| transcription elongation factor GreA [Lactobacillus jensenii 1153] Length = 151 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 94/140 (67%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A++ Sbjct: 1 MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SPI Sbjct: 61 EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI 120 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GK GD +S+N PGG Sbjct: 121 AQALLGKHKGDTVSINTPGG 140 >gi|309389965|gb|ADO77845.1| transcription elongation factor GreA [Halanaerobium praevalens DSM 2228] Length = 160 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 100/155 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T +GF+K++QEL + + E+R + K I AR +GD+SEN+EY AK Q E Sbjct: 1 MADQVMLTEEGFEKLEQELEYLETEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E++N+++ A V+ ++ ++ G TV L + ++ ++ +Y +VG EAD + + Sbjct: 61 GRIQEIKNMLSDAHVVKDDEVTDKKVNLGTTVMLNDLDNDEQISYTLVGSAEADPLNYKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A++G +GD + V+ PGGE YEI+ + Sbjct: 121 SNESPIGKAILGHAIGDQVKVDTPGGEVNYEIISI 155 >gi|293381813|ref|ZP_06627786.1| transcription elongation factor GreA [Lactobacillus crispatus 214-1] gi|290921631|gb|EFD98660.1| transcription elongation factor GreA [Lactobacillus crispatus 214-1] Length = 158 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 97/141 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 IA+AL+GK+ G+ +S+ PGG Sbjct: 127 IAQALLGKKKGETVSITTPGG 147 >gi|260061565|ref|YP_003194645.1| transcription elongation factor GreA [Robiginitalea biformata HTCC2501] gi|88785697|gb|EAR16866.1| putative transcription elongation factor [Robiginitalea biformata HTCC2501] Length = 157 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 8 TPEGMKKLKDELNHLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A +ID S + ++ +TV L + +G + +Y +V + EAD+++G +S++SPI Sbjct: 68 EVVANARLIDESQLDTSKVLVLSTVKLRNQQNGQELSYTLVAESEADLKAGKISVTSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++GD + P G +++L++ Sbjct: 128 KGLLGKKVGDTAEIQVPNGTLKFDVLEI 155 >gi|239827818|ref|YP_002950442.1| transcription elongation factor GreA [Geobacillus sp. WCH70] gi|239808111|gb|ACS25176.1| transcription elongation factor GreA [Geobacillus sp. WCH70] Length = 159 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 99/152 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+ Sbjct: 7 QFPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEARI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S Sbjct: 67 QTLENMIRNAVIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISND 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA++L+G+ +G+ ++V PGGE +I+ V Sbjct: 127 SPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAV 158 >gi|89889854|ref|ZP_01201365.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium BBFL7] gi|89518127|gb|EAS20783.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium BBFL7] Length = 158 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/148 (40%), Positives = 95/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +GF K++ EL+ + ERPR +AI+EAR GDLSENAEY AAKE Q + E R+++LE Sbjct: 8 TEEGFKKLKDELKQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ A +ID S + ++ + V + N+ NY++V E+D+ GL+S+ SPI Sbjct: 68 AVVSNARIIDESDLDLSKVLIHSNVKIKNLNNKMVMNYKLVAQSESDITKGLISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GKE+G++ P G EI+++ Sbjct: 128 KALLGKEVGEVAEAVVPVGTIKLEIMEI 155 >gi|283851364|ref|ZP_06368646.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B] gi|283573314|gb|EFC21292.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B] Length = 162 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T +GF + + R ++ERP II AI EAR GDL ENA Y+AA+E Q + E Sbjct: 1 MESIPITVEGFRR-LERELERLKKERPAIILAIKEAREEGDLRENAGYEAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID+ST+ GD++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINFIESRMPRFNVIDLSTLGGDQVIFGATVEIEDVDTGDIKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ AL+GK GD I V+AP G+ YEI+ + + Sbjct: 120 ILSPVGLALLGKYEGDEIVVDAPRGKINYEIVSITF 155 >gi|78187325|ref|YP_375368.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273] gi|78167227|gb|ABB24325.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273] Length = 176 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T G++++++EL+ QE R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 18 MSERVYLTRDGYNRLKEELQVLVQETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQTE 77 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117 R+A+LEN + A ++D + D++ +V L +N K Y +V +EAD Sbjct: 78 SRIADLENKLASATILDPKQIKTDKVYILTSVEL--RNLDAPKEIIEYTLVSSEEADSDL 135 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S+ SP+ RALIGK GD +++ P GE YEIL++ Sbjct: 136 GKISVRSPVGRALIGKTAGDKVTIVVPKGELHYEILKIF 174 >gi|327539251|gb|EGF25874.1| transcription elongation factor GreA [Rhodopirellula baltica WH47] Length = 153 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 98/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + ++ EL Sbjct: 1 MTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + ++SP Sbjct: 61 RDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPF 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK++G+ V+ P G+ ++IL++ + Sbjct: 121 GQGLVGKKVGETAEVDVPAGKLKFKILKIEF 151 >gi|227877749|ref|ZP_03995783.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01] gi|256843602|ref|ZP_05549090.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN] gi|256850078|ref|ZP_05555508.1| transcriptional elongation factor [Lactobacillus crispatus MV-1A-US] gi|262047366|ref|ZP_06020323.1| transcriptional elongation factor [Lactobacillus crispatus MV-3A-US] gi|295693346|ref|YP_003601956.1| transcription elongation factor [Lactobacillus crispatus ST1] gi|227862652|gb|EEJ70137.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01] gi|256615022|gb|EEU20223.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN] gi|256713050|gb|EEU28041.1| transcriptional elongation factor [Lactobacillus crispatus MV-1A-US] gi|260572340|gb|EEX28903.1| transcriptional elongation factor [Lactobacillus crispatus MV-3A-US] gi|295031452|emb|CBL50931.1| Transcription elongation factor [Lactobacillus crispatus ST1] Length = 158 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 97/141 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 IA+AL+GK+ G+ +S+ PGG Sbjct: 127 IAQALLGKKKGETVSITTPGG 147 >gi|116495149|ref|YP_806883.1| transcription elongation factor [Lactobacillus casei ATCC 334] gi|191638657|ref|YP_001987823.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus casei BL23] gi|227534836|ref|ZP_03964885.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632029|ref|ZP_04675060.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066713|ref|YP_003788736.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|116105299|gb|ABJ70441.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] gi|190712959|emb|CAQ66965.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus casei BL23] gi|227187592|gb|EEI67659.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526494|gb|EEQ65495.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439120|gb|ADK18886.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327382699|gb|AEA54175.1| Elongation factor GreA [Lactobacillus casei LC2W] gi|327385886|gb|AEA57360.1| Elongation factor GreA [Lactobacillus casei BD-II] Length = 156 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 103/156 (66%), Gaps = 3/156 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK P+T++G K++ EL + ++RP +I I AR +GDLSEN+EY+AAK+ Q+ Sbjct: 1 MADKSYPMTAEGKKKLEDELEELKTKKRPEVIDRIKVARGFGDLSENSEYEAAKDEQSTL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++ ++ AE+ID ++ + ++ G V+ E GD++ Y+IVG EAD +G Sbjct: 61 ENRIVTIQTMLRYAEIIDSKAVAKNEVSLGKKVTFEE--DGDEETYEIVGAAEADAFNGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ LIG+++GD ++++ PGGE +I +V Sbjct: 119 ISNESPIAQGLIGRKVGDKVTISTPGGEMKIKITKV 154 >gi|16079786|ref|NP_390610.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. 168] gi|221310668|ref|ZP_03592515.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. 168] gi|221314991|ref|ZP_03596796.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319912|ref|ZP_03601206.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324193|ref|ZP_03605487.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312257|ref|YP_004204544.1| transcription elongation factor GreA [Bacillus subtilis BSn5] gi|3183527|sp|P80240|GREA_BACSU RecName: Full=Transcription elongation factor greA; AltName: Full=General stress protein 20M; Short=GSP20M; AltName: Full=Transcript cleavage factor greA gi|2635178|emb|CAB14674.1| transcription elongation factor [Bacillus subtilis subsp. subtilis str. 168] gi|291485137|dbj|BAI86212.1| transcription elongation factor GreA [Bacillus subtilis subsp. natto BEST195] gi|320018531|gb|ADV93517.1| transcription elongation factor GreA [Bacillus subtilis BSn5] Length = 157 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK++ + ++V PGGE +I+++ Sbjct: 126 PIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156 >gi|189347164|ref|YP_001943693.1| transcription elongation factor GreA [Chlorobium limicola DSM 245] gi|238692161|sp|B3EE12|GREA_CHLL2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189341311|gb|ACD90714.1| transcription elongation factor GreA [Chlorobium limicola DSM 245] Length = 159 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLIHQTRKEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119 R+A+LEN ++ A ++D + D++ +V L D+ Y +V +EAD G Sbjct: 61 ARIADLENKLSTATILDPKLIKTDKVYILTSVKLKNLQVEDEVIEYTLVSSEEADTDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ R+LIGK +GD + + P GE +EIL + Sbjct: 121 ISVRSPVGRSLIGKTVGDKVHITVPKGELHFEILDIF 157 >gi|313206078|ref|YP_004045255.1| transcription elongation factor grea [Riemerella anatipestifer DSM 15868] gi|312445394|gb|ADQ81749.1| transcription elongation factor GreA [Riemerella anatipestifer DSM 15868] gi|315023743|gb|EFT36746.1| Transcription elongation factor GreA [Riemerella anatipestifer RA-YM] gi|325336482|gb|ADZ12756.1| Transcription elongation factor [Riemerella anatipestifer RA-GD] Length = 155 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q L E ++++L Sbjct: 4 VTKEGLEKMKAELEQLESVERPKITQQIAEARDKGDLSENAEYDAAKEAQGLLEMKISKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++I ++VID S + +++ TV L K + ++ + +V D E+D++SG +S+++PI Sbjct: 64 KDLIATSKVIDESQLDISKVSILTTVKLFNKATKKEQVFTLVPDNESDLKSGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 A+ L+GK++G+ + P G + T+E+L + Sbjct: 124 AKGLLGKKVGETAEITLPNGNQLTFEVLDI 153 >gi|312144281|ref|YP_003995727.1| transcription elongation factor GreA [Halanaerobium sp. 'sapolanicus'] gi|311904932|gb|ADQ15373.1| transcription elongation factor GreA [Halanaerobium sp. 'sapolanicus'] Length = 160 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 95/155 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +GFDK++ EL + Q E+R + K I AR +GD+SEN+EY AK Q E Sbjct: 1 MAEQLMLTEEGFDKLENELDYLQNEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E++N++ A V+ ++ ++ G TV L ++ K +Y +VG EAD + + Sbjct: 61 GRIKEIKNMLNNAHVVKDEDVTDTKVNLGTTVMLYNLDNDTKISYTLVGSAEADPLNHKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A++G +GD ++V P GE YEIL + Sbjct: 121 SNESPIGKAILGHVIGDQVTVETPSGEAHYEILSI 155 >gi|256847484|ref|ZP_05552930.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] gi|256716148|gb|EEU31123.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] Length = 158 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 101/151 (66%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G +K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q EGR++ Sbjct: 7 FPMTAEGKEKLEQELEDLRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN++ A +ID ++ D ++ G +V+ E + + Y IVG+ E+D SG +S S Sbjct: 67 QIENMLQYAVIIDNDDVAADEVSMGRSVTFKELPDEEPETYTIVGESESDPLSGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++G+ + ++ P G EI++V Sbjct: 127 PMAKGLLGHKVGEKVDIDIPSGIMHVEIIEV 157 >gi|225010165|ref|ZP_03700637.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-3C] gi|225005644|gb|EEG43594.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-3C] Length = 158 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++A++E Sbjct: 8 TAEGLKKLKDELNQLRDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELKIAKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I+ A +ID S + ++ +TV L +G + +Y +V + EAD++SG +S++SPI Sbjct: 68 GILAGARLIDESQLDNSKVLVLSTVKLKNTQNGMQMSYTLVAESEADLKSGKISVNSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++GDI + P G +EI+ + Sbjct: 128 QGLLGKKVGDIAEIKVPNGTMGFEIVAI 155 >gi|313157566|gb|EFR56982.1| transcription elongation factor GreA [Alistipes sp. HGB5] Length = 169 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 97/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q + E R+A Sbjct: 17 IYLTAEGYKKLRDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGMLEMRIA 76 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I + Sbjct: 77 KLEDSLANARVIDESKIDKSKVQILSKVTLLNHNTKKEMVYTIVAEHEANLREGKLAIGT 136 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+AL+G + GD + V P G +EIL + Sbjct: 137 PIAKALLGHKKGDRVDVEVPAGTIHFEILDI 167 >gi|227518219|ref|ZP_03948268.1| transcription elongation factor GreA [Enterococcus faecalis TX0104] gi|227554362|ref|ZP_03984409.1| transcription elongation factor GreA [Enterococcus faecalis HH22] gi|229547587|ref|ZP_04436312.1| transcription elongation factor GreA [Enterococcus faecalis TX1322] gi|229548206|ref|ZP_04436931.1| transcription elongation factor GreA [Enterococcus faecalis ATCC 29200] gi|293382163|ref|ZP_06628106.1| transcription elongation factor GreA [Enterococcus faecalis R712] gi|293388526|ref|ZP_06633030.1| transcription elongation factor GreA [Enterococcus faecalis S613] gi|307268839|ref|ZP_07550206.1| transcription elongation factor GreA [Enterococcus faecalis TX4248] gi|307272673|ref|ZP_07553921.1| transcription elongation factor GreA [Enterococcus faecalis TX0855] gi|307275101|ref|ZP_07556255.1| transcription elongation factor GreA [Enterococcus faecalis TX2134] gi|307278545|ref|ZP_07559617.1| transcription elongation factor GreA [Enterococcus faecalis TX0860] gi|307287391|ref|ZP_07567450.1| transcription elongation factor GreA [Enterococcus faecalis TX0109] gi|307290828|ref|ZP_07570722.1| transcription elongation factor GreA [Enterococcus faecalis TX0411] gi|312900390|ref|ZP_07759700.1| transcription elongation factor GreA [Enterococcus faecalis TX0470] gi|312902920|ref|ZP_07762117.1| transcription elongation factor GreA [Enterococcus faecalis TX0635] gi|312905741|ref|ZP_07764763.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 512] gi|312909063|ref|ZP_07767923.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 516] gi|312952203|ref|ZP_07771081.1| transcription elongation factor GreA [Enterococcus faecalis TX0102] gi|227074315|gb|EEI12278.1| transcription elongation factor GreA [Enterococcus faecalis TX0104] gi|227176508|gb|EEI57480.1| transcription elongation factor GreA [Enterococcus faecalis HH22] gi|229306685|gb|EEN72681.1| transcription elongation factor GreA [Enterococcus faecalis ATCC 29200] gi|229307277|gb|EEN73264.1| transcription elongation factor GreA [Enterococcus faecalis TX1322] gi|291080446|gb|EFE17810.1| transcription elongation factor GreA [Enterococcus faecalis R712] gi|291082130|gb|EFE19093.1| transcription elongation factor GreA [Enterococcus faecalis S613] gi|306498137|gb|EFM67660.1| transcription elongation factor GreA [Enterococcus faecalis TX0411] gi|306501564|gb|EFM70860.1| transcription elongation factor GreA [Enterococcus faecalis TX0109] gi|306504782|gb|EFM73980.1| transcription elongation factor GreA [Enterococcus faecalis TX0860] gi|306508219|gb|EFM77335.1| transcription elongation factor GreA [Enterococcus faecalis TX2134] gi|306510668|gb|EFM79690.1| transcription elongation factor GreA [Enterococcus faecalis TX0855] gi|306514843|gb|EFM83391.1| transcription elongation factor GreA [Enterococcus faecalis TX4248] gi|310628220|gb|EFQ11503.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 512] gi|310629859|gb|EFQ13142.1| transcription elongation factor GreA [Enterococcus faecalis TX0102] gi|310633692|gb|EFQ16975.1| transcription elongation factor GreA [Enterococcus faecalis TX0635] gi|311290625|gb|EFQ69181.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 516] gi|311292480|gb|EFQ71036.1| transcription elongation factor GreA [Enterococcus faecalis TX0470] gi|315028152|gb|EFT40084.1| transcription elongation factor GreA [Enterococcus faecalis TX2137] gi|315030868|gb|EFT42800.1| transcription elongation factor GreA [Enterococcus faecalis TX4000] gi|315032284|gb|EFT44216.1| transcription elongation factor GreA [Enterococcus faecalis TX0017] gi|315036236|gb|EFT48168.1| transcription elongation factor GreA [Enterococcus faecalis TX0027] gi|315145421|gb|EFT89437.1| transcription elongation factor GreA [Enterococcus faecalis TX2141] gi|315148786|gb|EFT92802.1| transcription elongation factor GreA [Enterococcus faecalis TX4244] gi|315151674|gb|EFT95690.1| transcription elongation factor GreA [Enterococcus faecalis TX0012] gi|315154526|gb|EFT98542.1| transcription elongation factor GreA [Enterococcus faecalis TX0031] gi|315156395|gb|EFU00412.1| transcription elongation factor GreA [Enterococcus faecalis TX0043] gi|315160114|gb|EFU04131.1| transcription elongation factor GreA [Enterococcus faecalis TX0312] gi|315163267|gb|EFU07284.1| transcription elongation factor GreA [Enterococcus faecalis TX0645] gi|315165929|gb|EFU09946.1| transcription elongation factor GreA [Enterococcus faecalis TX1302] gi|315169337|gb|EFU13354.1| transcription elongation factor GreA [Enterococcus faecalis TX1341] gi|315171809|gb|EFU15826.1| transcription elongation factor GreA [Enterococcus faecalis TX1342] gi|315174754|gb|EFU18771.1| transcription elongation factor GreA [Enterococcus faecalis TX1346] gi|315576267|gb|EFU88458.1| transcription elongation factor GreA [Enterococcus faecalis TX0309B] gi|315578907|gb|EFU91098.1| transcription elongation factor GreA [Enterococcus faecalis TX0630] gi|315582758|gb|EFU94949.1| transcription elongation factor GreA [Enterococcus faecalis TX0309A] gi|327536067|gb|AEA94901.1| transcription elongation factor GreA [Enterococcus faecalis OG1RF] gi|329573310|gb|EGG54923.1| transcription elongation factor GreA [Enterococcus faecalis TX1467] Length = 188 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 30 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 89 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG Sbjct: 90 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 149 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK+LGD + + PGG+ T +I +V Sbjct: 150 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKV 185 >gi|300173857|ref|YP_003773023.1| transcription elongation factor greA [Leuconostoc gasicomitatum LMG 18811] gi|299888236|emb|CBL92204.1| Transcription elongation factor greA [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G +K+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTAEGRNKLQAELEDLITNQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ +I AE+ID + + D ++ G TV+ E + D + Y IVG E+D +G +S S Sbjct: 67 TLKKMIENAEIIDPNATAADEVSLGKTVTFKELPNEDAETYAIVGSTESDPVAGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +A AL+GK++GD ++V P G+ + EIL+V Sbjct: 127 AMAVALLGKKVGDKVNVPLPSGDNISVEILKV 158 >gi|150009350|ref|YP_001304093.1| transcription elongation factor GreA [Parabacteroides distasonis ATCC 8503] gi|255016202|ref|ZP_05288328.1| transcription elongation factor GreA [Bacteroides sp. 2_1_7] gi|256842355|ref|ZP_05547858.1| transcription elongation factor GreB [Parabacteroides sp. D13] gi|262384735|ref|ZP_06077868.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B] gi|298377865|ref|ZP_06987815.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19] gi|301312256|ref|ZP_07218173.1| transcription elongation factor GreA [Bacteroides sp. 20_3] gi|149937774|gb|ABR44471.1| transcription elongation factor GreA [Parabacteroides distasonis ATCC 8503] gi|256735962|gb|EEU49293.1| transcription elongation factor GreB [Parabacteroides sp. D13] gi|262293716|gb|EEY81651.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B] gi|298265311|gb|EFI06974.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19] gi|300829678|gb|EFK60331.1| transcription elongation factor GreA [Bacteroides sp. 20_3] Length = 156 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+L Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I+ A +ID S + D + V + + Y +V D EA+++ G +S+S+PI Sbjct: 66 KGLISNARLIDESRVKTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKISVSTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD++ + P G T+EI+ + Sbjct: 126 AQGLMGKKVGDVVEIRVPSGLMTFEIMDI 154 >gi|323466134|gb|ADX69821.1| Transcription elongation factor [Lactobacillus helveticus H10] Length = 158 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 98/142 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PG + Sbjct: 127 IAQALLGKKKGETVSITTPGSQ 148 >gi|296333176|ref|ZP_06875629.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675318|ref|YP_003866990.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii str. W23] gi|296149374|gb|EFG90270.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413562|gb|ADM38681.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK++ + ++V PGGE +I+++ Sbjct: 126 PIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156 >gi|56963364|ref|YP_175095.1| transcription elongation factor GreA [Bacillus clausii KSM-K16] gi|81366412|sp|Q5WHM1|GREA_BACSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56909607|dbj|BAD64134.1| transcriptional elongation factor GreA [Bacillus clausii KSM-K16] Length = 158 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 98/149 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + R +++ I AR++GDLSEN+EY +AKE Q EGR+A+L Sbjct: 9 MTAEGKKKLEEELHYLITTRRKEVVERIKVARSFGDLSENSEYDSAKEDQAFVEGRIAQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I+ + G+ ++ G TV L+E G+++ Y IVG E+D G +S SP+ Sbjct: 69 EKMIRNAVMIENEKVDGNVVSLGKTVRLMELPDGEEEEYTIVGSAESDPFEGKISNDSPM 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++L+GK + D + VN PGGE EIL++ Sbjct: 129 AQSLLGKTVNDRVVVNTPGGEMEVEILEI 157 >gi|229592647|ref|YP_002874766.1| transcription elongation factor GreA [Pseudomonas fluorescens SBW25] gi|229364513|emb|CAY52367.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Pseudomonas fluorescens SBW25] Length = 158 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/156 (39%), Positives = 96/156 (61%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E R+ Sbjct: 3 KYPMTVQGAKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A +ID++T+ ++ FG TV + + + Y IVG+ EAD + G +S+ Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKISV 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALI KE GD+++V PGG YEI++V + Sbjct: 123 GSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158 >gi|322373858|ref|ZP_08048393.1| transcription elongation factor GreA [Streptococcus sp. C150] gi|321277230|gb|EFX54300.1| transcription elongation factor GreA [Streptococcus sp. C150] Length = 160 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 93/143 (65%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133 Query: 133 KELGDIISVNAPGGEKTYEILQV 155 K++GD +++ +P G + EIL V Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156 >gi|169632632|ref|YP_001706368.1| transcription elongation factor GreA [Acinetobacter baumannii SDF] gi|238688251|sp|B0VSL8|GREA_ACIBS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169151424|emb|CAP00158.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter baumannii] Length = 158 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 96/146 (65%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VI + + + R+ FG TV++ ++ ++ Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIA L+GK+ GD + + P G Sbjct: 121 SVNSPIALGLLGKKEGDEVKITTPQG 146 >gi|29377378|ref|NP_816532.1| transcription elongation factor GreA [Enterococcus faecalis V583] gi|255970856|ref|ZP_05421442.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T1] gi|255974431|ref|ZP_05425017.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T2] gi|256618301|ref|ZP_05475147.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ATCC 4200] gi|256761231|ref|ZP_05501811.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T3] gi|256852494|ref|ZP_05557870.1| transcription elongation factor GreA [Enterococcus faecalis T8] gi|256958150|ref|ZP_05562321.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis DS5] gi|256960296|ref|ZP_05564467.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Merz96] gi|256962732|ref|ZP_05566903.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis HIP11704] gi|257077423|ref|ZP_05571784.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis JH1] gi|257080712|ref|ZP_05575073.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis E1Sol] gi|257083386|ref|ZP_05577747.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Fly1] gi|257088056|ref|ZP_05582417.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis D6] gi|257091135|ref|ZP_05585496.1| prokaryotic transcription elongation factor greA [Enterococcus faecalis CH188] gi|257417082|ref|ZP_05594076.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis AR01/DG] gi|257417796|ref|ZP_05594790.1| transcription elongation factor greA [Enterococcus faecalis T11] gi|257420586|ref|ZP_05597576.1| transcription elongation factor greA [Enterococcus faecalis X98] gi|294779657|ref|ZP_06745048.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1] gi|300860921|ref|ZP_07107008.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD Ef11] gi|29344845|gb|AAO82602.1| transcription elongation factor GreA [Enterococcus faecalis V583] gi|255961874|gb|EET94350.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T1] gi|255967303|gb|EET97925.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T2] gi|256597828|gb|EEU17004.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ATCC 4200] gi|256682482|gb|EEU22177.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T3] gi|256712348|gb|EEU27380.1| transcription elongation factor GreA [Enterococcus faecalis T8] gi|256948646|gb|EEU65278.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis DS5] gi|256950792|gb|EEU67424.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Merz96] gi|256953228|gb|EEU69860.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis HIP11704] gi|256985453|gb|EEU72755.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis JH1] gi|256988742|gb|EEU76044.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis E1Sol] gi|256991416|gb|EEU78718.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Fly1] gi|256996086|gb|EEU83388.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis D6] gi|256999947|gb|EEU86467.1| prokaryotic transcription elongation factor greA [Enterococcus faecalis CH188] gi|257158910|gb|EEU88870.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ARO1/DG] gi|257159624|gb|EEU89584.1| transcription elongation factor greA [Enterococcus faecalis T11] gi|257162410|gb|EEU92370.1| transcription elongation factor greA [Enterococcus faecalis X98] gi|294453314|gb|EFG21725.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1] gi|295114290|emb|CBL32927.1| transcription elongation factor GreA [Enterococcus sp. 7L76] gi|300849960|gb|EFK77710.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD Ef11] gi|323478879|gb|ADX78318.1| transcription elongation factor greA [Enterococcus faecalis 62] Length = 159 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK+LGD + + PGG+ T +I +V Sbjct: 121 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKV 156 >gi|295399312|ref|ZP_06809294.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius C56-YS93] gi|312110127|ref|YP_003988443.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1] gi|294978778|gb|EFG54374.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius C56-YS93] gi|311215228|gb|ADP73832.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1] Length = 158 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 98/150 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+ Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEARIQT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAIIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+G+ +G+ ++V PGGE +I+ V Sbjct: 128 IAKSLLGRRVGEEVTVQTPGGEMLVKIVAV 157 >gi|227530498|ref|ZP_03960547.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540] gi|227349603|gb|EEJ39894.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540] Length = 158 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 99/151 (65%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q EGR++ Sbjct: 7 FPMTLEGKQKLEQELEDLKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN++ AE+ID + D ++ G V++ E + ++YQIVG+ E+D +G +S S Sbjct: 67 QIENMLQYAEIIDNDDVDKDEVSMGRKVTIKELPDEEPESYQIVGESESDPFNGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++G+ + + P G +IL V Sbjct: 127 PMAKGLLGHKVGEEVEIEIPNGTMKVKILSV 157 >gi|15613839|ref|NP_242142.1| transcription elongation factor GreA [Bacillus halodurans C-125] gi|20138372|sp|Q9KDD7|GREA_BACHD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|10173892|dbj|BAB04995.1| transcriptional elongation factor [Bacillus halodurans C-125] Length = 158 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 98/149 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR++++ Sbjct: 9 MTLEGKKKLEEELEYLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRISQI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AE+I+ S + ++ G TV VE G+++ Y IVG E+D G +S SP+ Sbjct: 69 EKMIRNAEIIEESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEGKISNDSPM 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++L+G + D++ VN PGGE +IL++ Sbjct: 129 AQSLLGHTIDDVVIVNTPGGEMEVKILEI 157 >gi|224023650|ref|ZP_03642016.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM 18228] gi|224016872|gb|EEF74884.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM 18228] Length = 154 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 96/146 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ ELR+ + ERP+++ AI+EAR GDLSENAEY AAKE Q L E ++ +L Sbjct: 4 MSEEGYQKLVAELRYLESVERPKVVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVTTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+ L+GK++GD+ + P G+ + EI Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEI 149 >gi|228472777|ref|ZP_04057535.1| transcription elongation factor GreA [Capnocytophaga gingivalis ATCC 33624] gi|228275828|gb|EEK14594.1| transcription elongation factor GreA [Capnocytophaga gingivalis ATCC 33624] Length = 156 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 92/148 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 7 TEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 66 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S+SSPI Sbjct: 67 ELVASARVIDESQLDTSKVLILSTVKLKNKANNAVMTYTLVAESEADLKTGKISVSSPIG 126 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 R L+GK +GDI + P G EI+++ Sbjct: 127 RGLLGKSVGDIAEIKVPNGILQMEIIEI 154 >gi|312864022|ref|ZP_07724258.1| transcription elongation factor GreA [Streptococcus vestibularis F0396] gi|322517498|ref|ZP_08070370.1| transcription elongation factor GreA [Streptococcus vestibularis ATCC 49124] gi|311100435|gb|EFQ58642.1| transcription elongation factor GreA [Streptococcus vestibularis F0396] gi|322123874|gb|EFX95437.1| transcription elongation factor GreA [Streptococcus vestibularis ATCC 49124] Length = 160 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 93/143 (65%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133 Query: 133 KELGDIISVNAPGGEKTYEILQV 155 K++GD +++ +P G + EIL V Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156 >gi|86143814|ref|ZP_01062190.1| putative transcription elongation factor [Leeuwenhoekiella blandensis MED217] gi|85829857|gb|EAQ48319.1| putative transcription elongation factor [Leeuwenhoekiella blandensis MED217] Length = 158 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 96/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E R++++E Sbjct: 8 TAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A +ID S + + +TV + + +G + Y++V EAD++SG +S+ SPI Sbjct: 68 ELVANARIIDESQLDTSKALVHSTVKIKNQTNGMQMTYKLVAQSEADLKSGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++G++ V P G ++IL++ Sbjct: 128 KGLLGKKVGEVAEVQVPNGTMKFDILEI 155 >gi|116627175|ref|YP_819794.1| transcription elongation factor GreA [Streptococcus thermophilus LMD-9] gi|122268222|sp|Q03MH4|GREA_STRTD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116100452|gb|ABJ65598.1| transcription elongation factor GreA [Streptococcus thermophilus LMD-9] Length = 160 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 92/142 (64%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I A Sbjct: 15 QLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRYA 74 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 E++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK Sbjct: 75 EIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIGK 134 Query: 134 ELGDIISVNAPGGEKTYEILQV 155 ++GD +++ +P G + EIL V Sbjct: 135 KVGDKVAIESPAGSYSVEILSV 156 >gi|228476529|ref|ZP_04061219.1| transcription elongation factor GreA [Streptococcus salivarius SK126] gi|228251950|gb|EEK10996.1| transcription elongation factor GreA [Streptococcus salivarius SK126] Length = 160 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 93/143 (65%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTNDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133 Query: 133 KELGDIISVNAPGGEKTYEILQV 155 K++GD +++ +P G + EIL V Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156 >gi|58337782|ref|YP_194367.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227904432|ref|ZP_04022237.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC 4796] gi|58255099|gb|AAV43336.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227867807|gb|EEJ75228.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC 4796] Length = 158 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 98/142 (69%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K++ EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLEAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PGG+ Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148 >gi|161507838|ref|YP_001577802.1| transcription elongation [Lactobacillus helveticus DPC 4571] gi|160348827|gb|ABX27501.1| transcription elongation [Lactobacillus helveticus DPC 4571] Length = 158 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 97/142 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+ Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP Sbjct: 67 VEEMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA+AL+GK+ G+ +S+ PG + Sbjct: 127 IAQALLGKKKGETVSITTPGSQ 148 >gi|55820339|ref|YP_138781.1| transcription elongation factor GreA [Streptococcus thermophilus LMG 18311] gi|55822230|ref|YP_140671.1| transcription elongation factor GreA [Streptococcus thermophilus CNRZ1066] gi|81559864|sp|Q5M1J6|GREA_STRT1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81561040|sp|Q5M638|GREA_STRT2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|55736324|gb|AAV59966.1| transcription elongation factor [Streptococcus thermophilus LMG 18311] gi|55738215|gb|AAV61856.1| transcription elongation factor [Streptococcus thermophilus CNRZ1066] gi|312277654|gb|ADQ62311.1| Transcription elongation factor greA [Streptococcus thermophilus ND03] Length = 160 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 92/142 (64%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I A Sbjct: 15 QLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFIEGQIQILETKIRYA 74 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 E++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK Sbjct: 75 EIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIGK 134 Query: 134 ELGDIISVNAPGGEKTYEILQV 155 ++GD +++ +P G + EIL V Sbjct: 135 KVGDKVAIESPAGSYSVEILSV 156 >gi|56421082|ref|YP_148400.1| transcription elongation factor GreA [Geobacillus kaustophilus HTA426] gi|261418437|ref|YP_003252119.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61] gi|297529289|ref|YP_003670564.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3] gi|319767603|ref|YP_004133104.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52] gi|81346788|sp|Q5KWV4|GREA_GEOKA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56380924|dbj|BAD76832.1| transcription elongation factor [Geobacillus kaustophilus HTA426] gi|261374894|gb|ACX77637.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61] gi|297252541|gb|ADI25987.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3] gi|317112469|gb|ADU94961.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52] Length = 158 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 97/150 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+ Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESRIQM 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+G+ +GD ++V PGGE +I+ V Sbjct: 128 IAKSLLGRRVGDEVTVQTPGGEMLVKIVAV 157 >gi|326336154|ref|ZP_08202326.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691663|gb|EGD33630.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 156 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 92/148 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 7 TEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLELKIAKLE 66 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S+SSPI Sbjct: 67 ELVANARVIDESQLDTSKVLILSTVKLKNKANNAIMTYTLVAESEADLKAGKISVSSPIG 126 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 R L+GK +GDI + P G EI+++ Sbjct: 127 RGLLGKSVGDIAEIKVPNGVLQMEIIEI 154 >gi|288555392|ref|YP_003427327.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4] gi|288546552|gb|ADC50435.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4] Length = 158 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR+A+L Sbjct: 9 MTEDGKRKLEEELEFLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIAQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I+ S ++ G V +E GD++ Y IVG E+D G +S SP+ Sbjct: 69 EKMIRNAVMIEEEAGSSHAVSLGKRVKFIELPDGDEEEYTIVGSAESDPAEGKISNDSPM 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++++G+ +GD ++VN P GE EIL++ Sbjct: 129 AQSILGRSVGDKVTVNTPAGEMKIEILEI 157 >gi|332291987|ref|YP_004430596.1| transcription elongation factor GreA [Krokinobacter diaphorus 4H-3-7-5] gi|332170073|gb|AEE19328.1| transcription elongation factor GreA [Krokinobacter diaphorus 4H-3-7-5] Length = 158 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E R+A+LE Sbjct: 8 TPEGLKKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 N+ + A +ID S + ++ +TV + + +G Y++V EAD++ GL+S+ SPI Sbjct: 68 NLASNARIIDESQLDTSKVLVHSTVKIKNQINGATMTYKLVAQNEADIKKGLISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GKE+G++ + P G ++++ + Sbjct: 128 KGLLGKEVGEVAEIQVPSGVMKFDVVSI 155 >gi|268678843|ref|YP_003303274.1| transcription elongation factor GreA [Sulfurospirillum deleyianum DSM 6946] gi|268616874|gb|ACZ11239.1| transcription elongation factor GreA [Sulfurospirillum deleyianum DSM 6946] Length = 167 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 97/158 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G+ K+ EL ++ +RP + + AR++GDL ENAEY AAKE + Sbjct: 1 MNTKEPMTEYGYKKLTDELSDLKKRQRPETVIELDIARSHGDLKENAEYHAAKEKLAFID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL ++++R++VID ST D++ FG+T++L + ++ Y IVG E++ GL+ Sbjct: 61 SRIAELSDLVSRSQVIDPSTYEHDKVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+++ L+G+ + + + + P G + Y IL + + Sbjct: 121 SYHSPLSKQLMGRCVDEEVMIKLPVGTQEYAILNITYC 158 >gi|256819149|ref|YP_003140428.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM 7271] gi|315224575|ref|ZP_07866401.1| transcription elongation factor GreA [Capnocytophaga ochracea F0287] gi|256580732|gb|ACU91867.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM 7271] gi|314945441|gb|EFS97464.1| transcription elongation factor GreA [Capnocytophaga ochracea F0287] Length = 157 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 4/150 (2%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 8 TAEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSP 125 ++ A +ID S + ++ +TV L KN +K Y +V + EAD+++G +S+SSP Sbjct: 68 ELVANARIIDESQLDVSKVLVLSTVKL--KNLANKMEITYTLVAESEADLKAGKISVSSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 I + L+GK +G+I + P G EIL++ Sbjct: 126 IGKGLLGKSVGEIAEIKVPNGTLKLEILEI 155 >gi|152976794|ref|YP_001376311.1| transcription elongation factor GreA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189042233|sp|A7GT58|GREA_BACCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152025546|gb|ABS23316.1| transcription elongation factor GreA [Bacillus cytotoxicus NVH 391-98] Length = 158 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKEKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ + + PGGE EI+ V Sbjct: 128 IAKSLLGKQIGEKVVIQTPGGEMQVEIISV 157 >gi|312892424|ref|ZP_07751919.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM 18603] gi|311295208|gb|EFQ72382.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM 18603] Length = 157 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 101/155 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D T +G +K+++EL++ + R I AI+EAR GDLSENAEY AAK+ Q +E Sbjct: 1 MADVAYYTKEGLEKLKEELQYLKTTGRQIISNAIAEARDKGDLSENAEYDAAKDAQGHHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A ++D S + ++ + V + +G +YQ+V + EAD++SG + Sbjct: 61 AKIAKLEEAMSNARLLDDSKLDLSKVLALSIVKIKNLKNGATMSYQLVSESEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S +SPIA+ L+GK++G++I + P G+ +EIL++ Sbjct: 121 STASPIAKGLLGKKVGEVIEITVPAGKIDFEILEI 155 >gi|145220082|ref|YP_001130791.1| transcription elongation factor GreA [Prosthecochloris vibrioformis DSM 265] gi|189042244|sp|A4SFN0|GREA_PROVI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145206246|gb|ABP37289.1| transcription elongation factor GreA [Chlorobium phaeovibrioides DSM 265] Length = 159 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 100/159 (62%), Gaps = 5/159 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T G+++++ EL R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRVYLTRDGYNRLKDELHELLHVTRAEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117 R+A+LE+ ++ A ++D + D++ +V L+ N DKK Y +V +E+D Sbjct: 61 ARIADLESKLSSATILDPKHIKTDKVYILTSVELL--NLDDKKETLEYTLVSSEESDSDL 118 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S+ SP+ RALIGK +GD +++ P GE YE+ ++ Sbjct: 119 GKISVRSPVGRALIGKAVGDKVTIIVPKGELHYEVKKIF 157 >gi|323705605|ref|ZP_08117179.1| GreA/GreB family elongation factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535082|gb|EGB24859.1| GreA/GreB family elongation factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 157 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 99/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A +E ++ A+VID ++ D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEDFKEEAEYTIVGSTEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +AL+GK++GD ISV P G ++L++ Sbjct: 121 SDESPIGKALLGKKVGDTISVEVPAGIIKLKVLEI 155 >gi|218259539|ref|ZP_03475246.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii DSM 18315] gi|218225022|gb|EEC97672.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii DSM 18315] Length = 156 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+L Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I+ A +ID S + D + V + + Y +V D EA+++ G +++S+PI Sbjct: 66 KGLISNARLIDESRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GDI+ + P G ++EI+ + Sbjct: 126 AQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154 >gi|229543750|ref|ZP_04432810.1| transcription elongation factor GreA [Bacillus coagulans 36D1] gi|229328170|gb|EEN93845.1| transcription elongation factor GreA [Bacillus coagulans 36D1] Length = 156 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 8 PMTQDGKEKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +EN+I A++I+ D ++ G +V+ VE G+++ Y IVG EAD G +S SP Sbjct: 68 IENMIRNAKIIEDD--GTDTVSLGKSVTFVELPDGEEETYTIVGSAEADPFEGKISNDSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK +G+ ++V PGG+ +I+ + Sbjct: 126 IAKSLLGKSVGEEVTVQTPGGDMRVKIISI 155 >gi|227510504|ref|ZP_03940553.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513513|ref|ZP_03943562.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227524655|ref|ZP_03954704.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227083386|gb|EEI18698.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227088139|gb|EEI23451.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227190156|gb|EEI70223.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 158 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 96/150 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G DK+Q+EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R+ Sbjct: 8 PMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESRITT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A++ID D + G V+ E + + Y IVG EAD SG +S SP Sbjct: 68 IEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+ L+G L + + ++ P G+ +IL+V Sbjct: 128 IAKGLLGHRLNEEVVIHIPAGDMKVKILEV 157 >gi|205374243|ref|ZP_03227042.1| transcription elongation factor GreA [Bacillus coahuilensis m4-4] Length = 158 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 92/142 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G +K++ EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 8 PMTQAGKEKLENELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIVT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE +I A++I M+ D + G TV+ VE G++++Y IVG EAD G +S SP Sbjct: 68 LEAMIRNAKIIQEDEMNSDTVTLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGE 147 IA++L+G+++ D +S+ PGGE Sbjct: 128 IAKSLMGRKVEDEVSIQTPGGE 149 >gi|254457427|ref|ZP_05070855.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] gi|207086219|gb|EDZ63503.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] Length = 174 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ +G+D + +E ++ + E+P+ + A A GD SENA+Y AAKE + R+ Sbjct: 2 KEPMSIEGYDLLVEEFKFLLEVEKPKTAEEKLVAAAQGDRSENADYHAAKEKLRFIDKRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++I ++++ID S+ ++++FG+TV ++ ++ +++ Y + G E++ + GL+S+ Sbjct: 62 FYLNSMIQKSQIIDPSSYEHNKVSFGSTVKILNIDTDEEETYTLCGVLESEPEHGLISVH 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALIGKE+ D +N P G+K YEIL++ + Sbjct: 122 SPIAKALIGKEVEDEFKINLPMGKKEYEILEIEY 155 >gi|255536258|ref|YP_003096629.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium 3519-10] gi|255342454|gb|ACU08567.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium 3519-10] Length = 170 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G DK++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E +++++ Sbjct: 19 VTKEGLDKMKAELEQLETIERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMKISKI 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++I+ A+VID + + +++ TV L ++ ++ + +V D E+D++SG +S+++PI Sbjct: 79 KDIVINAKVIDETQLDTSKVSILTTVRLKNNDTKAEQKFTLVPDNESDLKSGRISVNTPI 138 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 A+ L+GK +G+ + P G K ++E+L++ Sbjct: 139 AKGLLGKTVGEKADIVLPNGNKLSFEVLEI 168 >gi|86131276|ref|ZP_01049875.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] gi|85818687|gb|EAQ39847.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] Length = 158 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 93/148 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E R+++LE Sbjct: 8 TAEGLQKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + A +ID S + ++ +TV + + +G Y++V EAD++ GL+S+ SPI Sbjct: 68 ELAANARIIDESQLDTSKVLVHSTVKIKNQTNGATMTYKLVAQNEADIKKGLISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GKE+GD+ + P G ++++ + Sbjct: 128 KGLLGKEVGDVAEIQVPSGIMKFDVVSI 155 >gi|313886047|ref|ZP_07819785.1| transcription elongation factor GreA [Porphyromonas asaccharolytica PR426713P-I] gi|332299382|ref|YP_004441303.1| transcription elongation factor GreA [Porphyromonas asaccharolytica DSM 20707] gi|312924577|gb|EFR35348.1| transcription elongation factor GreA [Porphyromonas asaccharolytica PR426713P-I] gi|332176445|gb|AEE12135.1| transcription elongation factor GreA [Porphyromonas asaccharolytica DSM 20707] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E ++A L Sbjct: 6 MTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLEDKIAML 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S+++PI Sbjct: 66 KAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKISVNTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GDI + P G +EIL++ Sbjct: 126 AKGLLGKKVGDIAEIQVPAGTLVFEILEI 154 >gi|213964046|ref|ZP_03392289.1| transcription elongation factor GreA [Capnocytophaga sputigena Capno] gi|213953328|gb|EEB64667.1| transcription elongation factor GreA [Capnocytophaga sputigena Capno] Length = 157 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 4/150 (2%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 8 TPEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSP 125 ++ A +ID S + ++ +TV L KN +K Y +V + EAD+++G +S+SSP Sbjct: 68 ELVANARIIDESQLDVSKVLVLSTVKL--KNLANKMEITYTLVAESEADLKAGKISVSSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 I + L+GK +G+I + P G EIL++ Sbjct: 126 IGKGLLGKSVGEIAEIKVPNGTLKMEILEI 155 >gi|300774299|ref|ZP_07084163.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC 35910] gi|300506943|gb|EFK38077.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC 35910] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++L Sbjct: 5 VTKEGLEKMKAELEQLETVERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISKL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++I+ +++ID S + +++ TV L + ++ + +V D E+D+++G +S+++PI Sbjct: 65 KDVISTSKIIDESQLDTSKVSILTTVKLKNNATKQEQVFTLVPDNESDLKTGKISVNTPI 124 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 A+ L+GK +G+ + P G K ++E+L + Sbjct: 125 AKGLLGKAIGETAEITLPNGNKLSFEVLDI 154 >gi|298206886|ref|YP_003715065.1| putative transcription elongation factor [Croceibacter atlanticus HTCC2559] gi|83849520|gb|EAP87388.1| putative transcription elongation factor [Croceibacter atlanticus HTCC2559] Length = 158 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E ++++LE Sbjct: 8 TEEGLKKLRDELDLLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMKISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ A VID S + ++ ++V + + +G + Y++V E+D++SG +S+ SPI Sbjct: 68 GVLSNARVIDDSQLDTSKVLIHSSVKIKHQGNGAEMTYKLVAQSESDLKSGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK+ GD+ V P G +++++V W Sbjct: 128 KGLLGKQEGDVAEVTTPNGTIKFDVIKV-W 156 >gi|229175053|ref|ZP_04302571.1| Transcription elongation factor greA [Bacillus cereus MM3] gi|228608421|gb|EEK65725.1| Transcription elongation factor greA [Bacillus cereus MM3] Length = 161 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160 >gi|312870533|ref|ZP_07730651.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] gi|311093930|gb|EFQ52256.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] Length = 158 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 96/151 (63%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A Sbjct: 7 FPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D SG +S S Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLSGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++G+ + + P G +IL V Sbjct: 127 PMAKGLLGHKIGEEVEIEIPSGTMKVKILDV 157 >gi|189499862|ref|YP_001959332.1| transcription elongation factor GreA [Chlorobium phaeobacteroides BS1] gi|238692290|sp|B3EPH3|GREA_CHLPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189495303|gb|ACE03851.1| transcription elongation factor GreA [Chlorobium phaeobacteroides BS1] Length = 160 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 99/160 (61%), Gaps = 6/160 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T G+++++ EL + + R +++ I+EARA+GDLSENAEY AA+E Q E Sbjct: 1 MSDRVYLTKDGYNRLRDELTVLKSDVRKEVLEKIAEARAHGDLSENAEYDAAREQQRQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK----NYQIVGDQEADVQ 116 ++ +LE+ +TRA ++D + DR+ +V L KN +K Y +V EAD Sbjct: 61 NKIGDLESKLTRATILDPKQVKTDRVYILTSVKL--KNLDAQKEEIIEYTLVSSDEADTD 118 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S+ SP+ ++L+GK +GD + + P GE YEIL++ Sbjct: 119 LGKISVRSPVGKSLLGKAVGDKVQIQVPKGELHYEILEIF 158 >gi|228954664|ref|ZP_04116687.1| Transcription elongation factor greA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228981071|ref|ZP_04141372.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407] gi|228778612|gb|EEM26878.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407] gi|228804991|gb|EEM51587.1| Transcription elongation factor greA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 161 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160 >gi|332520122|ref|ZP_08396586.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4] gi|332044681|gb|EGI80875.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4] Length = 157 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K+++EL+ + ER + AI+EAR GDLSENAEY AAKE Q + E R+++LE Sbjct: 8 TAEGLKKLREELKHLKDVERVKASNAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + A +ID S M +I + V + + +G + NY +V D EAD+ SG +S++SPI Sbjct: 68 DQLAGARIIDESQMDTSKILVLSKVKIKNQTNGMEMNYTLVADGEADLASGKISVNSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD+ ++ P G ++I+++ Sbjct: 128 KGLLGKSVGDVAEISVPSGIMKFDIIEI 155 >gi|30022455|ref|NP_834086.1| transcription elongation factor GreA [Bacillus cereus ATCC 14579] gi|296504870|ref|YP_003666570.1| transcription elongation factor GreA [Bacillus thuringiensis BMB171] gi|38372300|sp|Q817Z6|GREA_BACCR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|29898013|gb|AAP11287.1| Transcription elongation factor greA [Bacillus cereus ATCC 14579] gi|296325922|gb|ADH08850.1| transcription elongation factor GreA [Bacillus thuringiensis BMB171] gi|326942161|gb|AEA18057.1| transcription elongation factor GreA [Bacillus thuringiensis serovar chinensis CT-43] Length = 158 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 128 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 157 >gi|229081644|ref|ZP_04214139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2] gi|228701648|gb|EEL54139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2] Length = 175 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160 >gi|255011567|ref|ZP_05283693.1| putative transcription elongation factor [Bacteroides fragilis 3_1_12] gi|313149395|ref|ZP_07811588.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12] gi|313138162|gb|EFR55522.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12] Length = 154 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+PI Sbjct: 64 KAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + E++ + + Sbjct: 124 AQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154 >gi|332877001|ref|ZP_08444754.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685109|gb|EGJ57953.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 157 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/148 (40%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE Sbjct: 8 TAEGMKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A +ID S + ++ +TV L + + Y +V + EAD+++G +S+SSPI Sbjct: 68 KLVANARIIDESQLDVSKVLVLSTVKLKNLANNMQLTYTLVAESEADLKAGKISVSSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G+I + P G E+L++ Sbjct: 128 KGLLGKSVGEIAEIKVPNGTLKMEVLEI 155 >gi|229111852|ref|ZP_04241398.1| Transcription elongation factor greA [Bacillus cereus Rock1-15] gi|228671608|gb|EEL26906.1| Transcription elongation factor greA [Bacillus cereus Rock1-15] Length = 189 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174 >gi|218233280|ref|YP_002369189.1| transcription elongation factor GreA [Bacillus cereus B4264] gi|228923131|ref|ZP_04086422.1| Transcription elongation factor greA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941547|ref|ZP_04104096.1| Transcription elongation factor greA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960651|ref|ZP_04122296.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974477|ref|ZP_04135044.1| Transcription elongation factor greA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229071888|ref|ZP_04205099.1| Transcription elongation factor greA [Bacillus cereus F65185] gi|229129660|ref|ZP_04258628.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4] gi|229152583|ref|ZP_04280772.1| Transcription elongation factor greA [Bacillus cereus m1550] gi|229180655|ref|ZP_04307995.1| Transcription elongation factor greA [Bacillus cereus 172560W] gi|229192591|ref|ZP_04319552.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876] gi|218161237|gb|ACK61229.1| transcription elongation factor GreA [Bacillus cereus B4264] gi|228590898|gb|EEK48756.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876] gi|228602800|gb|EEK60281.1| Transcription elongation factor greA [Bacillus cereus 172560W] gi|228630844|gb|EEK87484.1| Transcription elongation factor greA [Bacillus cereus m1550] gi|228653777|gb|EEL09647.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4] gi|228711184|gb|EEL63148.1| Transcription elongation factor greA [Bacillus cereus F65185] gi|228785194|gb|EEM33206.1| Transcription elongation factor greA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799015|gb|EEM45987.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818103|gb|EEM64179.1| Transcription elongation factor greA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836510|gb|EEM81860.1| Transcription elongation factor greA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 175 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174 >gi|229019601|ref|ZP_04176414.1| Transcription elongation factor greA [Bacillus cereus AH1273] gi|229025839|ref|ZP_04182237.1| Transcription elongation factor greA [Bacillus cereus AH1272] gi|229032029|ref|ZP_04188012.1| Transcription elongation factor greA [Bacillus cereus AH1271] gi|228729274|gb|EEL80268.1| Transcription elongation factor greA [Bacillus cereus AH1271] gi|228735450|gb|EEL86047.1| Transcription elongation factor greA [Bacillus cereus AH1272] gi|228741681|gb|EEL91868.1| Transcription elongation factor greA [Bacillus cereus AH1273] Length = 175 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174 >gi|260655320|ref|ZP_05860808.1| transcription elongation factor GreA [Jonquetella anthropi E3_33 E1] gi|260629768|gb|EEX47962.1| transcription elongation factor GreA [Jonquetella anthropi E3_33 E1] Length = 152 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 96/149 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + EL + EER RI K I EAR++GDLSENAEY AAK+ Q+ EG++ L Sbjct: 1 MTRQGYDALMAELIHLRSEERYRIAKRIEEARSFGDLSENAEYAAAKDEQSKLEGKIQSL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + RAEV+D S++ G IA G V+L+++ + Y IV +EA+ + G +S +SP+ Sbjct: 61 EYQLNRAEVVDSSSLDGSLIAVGTQVTLMDQTYRKQFVYSIVNSKEANPKEGRISSASPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RA++ + GD + V P G + ++L++ Sbjct: 121 GRAILNRHKGDEVIVKTPKGIRKLKVLKI 149 >gi|206969603|ref|ZP_03230557.1| transcription elongation factor GreA [Bacillus cereus AH1134] gi|206735291|gb|EDZ52459.1| transcription elongation factor GreA [Bacillus cereus AH1134] Length = 158 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 8/154 (5%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVI----DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 LEN+I A +I +IST+ + G TV+ E +GD++ Y IVG EAD G +S Sbjct: 68 LENMIRNAVIIKDTGEISTV----VTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 124 NDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 157 >gi|282858005|ref|ZP_06267206.1| transcription elongation factor GreA [Pyramidobacter piscolens W5455] gi|282584159|gb|EFB89526.1| transcription elongation factor GreA [Pyramidobacter piscolens W5455] Length = 164 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 98/153 (64%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T +G+DK+ EL+ + EER +I + I EAR++GDLSENAEY AAK+ Q EG+ Sbjct: 9 DTVLMTQEGYDKLSTELKQLRSEERYKIARRIEEARSFGDLSENAEYAAAKDDQAKLEGK 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E ++RA++ID +++ ++ G TV++++ + Y IV +E+D + GL+S Sbjct: 69 IQVMEYQLSRAKIIDSASLDNSHVSVGTTVTIMDITHNKEFVYSIVSSEESDPEKGLISS 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ RAL+ K +GD + V P G + I ++ Sbjct: 129 VSPVGRALMNKRVGDEVPVKVPMGIRKLRIRKI 161 >gi|228469383|ref|ZP_04054397.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3] gi|228309067|gb|EEK17697.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3] Length = 156 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E ++A L Sbjct: 6 MTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLEDKIAML 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S+++PI Sbjct: 66 KAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKISVNTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G +EIL++ Sbjct: 126 AKGLLGKKVGDVAEIQVPAGTLVFEILEI 154 >gi|229163328|ref|ZP_04291280.1| Transcription elongation factor greA [Bacillus cereus R309803] gi|228620109|gb|EEK76983.1| Transcription elongation factor greA [Bacillus cereus R309803] Length = 186 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160 >gi|198274274|ref|ZP_03206806.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135] gi|198272949|gb|EDY97218.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135] Length = 154 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 98/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L Sbjct: 4 MSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KATIGDAKIIDTSKLKTDTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + EI+ + + Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEIMGISF 154 >gi|171780266|ref|ZP_02921170.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281614|gb|EDT47049.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 160 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 85/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQNIETKIRYAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI+++ +P G Sbjct: 88 AIGKTVTVQEVGTTDKDVYHIVGAAGADIFSGRISNESPIAQALIGKKTGDIVTIESPAG 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 SYDVEIISV 156 >gi|65321747|ref|ZP_00394706.1| COG0782: Transcription elongation factor [Bacillus anthracis str. A2012] gi|228917013|ref|ZP_04080573.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948093|ref|ZP_04110377.1| Transcription elongation factor greA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093450|ref|ZP_04224553.1| Transcription elongation factor greA [Bacillus cereus Rock3-42] gi|228689921|gb|EEL43725.1| Transcription elongation factor greA [Bacillus cereus Rock3-42] gi|228811451|gb|EEM57788.1| Transcription elongation factor greA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842620|gb|EEM87708.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 161 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160 >gi|317128247|ref|YP_004094529.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM 2522] gi|315473195|gb|ADU29798.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM 2522] Length = 157 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MVD K +T +G +K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MVDEKHYMTLEGKEKLEKELEYLKTERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR++ +E +I A +I + + + G TVS E GD++ Y IVG EAD G Sbjct: 61 EGRISTIEKMIRNAVMIKEDSTNTSVVTLGKTVSFKELPDGDEEEYTIVGRAEADPLEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A++L+GK +G ++V PGG+ EIL+V Sbjct: 121 ISNDSPMAQSLMGKSVGQKVTVATPGGDMEVEILEV 156 >gi|228902907|ref|ZP_04067048.1| Transcription elongation factor greA [Bacillus thuringiensis IBL 4222] gi|228856691|gb|EEN01210.1| Transcription elongation factor greA [Bacillus thuringiensis IBL 4222] Length = 161 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160 >gi|304315887|ref|YP_003851032.1| transcription elongation factor GreA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777389|gb|ADL67948.1| transcription elongation factor GreA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 157 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A +E ++ A+VID ++ D+++ G TV + ++ ++ Y IVG EAD + + Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEEFKEESEYTIVGSTEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +ALIGK++GD +SV P G ++L++ Sbjct: 121 SDESPIGKALIGKKVGDSVSVEVPAGIIKLKVLEI 155 >gi|116491243|ref|YP_810787.1| transcription elongation factor GreA [Oenococcus oeni PSU-1] gi|290890788|ref|ZP_06553855.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429] gi|122276575|sp|Q04EK0|GREA_OENOB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116091968|gb|ABJ57122.1| transcription elongation factor GreA [Oenococcus oeni PSU-1] gi|290479560|gb|EFD88217.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429] Length = 162 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q EGR+ + Sbjct: 8 PMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAFVEGRVKQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG +S SP Sbjct: 68 LQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155 + +AL+ + GD + + P T EIL V Sbjct: 128 MGKALLDHKTGDKVEIPLPENHSVTVEILHV 158 >gi|30264449|ref|NP_846826.1| transcription elongation factor GreA [Bacillus anthracis str. Ames] gi|47529904|ref|YP_021253.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames Ancestor'] gi|47566566|ref|ZP_00237388.1| transcription elongation factor GreA [Bacillus cereus G9241] gi|49187271|ref|YP_030523.1| transcription elongation factor GreA [Bacillus anthracis str. Sterne] gi|49481456|ref|YP_038430.1| transcription elongation factor GreA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141127|ref|YP_085702.1| transcription elongation factor GreA [Bacillus cereus E33L] gi|165872735|ref|ZP_02217363.1| transcription elongation factor GreA [Bacillus anthracis str. A0488] gi|167634587|ref|ZP_02392907.1| transcription elongation factor GreA [Bacillus anthracis str. A0442] gi|167638510|ref|ZP_02396786.1| transcription elongation factor GreA [Bacillus anthracis str. A0193] gi|170687498|ref|ZP_02878715.1| transcription elongation factor GreA [Bacillus anthracis str. A0465] gi|170707370|ref|ZP_02897824.1| transcription elongation factor GreA [Bacillus anthracis str. A0389] gi|177653224|ref|ZP_02935476.1| transcription elongation factor GreA [Bacillus anthracis str. A0174] gi|227817158|ref|YP_002817167.1| transcription elongation factor GreA [Bacillus anthracis str. CDC 684] gi|229602899|ref|YP_002868667.1| transcription elongation factor GreA [Bacillus anthracis str. A0248] gi|38372311|sp|Q81LK9|GREA_BACAN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81394760|sp|Q6HDE6|GREA_BACHK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81686118|sp|Q634G5|GREA_BACCZ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799545|sp|C3P968|GREA_BACAA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799546|sp|C3L5Y5|GREA_BACAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|30259107|gb|AAP28312.1| transcription elongation factor GreA [Bacillus anthracis str. Ames] gi|47505052|gb|AAT33728.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames Ancestor'] gi|47556596|gb|EAL14928.1| transcription elongation factor GreA [Bacillus cereus G9241] gi|49181198|gb|AAT56574.1| transcription elongation factor GreA [Bacillus anthracis str. Sterne] gi|49333012|gb|AAT63658.1| transcription elongation factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974596|gb|AAU16146.1| transcription elongation factor [Bacillus cereus E33L] gi|164711511|gb|EDR17060.1| transcription elongation factor GreA [Bacillus anthracis str. A0488] gi|167513358|gb|EDR88728.1| transcription elongation factor GreA [Bacillus anthracis str. A0193] gi|167530039|gb|EDR92774.1| transcription elongation factor GreA [Bacillus anthracis str. A0442] gi|170127614|gb|EDS96487.1| transcription elongation factor GreA [Bacillus anthracis str. A0389] gi|170668693|gb|EDT19439.1| transcription elongation factor GreA [Bacillus anthracis str. A0465] gi|172081506|gb|EDT66578.1| transcription elongation factor GreA [Bacillus anthracis str. A0174] gi|227003868|gb|ACP13611.1| transcription elongation factor GreA [Bacillus anthracis str. CDC 684] gi|229267307|gb|ACQ48944.1| transcription elongation factor GreA [Bacillus anthracis str. A0248] Length = 158 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157 >gi|153806042|ref|ZP_01958710.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185] gi|149130719|gb|EDM21925.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185] Length = 176 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q L E R+ +L Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGLLEMRINKL 85 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 86 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 145 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G+ E++ + Sbjct: 146 AQGLLGKKIGDVAEITVPQGKIALEVVNI 174 >gi|218899548|ref|YP_002447959.1| transcription elongation factor GreA [Bacillus cereus G9842] gi|228967454|ref|ZP_04128483.1| Transcription elongation factor greA [Bacillus thuringiensis serovar sotto str. T04001] gi|229048087|ref|ZP_04193660.1| Transcription elongation factor greA [Bacillus cereus AH676] gi|229146950|ref|ZP_04275314.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24] gi|218545656|gb|ACK98050.1| transcription elongation factor GreA [Bacillus cereus G9842] gi|228636549|gb|EEK93015.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24] gi|228723242|gb|EEL74614.1| Transcription elongation factor greA [Bacillus cereus AH676] gi|228792231|gb|EEM39804.1| Transcription elongation factor greA [Bacillus thuringiensis serovar sotto str. T04001] Length = 175 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174 >gi|118479541|ref|YP_896692.1| transcription elongation factor GreA [Bacillus thuringiensis str. Al Hakam] gi|190566829|ref|ZP_03019745.1| transcription elongation factor GreA [Bacillus anthracis Tsiankovskii-I] gi|196034522|ref|ZP_03101931.1| transcription elongation factor GreA [Bacillus cereus W] gi|196039303|ref|ZP_03106609.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99] gi|196044918|ref|ZP_03112152.1| transcription elongation factor GreA [Bacillus cereus 03BB108] gi|218905574|ref|YP_002453408.1| transcription elongation factor GreA [Bacillus cereus AH820] gi|225866361|ref|YP_002751739.1| transcription elongation factor GreA [Bacillus cereus 03BB102] gi|228929424|ref|ZP_04092445.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935700|ref|ZP_04098513.1| Transcription elongation factor greA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228987631|ref|ZP_04147745.1| Transcription elongation factor greA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123920|ref|ZP_04253112.1| Transcription elongation factor greA [Bacillus cereus 95/8201] gi|229157995|ref|ZP_04286066.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342] gi|229186619|ref|ZP_04313780.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1] gi|254684135|ref|ZP_05147995.1| transcription elongation factor GreA [Bacillus anthracis str. CNEVA-9066] gi|254721967|ref|ZP_05183756.1| transcription elongation factor GreA [Bacillus anthracis str. A1055] gi|254736482|ref|ZP_05194188.1| transcription elongation factor GreA [Bacillus anthracis str. Western North America USA6153] gi|254741520|ref|ZP_05199207.1| transcription elongation factor GreA [Bacillus anthracis str. Kruger B] gi|254750958|ref|ZP_05202997.1| transcription elongation factor GreA [Bacillus anthracis str. Vollum] gi|254757713|ref|ZP_05209740.1| transcription elongation factor GreA [Bacillus anthracis str. Australia 94] gi|300119200|ref|ZP_07056897.1| transcription elongation factor GreA [Bacillus cereus SJ1] gi|301055888|ref|YP_003794099.1| transcription elongation factor [Bacillus anthracis CI] gi|118418766|gb|ABK87185.1| transcription elongation factor GreA [Bacillus thuringiensis str. Al Hakam] gi|190561820|gb|EDV15789.1| transcription elongation factor GreA [Bacillus anthracis Tsiankovskii-I] gi|195993064|gb|EDX57023.1| transcription elongation factor GreA [Bacillus cereus W] gi|196024406|gb|EDX63079.1| transcription elongation factor GreA [Bacillus cereus 03BB108] gi|196029930|gb|EDX68531.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99] gi|218538607|gb|ACK91005.1| transcription elongation factor GreA [Bacillus cereus AH820] gi|225789601|gb|ACO29818.1| transcription elongation factor GreA [Bacillus cereus 03BB102] gi|228596878|gb|EEK54537.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1] gi|228625448|gb|EEK82204.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342] gi|228659222|gb|EEL14870.1| Transcription elongation factor greA [Bacillus cereus 95/8201] gi|228772091|gb|EEM20543.1| Transcription elongation factor greA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228823938|gb|EEM69757.1| Transcription elongation factor greA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830212|gb|EEM75828.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|298723420|gb|EFI64165.1| transcription elongation factor GreA [Bacillus cereus SJ1] gi|300378057|gb|ADK06961.1| transcription elongation factor [Bacillus cereus biovar anthracis str. CI] Length = 175 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174 >gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus thermodenitrificans NG80-2] gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16] gi|166200664|sp|A4IR71|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans NG80-2] gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16] Length = 158 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+ Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESRIQM 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE +I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S SP Sbjct: 68 LETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++LIG +GD ++V PGGE +I+ V Sbjct: 128 IAKSLIGHRVGDEVTVQTPGGEMLVKIVAV 157 >gi|333029629|ref|ZP_08457690.1| transcription elongation factor GreA [Bacteroides coprosuis DSM 18011] gi|332740226|gb|EGJ70708.1| transcription elongation factor GreA [Bacteroides coprosuis DSM 18011] Length = 154 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ G++ + +ELR + +RP I + I+EAR GDLSENAEY AAKE Q + E ++ L Sbjct: 4 MSESGYNDLMEELRELETVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGMLEMKINRL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + II A +ID S +S D + TV L +G K Y IV + EAD++ G +++S+PI Sbjct: 64 KLIIADARIIDESKLSTDSVQILNTVELKNVKNGKKMKYTIVSESEADLRKGKIAVSTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G T E++ + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMITLEVVDI 152 >gi|239905833|ref|YP_002952572.1| transcription elongation factor GreA [Desulfovibrio magneticus RS-1] gi|259647640|sp|C4XLU8|GREA_DESMR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|239795697|dbj|BAH74686.1| transcription elongation factor GreA [Desulfovibrio magneticus RS-1] Length = 164 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP++ +GF + + R ++ERP +I AI EAR GDL ENA Y+AA+E Q + E Sbjct: 1 MESIPISVEGFRR-LERELERLKKERPGVILAIKEAREEGDLRENAGYEAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ ++R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINYIESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ AL+GK +GD I V+AP G+ YEI+ + + Sbjct: 120 LLSPVGLALLGKFVGDEIVVDAPRGKINYEIVSIAF 155 >gi|118586750|ref|ZP_01544187.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163] gi|118432838|gb|EAV39567.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163] Length = 169 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q EGR+ + Sbjct: 15 PMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAFVEGRVKQ 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG +S SP Sbjct: 75 LQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSP 134 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155 + +AL+ + GD + + P T EIL V Sbjct: 135 MGKALLDHKTGDKVEIPLPENHSVTVEILHV 165 >gi|91216953|ref|ZP_01253916.1| transcription elongation factor greA [Psychroflexus torquis ATCC 700755] gi|91184824|gb|EAS71204.1| transcription elongation factor greA [Psychroflexus torquis ATCC 700755] Length = 158 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 90/148 (60%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ E + ERP+ + I++AR GDLSENAEY AAKE Q + E R+A+LE Sbjct: 8 TEEGLKKLRAEFEQLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRLAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VID S + ++ + V L + Y++V EAD+++G +S+ SPI Sbjct: 68 QVVANARVIDESQLDTSKVLIHSKVRLKNVKMNQEMTYKLVAQSEADLKAGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GKE GD + P G+ T+EIL+V Sbjct: 128 KGLLGKEAGDTAEIEVPSGKITFEILEV 155 >gi|326803433|ref|YP_004321251.1| transcription elongation factor GreA [Aerococcus urinae ACS-120-V-Col10a] gi|326651692|gb|AEA01875.1| transcription elongation factor GreA [Aerococcus urinae ACS-120-V-Col10a] Length = 159 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 96/151 (63%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G ++++ EL + +RP +I I AR++GDLSEN+EY++AK Q++ E ++A Sbjct: 6 FPMTVEGKERLEAELEDLKLNKRPEVISRIKVARSFGDLSENSEYESAKNEQSILESQIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN+I AE++D + D ++ G V E G+++ Y+IVG EAD G +S S Sbjct: 66 KIENMIRYAEIVDPDALGKDTVSIGKRVKFQELPDGEEEEYEIVGKAEADPLGGKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA ALIGK++GD + + PG + IL V Sbjct: 126 PIANALIGKKVGDEVEIETPGEAFSVRILAV 156 >gi|331701536|ref|YP_004398495.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] gi|329128879|gb|AEB73432.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 95/153 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D P+T+ G DK++ EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R Sbjct: 4 DTYPMTADGRDKLKAELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A++ID + D + G V+ E D + YQIVG EAD SG +S Sbjct: 64 ITTIEHMLQYAQIIDSNDSDKDEVTVGKKVTFQELPDEDPETYQIVGAAEADPMSGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ LIG L + +++ P G +I +V Sbjct: 124 DSPIAKGLIGHRLNEEVNIPIPAGTMKVKITKV 156 >gi|289579209|ref|YP_003477836.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus Ab9] gi|297545389|ref|YP_003677691.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528922|gb|ADD03274.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus Ab9] gi|296843164|gb|ADH61680.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 157 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +AL+GK++GD++SV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIINLKILEI 155 >gi|42783507|ref|NP_980754.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987] gi|206975946|ref|ZP_03236856.1| transcription elongation factor GreA [Bacillus cereus H3081.97] gi|217961869|ref|YP_002340439.1| transcription elongation factor GreA [Bacillus cereus AH187] gi|222097822|ref|YP_002531879.1| transcription elongation factor grea [Bacillus cereus Q1] gi|81409080|sp|Q730F5|GREA_BACC1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|226737009|sp|B7HQD7|GREA_BACC7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799547|sp|B9IYE4|GREA_BACCQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|42739436|gb|AAS43362.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987] gi|206745698|gb|EDZ57095.1| transcription elongation factor GreA [Bacillus cereus H3081.97] gi|217066147|gb|ACJ80397.1| transcription elongation factor GreA [Bacillus cereus AH187] gi|221241880|gb|ACM14590.1| transcription elongation factor GreA [Bacillus cereus Q1] Length = 158 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157 >gi|327402704|ref|YP_004343542.1| transcription elongation factor GreA [Fluviicola taffensis DSM 16823] gi|327318212|gb|AEA42704.1| transcription elongation factor GreA [Fluviicola taffensis DSM 16823] Length = 157 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 96/155 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D T +G K++ EL + +RPRI + I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSDFAYYTEEGLKKLKDELHEMKTVQRPRISEQIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++++++ ++++A +ID S M ++ + V + N+G + Y IV + EAD++ + Sbjct: 61 MKISKMDALLSKARIIDNSIMDNSKVLILSCVKIKNVNNGMEMEYTIVAESEADLKLKKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SPI + L+GK++GD+ V P G +E++ + Sbjct: 121 SIDSPIGKGLLGKKVGDVADVQTPNGIVKFEVMDI 155 >gi|295396925|ref|ZP_06807049.1| transcription elongation factor GreA [Aerococcus viridans ATCC 11563] gi|294974859|gb|EFG50562.1| transcription elongation factor GreA [Aerococcus viridans ATCC 11563] Length = 159 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 97/150 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +KIQQ+L + +R I++ I AR+YGDLSEN+EY+AAK+ Q EG++ + Sbjct: 7 PMTQEGLEKIQQDLDELKIVKRKEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQK 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A++ID + + ++ G V+ +E GD++ Y IVG EAD G +S SP Sbjct: 67 LEKMVRYAKIIDPNEIDEGIVSLGRKVTFIELPDGDEEVYSIVGRAEADPLDGKISNESP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+ALIGK + D +++ PGG+ +I V Sbjct: 127 IAQALIGKGVNDEVTIETPGGDMVVKITSV 156 >gi|229098851|ref|ZP_04229787.1| Transcription elongation factor greA [Bacillus cereus Rock3-29] gi|229105013|ref|ZP_04235667.1| Transcription elongation factor greA [Bacillus cereus Rock3-28] gi|229117876|ref|ZP_04247238.1| Transcription elongation factor greA [Bacillus cereus Rock1-3] gi|228665533|gb|EEL21013.1| Transcription elongation factor greA [Bacillus cereus Rock1-3] gi|228678390|gb|EEL32613.1| Transcription elongation factor greA [Bacillus cereus Rock3-28] gi|228684524|gb|EEL38466.1| Transcription elongation factor greA [Bacillus cereus Rock3-29] Length = 182 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 95/150 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 32 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 91 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV+ E +GD++ Y IVG EAD G +S SP Sbjct: 92 LENMIRNAVIIEDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 152 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 181 >gi|229141116|ref|ZP_04269658.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26] gi|229198506|ref|ZP_04325210.1| Transcription elongation factor greA [Bacillus cereus m1293] gi|228585009|gb|EEK43123.1| Transcription elongation factor greA [Bacillus cereus m1293] gi|228642394|gb|EEK98683.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26] gi|324328283|gb|ADY23543.1| transcription elongation factor GreA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 175 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174 >gi|167036744|ref|YP_001664322.1| transcription elongation factor GreA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039463|ref|YP_001662448.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514] gi|256751867|ref|ZP_05492739.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus CCSD1] gi|300915431|ref|ZP_07132744.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561] gi|307266258|ref|ZP_07547799.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307725211|ref|YP_003904962.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513] gi|320115167|ref|YP_004185326.1| transcription elongation factor GreA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326391992|ref|ZP_08213492.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus JW 200] gi|238687609|sp|B0K5B9|GREA_THEPX RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238687705|sp|B0KCE3|GREA_THEP3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166853703|gb|ABY92112.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514] gi|166855578|gb|ABY93986.1| transcription elongation factor GreA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749274|gb|EEU62306.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus CCSD1] gi|300888491|gb|EFK83640.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561] gi|306918708|gb|EFN48941.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307582272|gb|ADN55671.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513] gi|319928258|gb|ADV78943.1| transcription elongation factor GreA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325991960|gb|EGD50452.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus JW 200] Length = 157 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +AL+GK++GD++SV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIIKLKILEI 155 >gi|149370905|ref|ZP_01890500.1| transcription elongation factor [unidentified eubacterium SCB49] gi|149355691|gb|EDM44249.1| transcription elongation factor [unidentified eubacterium SCB49] Length = 158 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 91/148 (61%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +++EL + ERP AI+EAR GDLSENAEY AAKE Q + E R+++LE Sbjct: 8 TLEGLKSLKEELNQLKDVERPAASNAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I+ A VID S + ++ +TV + +G Y++V E+D+++G +S+ SPI Sbjct: 68 AIVANARVIDESQLDTSKVLIHSTVKIKNATNGATMTYKLVAQSESDLKTGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD ++ P G +EI+++ Sbjct: 128 KGLLGKTVGDTAAIQVPSGTMNFEIVEI 155 >gi|194017086|ref|ZP_03055698.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Bacillus pumilus ATCC 7061] gi|194010954|gb|EDW20524.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Bacillus pumilus ATCC 7061] Length = 157 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K+++EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTEEGKRKLEEELEHLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+N+I A++I+ S + ++ G TV+ VE G++++Y IVG EAD G +S S Sbjct: 67 TLDNMIRNAKIIEDEGNS-NIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+GK++ D ++V PGGE +I+++ Sbjct: 126 PIAKSLLGKQVDDKVTVQTPGGEMFVQIVKI 156 >gi|78188473|ref|YP_378811.1| transcription elongation factor GreA [Chlorobium chlorochromatii CaD3] gi|123770883|sp|Q3ATA7|GREA_CHLCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|78170672|gb|ABB27768.1| GreA/GreB family elongation factor [Chlorobium chlorochromatii CaD3] Length = 160 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T+ G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MNDRIYLTNDGYNRLKEELYVLVHQTRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 R+ +LE+ ++ A ++D + D++ +V L ++ D+ Y +V +EAD +G Sbjct: 61 ARIGDLESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ R+LIGK +G +++ P GE YEIL++ Sbjct: 121 ISVRSPVGRSLIGKTVGAKVTIVVPKGELHYEILEIF 157 >gi|259503587|ref|ZP_05746489.1| transcription elongation factor GreA [Lactobacillus antri DSM 16041] gi|259168460|gb|EEW52955.1| transcription elongation factor GreA [Lactobacillus antri DSM 16041] Length = 158 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 96/151 (63%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A Sbjct: 7 FPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D +G +S S Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLNGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++G+ + + P G +IL V Sbjct: 127 PMAKGLLGHKIGEEVEIEIPNGTMKVKILDV 157 >gi|229088223|ref|ZP_04220162.1| Transcription elongation factor greA [Bacillus cereus Rock3-44] gi|228695096|gb|EEL48133.1| Transcription elongation factor greA [Bacillus cereus Rock3-44] Length = 161 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTLEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160 >gi|325955129|ref|YP_004238789.1| transcription elongation factor GreA [Weeksella virosa DSM 16922] gi|323437747|gb|ADX68211.1| transcription elongation factor GreA [Weeksella virosa DSM 16922] Length = 159 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++L Sbjct: 7 VTKEGLEKLRAELHELETYERPKISQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISKL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A +ID S + +I+ +TV + + S + +Y +V + EAD++ +S+++PI Sbjct: 67 QESIANARLIDESKLDATKISILSTVRIRNQVSKQELSYTLVPETEADLKKARISVNTPI 126 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 A+ L+GK +GDI + P G+ T+E+L + Sbjct: 127 AKGLLGKSVGDIAEIELPNGQTLTFEVLSI 156 >gi|53715604|ref|YP_101596.1| transcription elongation factor GreA [Bacteroides fragilis YCH46] gi|60683548|ref|YP_213692.1| putative transcription elongation factor [Bacteroides fragilis NCTC 9343] gi|253566584|ref|ZP_04844037.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5] gi|265767453|ref|ZP_06095119.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16] gi|52218469|dbj|BAD51062.1| transcription elongation factor GreA [Bacteroides fragilis YCH46] gi|60494982|emb|CAH09800.1| putative transcription elongation factor [Bacteroides fragilis NCTC 9343] gi|251944756|gb|EES85231.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5] gi|263252758|gb|EEZ24270.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16] gi|301165062|emb|CBW24630.1| putative transcription elongation factor [Bacteroides fragilis 638R] Length = 154 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+PI Sbjct: 64 KAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + E++ + + Sbjct: 124 AQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154 >gi|154490393|ref|ZP_02030654.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC 43184] gi|154089004|gb|EDN88048.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC 43184] Length = 156 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++++L Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLSQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I+ A +ID + + D + V + + Y +V D EA+++ G +++S+PI Sbjct: 66 KGLISNARLIDETRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GDI+ + P G ++EI+ + Sbjct: 126 AQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154 >gi|253572564|ref|ZP_04849966.1| transcription elongation factor greA [Bacteroides sp. 1_1_6] gi|298387790|ref|ZP_06997340.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14] gi|251837979|gb|EES66068.1| transcription elongation factor greA [Bacteroides sp. 1_1_6] gi|298259395|gb|EFI02269.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14] Length = 173 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 23 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 82 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 83 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 142 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GDI + P G+ E++ + Sbjct: 143 AQGLLGKKVGDIAEITVPQGKIALEVVNI 171 >gi|29347975|ref|NP_811478.1| transcription elongation factor greA [Bacteroides thetaiotaomicron VPI-5482] gi|29339877|gb|AAO77672.1| transcription elongation factor greA [Bacteroides thetaiotaomicron VPI-5482] Length = 154 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GDI + P G+ E++ + Sbjct: 124 AQGLLGKKVGDIAEITVPQGKIALEVVNI 152 >gi|170016629|ref|YP_001727548.1| transcription elongation factor [Leuconostoc citreum KM20] gi|238688945|sp|B1MX52|GREA_LEUCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169803486|gb|ACA82104.1| Transcription elongation factor [Leuconostoc citreum KM20] Length = 160 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTAEGRDKLQAELEDLITRQRPEITNRIQIARSYGDLSENSEYQSAKDEQAFVEGRIL 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G +S S Sbjct: 67 TLKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155 +A AL+ K++GD +SV P GE EIL+V Sbjct: 127 AMAVALLDKKVGDKVSVPLPSGESIDVEILKV 158 >gi|120437373|ref|YP_863059.1| transcription elongation factor GreA [Gramella forsetii KT0803] gi|166200665|sp|A0M5U7|GREA_GRAFK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|117579523|emb|CAL67992.1| transcription elongation factor GreA [Gramella forsetii KT0803] Length = 158 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERP+ +AI EAR GDLSENAEY AAKE Q L E +++++E Sbjct: 8 TPEGLKKLRDELNHLKDVERPKASEAIGEARDKGDLSENAEYDAAKEAQGLLEMKISKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VID S + ++ + V + + +G + Y++V EAD++SG +S+ SPI Sbjct: 68 EVVANARVIDESQLDTSKVLVHSHVKIKNQTNGAEMTYKLVAQSEADLKSGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK++GD + P G ++++++ W Sbjct: 128 KGLLGKKVGDTAEIEVPNGTVKFDVIEI-W 156 >gi|323141548|ref|ZP_08076433.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT 12067] gi|322413960|gb|EFY04794.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT 12067] Length = 158 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL R+ E R I++ + EARA GDLSEN+EY AKE Q NEGR+ EL Sbjct: 8 LTAEGLRKLKEELAQRKGEIREEIVERLKEARAQGDLSENSEYDQAKEDQGKNEGRILEL 67 Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E +I A +ID S + + ++ G+TV L + +GD++ Y IVG EAD +S SP Sbjct: 68 EQMIKTATIIDDSASKAAGIVSLGSTVLLKDVETGDEETYTIVGTTEADPFENRISNESP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + A++G ++ D++ P GE +YEI+++ Sbjct: 128 VGAAILGCKVHDVVVTKTPVGELSYEIVEI 157 >gi|212550757|ref|YP_002309074.1| transcription elongation factor GreA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548995|dbj|BAG83663.1| transcription elongation factor GreA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 156 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 96/149 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+DK+ +E+ + + EERP IIK I+EAR GDLSEN EY AA+E Q++ E ++ +L Sbjct: 6 MTKGGYDKLLEEIVYLESEERPSIIKQIAEAREKGDLSENVEYNAAREAQSILELKITQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++ +ID S + + I V+L +G Y +V + E D+++G +SI++PI Sbjct: 66 KSLVANTRLIDESHIQTNSIQILNKVTLRNIKNGQTTVYTLVSEAETDLKAGKISINTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ LIGK++G+I + P G +EIL + Sbjct: 126 SKGLIGKKVGEIAEIKTPSGIIYFEILSI 154 >gi|320547393|ref|ZP_08041681.1| transcription elongation factor GreA [Streptococcus equinus ATCC 9812] gi|320447938|gb|EFW88693.1| transcription elongation factor GreA [Streptococcus equinus ATCC 9812] Length = 178 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 86/129 (66%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D + Sbjct: 46 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQIIETKIRYAEIIDSDAVAKDEV 105 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E ++ DK Y IVG AD+ +G +S SPIA+ALIGK+ GDI+++ +P G Sbjct: 106 AIGKTVTVQEVSTTDKDVYHIVGAAGADIFAGRISNESPIAQALIGKKTGDIVTIESPAG 165 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 166 NYDVEIISV 174 >gi|296125308|ref|YP_003632560.1| transcription elongation factor GreA [Brachyspira murdochii DSM 12563] gi|296017124|gb|ADG70361.1| transcription elongation factor GreA [Brachyspira murdochii DSM 12563] Length = 154 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 5/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 P+T +G+DK++ +L + E P II +EAR GDL ENAEY AAKE Q L ++ Sbjct: 4 PITKEGYDKVKAKLAELKAEFETLPAII---AEAREKGDLKENAEYHAAKEKQGLLNAQI 60 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++LE + E+ID S++ + + FG V + +KN Y+IVG+ EAD+ ++I Sbjct: 61 SKLEGDLAGCEIIDPSSLDKNTVTFGKRVKVKDKNRNAVFEYRIVGELEADMSKNEITIV 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +PIA+ L+ K++GD++++ P G+K EIL++ Sbjct: 121 TPIAKGLLAKKVGDVVTIKVPAGDKVLEILEI 152 >gi|332686024|ref|YP_004455798.1| transcription elongation factor GreA [Melissococcus plutonius ATCC 35311] gi|332370033|dbj|BAK20989.1| transcription elongation factor GreA [Melissococcus plutonius ATCC 35311] Length = 157 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVFPMTQEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I A++ID + D I+ G TV E G+++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAQIIDNDGVDEDEISIGKTVVFTELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK LG+ + + PGG+ ++++V Sbjct: 121 ISNDSPIAQALIGKHLGEEVIIETPGGDMKVKVIRV 156 >gi|154686872|ref|YP_001422033.1| transcription elongation factor GreA [Bacillus amyloliquefaciens FZB42] gi|308174431|ref|YP_003921136.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7] gi|166200649|sp|A7Z726|GREA_BACA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|154352723|gb|ABS74802.1| GreA [Bacillus amyloliquefaciens FZB42] gi|307607295|emb|CBI43666.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7] Length = 157 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTHEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+G+++ + ++V PGGE +I+++ Sbjct: 126 PIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156 >gi|228993117|ref|ZP_04153039.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM 12442] gi|229006713|ref|ZP_04164347.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4] gi|228754574|gb|EEM03985.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4] gi|228766576|gb|EEM15217.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM 12442] Length = 161 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 93/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 11 PMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP Sbjct: 71 LENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160 >gi|228999165|ref|ZP_04158747.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17] gi|228760782|gb|EEM09746.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17] Length = 158 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 93/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 8 PMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP Sbjct: 68 LENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157 >gi|255038560|ref|YP_003089181.1| transcription elongation factor GreA [Dyadobacter fermentans DSM 18053] gi|254951316|gb|ACT96016.1| transcription elongation factor GreA [Dyadobacter fermentans DSM 18053] Length = 160 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +K++ EL + + R I + I+EAR GDLSENAEY AAK+ Q ++E ++A+LE Sbjct: 8 TEEGLNKLRNELNEMKTKGRTEIARQIAEARDKGDLSENAEYDAAKDAQGMHEMKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I++ A VID S+M +++ + V + + +G + Y +V ++EAD+++G +S+ SPI Sbjct: 68 EILSNARVIDESSMDTSQVSVLSKVKIKNRKNGMEVTYTLVSEEEADLKAGKISVGSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++G+ + P G +E+L + Sbjct: 128 KGLLGKKVGETTEIKVPAGMMEFEVLDI 155 >gi|329956657|ref|ZP_08297230.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056] gi|328524029|gb|EGF51105.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056] Length = 154 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L Sbjct: 4 MSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMINLEVVNISF 154 >gi|225026969|ref|ZP_03716161.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353] gi|224955705|gb|EEG36914.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353] Length = 160 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 92/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G ++ EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTSQGMQALEDELQDLKVVKRKEIAQKIKEAREQGDLSENAEYDAAKDEQRSMEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E II AEVID S D ++ G+TV ++ ++ Y+IVG E+D+ GL+S SP+ Sbjct: 69 EKIIKNAEVIDESAYDKDTVSIGSTVKFYDEEFDEELEYRIVGSTESDILKGLISNESPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + LIG ++G+ + V +P G Y+IL + Sbjct: 129 GKGLIGAKIGETVQVESPDGFSRYKILGI 157 >gi|163942129|ref|YP_001647013.1| transcription elongation factor GreA [Bacillus weihenstephanensis KBAB4] gi|229135202|ref|ZP_04264001.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196] gi|163864326|gb|ABY45385.1| transcription elongation factor GreA [Bacillus weihenstephanensis KBAB4] gi|228648244|gb|EEL04280.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196] Length = 175 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 94/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIIEDNGEESTVVTLGKTVTFKELPGGDEEAYIIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174 >gi|193214258|ref|YP_001995457.1| transcription elongation factor GreA [Chloroherpeton thalassium ATCC 35110] gi|238692700|sp|B3QV56|GREA_CHLT3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193087735|gb|ACF13010.1| transcription elongation factor GreA [Chloroherpeton thalassium ATCC 35110] Length = 158 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 99/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK +T G++K++ EL + R ++++ I+EA+++GDLSENAEY+AAKE Q E Sbjct: 1 MSDKTYLTKGGYNKLKDELDDLKTNVRQQVLEKITEAKSHGDLSENAEYEAAKEEQAQVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE +++ A ++D + D++ TV L + + ++ Y +V +EAD ++G + Sbjct: 61 SRISTLERVLSTATILDEKDIKTDKVYILTTVLLKDLDRDEEVEYTLVSSEEADSENGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI + L+GK +G+I+ + P G YE+L + Sbjct: 121 SVKSPIGKNLLGKSVGEIVEIKVPKGIMRYEVLNI 155 >gi|288906006|ref|YP_003431228.1| transcription elongation factor [Streptococcus gallolyticus UCN34] gi|306832025|ref|ZP_07465180.1| transcription elongation factor GreA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834163|ref|ZP_07467283.1| transcription elongation factor GreA [Streptococcus bovis ATCC 700338] gi|325978973|ref|YP_004288689.1| transcription elongation factor greA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732732|emb|CBI14306.1| transcription elongation factor [Streptococcus gallolyticus UCN34] gi|304423736|gb|EFM26882.1| transcription elongation factor GreA [Streptococcus bovis ATCC 700338] gi|304425951|gb|EFM29068.1| transcription elongation factor GreA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178901|emb|CBZ48945.1| Transcription elongation factor greA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 160 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 85/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQILETKIRYAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI+++ +P G Sbjct: 88 AIGKTVTVEEVGTTDKDVYHIVGAAGADIFSGRISNESPIAQALIGKKTGDIVTIESPAG 147 Query: 147 EKTYEILQV 155 +I+ V Sbjct: 148 SYDVKIVSV 156 >gi|326693573|ref|ZP_08230578.1| transcription elongation factor greA [Leuconostoc argentinum KCTC 3773] Length = 160 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T++G +K+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTAEGREKLQAELEDLISNQRPEITNRIQIARSYGDLSENSEYQSAKDEQAFVEGRIL 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G +S S Sbjct: 67 TLKKMIENAEIIDPNATASDEVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155 +A AL+GK++GD ++V P G+ EIL+V Sbjct: 127 AMAVALLGKKVGDKVAVPLPSGDSIEVEILKV 158 >gi|328554350|gb|AEB24842.1| transcription elongation factor GreA [Bacillus amyloliquefaciens TA208] gi|328912754|gb|AEB64350.1| Transcription elongation factor greA [Bacillus amyloliquefaciens LL3] Length = 157 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTQEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEGKISNDS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+G+++ + ++V PGGE +I+++ Sbjct: 126 PIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156 >gi|325285915|ref|YP_004261705.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489] gi|324321369|gb|ADY28834.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489] Length = 158 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/148 (39%), Positives = 96/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++++LE Sbjct: 8 TAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELKISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I+ A +ID S + ++ +TV L +++G + Y +V + EAD+++G +S++SPI Sbjct: 68 EIVAGARIIDESQLDTSKVLVLSTVKLKNQSNGMEMKYTLVAESEADLKTGKISVNSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD + P G+ IL++ Sbjct: 128 KGLLGKSVGDEAEIAVPNGKIKLTILEI 155 >gi|300726104|ref|ZP_07059561.1| transcription elongation factor GreA [Prevotella bryantii B14] gi|299776574|gb|EFI73127.1| transcription elongation factor GreA [Prevotella bryantii B14] Length = 154 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 85/140 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + E PR+ +AISEAR GDLSEN EY AAK Q GR+ Sbjct: 4 MSQEGYDKLVAELQHLTKVELPRVTEAISEARDKGDLSENFEYHAAKREQGRLLGRIRFK 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +N++ A VID S +S D + + V L + NY IV EA ++ G +SI SPI Sbjct: 64 QNVLAHARVIDSSRLSADNVQLLSKVKLTNTGNNASMNYTIVSPHEASLKEGKISIKSPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+ K++GD++ V P G Sbjct: 124 AQALLNKKVGDVVEVRVPAG 143 >gi|34541325|ref|NP_905804.1| transcription elongation factor GreA [Porphyromonas gingivalis W83] gi|188994287|ref|YP_001928539.1| putative transcription elongation factor [Porphyromonas gingivalis ATCC 33277] gi|34397641|gb|AAQ66703.1| transcription elongation factor GreA [Porphyromonas gingivalis W83] gi|188593967|dbj|BAG32942.1| putative transcription elongation factor [Porphyromonas gingivalis ATCC 33277] Length = 156 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 96/149 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DKI EL + +RP I + I+EAR GDLSENAEY AAKE Q + E ++A+L Sbjct: 6 ITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILETKIAQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A +ID S +S + + V++ +G Y +V D EA+++ +S+++PI Sbjct: 66 KGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKISVNTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD++S+ P G +EI+ + Sbjct: 126 AQGLMGKKIGDLVSIKVPSGLVEFEIIDI 154 >gi|225619028|ref|YP_002720254.1| transcription elongation factor GreA [Brachyspira hyodysenteriae WA1] gi|225213847|gb|ACN82581.1| transcription elongation factor GreA [Brachyspira hyodysenteriae WA1] Length = 154 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 5/152 (3%) Query: 6 PVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 P+T +G+DK + +L + E P II +EAR GDL ENAEY AAKE Q L ++ Sbjct: 4 PITKEGYDKAKSKLADLKAEFETLPAII---AEAREKGDLKENAEYHAAKEKQGLLNAQI 60 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++LE+ + E+ID + + D + FG V + +K+ Y+IVG+ EAD+ ++I Sbjct: 61 SKLESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIV 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +PIA+ L+GK++GD++++ P G+K EIL++ Sbjct: 121 TPIAKGLLGKKIGDVVTIKVPAGDKVLEILEI 152 >gi|332982218|ref|YP_004463659.1| transcription elongation factor GreA [Mahella australiensis 50-1 BON] gi|332699896|gb|AEE96837.1| transcription elongation factor GreA [Mahella australiensis 50-1 BON] Length = 158 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +K+++EL + + +R I I +A A+GDLSENAEY AK Q EGR+ L Sbjct: 8 LTVEGIEKLEKELEYLKTVKRREIAAKIKQALAFGDLSENAEYDEAKNEQAFVEGRIVTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A+VID ++ D++ G+TV L + GD + Y IVG EAD +S SP+ Sbjct: 68 ENMLRNAKVIDADEITTDKVTIGSTVVLRDIEMGDDEEYVIVGSAEADPFKHKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK GDI+ + P G Y I+ + Sbjct: 128 GKALLGKSKGDIVEITVPDGIIRYSIVDI 156 >gi|319952614|ref|YP_004163881.1| transcription elongation factor grea [Cellulophaga algicola DSM 14237] gi|319421274|gb|ADV48383.1| transcription elongation factor GreA [Cellulophaga algicola DSM 14237] Length = 158 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 97/155 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K T +G K++ EL + ERP+ + I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSNKSYYTPEGLKKLRDELNQLKDIERPKASRDIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE + A +ID S + ++ +TV L +N+G + Y +V + EAD+++G + Sbjct: 61 LRISKLEETYSNARLIDESQLDTSKVLVLSTVKLKNQNNGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S++SPI + L+GK++G+ + P G EIL++ Sbjct: 121 SVNSPIGKGLLGKKVGESAEITIPNGVLKLEILEI 155 >gi|259046507|ref|ZP_05736908.1| transcription elongation factor GreA [Granulicatella adiacens ATCC 49175] gi|259036672|gb|EEW37927.1| transcription elongation factor GreA [Granulicatella adiacens ATCC 49175] Length = 159 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MTEKVFPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR++ LE +I AE+ID + + D ++ G V+ +E GD++ Y IVG EA+ G Sbjct: 61 EGRISTLEKMIRFAEIIDDNNVEKDIVSLGRKVTFIELPDGDEETYTIVGSAEANPIEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ +IGK+L + + + PGGE I+ + Sbjct: 121 ISNDSPIAKGIIGKKLNEEVVIPTPGGEMKIRIIDI 156 >gi|163753412|ref|ZP_02160536.1| transcription elongation factor [Kordia algicida OT-1] gi|161327144|gb|EDP98469.1| transcription elongation factor [Kordia algicida OT-1] Length = 158 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 95/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ER + +AI+EAR GDLSENAEY AAKE Q L E R++++E Sbjct: 8 TAEGLKKLRDELDHLKNVERLKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMRISKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ A +ID S + ++ +TV + +G + Y +V + EAD+ +G +S++SPI Sbjct: 68 AVLSTARIIDESQLDTSKVLVLSTVRIKNTTNGMEMTYTLVAESEADLAAGKISVTSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G+I V P G +E+L++ Sbjct: 128 KGLLGKSVGEIAEVKVPNGIMKFEVLEI 155 >gi|110638033|ref|YP_678241.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC 33406] gi|110280714|gb|ABG58900.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC 33406] Length = 158 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +K++ EL + + R +I I+EAR GDLSENAEY AAK+ Q L E ++++LE Sbjct: 9 TEEGLNKLKNELSHLKTKGRSQIAAQIAEARDKGDLSENAEYDAAKDAQGLLELKISKLE 68 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I++ A ++D ST+ + + V + K +G Y +V ++EAD+++G +S+ SPI Sbjct: 69 EIVSNARLLDESTIDTSKASILTKVKIKNKKTGHIVEYTLVSEEEADLKAGRISLKSPIG 128 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G+E+G+ + V+ P G+ +EIL + Sbjct: 129 KALLGREVGETVLVDVPAGKIEFEILDI 156 >gi|313885264|ref|ZP_07819016.1| transcription elongation factor GreA [Eremococcus coleocola ACS-139-V-Col8] gi|312619955|gb|EFR31392.1| transcription elongation factor GreA [Eremococcus coleocola ACS-139-V-Col8] Length = 159 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 86/129 (66%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R II+ I AR++GDLSEN+EY+AAK+ Q + EGR+A +EN+I AE+ID + D + Sbjct: 28 RKEIIERIKIARSFGDLSENSEYEAAKDEQAMLEGRIATIENMIRFAEIIDDKHVDEDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + G V+ E GD+++Y IVG EAD +S SPIA++LIGK+LG I+S+ +PGG Sbjct: 88 SLGRKVTFKELPDGDEESYIIVGSAEADPMEFKISNDSPIAKSLIGKKLGQIVSIESPGG 147 Query: 147 EKTYEILQV 155 EI + Sbjct: 148 AFDVEITNI 156 >gi|189459948|ref|ZP_03008733.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136] gi|189433321|gb|EDV02306.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136] Length = 202 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 96/151 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q + E ++ +L Sbjct: 52 MSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINQL 111 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 112 KATIGDAKIIDTSKLKADTVQILTRVELKNVKTGMKMAYTIVSETEANLKLGKISVNTPI 171 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GDI + P G+ + E+ + + Sbjct: 172 AQGLLGKKVGDIAEITIPQGKISLEVTGISF 202 >gi|229822854|ref|ZP_04448924.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271] gi|229787667|gb|EEP23781.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271] Length = 159 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 97/150 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + +R II+ I AR+YGDLSEN+EY AAK+ Q EGR++ Sbjct: 7 PMTLEGKAKLEAELEDLKVNKRKEIIERIKIARSYGDLSENSEYDAAKDEQAFVEGRISV 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E +I A++ID ++ D + G TVS +E D+++Y IVG EAD +S SP Sbjct: 67 IEKMIRFAQIIDDRDVADDVVTLGRTVSFIELPGSDEESYTIVGSAEADPLEAKISNDSP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+A+IGK+LGD+++V PGG +I ++ Sbjct: 127 IAKAIIGKKLGDVVTVETPGGSFDLKITKI 156 >gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56'] gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 157 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLN 59 M D +T G ++ +EL + ERPR+++ +++A A GD SENAEY K+L+ ++ Sbjct: 1 MSDPAYITPSGARRLSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREID 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 RM L + +A V+D S GD++ FGATV +E G ++ YQIVG+ E D +G Sbjct: 61 R-RMHYLTKRLEKAVVVDPSEQRGDKVFFGATVE-IEDEDGARRTYQIVGEDEIDSAAGR 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ R+L+GK GD+I+V P GE E++ V + Sbjct: 119 ISWRSPVGRSLLGKRAGDVITVRRPAGEAEMELISVRY 156 >gi|220930922|ref|YP_002507830.1| transcription elongation factor GreA [Halothermothrix orenii H 168] gi|219992232|gb|ACL68835.1| transcription elongation factor GreA [Halothermothrix orenii H 168] Length = 161 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 97/155 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G++K+++EL + +R ++ K I AR +GD+ EN+EY AK Q E Sbjct: 1 MANEVLLTQEGYEKLEKELDYLVNVKRRQVAKRIKVAREFGDIGENSEYDDAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+EN++ A +I ++GD + G TV L ++++ + +Y IVG EAD + + Sbjct: 61 GRIKEIENMLRNARIIKDEEVTGDTVNLGTTVKLKDRSTDEVFSYTIVGSAEADPLNFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A+IG ++GD++ V P G YEIL + Sbjct: 121 SNESPIGKAIIGHKIGDVVKVEVPSGIMEYEILAI 155 >gi|22537752|ref|NP_688603.1| transcription elongation factor GreA [Streptococcus agalactiae 2603V/R] gi|25011701|ref|NP_736096.1| transcription elongation factor GreA [Streptococcus agalactiae NEM316] gi|76787850|ref|YP_330230.1| transcription elongation factor GreA [Streptococcus agalactiae A909] gi|76798458|ref|ZP_00780696.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Streptococcus agalactiae 18RS21] gi|77405807|ref|ZP_00782891.1| transcription elongation factor GreA [Streptococcus agalactiae H36B] gi|77408492|ref|ZP_00785230.1| transcription elongation factor GreA [Streptococcus agalactiae COH1] gi|77411916|ref|ZP_00788247.1| transcription elongation factor GreA [Streptococcus agalactiae CJB111] gi|77414235|ref|ZP_00790397.1| transcription elongation factor GreA [Streptococcus agalactiae 515] gi|81456125|sp|Q8E3U5|GREA_STRA3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81744339|sp|Q8DY80|GREA_STRA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123601405|sp|Q3JZS3|GREA_STRA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|22534643|gb|AAN00476.1|AE014265_5 transcription elongation factor GreA [Streptococcus agalactiae 2603V/R] gi|24413241|emb|CAD47320.1| Unknown [Streptococcus agalactiae NEM316] gi|76562907|gb|ABA45491.1| transcription elongation factor GreA [Streptococcus agalactiae A909] gi|76586192|gb|EAO62712.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Streptococcus agalactiae 18RS21] gi|77159724|gb|EAO70873.1| transcription elongation factor GreA [Streptococcus agalactiae 515] gi|77162013|gb|EAO72993.1| transcription elongation factor GreA [Streptococcus agalactiae CJB111] gi|77172934|gb|EAO76065.1| transcription elongation factor GreA [Streptococcus agalactiae COH1] gi|77175594|gb|EAO78379.1| transcription elongation factor GreA [Streptococcus agalactiae H36B] gi|319745513|gb|EFV97815.1| transcription elongation factor GreA [Streptococcus agalactiae ATCC 13813] Length = 160 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQILETKIRYAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA ALIGK+ GD+ ++ +P G Sbjct: 88 AIGKTVLVQEVGTNDKDTYHIVGAAGADIFSGKISNESPIAHALIGKKTGDLATIESPAG 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 SYQVEIISV 156 >gi|218131388|ref|ZP_03460192.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697] gi|317476400|ref|ZP_07935649.1| transcription elongation factor GreA [Bacteroides eggerthii 1_2_48FAA] gi|217986320|gb|EEC52657.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697] gi|316907426|gb|EFV29131.1| transcription elongation factor GreA [Bacteroides eggerthii 1_2_48FAA] Length = 154 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L Sbjct: 4 MSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154 >gi|87311291|ref|ZP_01093413.1| transcription elongation factor greA [Blastopirellula marina DSM 3645] gi|87286031|gb|EAQ77943.1| transcription elongation factor greA [Blastopirellula marina DSM 3645] Length = 163 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 100/157 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+ P++ KGFDK++ +L + E PRI + I+ AR GDL ENAEY A+E Q + + Sbjct: 4 MADRNPMSRKGFDKLKADLDHLESVEMPRITEKIATAREEGDLKENAEYHGARETQGMIQ 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ +++ ++RA +ID +++ + F AT+++ + + ++ Y +VG+ E D + + Sbjct: 64 AKIHAIKSKLSRAYIIDPASIDQSVVGFFATITVEDLDMDEEDTYTLVGNGEEDFMNNKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+A++L+G ++GD++ + AP G +IL++ + Sbjct: 124 LIDSPMAQSLLGHKVGDVVPIEAPKGTYELKILKIEY 160 >gi|330718836|ref|ZP_08313436.1| transcription elongation factor GreA [Leuconostoc fallax KCTC 3537] Length = 159 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 86/142 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G ++QEL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTLEGKTSLEQELDNLIAVQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + +I AE+ID++ + D ++ G TV+ E + + Y IVG EAD SG +S S Sbjct: 67 TIRKMIENAEIIDVADTASDEVSLGKTVTFKELPDEEAETYTIVGSVEADPLSGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+A ALI ++GD + V P G Sbjct: 127 PMANALINHKVGDTVDVPLPNG 148 >gi|225013112|ref|ZP_03703526.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-2A] gi|225002770|gb|EEG40752.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-2A] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E +A++E Sbjct: 8 TEEGLKKLRAELNHLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMHIAKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 N+++ A +I+ S + ++ +TV + K +G Y +V EAD+++G +S+ SPI Sbjct: 68 NVLSNARIINESELDTSKVLVLSTVEVKNKVNGGSMKYTLVAQSEADLKTGKISVDSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++G+I ++ P G E++ + Sbjct: 128 KGLLGKKVGEIAVISVPNGSIELEVISI 155 >gi|167763703|ref|ZP_02435830.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC 43183] gi|167697819|gb|EDS14398.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC 43183] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L Sbjct: 4 MSEEGYNKLLADLKQLETIERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154 >gi|325299317|ref|YP_004259234.1| transcription elongation factor GreA [Bacteroides salanitronis DSM 18170] gi|324318870|gb|ADY36761.1| transcription elongation factor GreA [Bacteroides salanitronis DSM 18170] Length = 151 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 95/146 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+++ AI+EAR GDLSENAEY AAKE Q + E ++ +L Sbjct: 1 MSEEGYQKLVAELKHLEAVERPKVVAAIAEARDKGDLSENAEYDAAKEAQAMLEMKINQL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 61 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSETEANLKQGKISVNTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+ L+GK++GD+ + P G+ + E+ Sbjct: 121 AQGLLGKKVGDVAEITIPQGKISLEV 146 >gi|20808737|ref|NP_623908.1| transcription elongation factor GreA [Thermoanaerobacter tengcongensis MB4] gi|25452988|sp|Q8R7N0|GREA_THETN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|20517379|gb|AAM25512.1| Transcription elongation factor [Thermoanaerobacter tengcongensis MB4] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 95/155 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D ++ G TV + ++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDEVSIGCTVKVFDETYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +AL+GK++G+ ISV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGETISVEVPAGVIKLKILEI 155 >gi|255693071|ref|ZP_05416746.1| transcription elongation factor GreA [Bacteroides finegoldii DSM 17565] gi|260621111|gb|EEX43982.1| transcription elongation factor GreA [Bacteroides finegoldii DSM 17565] Length = 154 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 96/151 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++G++ + P G+ E++ + + Sbjct: 124 AQGLLGKKVGEVAEITVPQGKIALEVVNISF 154 >gi|94993684|ref|YP_601782.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10750] gi|94547192|gb|ABF37238.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS10750] Length = 176 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 44 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P Sbjct: 104 AIGKTVIVHEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 163 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 164 TYDVEIISV 172 >gi|257885237|ref|ZP_05664890.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,501] gi|257821089|gb|EEV48223.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,501] Length = 159 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156 >gi|237713952|ref|ZP_04544433.1| transcription elongation factor greA [Bacteroides sp. D1] gi|237722892|ref|ZP_04553373.1| transcription elongation factor greA [Bacteroides sp. 2_2_4] gi|262409139|ref|ZP_06085683.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22] gi|294647463|ref|ZP_06725046.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CC 2a] gi|294808933|ref|ZP_06767658.1| putative transcription elongation factor GreA [Bacteroides xylanisolvens SD CC 1b] gi|298482232|ref|ZP_07000419.1| transcription elongation factor GreA [Bacteroides sp. D22] gi|229446108|gb|EEO51899.1| transcription elongation factor greA [Bacteroides sp. D1] gi|229447414|gb|EEO53205.1| transcription elongation factor greA [Bacteroides sp. 2_2_4] gi|262352886|gb|EEZ01982.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22] gi|292637173|gb|EFF55608.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CC 2a] gi|294443868|gb|EFG12610.1| putative transcription elongation factor GreA [Bacteroides xylanisolvens SD CC 1b] gi|295085264|emb|CBK66787.1| transcription elongation factor GreA [Bacteroides xylanisolvens XB1A] gi|298271519|gb|EFI13093.1| transcription elongation factor GreA [Bacteroides sp. D22] Length = 176 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 85 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 86 KATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 145 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G+ E++ + Sbjct: 146 AQGLLGKKVGDVAEITVPQGKIALEVVNI 174 >gi|229013597|ref|ZP_04170728.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048] gi|229062075|ref|ZP_04199400.1| Transcription elongation factor greA [Bacillus cereus AH603] gi|229169123|ref|ZP_04296838.1| Transcription elongation factor greA [Bacillus cereus AH621] gi|228614351|gb|EEK71461.1| Transcription elongation factor greA [Bacillus cereus AH621] gi|228717227|gb|EEL68902.1| Transcription elongation factor greA [Bacillus cereus AH603] gi|228747656|gb|EEL97528.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048] Length = 175 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 93/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP Sbjct: 85 LENMIRNAVIIEDNGEESTVVTLGKTVIFKELPGGDEEAYIIVGSAEADPFEGRISNDSP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA++L+GK++G+ +++ PGGE EI+ V Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174 >gi|257893581|ref|ZP_05673234.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,408] gi|260560508|ref|ZP_05832682.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium C68] gi|261209025|ref|ZP_05923430.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium TC 6] gi|289565163|ref|ZP_06445615.1| transcription elongation factor greA [Enterococcus faecium D344SRF] gi|293553245|ref|ZP_06673882.1| transcription elongation factor GreA [Enterococcus faecium E1039] gi|293563598|ref|ZP_06678044.1| transcription elongation factor GreA [Enterococcus faecium E1162] gi|293569322|ref|ZP_06680620.1| transcription elongation factor GreA [Enterococcus faecium E1071] gi|294615287|ref|ZP_06695163.1| transcription elongation factor GreA [Enterococcus faecium E1636] gi|294619052|ref|ZP_06698547.1| transcription elongation factor GreA [Enterococcus faecium E1679] gi|314939785|ref|ZP_07847005.1| transcription elongation factor GreA [Enterococcus faecium TX0133a04] gi|314942020|ref|ZP_07848880.1| transcription elongation factor GreA [Enterococcus faecium TX0133C] gi|314950014|ref|ZP_07853307.1| transcription elongation factor GreA [Enterococcus faecium TX0082] gi|314953536|ref|ZP_07856448.1| transcription elongation factor GreA [Enterococcus faecium TX0133A] gi|314992151|ref|ZP_07857598.1| transcription elongation factor GreA [Enterococcus faecium TX0133B] gi|314995129|ref|ZP_07860245.1| transcription elongation factor GreA [Enterococcus faecium TX0133a01] gi|257829960|gb|EEV56567.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,408] gi|260073510|gb|EEW61838.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium C68] gi|260077064|gb|EEW64786.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium TC 6] gi|289162984|gb|EFD10832.1| transcription elongation factor greA [Enterococcus faecium D344SRF] gi|291588028|gb|EFF19878.1| transcription elongation factor GreA [Enterococcus faecium E1071] gi|291591845|gb|EFF23478.1| transcription elongation factor GreA [Enterococcus faecium E1636] gi|291594713|gb|EFF26095.1| transcription elongation factor GreA [Enterococcus faecium E1679] gi|291602655|gb|EFF32870.1| transcription elongation factor GreA [Enterococcus faecium E1039] gi|291604448|gb|EFF33936.1| transcription elongation factor GreA [Enterococcus faecium E1162] gi|313590620|gb|EFR69465.1| transcription elongation factor GreA [Enterococcus faecium TX0133a01] gi|313593292|gb|EFR72137.1| transcription elongation factor GreA [Enterococcus faecium TX0133B] gi|313594459|gb|EFR73304.1| transcription elongation factor GreA [Enterococcus faecium TX0133A] gi|313599197|gb|EFR78042.1| transcription elongation factor GreA [Enterococcus faecium TX0133C] gi|313640925|gb|EFS05505.1| transcription elongation factor GreA [Enterococcus faecium TX0133a04] gi|313643661|gb|EFS08241.1| transcription elongation factor GreA [Enterococcus faecium TX0082] Length = 159 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156 >gi|15674504|ref|NP_268678.1| transcription elongation factor GreA [Streptococcus pyogenes M1 GAS] gi|19745512|ref|NP_606648.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS8232] gi|28896516|ref|NP_802866.1| transcription elongation factor GreA [Streptococcus pyogenes SSI-1] gi|50913667|ref|YP_059639.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10394] gi|56808752|ref|ZP_00366470.1| COG0782: Transcription elongation factor [Streptococcus pyogenes M49 591] gi|71902951|ref|YP_279754.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS6180] gi|71910107|ref|YP_281657.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS5005] gi|94987924|ref|YP_596025.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS9429] gi|94989799|ref|YP_597899.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10270] gi|94991808|ref|YP_599907.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS2096] gi|209558851|ref|YP_002285323.1| transcription elongation factor GreA [Streptococcus pyogenes NZ131] gi|306827965|ref|ZP_07461232.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC 10782] gi|13621606|gb|AAK33399.1| putative transcription elongation factor [Streptococcus pyogenes M1 GAS] gi|19747630|gb|AAL97147.1| putative transcription elongation factor [Streptococcus pyogenes MGAS8232] gi|28811770|dbj|BAC64699.1| putative transcription elongation factor [Streptococcus pyogenes SSI-1] gi|50902741|gb|AAT86456.1| Transcription elongation factor [Streptococcus pyogenes MGAS10394] gi|71802046|gb|AAX71399.1| transcription elongation factor [Streptococcus pyogenes MGAS6180] gi|71852889|gb|AAZ50912.1| transcription elongation factor [Streptococcus pyogenes MGAS5005] gi|94541432|gb|ABF31481.1| transcription elongation factor [Streptococcus pyogenes MGAS9429] gi|94543307|gb|ABF33355.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS10270] gi|94545316|gb|ABF35363.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS2096] gi|209540052|gb|ACI60628.1| Transcription elongation factor GreA [Streptococcus pyogenes NZ131] gi|304429884|gb|EFM32926.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC 10782] Length = 176 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 44 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P Sbjct: 104 AIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 163 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 164 TYDVEIISV 172 >gi|302327915|gb|ADL27116.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 155 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 6/155 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNE 60 ++KI T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE L +++ Sbjct: 1 MEKIMFTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDN 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSG 118 M +L++ + RA+VI S D I FGAT++ KN K+ YQ+V +EAD +G Sbjct: 61 IEMPKLQDQLARAQVIAFDANS-DTIKFGATIT--AKNLKTKREIVYQLVSPEEADALNG 117 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 +S SPI AL+GK+ GD + V P G+ +EI+ Sbjct: 118 KISFKSPIGAALMGKKRGDTVEVVTPKGKNQFEII 152 >gi|260583976|ref|ZP_05851724.1| transcription elongation factor GreA [Granulicatella elegans ATCC 700633] gi|260158602|gb|EEW93670.1| transcription elongation factor GreA [Granulicatella elegans ATCC 700633] Length = 159 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MTEKLYPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE +I AE+ID + + D ++ G ++ +E G++++Y IVG EA+ G Sbjct: 61 EGRITTLEKMIRFAEIIDDNNVEKDVVSLGRKITFIELPDGEEESYTIVGSAEANPIEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ +IGK+L D + + PGG+ +I ++ Sbjct: 121 ISNDSPIAKGIIGKKLNDEVVIQTPGGDMKVKITKI 156 >gi|268316677|ref|YP_003290396.1| transcription elongation factor GreA [Rhodothermus marinus DSM 4252] gi|262334211|gb|ACY48008.1| transcription elongation factor GreA [Rhodothermus marinus DSM 4252] Length = 159 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D PV T + K+++EL + +ER RI KAI+EAR +GDLSENAEY AAKE Q Sbjct: 1 MQDPKPVYLTREALQKLKEELHELKTKERARIAKAIAEARGHGDLSENAEYDAAKEAQGR 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++E I A ++D + + + + V + +G ++ + +V QE ++ G Sbjct: 61 LEARIAQIEQTIANARIVDENKIDTSKAYIFSKVRVKNLQTGAEQVFTLVSPQEVNLNEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S++SPI + L+G+ +GD++ V P G+ +IL++ Sbjct: 121 KISVNSPIGKGLLGRSVGDVVEVKVPAGKVKLQILEI 157 >gi|332885551|gb|EGK05797.1| hypothetical protein HMPREF9456_02061 [Dysgonomonas mossii DSM 22836] Length = 156 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 97/149 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E ++A++ Sbjct: 6 MTAEGYKKLKEEINTLETTERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEAKIAQM 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +N++ A +I+ ++ D + V++ + K Y IV + EA+++ +++++PI Sbjct: 66 KNLLANARLINEDSIGTDVVQILNKVTIRNTKNNQKMTYTIVAESEANLKENKMAVNTPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G ++EI+ + Sbjct: 126 AQGLMGKKVGDVAEIKVPSGIMSFEIMDI 154 >gi|88801364|ref|ZP_01116892.1| putative transcription elongation factor [Polaribacter irgensii 23-P] gi|88782022|gb|EAR13199.1| putative transcription elongation factor [Polaribacter irgensii 23-P] Length = 166 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 96/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 + +G K++ EL +Q ERPR+ I++AR GDLSENAEY AAKE Q+ E ++A+L+ Sbjct: 16 SPEGLKKLRDELVQLEQVERPRVTVEIADARDKGDLSENAEYHAAKEEQSHLEFKIAKLK 75 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 N+I+ A ++D S + ++ + V + +G + Y++V D E DV++G +S++SPI Sbjct: 76 NVISGARILDESQLDTSKVLIHSNVVIKNAINGAEFTYRLVADSETDVRNGKLSVNSPIG 135 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++G++ + P G +EI+ + Sbjct: 136 KGLLGKKVGEVAEIQVPSGIMKFEIMAI 163 >gi|307721519|ref|YP_003892659.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] gi|306979612|gb|ADN09647.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] Length = 174 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 97/154 (62%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ +G+DK+ +E ++ + E+P++ A A GD SENA+YQAAKE + R+ Sbjct: 2 KEPMSIEGYDKLIEEFKYLLEVEKPKVAHEKLVAAALGDRSENADYQAAKEKLRFIDKRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I + +ID S ++AFG++V+LV ++ D++ Y I G E++ ++GL+SI Sbjct: 62 FYLNKMIQSSHIIDPSLHEHKQVAFGSSVTLVNIDTEDEEIYTICGVLESEPENGLISIH 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+A++GK+ GD + P K YEI ++ + Sbjct: 122 SPLAKAMLGKKEGDEFKIQLPNALKEYEIQKIKY 155 >gi|299147539|ref|ZP_07040603.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23] gi|298514326|gb|EFI38211.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KATIADAKIIDESKLKTDSVQILSKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G+ E++ + Sbjct: 124 AQGLLGKKVGDVAEITVPQGKIALEVVNI 152 >gi|300214537|gb|ADJ78953.1| Transcription elongation factor [Lactobacillus salivarius CECT 5713] Length = 156 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+ Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA LIG +LGDI+S++ PGG +I+ V Sbjct: 125 PIASGLIGHKLGDIVSIDTPGGTMQVKIIDV 155 >gi|241895036|ref|ZP_04782332.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313] gi|241871754|gb|EER75505.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313] Length = 161 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G KI++EL E R I I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLEGKAKIEEELNTLITETRSEITGRIQLARSFGDLSENSEYASAKDEQAFVEGRIK 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+N++ AE+ID S ++ D +A G V+ E + ++Y IVG EA+ G +S S Sbjct: 67 TLQNMLDNAEIIDSSEIADDEVAVGKKVTFKELPDEEPESYSIVGAVEANPSEGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155 PIA ALIG ++GD +SV P G + EIL V Sbjct: 127 PIAAALIGHKVGDTVSVTLPNGFDMEIEILSV 158 >gi|184155762|ref|YP_001844102.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|227515646|ref|ZP_03945695.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931] gi|260663522|ref|ZP_05864412.1| transcription elongation factor GreA [Lactobacillus fermentum 28-3-CHN] gi|238692987|sp|B2GD90|GREA_LACF3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|183227106|dbj|BAG27622.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|227086076|gb|EEI21388.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931] gi|260552063|gb|EEX25116.1| transcription elongation factor GreA [Lactobacillus fermentum 28-3-CHN] Length = 158 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 94/151 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T+ G K++QEL + RP +I I AR+YGDLSEN+EY++AK+ Q EGR++ Sbjct: 7 FPMTADGKAKLEQELEDLRLVRRPEVINRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++E ++ A +ID ++ D ++ G ++ E + ++Y IVG+ E+D SG +S S Sbjct: 67 QIETMLQYAVIIDNEDVAADEVSMGREITFQELPDEEPESYTIVGESESDPLSGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++GD + + P G +IL V Sbjct: 127 PMAKGLLGHKVGDTVEIEIPNGSMKVKILSV 157 >gi|329117237|ref|ZP_08245954.1| transcription elongation factor GreA [Streptococcus parauberis NCFD 2020] gi|326907642|gb|EGE54556.1| transcription elongation factor GreA [Streptococcus parauberis NCFD 2020] Length = 160 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 81/129 (62%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+I+ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIINSDDVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA ALIGK+ GDI+ + P Sbjct: 88 AIGKTVVVKEVGTNDKDTYHIVGAAGADIFSGKISNESPIAHALIGKKKGDIVKIETPAA 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 TYDVEIISV 156 >gi|251781820|ref|YP_002996122.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390449|dbj|BAH80908.1| transcription elongation factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411166|gb|EFY02074.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126633|gb|ADX23930.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 160 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P Sbjct: 88 AIGKTVVVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 TYDVEIISV 156 >gi|302390918|ref|YP_003826738.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM 5501] gi|302202995|gb|ADL11673.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM 5501] Length = 157 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+ +T +G +K+++EL + + +R + K I +A +GD+SEN+EY AK Q E Sbjct: 1 MAEKVILTKEGLNKLEEELSYLKGTKRREVAKRIKQALEFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+EN++ AEVI+ + + G TV++ + ++ ++ NY+IVG EAD + Sbjct: 61 GRIKEIENMLNNAEVINEDEVETTEVNIGTTVTIRDLDTEEEYNYKIVGTTEADPFENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ AL+G ++G+ + ++AP G+ Y+IL + Sbjct: 121 SNDSPVGNALLGHKIGEEVEIDAPAGKIVYKILAI 155 >gi|21909791|ref|NP_664059.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS315] gi|139474369|ref|YP_001129085.1| transcription elongation factor GreA [Streptococcus pyogenes str. Manfredo] gi|54037221|sp|P64286|GREA_STRP3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54037222|sp|P64287|GREA_STRP8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041331|sp|P64285|GREA_STRP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|73919710|sp|Q5XDQ7|GREA_STRP6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200973|sp|A2RGA4|GREA_STRPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21903976|gb|AAM78862.1| putative transcription elongation factor [Streptococcus pyogenes MGAS315] gi|134272616|emb|CAM30883.1| transcription elongation factor [Streptococcus pyogenes str. Manfredo] Length = 160 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 28 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P Sbjct: 88 AIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 TYDVEIISV 156 >gi|328479717|gb|EGF48865.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC 5462] Length = 134 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 91/133 (68%), Gaps = 2/133 (1%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ E R+ ++ ++ AE+ID ++ Sbjct: 2 KTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTLENRIVTIQTMLRYAEIIDAKAVA 61 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 + ++ G V+ E GD++ Y+IVG EAD +G +S SPIA+ LIG+++GD +++N Sbjct: 62 KNEVSIGKKVTFEE--DGDEETYEIVGAAEADAFNGKISNESPIAQGLIGRKVGDQVTIN 119 Query: 143 APGGEKTYEILQV 155 PGGE T +I +V Sbjct: 120 TPGGEMTVKITKV 132 >gi|23099457|ref|NP_692923.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831] gi|38372370|sp|Q8EPT6|GREA_OCEIH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|22777686|dbj|BAC13958.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831] Length = 158 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 92/141 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G DK+++EL + + + R +++ I AR +GDLSEN+EY AAK+ Q E R+ ++ Sbjct: 9 MTQEGKDKLEEELHYLKTDRRQEVVERIKVARDFGDLSENSEYDAAKDEQAFVEQRITQV 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I+ + + ++ G +VS VE GD++ Y IVG EAD G +S SP+ Sbjct: 69 EKMIRNAVIIENDNDNPNIVSLGKSVSFVELPDGDEETYTIVGSAEADPFEGKISNDSPM 128 Query: 127 ARALIGKELGDIISVNAPGGE 147 A +L+GKE+G+ ++V PGG+ Sbjct: 129 ATSLLGKEIGEEVTVTTPGGD 149 >gi|319900857|ref|YP_004160585.1| transcription elongation factor GreA [Bacteroides helcogenes P 36-108] gi|319415888|gb|ADV42999.1| transcription elongation factor GreA [Bacteroides helcogenes P 36-108] Length = 151 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 94/151 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L Sbjct: 1 MSEEGYKKLMAELKQLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S +S D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 61 KLTIADAKIIDESKLSTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 121 AQGLLGKKVGDVAEIKVPQGMIHLEVMNISF 151 >gi|222152570|ref|YP_002561745.1| transcription elongation factor GreA [Streptococcus uberis 0140J] gi|254799570|sp|B9DTR1|GREA_STRU0 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222113381|emb|CAR41021.1| transcription elongation factor [Streptococcus uberis 0140J] Length = 160 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETQIRFAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI + +P Sbjct: 88 AIGKTVVVQEVGTTDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDIADIVSPAT 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 TYQVEIISV 156 >gi|146299350|ref|YP_001193941.1| transcription elongation factor GreA [Flavobacterium johnsoniae UW101] gi|189042241|sp|A5FJJ8|GREA_FLAJO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146153768|gb|ABQ04622.1| transcription elongation factor GreA [Flavobacterium johnsoniae UW101] Length = 158 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 93/148 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T+ G K++ EL + RP+ + I++AR GDLSENAEY AAKE Q L E R+A+LE Sbjct: 8 TADGLKKLKDELEHLKSVMRPKASQDIADARDKGDLSENAEYDAAKEAQGLLEMRIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + A +ID S + ++ + V + +++G + Y +V + EAD+++G +S++SPI Sbjct: 68 EVYANARLIDESQLDVSKVLVLSNVKIKNQSNGMEMKYTLVAESEADLKTGKISVTSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G+I + P G +EIL++ Sbjct: 128 KGLLGKSVGEIAEITVPNGTLKFEILEI 155 >gi|227890813|ref|ZP_04008618.1| transcription elongation factor [Lactobacillus salivarius ATCC 11741] gi|301301189|ref|ZP_07207345.1| transcription elongation factor GreA [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867222|gb|EEJ74643.1| transcription elongation factor [Lactobacillus salivarius ATCC 11741] gi|300851188|gb|EFK78916.1| transcription elongation factor GreA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 156 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+ Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA LIG +LGD++S++ PGG +I+ V Sbjct: 125 PIASGLIGHKLGDVVSIDTPGGTMQVKIIDV 155 >gi|331268357|ref|YP_004394849.1| transcription elongation factor GreA [Clostridium botulinum BKT015925] gi|329124907|gb|AEB74852.1| transcription elongation factor GreA [Clostridium botulinum BKT015925] Length = 151 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 93/149 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++ Sbjct: 1 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A VID S + D ++ GA V + + + ++ ++ IVG EAD +S SP+ Sbjct: 61 ENMLRNANVIDESEIPKDVVSVGAIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++GDI++V P G +EIL++ Sbjct: 121 GSALIGKKVGDIVNVPVPDGISKFEILEI 149 >gi|311747366|ref|ZP_07721151.1| transcription elongation factor GreA [Algoriphagus sp. PR1] gi|126579084|gb|EAZ83248.1| transcription elongation factor GreA [Algoriphagus sp. PR1] Length = 157 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 95/150 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +++ EL+ + + R I K I+EAR GDLSENAEY AAK+ Q E ++A+LE Sbjct: 8 TEEGLKRLKDELQELKTKGRSDIAKQIAEARDKGDLSENAEYDAAKDAQGHLELKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A V D S M ++ +TV + +G +Y +V ++EAD+++G +S+ SP Sbjct: 68 AVVGNARVFDNSQMDTSKVGILSTVKIKNVKNGMTVSYTLVSEEEADLKAGKISLGSPFG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK++G++ +NAP G +EIL++ + Sbjct: 128 KGLVGKKVGEVAEINAPAGALQFEILEISY 157 >gi|313677277|ref|YP_004055273.1| transcription elongation factor grea [Marivirga tractuosa DSM 4126] gi|312943975|gb|ADR23165.1| transcription elongation factor GreA [Marivirga tractuosa DSM 4126] Length = 157 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 92/148 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K+++EL + ERP+ I+EAR GDLSENAEY AAKE Q L E ++ +LE Sbjct: 8 TEEGLRKMKEELHHLKTVERPKASADIAEARDKGDLSENAEYDAAKEAQGLLEMKINKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VI S + ++ + K +G + Y +V ++EA+++ G +SI SPI Sbjct: 68 TVVANARVIKESDVDTSKVGLLTKAKIKNKKNGMEVTYTMVSEEEANLKEGKISIKSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + ++GK++G+I V+AP G+ +EIL + Sbjct: 128 KGIMGKKVGEIAEVDAPAGKMEFEILDI 155 >gi|163787161|ref|ZP_02181608.1| putative transcription elongation factor [Flavobacteriales bacterium ALC-1] gi|159877049|gb|EDP71106.1| putative transcription elongation factor [Flavobacteriales bacterium ALC-1] Length = 157 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K+++EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E +++++E Sbjct: 8 TAEGLKKLREELSQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMKISKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + A VID S + ++ + V + + +G + Y +V + EAD+ SG +S++SPI Sbjct: 68 ETLAGARVIDESQLDTSKVLALSIVKIKNQMNGMEMTYTLVAESEADLASGKISVNSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD + P G ++IL++ Sbjct: 128 KGLLGKSVGDTAEIQVPNGTMKFDILEI 155 >gi|224537713|ref|ZP_03678252.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus DSM 14838] gi|224520636|gb|EEF89741.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus DSM 14838] Length = 154 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 95/151 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + II A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KTIIADAKIIDESKLKTDSVQILNKVELKNIKNGMKMIYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMVNLEVVNISF 154 >gi|160883671|ref|ZP_02064674.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483] gi|260175216|ref|ZP_05761628.1| transcription elongation factor greA [Bacteroides sp. D2] gi|293373408|ref|ZP_06619763.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CMC 3f] gi|315923447|ref|ZP_07919687.1| transcription elongation factor greA [Bacteroides sp. D2] gi|156111084|gb|EDO12829.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483] gi|292631546|gb|EFF50169.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CMC 3f] gi|313697322|gb|EFS34157.1| transcription elongation factor greA [Bacteroides sp. D2] Length = 176 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 85 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 86 KATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTPI 145 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G+ E++ + Sbjct: 146 AQGLLGKKVGDVAEITVPQGKIALEVVNI 174 >gi|126663046|ref|ZP_01734044.1| transcription elongation factor [Flavobacteria bacterium BAL38] gi|126624704|gb|EAZ95394.1| transcription elongation factor [Flavobacteria bacterium BAL38] Length = 158 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 96/148 (64%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E R++++E Sbjct: 8 TAEGLKKLRDELDQLKSIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMRISKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A +ID S + + +TV + + +G + Y +V + EAD+++G +S++SPI Sbjct: 68 EVVANARLIDESQLDLSKALVLSTVKIKNQANGMEMKYTLVAESEADLKTGKISVTSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G++ + P G +++L++ Sbjct: 128 KGLLGKSVGEVAEIIVPNGVLKFDVLEI 155 >gi|284035974|ref|YP_003385904.1| transcription elongation factor GreA [Spirosoma linguale DSM 74] gi|283815267|gb|ADB37105.1| transcription elongation factor GreA [Spirosoma linguale DSM 74] Length = 157 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 97/148 (65%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G ++++ EL + + R I + I+EAR GDLSENAEY AAK+ Q L+E ++++LE Sbjct: 8 TEEGLNRLKAELVELKTKGRAAIARQIAEARDKGDLSENAEYDAAKDAQGLHELKISKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ A V+D ST+ +++ + V + K SG + Y +V ++EAD+++G +S+ SPI Sbjct: 68 EVLSNARVLDESTIDASQVSVLSKVKIKNKKSGAEMLYILVSEEEADLKTGRISVGSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +GD + P G +E++++ Sbjct: 128 KGLLGKRVGDTAEIKVPAGVLEFEVMEI 155 >gi|189465343|ref|ZP_03014128.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM 17393] gi|189437617|gb|EDV06602.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM 17393] Length = 154 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 92/147 (62%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L+ II Sbjct: 8 GYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKLKTII 67 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 A++ID S + D + V L +G K Y IV + EA+++ G +S+++PIA+ L Sbjct: 68 ADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPIAQGL 127 Query: 131 IGKELGDIISVNAPGGEKTYEILQVLW 157 +GK++G++ + P G E++ + + Sbjct: 128 LGKKVGEVAEIKVPQGMVNLEVMNISF 154 >gi|90961794|ref|YP_535710.1| transcription elongation factor [Lactobacillus salivarius UCC118] gi|90820988|gb|ABD99627.1| Transcription elongation factor [Lactobacillus salivarius UCC118] Length = 156 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+ Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA LIG +LGD++S++ PGG +I+ V Sbjct: 125 PIASGLIGHKLGDVVSIDTPGGTMRVKIIDV 155 >gi|296875962|ref|ZP_06900021.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 15912] gi|296433037|gb|EFH18825.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 15912] Length = 160 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G +S SPI ALIGK+ GD+++V P G Sbjct: 88 AIGKTVTVQEVGETDEEVYSIVGSAGADAFAGKISNESPIGHALIGKKTGDVVTVETPAG 147 Query: 147 EKTYEILQV 155 +IL V Sbjct: 148 SYQVKILNV 156 >gi|312868364|ref|ZP_07728564.1| transcription elongation factor GreA [Streptococcus parasanguinis F0405] gi|322390081|ref|ZP_08063616.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 903] gi|311096109|gb|EFQ54353.1| transcription elongation factor GreA [Streptococcus parasanguinis F0405] gi|321143208|gb|EFX38651.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 903] Length = 160 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G +S SPI ALIGK+ GD+++V P G Sbjct: 88 AIGKTVTVQEVGETDEEVYSIVGSAGADAFAGKISNESPIGHALIGKKTGDVVTVETPAG 147 Query: 147 EKTYEILQV 155 +IL V Sbjct: 148 SYQVKILNV 156 >gi|118444643|ref|YP_877135.1| transcription elongation factor GreA [Clostridium novyi NT] gi|166200657|sp|A0PXN3|GREA_CLONN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118135099|gb|ABK62143.1| transcription elongation factor greA [Clostridium novyi NT] Length = 159 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ +L Sbjct: 9 MTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S +S D ++ G+ V + + + + ++ IVG EAD +S SP+ Sbjct: 69 ENMLRNANVVDESEISLDAVSVGSIVKVKDYDFDEIIDFHIVGSAEADPMENKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++GD+I+V P G +EIL++ Sbjct: 129 GSALIGKKVGDVINVPVPDGISKFEILEI 157 >gi|332652694|ref|ZP_08418439.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] gi|332517840|gb|EGJ47443.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] Length = 157 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 96/155 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + ++Q EL + + + + I EAR++GDLSEN+EY AK Q Sbjct: 1 MAKEYKLTPQRLQELQDELVYLKTVREKEVAELIKEARSFGDLSENSEYDEAKTEQGKLY 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E I++ VID S G+ + G+TV++++K ++ Y+IVG QEAD +G++ Sbjct: 61 SRIAEVEEILSNYVVIDESDDGGNYVRIGSTVTVLDKEFDEELVYKIVGSQEADPMNGVI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP RAL+GK +GD + V+AP G Y++L+V Sbjct: 121 SEDSPFGRALLGKNVGDDVVVDAPAGSVEYKLLKV 155 >gi|227550518|ref|ZP_03980567.1| elongation factor GreA [Enterococcus faecium TX1330] gi|227180419|gb|EEI61391.1| elongation factor GreA [Enterococcus faecium TX1330] Length = 198 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 86/130 (66%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R II+ I AR +GDLSEN+EY++AK+ Q EGR+ +EN+I A++ID + D Sbjct: 66 KRGEIIERIKIARGFGDLSENSEYESAKDEQAFVEGRITTIENMIRFAQIIDNDGVDADE 125 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G TV+ +E G+++ Y IVG EAD SG +S SPIA+ALIGK D +++ PG Sbjct: 126 VSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGKISNDSPIAQALIGKRKNDEVTIATPG 185 Query: 146 GEKTYEILQV 155 G+ +I++V Sbjct: 186 GDMLVKIVKV 195 >gi|222099868|ref|YP_002534436.1| Transcription elongation factor greA [Thermotoga neapolitana DSM 4359] gi|254799574|sp|B9K7Y7|GREA_THENN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221572258|gb|ACM23070.1| Transcription elongation factor greA [Thermotoga neapolitana DSM 4359] Length = 156 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K++QEL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKQELEELKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S GD + G V++ ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSE-EGDEVTLGKWVTIRNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ++L+G+++GDI+ V APGG + Y++++V Sbjct: 120 ADSPLGKSLLGRKVGDIVKVKAPGGVQRYQVVEV 153 >gi|313906158|ref|ZP_07839506.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] gi|313468997|gb|EFR64351.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] Length = 161 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 90/150 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++ EL Q +R I + + EARA GDLSENAEY AAK+ Q E R+ Sbjct: 6 KTIMTYAGLKALESELEDLQVNKRKEIAEKLKEARAQGDLSENAEYDAAKDEQAQIEARI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+ENI+ A+V+ + + G + +++K ++ +QIVG EA+ G +S Sbjct: 66 EEIENILKNADVVVEEEADSNTVNVGCKIKVLDKTYDEELEFQIVGSTEANSLKGKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SP+ RAL+G E+GD++++ P G++ YEIL Sbjct: 126 SPVGRALLGHEIGDVVTIETPAGDEQYEIL 155 >gi|69248024|ref|ZP_00604587.1| Prokaryotic transcription elongation factor GreA [Enterococcus faecium DO] gi|257880194|ref|ZP_05659847.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,230,933] gi|257882995|ref|ZP_05662648.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,502] gi|257888545|ref|ZP_05668198.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,141,733] gi|257891422|ref|ZP_05671075.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,410] gi|257897080|ref|ZP_05676733.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com12] gi|257899019|ref|ZP_05678672.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com15] gi|293377303|ref|ZP_06623507.1| transcription elongation factor GreA [Enterococcus faecium PC4.1] gi|294622139|ref|ZP_06701215.1| transcription elongation factor GreA [Enterococcus faecium U0317] gi|68194592|gb|EAN09082.1| Prokaryotic transcription elongation factor GreA [Enterococcus faecium DO] gi|257814422|gb|EEV43180.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,230,933] gi|257818653|gb|EEV45981.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,502] gi|257824599|gb|EEV51531.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,141,733] gi|257827782|gb|EEV54408.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,410] gi|257833645|gb|EEV60066.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com12] gi|257836931|gb|EEV62005.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com15] gi|291598340|gb|EFF29427.1| transcription elongation factor GreA [Enterococcus faecium U0317] gi|292643995|gb|EFF62101.1| transcription elongation factor GreA [Enterococcus faecium PC4.1] Length = 159 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156 >gi|293572488|ref|ZP_06683467.1| transcription elongation factor GreA [Enterococcus faecium E980] gi|291607405|gb|EFF36748.1| transcription elongation factor GreA [Enterococcus faecium E980] Length = 159 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIVTPGGDMLVKIVKV 156 >gi|254449181|ref|ZP_05062631.1| transcription elongation factor GreB [gamma proteobacterium HTCC5015] gi|198261227|gb|EDY85522.1| transcription elongation factor GreB [gamma proteobacterium HTCC5015] Length = 158 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 91/151 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD++++EL + +EERPR+ +A+SEA A GD SENAEY K+ + R+ L Sbjct: 8 ITREGFDRLEKELNFLWKEERPRVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V L + +SG+ Y+IVG E D + G +S+ SP+ Sbjct: 68 SKRLDELQVVYPSPQQAGKVFFGAWVELEDGDSGEVVKYRIVGPDEFDPEVGAISVDSPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GK L + V P G + + +L V + Sbjct: 128 ARALLGKALNQTVRVETPKGSRHFIVLDVSY 158 >gi|261885949|ref|ZP_06009988.1| transcription elongation factor GreA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 139 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 88/123 (71%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E R+AE Sbjct: 4 PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIENRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+SI++P Sbjct: 64 LSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLISINTP 123 Query: 126 IAR 128 +A+ Sbjct: 124 LAK 126 >gi|168187057|ref|ZP_02621692.1| transcription elongation factor GreA [Clostridium botulinum C str. Eklund] gi|169295044|gb|EDS77177.1| transcription elongation factor GreA [Clostridium botulinum C str. Eklund] Length = 159 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 93/149 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ +L Sbjct: 9 MTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFAEGRIVQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S +S D ++ G+ V + + + ++ IVG EAD +S SP+ Sbjct: 69 ENMLRNANVVDESEISLDTVSVGSIVKVKDYEFDEIIDFHIVGSAEADPMENKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++GD+++V P G +EIL++ Sbjct: 129 GSALIGKKVGDVVNVPVPDGISKFEILEI 157 >gi|225873815|ref|YP_002755274.1| transcription elongation factor GreA [Acidobacterium capsulatum ATCC 51196] gi|225793182|gb|ACO33272.1| transcription elongation factor GreA [Acidobacterium capsulatum ATCC 51196] Length = 165 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 90/145 (62%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+ ++++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ + Sbjct: 8 KLLEDIKQLEHELAHELPAEIKKAAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAEL 67 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +++++ + DR+AFG+TV + + + +K Y++V +E+DV GL+S +SPI RALIGK Sbjct: 68 SLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIGK 127 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 ++GD +V P G + E+L++ I Sbjct: 128 QVGDTATVVTPSGNRELEVLKLTTI 152 >gi|258592300|emb|CBE68609.1| Transcription elongation factor greA (Transcript cleavage factor greA) [NC10 bacterium 'Dutch sediment'] Length = 166 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 87/144 (60%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 D ++QE +E R + K I AR GDL EN EY+ K+ Q + RMA L+ I Sbjct: 7 LDDLRQEFNKLDREFRQDLPKKIQAARELGDLRENGEYETIKDRQGFVKARMAFLQQRIA 66 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 ID+ + DR+A G+TV L++++SG++ Y +V + D G +S++SPI R+LI Sbjct: 67 EISKIDLRQIPKDRVALGSTVHLIDEDSGEETVYTLVFPELMDSARGWISVASPIGRSLI 126 Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 GK+ GD + +N PGG K +E++++ Sbjct: 127 GKQAGDRVVMNTPGGTKAFEMMKL 150 >gi|229918442|ref|YP_002887088.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b] gi|229469871|gb|ACQ71643.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b] Length = 157 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G KI+ EL + R +++ I AR +GDLSENAEY AAKE Q + EGR+A+L Sbjct: 8 MTLDGKAKIEHELNELKTVRRKEVVENIKIARDFGDLSENAEYDAAKEEQAMVEGRIAQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A +I ++ G TV+ + + + Y IVG EAD +G +S SPI Sbjct: 68 EEMLRNAVIIQDDAGDNSVVSIGKTVTFFIQEDNEDETYTIVGGAEADPFTGKISNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+G+ +GD+++V PGG+ EI ++ Sbjct: 128 AKALLGRTIGDVVTVQTPGGDMVVEIKEI 156 >gi|261409956|ref|YP_003246197.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|261286419|gb|ACX68390.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] Length = 158 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 93/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 1 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + G+K YQ+VG EADV + V Sbjct: 61 TRIIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK +GD + V AP G YE+L++ Sbjct: 121 SYESPLGKALMGKAVGDQVHVEAPMGIVKYELLEI 155 >gi|15896445|ref|NP_349794.1| transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|25453001|sp|Q97EB6|GREA_CLOAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|15026268|gb|AAK81134.1|AE007815_4 Transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|325510603|gb|ADZ22239.1| transcription elongation factor GreA [Clostridium acetobutylicum EA 2018] Length = 158 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T KG K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A++EN++ A VID S + D ++ G+ V + + ++ + IVG EAD +S Sbjct: 66 AQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ALIGK++GD I VN P G Y+IL + Sbjct: 126 SPVGSALIGKKVGDEIEVNVPDGVDKYKILAI 157 >gi|262189677|ref|ZP_06048051.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93] gi|262034443|gb|EEY52809.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93] Length = 144 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 95/126 (75%), Gaps = 2/126 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPI 126 S++SP+ Sbjct: 120 SVNSPM 125 >gi|312131392|ref|YP_003998732.1| transcription elongation factor grea [Leadbetterella byssophila DSM 17132] gi|311907938|gb|ADQ18379.1| transcription elongation factor GreA [Leadbetterella byssophila DSM 17132] Length = 156 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G+D ++ +L + + R + KA++EA+ GDLSENAEY AAK+ Q L E +A+LE Sbjct: 7 TQEGYDNLKNKLNDLKTKGRREVSKALAEAKDKGDLSENAEYDAAKDAQALLETEIAKLE 66 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + +A ++D +T+ +++ TV + + Y +V ++EAD++ G +SI+SP A Sbjct: 67 ELFAKARILDENTIDTSKVSLMTTVKIKNLKNKATMKYTLVAEEEADLKQGKISINSPFA 126 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++GD + APGG EIL++ Sbjct: 127 KGLLGKKVGDKADIQAPGGVVEVEILEI 154 >gi|312866104|ref|ZP_07726325.1| transcription elongation factor GreA [Streptococcus downei F0415] gi|311098508|gb|EFQ56731.1| transcription elongation factor GreA [Streptococcus downei F0415] Length = 160 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +I+ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D + Sbjct: 28 RPEVIERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQIIETKIRYAEIIDSDAVASDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + D+ Y IVG ADV +G +S SPIA+ALIGK++GD ++ +P G Sbjct: 88 AIGKTVVVQEVGTKDQDTYSIVGAAGADVFAGKISNESPIAQALIGKKVGDKTTIESPAG 147 Query: 147 EKTYEILQV 155 EI+ V Sbjct: 148 SYDVEIVSV 156 >gi|18311448|ref|NP_563382.1| transcription elongation factor GreA [Clostridium perfringens str. 13] gi|110799156|ref|YP_697154.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110802874|ref|YP_699722.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|168206861|ref|ZP_02632866.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|168211212|ref|ZP_02636837.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|168215146|ref|ZP_02640771.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|168218226|ref|ZP_02643851.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] gi|169343179|ref|ZP_02864200.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|182625990|ref|ZP_02953753.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|25452992|sp|Q8XHL7|GREA_CLOPE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122956482|sp|Q0SQ85|GREA_CLOPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122958663|sp|Q0TMI6|GREA_CLOP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|18146132|dbj|BAB82172.1| transcriptional elongation factor [Clostridium perfringens str. 13] gi|110673803|gb|ABG82790.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110683375|gb|ABG86745.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|169298731|gb|EDS80807.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|170661751|gb|EDT14434.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|170710773|gb|EDT22955.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|170713439|gb|EDT25621.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|177908697|gb|EDT71208.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|182379757|gb|EDT77236.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] Length = 158 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ +L Sbjct: 8 MTYEGVKKLEDELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEGRIIQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S +S D + G+ V +++ + ++ Y IVG EAD + +S SP+ Sbjct: 68 ENMLKNAVVVDESEISTDIVTVGSIVKVMDFDFDEEVEYSIVGSAEADPMNFKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L+GK++GD++ + PGG +E+L + Sbjct: 128 GEGLMGKKVGDVVEIEVPGGTTKFEVLGI 156 >gi|327439572|dbj|BAK15937.1| transcription elongation factor [Solibacillus silvestris StLB046] Length = 161 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G K++ EL + +RP +++ I AR++GDLSEN+EY +AKE Q EGR++ Sbjct: 8 PMTLDGKQKLEDELNTLKTVKRPEVVERIKVARSFGDLSENSEYDSAKEEQGFVEGRISL 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN----YQIVGDQEADVQSGLVS 121 +E ++ R VI + + I+ G TV+ E +G + N Y IVG EAD G +S Sbjct: 68 IEQML-RNAVIITEDETSNTISLGKTVTFDELINGKRANFEESYTIVGSAEADPMEGKIS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+AL+GK + D++ + PGGE IL+V Sbjct: 127 NDSPIAKALMGKHVDDVVKLTTPGGEMEVIILEV 160 >gi|26513900|gb|AAN78348.1| transcription elongation factor GreA [Listonella anguillarum] Length = 127 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 93/128 (72%), Gaps = 2/128 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++EL R + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQFVREELD-RLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG + Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119 Query: 121 SISSPIAR 128 S+SSPIAR Sbjct: 120 SVSSPIAR 127 >gi|253681347|ref|ZP_04862145.1| transcription elongation factor GreA [Clostridium botulinum D str. 1873] gi|253562585|gb|EES92036.1| transcription elongation factor GreA [Clostridium botulinum D str. 1873] Length = 159 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 92/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++ Sbjct: 9 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S + D ++ G+ V + + + ++ ++ IVG EAD +S SP+ Sbjct: 69 ENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++GDI+ V P G +EIL++ Sbjct: 129 GSALIGKKVGDIVDVPVPDGISKFEILEI 157 >gi|261414657|ref|YP_003248340.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371113|gb|ACX73858.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 151 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 6/150 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNEGRMAE 65 T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE L +++ M + Sbjct: 2 FTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPK 61 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSGLVSIS 123 L++ + RA+VI S D I FGAT++ KN K+ YQ+V +EAD +G +S Sbjct: 62 LQDQLARAQVIAFDANS-DTIKFGATIT--AKNLKTKREIVYQLVSPEEADALNGKISFK 118 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SPI AL+GK+ GD + V P G+ +EI+ Sbjct: 119 SPIGAALMGKKRGDTVEVVTPKGKNQFEII 148 >gi|28378269|ref|NP_785161.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|254556476|ref|YP_003062893.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|300767199|ref|ZP_07077111.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180418|ref|YP_003924546.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257515|sp|Q88WQ9|GREA2_LACPL RecName: Full=Transcription elongation factor greA 2; AltName: Full=Transcript cleavage factor greA 2 gi|28271104|emb|CAD64009.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|254045403|gb|ACT62196.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|300495018|gb|EFK30174.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045909|gb|ADN98452.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 160 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 93/150 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K+++EL + +RP II I AR+YGDLSEN+EY++AK Q+L E R+ Sbjct: 8 PMTEEGKVKLEKELEDLRINQRPEIINRIKIARSYGDLSENSEYESAKNEQSLLENRIKT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ AE+ID + ++ G V+ E + ++Y IVG EAD G +S SP Sbjct: 68 VEHMLQYAEIIDSDKIDETEVSVGKIVTFKELPDEEPESYTIVGAAEADPMVGKISNDSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+ LIG + + +++N P G T +IL+V Sbjct: 128 IAKGLIGHHVDEEVAINIPAGTMTVKILKV 157 >gi|317495734|ref|ZP_07954099.1| transcription elongation factor GreA [Gemella moribillum M424] gi|316914187|gb|EFV35668.1| transcription elongation factor GreA [Gemella moribillum M424] Length = 162 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+ Sbjct: 11 MTQEGYDKLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRILEM 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S SP+ Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPNGATETYKIVGSAEANPFEFKISNDSPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 A+AL+GKE+GD++ V+ P G + ++VL + Sbjct: 130 AQALLGKEVGDVVKVSLPTGPEDSMDIKVLEV 161 >gi|323340754|ref|ZP_08081006.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC 25644] gi|323091877|gb|EFZ34497.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 88/129 (68%), Gaps = 1/129 (0%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R II+ I AR++GDLSEN+EY+AAK Q++ EGR+ E+ N++ AE+ID ++ D + Sbjct: 29 RAEIIERIKIARSFGDLSENSEYEAAKNEQSILEGRIKEVTNMLNHAEIIDNGAIAEDEV 88 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV+ E++ + + YQIVG E+D +G +S SPIA+ L+G ++G+ ++V PGG Sbjct: 89 AIGKTVTFQEEDD-EPETYQIVGAAESDPFNGKISNESPIAKGLVGHKVGETVTVETPGG 147 Query: 147 EKTYEILQV 155 + +I+ V Sbjct: 148 DMQVKIISV 156 >gi|24380100|ref|NP_722055.1| transcription elongation factor GreA [Streptococcus mutans UA159] gi|290579921|ref|YP_003484313.1| putative transcription elongation factor [Streptococcus mutans NN2025] gi|81450943|sp|Q8DSP7|GREA_STRMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|24378096|gb|AAN59361.1|AE015001_6 putative transcription elongation factor GreA [Streptococcus mutans UA159] gi|254996820|dbj|BAH87421.1| putative transcription elongation factor [Streptococcus mutans NN2025] Length = 160 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 85/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +I+ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE++D ++ + + Sbjct: 28 RPEVIERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSIETKIRYAEIVDSDAVAKNEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + D+ Y IVG ADV +G +S SPIA+ALIGK+ GD + + +P G Sbjct: 88 AIGKTVIVREVGTNDEDTYSIVGAAGADVFAGKISNESPIAQALIGKKTGDKVMIESPAG 147 Query: 147 EKTYEILQV 155 EI++V Sbjct: 148 SYQVEIVKV 156 >gi|270290410|ref|ZP_06196635.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|270281191|gb|EFA27024.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] Length = 161 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 99/152 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+ Sbjct: 6 RYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSMVESRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG +S Sbjct: 66 NTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSGKISND 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ L+GK++GD++++ PGG+ +IL V Sbjct: 126 SPIAKGLLGKKVGDVVTIATPGGDMKVKILTV 157 >gi|160887890|ref|ZP_02068893.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492] gi|270294851|ref|ZP_06201052.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477839|ref|ZP_07937025.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36] gi|156862576|gb|EDO56007.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492] gi|270274098|gb|EFA19959.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905975|gb|EFV27743.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36] Length = 154 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 90/147 (61%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L+ I Sbjct: 8 GYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNLKLTI 67 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 A++ID S + D + V L +G K Y IV + EA+++ G +S+++PIA+ L Sbjct: 68 ADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTPIAQGL 127 Query: 131 IGKELGDIISVNAPGGEKTYEILQVLW 157 +GK++GDI + P G E++ + + Sbjct: 128 LGKKVGDIAEIKVPQGMINLEVVNISF 154 >gi|332975157|gb|EGK12059.1| transcription elongation factor GreA [Desmospora sp. 8437] Length = 158 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + R + + EA A GDLSENAEY AAKE Q E R+ L Sbjct: 9 LTEEGLAKVKDELELYRTKRRQDVANRLKEAIAQGDLSENAEYDAAKEEQAFVESRIMTL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A++ID T + + ++ GA V++ E GD++ Y IVG E+D SG +S SPI Sbjct: 69 ENMVRNAKIIDQDTQNKNFVSVGAKVTIQELPDGDEETYTIVGSAESDPISGKISNESPI 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 LIGK G+ I V AP G ++I+ + Sbjct: 129 GAELIGKREGETIKVPAPSGTLEFKIISI 157 >gi|304384708|ref|ZP_07367054.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] gi|304328902|gb|EFL96122.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] Length = 161 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 99/152 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+ Sbjct: 6 RYPMTLDGKQKLEEELETLKTETRPQVIERIKIARSFGDLSENSEYESAKDEQSMVESRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG +S Sbjct: 66 NTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSGKISND 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ L+GK++GD++++ PGG+ +IL V Sbjct: 126 SPIAKGLLGKKVGDVVTIATPGGDMKVKILTV 157 >gi|313890846|ref|ZP_07824470.1| transcription elongation factor GreA [Streptococcus pseudoporcinus SPIN 20026] gi|313120744|gb|EFR43859.1| transcription elongation factor GreA [Streptococcus pseudoporcinus SPIN 20026] Length = 160 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 2/126 (1%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + +P Sbjct: 88 AIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDKAQIVSPA- 146 Query: 147 EKTYEI 152 TYE+ Sbjct: 147 -TTYEV 151 >gi|332522954|ref|ZP_08399206.1| transcription elongation factor GreA [Streptococcus porcinus str. Jelinkova 176] gi|332314218|gb|EGJ27203.1| transcription elongation factor GreA [Streptococcus porcinus str. Jelinkova 176] Length = 160 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 2/126 (1%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIIDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + +P Sbjct: 88 AIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDKAQIVSPA- 146 Query: 147 EKTYEI 152 TYE+ Sbjct: 147 -TTYEV 151 >gi|160944698|ref|ZP_02091925.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii M21/2] gi|158443882|gb|EDP20886.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii M21/2] gi|295104346|emb|CBL01890.1| transcription elongation factor GreA [Faecalibacterium prausnitzii SL3/3] Length = 161 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I A +ID S +S D ++ G V++ E + + Y IVG EAD +G + Sbjct: 61 NRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 S SP+ AL+GK +GD V P G+ Y +L + Sbjct: 121 SDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAI 156 >gi|329960362|ref|ZP_08298787.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057] gi|328532800|gb|EGF59582.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057] Length = 154 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 93/151 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L Sbjct: 4 MSEEGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 64 KLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 124 AQGLLGKKVGDVAEIKVPQGVINLEVVNISF 154 >gi|313902255|ref|ZP_07835661.1| transcription elongation factor GreA [Thermaerobacter subterraneus DSM 13965] gi|313467485|gb|EFR62993.1| transcription elongation factor GreA [Thermaerobacter subterraneus DSM 13965] Length = 159 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 97/155 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + + Sbjct: 61 GRIIELEKMLRNARIVNDDEIDPTKVNIGSTVYLKDVDTGEEVQYTIVGSNEADPAALRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL G +GD++ V P G YEI+++ Sbjct: 121 SYQSPVGKALFGHSVGDVVEVKVPAGTLRYEIVRI 155 >gi|297584721|ref|YP_003700501.1| transcription elongation factor GreA [Bacillus selenitireducens MLS10] gi|297143178|gb|ADH99935.1| transcription elongation factor GreA [Bacillus selenitireducens MLS10] Length = 156 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 87/131 (66%), Gaps = 1/131 (0%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 E R +++ I AR++GDLSEN+EY +AKE Q EGR+ +LE +I AE+I+ S Sbjct: 26 ERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGRIQQLETMIRNAEIIEEDKNSS- 84 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 +++ G V+ VE G+++ Y IVG EAD G +S SP+A++LIGKE+GD ++V+ P Sbjct: 85 KVSLGKKVTFVEIPDGEEEEYVIVGRAEADPLDGKISNESPMAQSLIGKEIGDQVTVSTP 144 Query: 145 GGEKTYEILQV 155 GG+ T +I V Sbjct: 145 GGDMTVKITAV 155 >gi|148544438|ref|YP_001271808.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|184153802|ref|YP_001842143.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|194466620|ref|ZP_03072607.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|227363134|ref|ZP_03847269.1| elongation factor GreA [Lactobacillus reuteri MM2-3] gi|227543959|ref|ZP_03974008.1| elongation factor GreA [Lactobacillus reuteri CF48-3A] gi|300909709|ref|ZP_07127170.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112] gi|325682760|ref|ZP_08162276.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A] gi|148531472|gb|ABQ83471.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|183225146|dbj|BAG25663.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|194453656|gb|EDX42553.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|227071852|gb|EEI10140.1| elongation factor GreA [Lactobacillus reuteri MM2-3] gi|227186075|gb|EEI66146.1| elongation factor GreA [Lactobacillus reuteri CF48-3A] gi|300893574|gb|EFK86933.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112] gi|324977110|gb|EGC14061.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A] Length = 158 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 100/151 (66%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A Sbjct: 7 FPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN++ AE+ID + D ++ G T+++ E + + YQIVG+ E+D +G +S S Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+ L+G ++G+++ V P G +I++V Sbjct: 127 PMAKGLLGHKVGEVVEVEVPNGTIKLKIVKV 157 >gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13] Length = 157 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G DK+ QEL + R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 8 PMTQAGKDKLVQELENLKSVRRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITL 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A++I D + G TV+ VE G+++ Y IVG EAD G +S SP Sbjct: 68 LEQMVRNAKIIQ-EDKDTDAVGLGKTVTFVELPDGEEETYTIVGSAEADPFEGNISNESP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +L+GK + D +++ PGGE +I+ V Sbjct: 127 MGSSLMGKRVNDEVTIQTPGGEMNVKIVSV 156 >gi|291534723|emb|CBL07835.1| transcription elongation factor GreA [Roseburia intestinalis M50/1] gi|291540500|emb|CBL13611.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4] Length = 159 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 7 LTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +S SP+ Sbjct: 67 EKILKNAEVVVEEEADLDKVSIGCSVKILDCEFDEELEYKIVGSTEANSLKGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD ++V P GE +Y++L + Sbjct: 127 GKALLGKQVGDTVTVETPAGEFSYKVLSI 155 >gi|255527650|ref|ZP_05394510.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296186915|ref|ZP_06855316.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255508663|gb|EET85043.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296048629|gb|EFG88062.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 160 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K++ EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 7 KYIMTYEGVKKLESELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D S + D ++ G+ V + + + ++ Y IVG EAD + +S Sbjct: 67 IQLENMLKNATIVDESEIPLDVVSVGSIVKVKDYDFDEEVEYNIVGSAEADPMNNKISNE 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ R L+GK++GDII V P G YEIL + Sbjct: 127 SPVGRGLVGKKIGDIIEVQVPDGVSKYEILGI 158 >gi|313115332|ref|ZP_07800807.1| transcription elongation factor GreA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622363|gb|EFQ05843.1| transcription elongation factor GreA [Faecalibacterium cf. prausnitzii KLE1255] Length = 161 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I A +ID S +S D ++ G V+++ + + Y IVG EAD +G + Sbjct: 61 NRITELEQMIKNAVIIDESELSVDNVSVGTHVTILMTGEDENEEYDIVGRTEADPLNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 S SP+ AL+GK +GD V P G Y +L + Sbjct: 121 SDESPVGHALLGKAVGDKAEVLLPTGHTVEYTVLNI 156 >gi|16800599|ref|NP_470867.1| transcription elongation factor GreA [Listeria innocua Clip11262] gi|16803536|ref|NP_465021.1| transcription elongation factor GreA [Listeria monocytogenes EGD-e] gi|46907724|ref|YP_014113.1| transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. F2365] gi|47095449|ref|ZP_00233059.1| transcription elongation factor GreA [Listeria monocytogenes str. 1/2a F6854] gi|217964358|ref|YP_002350036.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Listeria monocytogenes HCC23] gi|224500662|ref|ZP_03669011.1| transcription elongation factor GreA [Listeria monocytogenes Finland 1988] gi|224501564|ref|ZP_03669871.1| transcription elongation factor GreA [Listeria monocytogenes FSL R2-561] gi|226224097|ref|YP_002758204.1| transcription elongation factor GreA [Listeria monocytogenes Clip81459] gi|254824445|ref|ZP_05229446.1| transcription elongation factor greA [Listeria monocytogenes FSL J1-194] gi|254828270|ref|ZP_05232957.1| transcription elongation factor greA [Listeria monocytogenes FSL N3-165] gi|254829745|ref|ZP_05234400.1| transcription elongation factor GreA [Listeria monocytogenes 10403S] gi|254852120|ref|ZP_05241468.1| transcription elongation factor greA [Listeria monocytogenes FSL R2-503] gi|254898338|ref|ZP_05258262.1| transcription elongation factor GreA [Listeria monocytogenes J0161] gi|254912170|ref|ZP_05262182.1| transcription elongation factor GreA [Listeria monocytogenes J2818] gi|254931431|ref|ZP_05264790.1| transcription elongation factor greA [Listeria monocytogenes HPB2262] gi|254936498|ref|ZP_05268195.1| transcription elongation factor greA [Listeria monocytogenes F6900] gi|254993602|ref|ZP_05275792.1| transcription elongation factor GreA [Listeria monocytogenes FSL J2-064] gi|255017028|ref|ZP_05289154.1| transcription elongation factor GreA [Listeria monocytogenes FSL F2-515] gi|255022898|ref|ZP_05294884.1| transcription elongation factor GreA [Listeria monocytogenes FSL J1-208] gi|255027806|ref|ZP_05299792.1| transcription elongation factor GreA [Listeria monocytogenes FSL J2-003] gi|255029278|ref|ZP_05301229.1| transcription elongation factor GreA [Listeria monocytogenes LO28] gi|255521197|ref|ZP_05388434.1| transcription elongation factor GreA [Listeria monocytogenes FSL J1-175] gi|284801885|ref|YP_003413750.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578] gi|284995027|ref|YP_003416795.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923] gi|290893856|ref|ZP_06556834.1| transcription elongation factor greA [Listeria monocytogenes FSL J2-071] gi|315282402|ref|ZP_07870822.1| transcription elongation factor GreA [Listeria marthii FSL S4-120] gi|54037217|sp|P64278|GREA_LISIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041327|sp|P64277|GREA_LISMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|67460875|sp|Q71ZH4|GREA_LISMF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799560|sp|B8DE15|GREA_LISMH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647647|sp|C1KVE3|GREA_LISMC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|16410925|emb|CAC99574.1| lmo1496 [Listeria monocytogenes EGD-e] gi|16414004|emb|CAC96762.1| lin1531 [Listeria innocua Clip11262] gi|46880993|gb|AAT04290.1| transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. F2365] gi|47016270|gb|EAL07193.1| transcription elongation factor GreA [Listeria monocytogenes str. 1/2a F6854] gi|217333628|gb|ACK39422.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Listeria monocytogenes HCC23] gi|225876559|emb|CAS05268.1| Putative transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600658|gb|EEW13983.1| transcription elongation factor greA [Listeria monocytogenes FSL N3-165] gi|258605422|gb|EEW18030.1| transcription elongation factor greA [Listeria monocytogenes FSL R2-503] gi|258609092|gb|EEW21700.1| transcription elongation factor greA [Listeria monocytogenes F6900] gi|284057447|gb|ADB68388.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578] gi|284060494|gb|ADB71433.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923] gi|290556573|gb|EFD90109.1| transcription elongation factor greA [Listeria monocytogenes FSL J2-071] gi|293582981|gb|EFF95013.1| transcription elongation factor greA [Listeria monocytogenes HPB2262] gi|293590143|gb|EFF98477.1| transcription elongation factor GreA [Listeria monocytogenes J2818] gi|293593681|gb|EFG01442.1| transcription elongation factor greA [Listeria monocytogenes FSL J1-194] gi|307571077|emb|CAR84256.1| greA [Listeria monocytogenes L99] gi|313608715|gb|EFR84544.1| transcription elongation factor GreA [Listeria monocytogenes FSL F2-208] gi|313613954|gb|EFR87678.1| transcription elongation factor GreA [Listeria marthii FSL S4-120] gi|328465535|gb|EGF36764.1| transcription elongation factor GreA [Listeria monocytogenes 1816] gi|328474861|gb|EGF45661.1| transcription elongation factor GreA [Listeria monocytogenes 220] gi|332311938|gb|EGJ25033.1| Transcription elongation factor [Listeria monocytogenes str. Scott A] Length = 160 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 93/151 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 157 >gi|189502128|ref|YP_001957845.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus 5a2] gi|238692311|sp|B3ESB4|GREA_AMOA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189497569|gb|ACE06116.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus 5a2] Length = 157 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 93/150 (62%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +++ EL + E R ++ + +SEAR GDLSENAEY AAKE Q + E R+A+LE Sbjct: 8 TEEGLQRLKGELTQLKSEGRAKVAEQLSEARDKGDLSENAEYDAAKEAQEILERRIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A VI+ ++ ++ + V + K G Y +V ++EAD++ G +SI SPI Sbjct: 68 ELMINARVINKDNINTSAVSILSKVKIKNKKLGKVSTYTMVSEEEADLKEGKISIESPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK+ G++ V AP G+ +EIL + + Sbjct: 128 KGLLGKKAGEVAIVEAPAGKIEFEILDISF 157 >gi|330950316|gb|EGH50576.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7] Length = 126 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATV 92 I AR GDL ENAEY AA+E Q + E R+ ++E + A +ID++T+ ++ FG TV Sbjct: 1 IGTARELGDLKENAEYHAAREQQGMVEARIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTV 60 Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 + + + YQIVG+ EAD++ G +S+ SPIARALI KE GD++ V P G YEI Sbjct: 61 EIANVETDESVVYQIVGEDEADIKKGKISVGSPIARALIAKEEGDVVVVKTPSGVIEYEI 120 Query: 153 LQVLWI 158 ++V I Sbjct: 121 IEVRHI 126 >gi|302871282|ref|YP_003839918.1| GreA/GreB family elongation factor [Caldicellulosiruptor obsidiansis OB47] gi|302574141|gb|ADL41932.1| GreA/GreB family elongation factor [Caldicellulosiruptor obsidiansis OB47] Length = 162 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 93/152 (61%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAAVEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK++GD++ VN P G+ Y+IL++ Sbjct: 129 SPVGKALVGKKVGDVVEVNVPAGKFRYKILEI 160 >gi|313618851|gb|EFR90728.1| transcription elongation factor GreA [Listeria innocua FSL S4-378] Length = 175 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 93/151 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 172 >gi|116872925|ref|YP_849706.1| transcription elongation factor GreA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458483|sp|A0AIU5|GREA_LISW6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116741803|emb|CAK20927.1| transcription elongation factor GreA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 160 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 93/151 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLEGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKI 157 >gi|317120993|ref|YP_004100996.1| transcription elongation factor GreA [Thermaerobacter marianensis DSM 12885] gi|315590973|gb|ADU50269.1| transcription elongation factor GreA [Thermaerobacter marianensis DSM 12885] Length = 159 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + + Sbjct: 61 GRIIELEKMLRNARIVNDEEIDPTKVNIGSTVHLKDVDTGEEVQYTIVGSNEADPAALRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL G+ +G+++ V P G YEI+++ Sbjct: 121 SYQSPVGKALFGRSVGEVVEVKVPAGTLRYEIVRI 155 >gi|240143459|ref|ZP_04742060.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|257204492|gb|EEV02777.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] Length = 159 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 7 LTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +S SP+ Sbjct: 67 EKILKNAEVVVEEEADLDKVSIGCSVKILDCEFEEELEYKIVGSTEANSLKGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD ++V P GE +Y++L + Sbjct: 127 GKALLGKQVGDTVTVETPAGEFSYKVLSI 155 >gi|289434776|ref|YP_003464648.1| transcription elongation factor GreA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171020|emb|CBH27562.1| transcription elongation factor GreA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313637769|gb|EFS03123.1| transcription elongation factor GreA [Listeria seeligeri FSL S4-171] Length = 160 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 92/151 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ VE G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAESHNGLVTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKI 157 >gi|221633065|ref|YP_002522290.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] gi|254799575|sp|B9L0L0|GREA_THERP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221157000|gb|ACM06127.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] Length = 156 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 5/155 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++IP+T +G + ++QE + + RP I + I EAR +GD+ ENA Y AAK Q EGR Sbjct: 4 ERIPITREGLEALRQEYEYLVKHRRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + E+E ++ R E+I+ T GDR + G+TV++ + G+ + Y IVG EA +G + Sbjct: 64 IREIEELLKRVELIEQPT-DGDRSVVRVGSTVTI--EIDGEIETYTIVGAIEAKPSAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ RAL+G G+I+ + P G I++V Sbjct: 121 SNESPVGRALLGHRAGEIVPIETPNGTLMARIIEV 155 >gi|150026396|ref|YP_001297222.1| transcription elongation factor GreA [Flavobacterium psychrophilum JIP02/86] gi|166200662|sp|A6H247|GREA_FLAPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149772937|emb|CAL44421.1| Transcription elongation factor GreA [Flavobacterium psychrophilum JIP02/86] Length = 158 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T++G K++ EL + ERP+ I+EAR GDLSENAEY AAKE Q L E ++ ++E Sbjct: 8 TAEGLKKLKDELEQLKAIERPKASADIAEARDKGDLSENAEYDAAKEAQGLLELKIKKME 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + A +ID S + + + V + +++G + +Y +V + EAD+++G +S++SPI Sbjct: 68 EVYSNARLIDESQLDVSKALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKISVTSPIG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G+I + P G +E+L++ Sbjct: 128 KGLLGKSVGEIAEITVPNGILKFEVLEI 155 >gi|315644113|ref|ZP_07897283.1| transcription elongation factor GreA [Paenibacillus vortex V453] gi|315280488|gb|EFU43777.1| transcription elongation factor GreA [Paenibacillus vortex V453] Length = 163 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 94/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + +K YQ+VG EADV + V Sbjct: 66 TRIIILEKTLNSARIVDSKQVSSTTVNVGSNVVLNDIEFAEKLEYQVVGPAEADVLNNKV 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK +GD ++V+AP G YE+L++ Sbjct: 126 SYESPLGKALMGKAVGDQVNVDAPMGIVKYELLEI 160 >gi|187777498|ref|ZP_02993971.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC 15579] gi|187774426|gb|EDU38228.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC 15579] Length = 160 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFAEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 126 SPVGNGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|222151496|ref|YP_002560652.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402] gi|254799561|sp|B9E6Y8|GREA_MACCJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222120621|dbj|BAH17956.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402] Length = 158 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T +GFDK++ EL + RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 3 MQKEYPMTQEGFDKLEVELEHLKTVRRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFVE 62 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ++E ++ A +I+ S + G TV+ E ++++Y+IVG EAD G + Sbjct: 63 QEITKIEMMLRHAVIIE-DDGSKSEVQIGRTVTFAEVPGNEEESYKIVGSAEADPFEGKI 121 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S SPIA+AL+GK++GD ++V P G Sbjct: 122 SNESPIAKALLGKKVGDEVNVPLPNG 147 >gi|329767531|ref|ZP_08259054.1| transcription elongation factor greA [Gemella haemolysans M341] gi|328835865|gb|EGF85587.1| transcription elongation factor greA [Gemella haemolysans M341] Length = 162 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 90/140 (64%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+ +EL + ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+ Sbjct: 11 MTQEGYDKLVEELEYYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRILEM 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I++ S I G TV+ E G + Y+IVG EA+ +S SP+ Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPDGLTETYKIVGSAEANPFEYKISNESPV 129 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GKE+GD+ V+ P G Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149 >gi|168701830|ref|ZP_02734107.1| transcription elongation factor greA [Gemmata obscuriglobus UQM 2246] Length = 161 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 95/153 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D+IP+T +G+DK++ EL + E I K ++ AR GDLSENAEY AA+E Q + + R Sbjct: 4 DRIPMTREGYDKLKVELDRLRGAEMIEITKRVAAARDLGDLSENAEYHAAREDQGILQAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + ++RA ++D S + D +AFG+ V +++ + +++ +++V + + G + Sbjct: 64 IDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILT 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI + LIG++ GD + + P G ++IL++ Sbjct: 124 GSPIGQGLIGRKKGDTVEIQVPSGTIKFKILEI 156 >gi|153938788|ref|YP_001392874.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|168183600|ref|ZP_02618264.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|170756932|ref|YP_001783160.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|170758438|ref|YP_001788860.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|237796981|ref|YP_002864533.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|229485765|sp|B1IGJ3|GREA_CLOBK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238686691|sp|A7GJB4|GREA_CLOBL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238688748|sp|B1KTC2|GREA_CLOBM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647638|sp|C3KVU0|GREA_CLOB6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152934684|gb|ABS40182.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|169122144|gb|ACA45980.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|169405427|gb|ACA53838.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|182673170|gb|EDT85131.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|229263650|gb|ACQ54683.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|295320851|gb|ADG01229.1| transcription elongation factor GreA [Clostridium botulinum F str. 230613] Length = 160 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|322391681|ref|ZP_08065149.1| transcription elongation factor GreA [Streptococcus peroris ATCC 700780] gi|321145492|gb|EFX40885.1| transcription elongation factor GreA [Streptococcus peroris ATCC 700780] Length = 160 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKVARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G Sbjct: 88 AIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|149177265|ref|ZP_01855871.1| transcription elongation factor greA [Planctomyces maris DSM 8797] gi|148843979|gb|EDL58336.1| transcription elongation factor greA [Planctomyces maris DSM 8797] Length = 158 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+ P+T +G+DK+++E+R + + P I + I++ARA GDL EN EY A +E Q + + Sbjct: 1 MDRHPITQEGYDKLREEIRHLESDVMPEIAEKIADARAEGDLKENTEYHAQREAQGMTQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +L++ + + D STM + FG+ V++ + G + Y+ VG E D ++ Sbjct: 61 KINQLKSKLANCYIADKSTMPKGVVTFGSIVTVKNLDDGLDEKYEFVGPGEEDYLGEVMK 120 Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SSP+A L+ K++GD + V P G +E++Q+ Sbjct: 121 ILTSSPLAEGLLNKKVGDKVEVEVPSGTLKFEVIQI 156 >gi|195978755|ref|YP_002123999.1| transcription elongation factor GreA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867928|ref|YP_002743876.1| transcription elongation factor [Streptococcus equi subsp. zooepidemicus] gi|225871158|ref|YP_002747105.1| transcription elongation factor [Streptococcus equi subsp. equi 4047] gi|195975460|gb|ACG62986.1| transcription elongation factor GreA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700562|emb|CAW95060.1| transcription elongation factor [Streptococcus equi subsp. equi 4047] gi|225701204|emb|CAW98132.1| transcription elongation factor [Streptococcus equi subsp. zooepidemicus] Length = 176 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 2/126 (1%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D + Sbjct: 44 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV + E + Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P Sbjct: 104 AIGKTVVVQEVGTQTTDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVKIESPAA 163 Query: 147 EKTYEI 152 TYE+ Sbjct: 164 --TYEV 167 >gi|315303245|ref|ZP_07873892.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596] gi|313628385|gb|EFR96871.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596] Length = 175 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 92/151 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ VE G ++ Y IVG EAD G +S S Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFVELPDGVEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIQKI 172 >gi|310829433|ref|YP_003961790.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612] gi|308741167|gb|ADO38827.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612] Length = 161 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 91/153 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G D +++ L + + +R + I AR YGDLSENAEY AK Q EG Sbjct: 7 EELVMTQEGLDNLKKRLEYLKTVKRYEVAARIKTAREYGDLSENAEYDEAKSEQGFVEGE 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE I + +VID + + + + G+ V + + GD + Y+IVG E+D+ +S Sbjct: 67 ISELEAKIKKVKVIDDNDIHTEDVGVGSIVKVKDLEFGDTEEYKIVGSAESDIAQNKLSN 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ R LIG ++G ++++ P GE YEIL + Sbjct: 127 ESPVGRGLIGAKVGQVVTIPIPDGEVQYEILDI 159 >gi|322807846|emb|CBZ05421.1| transcription elongation factor GreA [Clostridium botulinum H04402 065] Length = 160 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGISKYEILEV 157 >gi|323343448|ref|ZP_08083675.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269] gi|323095267|gb|EFZ37841.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 87/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ L Sbjct: 4 MSQEGYDKLVAELRQLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D S +S D + + V + + K +Y IV + EAD++ G +SI +PI Sbjct: 64 KLTIAEAKIVDTSRLSTDAVQILSKVDMTNMTTKSKMSYTIVSESEADLKQGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 124 AQGLLNKKVGDEVEIKIPRG 143 >gi|288925501|ref|ZP_06419434.1| transcription elongation factor GreA [Prevotella buccae D17] gi|315606633|ref|ZP_07881644.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574] gi|288337717|gb|EFC76070.1| transcription elongation factor GreA [Prevotella buccae D17] gi|315251643|gb|EFU31621.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 87/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 4 MSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D S +S D + +TV + + K Y IV + EA+++ G +SI +PI Sbjct: 64 KTTIAEAKIVDTSRLSADAVQILSTVEMTNMGNKAKMTYTIVSESEANLKEGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD+ + P G Sbjct: 124 AQGLLNKKVGDVAEIKIPSG 143 >gi|299535716|ref|ZP_07049037.1| transcription elongation factor GreA [Lysinibacillus fusiformis ZC1] gi|298728916|gb|EFI69470.1| transcription elongation factor GreA [Lysinibacillus fusiformis ZC1] Length = 162 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 4/154 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ Sbjct: 8 PMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRIST 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVS 121 L+++I A +I ++ G TV+ VE K S D+++Y IVG EAD +S Sbjct: 68 LKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEFRIS 127 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ L+G+ G+ + V PGGE +IL + Sbjct: 128 NESPIAKGLLGRAEGEEVVVQTPGGEMKVKILSI 161 >gi|254520541|ref|ZP_05132597.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA] gi|226914290|gb|EEH99491.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA] Length = 160 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ Sbjct: 6 KFVMTYEGVKKLEDELEFLKSVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A V+D S + D+++ G V + + ++ Y IVG EAD +S Sbjct: 66 IQLENMLKNAVVVDGSEIPTDKVSVGTKVKVKDYEFDEEVEYSIVGSAEADPMEFKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+GK++G+I+ V PGG +EIL + Sbjct: 126 SPVGAALLGKKVGEIVEVLVPGGINKFEILGI 157 >gi|168180989|ref|ZP_02615653.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|226950976|ref|YP_002806067.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] gi|254799555|sp|C1FNC6|GREA_CLOBJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|182668066|gb|EDT80045.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|226841785|gb|ACO84451.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] Length = 160 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|289449476|ref|YP_003475259.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184023|gb|ADC90448.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 160 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 97/155 (62%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V++I +T +GF+ +++EL R+ R + + I A ++GDLSEN+EY AK+ Q NEG Sbjct: 4 VEQIEMTLEGFNHLKEELEHRKIVVRSEVAERIKVALSFGDLSENSEYDDAKQAQAENEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I+ + VID +S + G+ L ++ +G++ Y IVG +E ++ +S Sbjct: 64 RIMEIEAILKKVRVIDNDEISKTNVTLGSAFVLRDEATGEETQYTIVGAKEENIFENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ + ++GK+ G +ISV AP G+ Y+I+++ Sbjct: 124 SDSPVGQQVLGKKKGSVISVKAPIGQLKYKIVKIC 158 >gi|268592314|ref|ZP_06126535.1| transcription elongation factor GreB [Providencia rettgeri DSM 1131] gi|291312097|gb|EFE52550.1| transcription elongation factor GreB [Providencia rettgeri DSM 1131] Length = 161 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MTKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + +I+ R+ FGA V L ++N + + ++IVG E + + Sbjct: 61 RRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENE-NIRIFRIVGADEFNPTKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SP+ARALIGK++ D I+VN PGG+ TY +L++ Sbjct: 120 SIDSPVARALIGKQVDDEITVNTPGGQVTYFVLEI 154 >gi|157150808|ref|YP_001449835.1| transcription elongation factor GreA [Streptococcus gordonii str. Challis substr. CH1] gi|262282147|ref|ZP_06059916.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA] gi|189042252|sp|A8AVM5|GREA_STRGC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157075602|gb|ABV10285.1| transcription elongation factor greA [Streptococcus gordonii str. Challis substr. CH1] gi|262262601|gb|EEY81298.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA] Length = 160 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 G TV++ E +K+ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G Sbjct: 88 GIGKTVTIQEVGETEKEVYIIVGSAGADAFAGKVSNESPIGQALIGKKKGDIATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|126653894|ref|ZP_01725741.1| transcription elongation factor GreA [Bacillus sp. B14905] gi|126589619|gb|EAZ83758.1| transcription elongation factor GreA [Bacillus sp. B14905] Length = 162 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 4/154 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ Sbjct: 8 PMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRIST 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVS 121 L+++I A +I ++ G TV+ VE K S D+++Y IVG EAD +S Sbjct: 68 LKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEFRIS 127 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ L+G+ G+ ++V PGGE +I+ + Sbjct: 128 NESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSI 161 >gi|311277660|ref|YP_003939891.1| transcription elongation factor GreB [Enterobacter cloacae SCF1] gi|308746855|gb|ADO46607.1| transcription elongation factor GreB [Enterobacter cloacae SCF1] Length = 157 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 92/150 (61%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD K ++IVG E Q +SI Sbjct: 62 VRYLTKCLEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDIKRFRIVGYDEIFGQKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ +V PGGE T+ + Sbjct: 121 DSPMARALLKKEVGDLATVQTPGGEATWYV 150 >gi|124006704|ref|ZP_01691535.1| transcription elongation factor GreA [Microscilla marina ATCC 23134] gi|123987612|gb|EAY27312.1| transcription elongation factor GreA [Microscilla marina ATCC 23134] Length = 157 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 94/148 (63%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G K++ EL+ + + R + I+EAR GDLSENAEY AAK+ Q L E ++A+LE Sbjct: 8 TKEGLKKLKDELQHLKTKGRADMAYQIAEARDKGDLSENAEYDAAKDAQGLLELKIAKLE 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + A +ID S + +++ +TV + + Y +V ++EA+++ G +S+ SP+ Sbjct: 68 DTVANARIIDESNIDTSKVSILSTVKIKHQKLKKVLTYTLVSEEEANLKEGKISVQSPVG 127 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK++G++ V+ P G+ +EIL++ Sbjct: 128 KGLLGKKVGEVAEVHTPAGKTDFEILEI 155 >gi|238754105|ref|ZP_04615463.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473] gi|238707601|gb|EEP99960.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473] Length = 163 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + EL++ +EERPR+ +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDLELKYLWREERPRVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE + G+++ +++VG E D +SI SP+ Sbjct: 67 SKRLDVLKIVDPDPRQEGKVYFGAWVR-VENDQGEERVFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D I+V P GE TYEIL + Sbjct: 126 ARALIGKQVDDEITVQTPNGEATYEILAI 154 >gi|116625760|ref|YP_827916.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus Ellin6076] gi|116228922|gb|ABJ87631.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus Ellin6076] Length = 164 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 88/145 (60%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+Q E+ + E + K I +AR +GDL ENAEY AAK+ Q R+ +L++ + + Sbjct: 7 KLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQL 66 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +ID + + D+ G+TV +++ S + Y +V +EAD +G VS +SPI RAL+GK Sbjct: 67 AMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGK 126 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 +GD + V +PGG K EIL++ I Sbjct: 127 TVGDEVKVMSPGGVKELEILKLTTI 151 >gi|308068951|ref|YP_003870556.1| transcription elongation factor greA (transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|305858230|gb|ADM70018.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Paenibacillus polymyxa E681] Length = 159 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 94/153 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G K++ EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R Sbjct: 4 EEVLLTKEGLAKLEDELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE ++T+A V+D S + ++ G+TV L + +K Y+IV EADV +S Sbjct: 64 ILILEKMLTKARVVDESNLDLRTVSIGSTVILNDIEFSEKMEYKIVSPAEADVLDNKISY 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GKE+G II V+AP YE+L++ Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEI 156 >gi|269792851|ref|YP_003317755.1| transcription elongation factor GreA [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100486|gb|ACZ19473.1| transcription elongation factor GreA [Thermanaerovibrio acidaminovorans DSM 6589] Length = 164 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 97/153 (63%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R Sbjct: 9 EQVIMTREGYEKLKQELASLRGDGRSEIASKLEEARAFGDLSENAEYHAAKEEQEKLESR 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE +++A+V++ S + ++ GATV L + ++G+ Y +VG +EAD ++ +S Sbjct: 69 IMWLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISA 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +A+IG+ G+ + V P G + I ++ Sbjct: 129 QSPVGKAIIGRAEGEEVIVRVPKGTRHLRIERI 161 >gi|295694793|ref|YP_003588031.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] gi|295410395|gb|ADG04887.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] Length = 158 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 92/152 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T G K+++EL + + +R + + I A +YGD+SEN+EY+ AK Q EGR+ Sbjct: 5 EVLLTPGGLQKLEEELEYLKSVKRREVAERIKTAISYGDISENSEYEDAKNEQAFVEGRI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ A +I S + D ++ G+TVSL + G+ Y IVG E+D +S Sbjct: 65 ITLEKMLRNARIIKDSDVDTDVVSIGSTVSLKDLEFGEVVEYTIVGSAESDPVENRISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ RAL+G+ +G++++V P G YEILQ+ Sbjct: 125 SPVGRALLGRRVGEVVNVEVPDGVLQYEILQI 156 >gi|78776745|ref|YP_393060.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] gi|78497285|gb|ABB43825.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] Length = 174 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 96/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ +G+D + +E ++ + E+P+ + A A GD SENA+YQAAKE + R+ Sbjct: 4 PMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRLFY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I +A +ID ST+ +++FG++V +++ S ++ Y I G E++ ++GL+SI SP Sbjct: 64 LNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIHSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ ++GK + D + P +K YEIL++ + Sbjct: 124 LAQVMLGKRVSDEFKIQLPLMKKEYEILEIYY 155 >gi|329924684|ref|ZP_08279699.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] gi|328940518|gb|EGG36840.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] Length = 163 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 92/155 (59%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + ++ YQ+VG EADV + V Sbjct: 66 TRIIILEKTLNNARIVDAKDISSTTVNVGSNVVLNDIEFSERLEYQVVGPAEADVANNKV 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK +GD + V AP G YE+L++ Sbjct: 126 SYESPLGKALMGKAVGDKVHVEAPMGIVKYELLEI 160 >gi|322387442|ref|ZP_08061052.1| transcription elongation factor GreA [Streptococcus infantis ATCC 700779] gi|321141971|gb|EFX37466.1| transcription elongation factor GreA [Streptococcus infantis ATCC 700779] Length = 160 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 85/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ + + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKNEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +K+ Y IVG AD +G VS SPI +ALIGK+ GD++++ P G Sbjct: 88 AIGKTVTIQEVGEDEKEVYIIVGSAGADAFAGKVSNESPIGQALIGKKKGDVVTIETPAG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|254498603|ref|ZP_05111322.1| transcription elongation factor GreA [Legionella drancourtii LLAP12] gi|254352143|gb|EET10959.1| transcription elongation factor GreA [Legionella drancourtii LLAP12] Length = 139 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 85/116 (73%), Gaps = 1/116 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G + +++EL+ + +RPRI+++I+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 22 MNKHPMTIQGAEALKEELQRLKFVDRPRIVESIATARAHGDLKENAEYHAAREQQSFNEG 81 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ ELE ++ A++IDIS + + ++ FG+TV++ + + YQIVG+ EAD++ Sbjct: 82 RIQELEAKLSNAQIIDISKLPNNGKVVFGSTVTVCHVATDAQLTYQIVGEDEADIK 137 >gi|313205435|ref|YP_004044092.1| transcription elongation factor grea [Paludibacter propionicigenes WB4] gi|312444751|gb|ADQ81107.1| transcription elongation factor GreA [Paludibacter propionicigenes WB4] Length = 151 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 95/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ K+ +EL + +RP I K I EAR GDLSENAEY AAKE Q + E R++ L Sbjct: 1 MTAEGYRKLVEELNELESVQRPAISKQIGEARDKGDLSENAEYDAAKEAQGMLEMRISNL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++I A +ID S ++ + + V + + +Y IV + EA+ + G +S+++PI Sbjct: 61 KDMIASARMIDESKINTNEVQILTRVKIKNTKTNQLMSYMIVSESEANFKEGKLSVTTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++G+ +V+ P G +E++++ Sbjct: 121 AKGLLGKKVGERATVSVPSGMLEFEVMEI 149 >gi|289550623|ref|YP_003471527.1| Transcription elongation factor GreA [Staphylococcus lugdunensis HKU09-01] gi|315658118|ref|ZP_07910990.1| transcription elongation factor GreA [Staphylococcus lugdunensis M23590] gi|289180155|gb|ADC87400.1| Transcription elongation factor GreA [Staphylococcus lugdunensis HKU09-01] gi|315496447|gb|EFU84770.1| transcription elongation factor GreA [Staphylococcus lugdunensis M23590] Length = 158 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 1/141 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+D ++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYDNLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ T + + G TV+ VE ++++YQIVG EAD G +S SP Sbjct: 68 IEHMLRYALIIE-DTGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 +A++LIGK L D + V P G Sbjct: 127 MAKSLIGKGLNDEVRVQLPNG 147 >gi|229496616|ref|ZP_04390330.1| transcription elongation factor GreA [Porphyromonas endodontalis ATCC 35406] gi|229316513|gb|EEN82432.1| transcription elongation factor GreA [Porphyromonas endodontalis ATCC 35406] Length = 156 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GFD++ E+ ++EERP I +AI+EAR GDLSENAEY AA+E Q L E ++++L Sbjct: 6 MTQDGFDRLMDEISRLEREERPAIAQAIAEARDKGDLSENAEYDAAREAQGLLEAKISQL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +ID ST+ ++ V + + Y IV + +A+ + +S+++PI Sbjct: 66 KTQAANTRIIDESTIDTSKVQLLTKVKVKRLDDNSIIEYTIVPEIDANFKERKLSVTAPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR LIGK++G+I V P G +EIL++ Sbjct: 126 ARGLIGKKVGEIAEVQVPIGLLRFEILEI 154 >gi|150014996|ref|YP_001307250.1| transcription elongation factor GreA [Clostridium beijerinckii NCIMB 8052] gi|229485763|sp|A6LPL4|GREA_CLOB8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149901461|gb|ABR32294.1| transcription elongation factor GreA [Clostridium beijerinckii NCIMB 8052] Length = 160 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 88/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ +L Sbjct: 9 MTYEGVKKLESELEYLKTVKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEGRIIQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S SP+ Sbjct: 69 ENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK++GD++ V P G +EIL + Sbjct: 129 GNALVGKKVGDVVEVTVPDGVNKFEILGI 157 >gi|163748836|ref|ZP_02156088.1| transcription elongation factor GreB [Shewanella benthica KT99] gi|161331610|gb|EDQ02415.1| transcription elongation factor GreB [Shewanella benthica KT99] Length = 161 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ + +EL++ +E RP+I K + EA A GD SENA+Y K L +GR+ L Sbjct: 6 ITRKGWQALDKELKYLWKEYRPQITKKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA + L E +GD Y+IVG E D + G ++I SP+ Sbjct: 66 VKRVEELKIVDYSPQQEGKVFFGAWIEL-ENEAGDVVQYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D I V P G K + + Sbjct: 125 ARALIGKQVDDDIVVQTPSGSKEWYV 150 >gi|270291043|ref|ZP_06197266.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|304385319|ref|ZP_07367664.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] gi|270280439|gb|EFA26274.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|304328526|gb|EFL95747.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G+ KIQQE+ ++ RP +IKA+++ARA GDLSENAEY AAK EGR+ Sbjct: 6 VPMTKTGYQKIQQEI-ADLKKTRPGLIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I +++++ + + +I G+ V+L + Y+IVG EADV VS S Sbjct: 65 YLERQINYSKIVENTDRT--KIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSYQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ L D+++VNAP + EIL + Sbjct: 123 PLGAALLHHHLHDVVTVNAPDEQYQVEILAI 153 >gi|293393396|ref|ZP_06637708.1| transcription elongation factor GreB [Serratia odorifera DSM 4582] gi|291424133|gb|EFE97350.1| transcription elongation factor GreB [Serratia odorifera DSM 4582] Length = 157 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++D S ++ FGA V VE + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVE-VENDDGDLKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ K++GD VN P GE + + Q+ ++ Sbjct: 125 ARALLKKQVGDTAMVNTPAGEALWYVNQIEYV 156 >gi|237728725|ref|ZP_04559206.1| transcription elongation factor GreB [Citrobacter sp. 30_2] gi|283835801|ref|ZP_06355542.1| hypothetical protein CIT292_10195 [Citrobacter youngae ATCC 29220] gi|226909347|gb|EEH95265.1| transcription elongation factor GreB [Citrobacter sp. 30_2] gi|291067966|gb|EFE06075.1| transcription elongation factor GreB [Citrobacter youngae ATCC 29220] Length = 157 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD + ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDIRKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN PGGE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPGGEASWYVNEIEYV 156 >gi|261749563|ref|YP_003257249.1| transcription elongation factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497656|gb|ACX84106.1| transcription elongation factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 162 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+QQE+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+L Sbjct: 9 ITKEGLKKLQQEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAKL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A +ID S ++ R++ +TV + G ++ Y +V + EAD++SG +SI++PI Sbjct: 69 KKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPI 128 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + L+GK++G I + P YEIL++ + Sbjct: 129 STGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160 >gi|146319370|ref|YP_001199082.1| transcription elongation factor GreA [Streptococcus suis 05ZYH33] gi|146321576|ref|YP_001201287.1| transcription elongation factor GreA [Streptococcus suis 98HAH33] gi|253752398|ref|YP_003025539.1| transcription elongation factor [Streptococcus suis SC84] gi|253754224|ref|YP_003027365.1| transcription elongation factor [Streptococcus suis P1/7] gi|253756158|ref|YP_003029298.1| transcription elongation factor [Streptococcus suis BM407] gi|166200976|sp|A4W3E8|GREA_STRS2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166201074|sp|A4VX43|GREA_STRSY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145690176|gb|ABP90682.1| Transcription elongation factor [Streptococcus suis 05ZYH33] gi|145692382|gb|ABP92887.1| Transcription elongation factor [Streptococcus suis 98HAH33] gi|251816687|emb|CAZ52328.1| transcription elongation factor [Streptococcus suis SC84] gi|251818622|emb|CAZ56456.1| transcription elongation factor [Streptococcus suis BM407] gi|251820470|emb|CAR47194.1| transcription elongation factor [Streptococcus suis P1/7] gi|319758803|gb|ADV70745.1| transcription elongation factor GreA [Streptococcus suis JS14] Length = 160 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I++ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE+++ ++ D + Sbjct: 28 RPEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG ADV + +S SPI ALIGK+ GD+ ++ P G Sbjct: 88 AIGKTVTVQEVGETEEEVYHIVGAAGADVFANKISNESPIGHALIGKKTGDVATIETPAG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|148381460|ref|YP_001256001.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 3502] gi|153933740|ref|YP_001385835.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|153937864|ref|YP_001389242.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|229485762|sp|A7FZA6|GREA_CLOB1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229485764|sp|A5I7P5|GREA_CLOBH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148290944|emb|CAL85080.1| transcription elongation factor [Clostridium botulinum A str. ATCC 3502] gi|152929784|gb|ABS35284.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|152933778|gb|ABS39277.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] Length = 160 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 90/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 6 KYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK+ GDII V P G YEIL+V Sbjct: 126 SPVGHGLIGKKAGDIIEVAVPDGVSKYEILEV 157 >gi|188590469|ref|YP_001919617.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|251779196|ref|ZP_04822116.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689627|sp|B2UXU9|GREA_CLOBA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|188500750|gb|ACD53886.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|243083511|gb|EES49401.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG++ +L Sbjct: 9 MTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGKILQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S SP+ Sbjct: 69 ENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GDI+ V P G +EIL + Sbjct: 129 GKALVGKKIGDIVDVVVPDGISKFEILDI 157 >gi|291530006|emb|CBK95591.1| transcription elongation factor GreA [Eubacterium siraeum 70/3] Length = 156 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IGK+LG+ +SV AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGKKLGEEVSVEAPAGVKKYKIVEI 154 >gi|295696559|ref|YP_003589797.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] gi|295412161|gb|ADG06653.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] Length = 158 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+++EL W + E+R + + + AR+YGDLSEN+EY AAKE Q E R+ +L Sbjct: 9 MTEEGLRKLKEELEWLKTEKRAEVKERLKIARSYGDLSENSEYDAAKEEQAFVESRILQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I RA++I ++ G+TV++ E G ++ Y IVG EAD +S SPI Sbjct: 69 EDQIRRAKIIREEDRVEGVVSIGSTVTIRELPDGPEETYTIVGTAEADPGKFRISNESPI 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L+G+ G+ + + P GE + ILQ+ Sbjct: 129 GAGLLGRRAGEEVGIQTPAGEILFRILQI 157 >gi|329769158|ref|ZP_08260578.1| transcription elongation factor greA [Gemella sanguinis M325] gi|328839377|gb|EGF88955.1| transcription elongation factor greA [Gemella sanguinis M325] Length = 162 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 90/140 (64%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D++ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+ Sbjct: 11 MTQEGYDQLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRILEM 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S SP+ Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPNGATETYKIVGSAEANPFEYKISNESPV 129 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GKE+GD+ V+ P G Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149 >gi|313623703|gb|EFR93852.1| transcription elongation factor GreA [Listeria innocua FSL J1-023] Length = 175 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 91/151 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 82 TIENXXXNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 172 >gi|312879693|ref|ZP_07739493.1| transcription elongation factor GreA [Aminomonas paucivorans DSM 12260] gi|310782984|gb|EFQ23382.1| transcription elongation factor GreA [Aminomonas paucivorans DSM 12260] Length = 153 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 94/149 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R+ L Sbjct: 2 MTREGYEKLKQELISLRGDGRSEIAAKLEEARAFGDLSENAEYHAAKEEQEKLESRILWL 61 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +++ ++++ + ++ G TVSL + ++ + Y +VG +EAD ++ +S SP+ Sbjct: 62 EYQLSKTRIVEVGDLDTSSVSLGTTVSLRDLDAQTQYTYTLVGSEEADPKTNRISSQSPV 121 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK +G+ + V P G + ++L++ Sbjct: 122 GKAILGKTVGEEVMVRVPKGVRHLKVLEI 150 >gi|312128202|ref|YP_003993076.1| grea/greb family elongation factor [Caldicellulosiruptor hydrothermalis 108] gi|312793713|ref|YP_004026636.1| transcription elongation factor grea [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877911|ref|ZP_07737855.1| transcription elongation factor GreA [Caldicellulosiruptor lactoaceticus 6A] gi|311778221|gb|ADQ07707.1| GreA/GreB family elongation factor [Caldicellulosiruptor hydrothermalis 108] gi|311795303|gb|EFR11688.1| transcription elongation factor GreA [Caldicellulosiruptor lactoaceticus 6A] gi|312180853|gb|ADQ41023.1| transcription elongation factor GreA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 162 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 93/152 (61%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK++GD++ V+ P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160 >gi|51894292|ref|YP_076983.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51857981|dbj|BAD42139.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 87/145 (60%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G +++QEL + + +R + + I +AR YGD+SEN+EY+ AK Q EGR+ LE ++ Sbjct: 12 GLKQLEQELLYLRTVKRMEVAERIKQAREYGDISENSEYEDAKNEQAFIEGRILVLEKML 71 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 A VID + + G+TV L + GD+ Y IVG EAD +S SP+ RA+ Sbjct: 72 RNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNRISNESPVGRAI 131 Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155 +G+ +G +++V+AP G YEI+ + Sbjct: 132 MGQRVGTVVAVDAPDGVFKYEIVAI 156 >gi|294102451|ref|YP_003554309.1| transcription elongation factor GreA [Aminobacterium colombiense DSM 12261] gi|293617431|gb|ADE57585.1| transcription elongation factor GreA [Aminobacterium colombiense DSM 12261] Length = 163 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D PV T G++K+ EL + + R I + + EAR++GDLSENAEY AAK+ Q+ E Sbjct: 7 DGAPVMTRSGYEKLTAELVELRSDGRAEISRQLEEARSFGDLSENAEYAAAKDEQSKLES 66 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ LE +++A+VID S + R+ G TV++ + Y +VG +EAD + +S Sbjct: 67 RISWLEFQLSKAKVIDTSDVDTSRVTLGTTVTIEDITHKKVFTYTVVGSEEADPKMNHIS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SSP+ +AL GK +G+ + V P G + +I+ + Sbjct: 127 SSSPVGKALFGKTIGEEVQVKVPRGIRNLKIVSI 160 >gi|296131771|ref|YP_003639018.1| GreA/GreB family elongation factor [Thermincola sp. JR] gi|296030349|gb|ADG81117.1| GreA/GreB family elongation factor [Thermincola potens JR] Length = 158 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K + +T G K++ EL + +R + + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MVEKEVILTLDGLKKLEHELEQLKTVKRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A VID + D ++ G+TV L + GD+ Y IVG EAD + Sbjct: 61 EGRILTLEKMLRNARVIDEGDVHTDVVSIGSTVLLKDLEFGDEIAYTIVGSAEADPSANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+G++ G+II VN P G Y+I+ + Sbjct: 121 ISNESPVGKALLGQKTGEIIEVNVPAGTLKYQIMGI 156 >gi|320109162|ref|YP_004184752.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4] gi|319927683|gb|ADV84758.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 90/145 (62%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K++++++ + E + I A A GDLSENAEY +AK+ Q + +L+ + Sbjct: 8 KLEEQIKQLEYELTNELPAEIKRAVALGDLSENAEYHSAKQRQEFVNAHLGQLKKRMAEL 67 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +++++ + DRI FG+T+ + + ++ Y++V +E+DV GL+S +SPI R+L+GK Sbjct: 68 SLVNLANIPHDRIGFGSTIVVFDTTKNEELTYKLVTSEESDVTQGLISTTSPIGRSLVGK 127 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 ++GD ++V P G++ E+L++ I Sbjct: 128 QVGDTVTVVTPNGKRELEVLKLTTI 152 >gi|257440517|ref|ZP_05616272.1| transcription elongation factor GreA [Faecalibacterium prausnitzii A2-165] gi|257197021|gb|EEU95305.1| transcription elongation factor GreA [Faecalibacterium prausnitzii A2-165] Length = 161 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSASGLKAMQDELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A +ID S +S D +A G VS+ + + Y IVG EAD +G + Sbjct: 61 NRITELEQMVKNAVIIDESELSVDSVAVGTHVSIKMIGDDEAEEYDIVGRTEADPINGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 S SP+ AL+GK +G+ V P G+ YE+L + Sbjct: 121 SDESPVGHALLGKAVGEKAEVLLPSGQIVEYEVLAI 156 >gi|217077586|ref|YP_002335304.1| transcription elongation factor GreA [Thermosipho africanus TCF52B] gi|226737011|sp|B7ID86|GREA_THEAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|217037441|gb|ACJ75963.1| transcription elongation factor GreA [Thermosipho africanus TCF52B] Length = 156 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R Sbjct: 4 ESIYLTKEGYEKLKAELDQLKQKLMFEIAQRIKEARELGDLSENSEYQEAKNEQGRIAAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELEN++++AEVI+ + + I G V + ++G++K QIV EADV + +S Sbjct: 64 INELENMLSKAEVIE--GLDTNVINIGNWVLIKNLDTGEEKTIQIVTPHEADVFNNKISF 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI R L+GK++G+++ + AP G Y+IL + Sbjct: 122 ESPIGRVLVGKKVGEVVKIKAPKGVFKYQILGI 154 >gi|222528673|ref|YP_002572555.1| transcription elongation factor GreA [Caldicellulosiruptor bescii DSM 6725] gi|312623018|ref|YP_004024631.1| transcription elongation factor grea [Caldicellulosiruptor kronotskyensis 2002] gi|222455520|gb|ACM59782.1| transcription elongation factor GreA [Caldicellulosiruptor bescii DSM 6725] gi|312203485|gb|ADQ46812.1| transcription elongation factor GreA [Caldicellulosiruptor kronotskyensis 2002] Length = 162 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 93/152 (61%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK++GD++ V+ P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160 >gi|319946449|ref|ZP_08020686.1| transcription elongation factor GreA [Streptococcus australis ATCC 700641] gi|319747417|gb|EFV99673.1| transcription elongation factor GreA [Streptococcus australis ATCC 700641] Length = 160 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 81/129 (62%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E ++ Y IVG AD +G +S SPI ALIGK+ GD +++ P G Sbjct: 88 AIGKTVTVQEIGEDEEDVYIIVGSAGADAFAGKISNESPIGHALIGKKTGDTVTIETPAG 147 Query: 147 EKTYEILQV 155 +IL V Sbjct: 148 SYQVKILNV 156 >gi|322386974|ref|ZP_08060598.1| transcription elongation factor GreA [Streptococcus cristatus ATCC 51100] gi|321269256|gb|EFX52192.1| transcription elongation factor GreA [Streptococcus cristatus ATCC 51100] Length = 187 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I A ++D +++ D + Sbjct: 55 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAVIVDSDSVAKDEV 114 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G Sbjct: 115 AIGKTVTIQEVGETEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIATVETPVG 174 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 175 SYDVKILKV 183 >gi|308047929|ref|YP_003911495.1| transcription elongation factor GreB [Ferrimonas balearica DSM 9799] gi|307630119|gb|ADN74421.1| transcription elongation factor GreB [Ferrimonas balearica DSM 9799] Length = 161 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ ++ EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITKDGWNALEAELKYLWKEERPRVTQSVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ ++ FGA V L E + GDKK Y++VG E DV+ G +SI SP+ Sbjct: 67 SKRMEVLRVVEPDPRQEGKVYFGAWVEL-ENDDGDKKRYRLVGPDEFDVKVGKISIDSPL 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GK + D + V P G++ + I ++ + Sbjct: 126 ARALLGKAVDDEVKVRTPNGDQLFYINEIRY 156 >gi|326798984|ref|YP_004316803.1| transcription elongation factor GreA [Sphingobacterium sp. 21] gi|326549748|gb|ADZ78133.1| transcription elongation factor GreA [Sphingobacterium sp. 21] Length = 157 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 99/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + +G +K+++EL++ + E R I +AI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MADVTYYSKEGLEKLKEELQYLKTEGRAAIARAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ + V L +G YQ+V + EAD++SG + Sbjct: 61 AKIAKLEEVLANARLIDESKLDVTKVLALSIVKLKNTKNGAIMTYQLVSETEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPIA+ L+GK +GD + P G+ EIL++ Sbjct: 121 SVKSPIAQGLLGKSVGDKAEIEVPAGKIELEILEI 155 >gi|237807290|ref|YP_002891730.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187] gi|237499551|gb|ACQ92144.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187] Length = 161 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ K++ EL++ + +RP + +A+SEA A GD SENAEY+ K EL++++ R+ Sbjct: 6 ITRAGWQKLEDELKYLWKVKRPEVTQAVSEAAALGDRSENAEYKEGKRELRSIDR-RLRF 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + ++++ S ++ FGA V L E + GD +Y+IVG E D ++ ++I SP Sbjct: 65 LTKRLDALKIVEYSPQQEGKVYFGAWVEL-ENDQGDIVHYRIVGTDEIDTKNNYITIDSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARALIGK++ D + VN P GEK + I ++ Sbjct: 124 MARALIGKQVDDEVRVNTPSGEKEWFINKI 153 >gi|308234247|ref|ZP_07664984.1| GreA/GreB family elongation factor [Atopobium vaginae DSM 15829] gi|328943529|ref|ZP_08240994.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829] gi|327491498|gb|EGF23272.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829] Length = 157 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+ EL +R+ E+ I++ + EAR +GDLSEN+EY AAKE Q+LNE R+ E+ Sbjct: 8 LTPEGRQKLVDELAYREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSLNESRINEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ A+V++ T ++ G TV L +K G ++ IVG E D +S SP Sbjct: 68 RQILATAKVVE-HTDGELSVSIGTTVELSDKK-GKSISFTIVGTTETDSLEHKISNESPA 125 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155 LIG +GD++S + P G EKTY IL + Sbjct: 126 GAELIGHVVGDVVSFSTPSGKEKTYTILNI 155 >gi|157363383|ref|YP_001470150.1| transcription elongation factor GreA [Thermotoga lettingae TMO] gi|157313987|gb|ABV33086.1| transcription elongation factor GreA [Thermotoga lettingae TMO] Length = 163 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G+++++QEL +Q+ I + I EAR GDLSEN EY AK Q R+ Sbjct: 7 IYLTKEGYEELKQELDSLKQKLMYEISERIKEARELGDLSENTEYDEAKNEQGRIGSRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE I+ +E+I+ ++I+ G+ V + N+G++++ ++V QEAD+ S +S+ S Sbjct: 67 ELEQILNNSEIIE--NTDSNQISVGSYVIIKNLNTGEERSVRLVNPQEADIFSNKISVDS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ RAL+G+++G+++ + AP G YEIL + Sbjct: 125 PVGRALMGRKVGEVVKLKAPAGSVRYEILGI 155 >gi|294673245|ref|YP_003573861.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] gi|294472262|gb|ADE81651.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] Length = 155 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 83/140 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + + P AISEAR GDLSEN EY AAK Q GR++ L Sbjct: 4 MSQEGWDKLVAELKQLETVDLPACKDAISEARDKGDLSENFEYHAAKREQGRLLGRISFL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A VID S + D + + V + N+ K Y I EA+++ G +SI SPI Sbjct: 64 QKVLENARVIDTSLLGKDCVGLLSKVEMTNLNNNAKMTYTIASPHEANLREGKISIKSPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+ K++GD++ V P G Sbjct: 124 AQALLNKKVGDVVEVRVPAG 143 >gi|332828969|gb|EGK01647.1| hypothetical protein HMPREF9455_02058 [Dysgonomonas gadei ATCC BAA-286] Length = 155 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ K+++E+ + E RP I K I+EAR GDLSENAEY AAKE Q L E ++A++ Sbjct: 6 MTEDGYKKLKEEISALESE-RPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEAKIAQM 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +N++ A +I+ + D + V++ + + Y +V + EA+++ +++S+P+ Sbjct: 65 KNLLANARIINEEAIGIDVVQILNKVTIRNTKNNQQMTYTLVAESEANLKENKIAVSTPV 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK++GD+ + P G ++EI+ + Sbjct: 125 AQGLMGKKVGDVAEIKVPSGMMSFEIVNI 153 >gi|270292312|ref|ZP_06198523.1| transcription elongation factor GreA [Streptococcus sp. M143] gi|315613482|ref|ZP_07888390.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC 49296] gi|322375565|ref|ZP_08050077.1| transcription elongation factor GreA [Streptococcus sp. C300] gi|331266043|ref|YP_004325673.1| transcription elongation factor GreA [Streptococcus oralis Uo5] gi|270278291|gb|EFA24137.1| transcription elongation factor GreA [Streptococcus sp. M143] gi|315314478|gb|EFU62522.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC 49296] gi|321279273|gb|EFX56314.1| transcription elongation factor GreA [Streptococcus sp. C300] gi|326682715|emb|CBZ00332.1| transcription elongation factor GreA [Streptococcus oralis Uo5] Length = 160 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI RALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGKVSNESPIGRALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|293365798|ref|ZP_06612504.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|307703334|ref|ZP_07640278.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|291315731|gb|EFE56178.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|307623110|gb|EFO02103.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] Length = 160 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI RALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGKVSNESPIGRALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYEVKILKV 156 >gi|157693131|ref|YP_001487593.1| transcription elongation factor GreA [Bacillus pumilus SAFR-032] gi|189042234|sp|A8FFL6|GREA_BACP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157681889|gb|ABV63033.1| transcription elongation factor [Bacillus pumilus SAFR-032] Length = 157 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 88/130 (67%), Gaps = 1/130 (0%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R +++ I AR++GDLSEN+EY +AKE Q EGR+ L+N+I A++I+ S + Sbjct: 28 KRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITTLDNMIRNAKIIEDEGNS-NI 86 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G TV+ VE G++++Y IVG EAD G +S SPIA++L+GK++ D ++V PG Sbjct: 87 VSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSPIAKSLLGKQVDDKVTVQTPG 146 Query: 146 GEKTYEILQV 155 GE +I+++ Sbjct: 147 GEMFVQIVKI 156 >gi|261344526|ref|ZP_05972170.1| transcription elongation factor GreB [Providencia rustigianii DSM 4541] gi|282567439|gb|EFB72974.1| transcription elongation factor GreB [Providencia rustigianii DSM 4541] Length = 161 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRIRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++ R+ FGA V L E ++G+ + +++VG E D +SI SP+ Sbjct: 67 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNGNIRIFRLVGADEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK + D + V+ PGG+ TY +L++ Sbjct: 126 ARALIGKRVDDEVVVSTPGGQVTYFVLEI 154 >gi|282881506|ref|ZP_06290176.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] gi|281304617|gb|EFA96707.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] Length = 154 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + E PR+ AI+EAR GDLSEN EY AAK Q R+ Sbjct: 4 MSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRIRFK 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A VID S +S D++ + V++ + K Y+IV EA+++ G +SI SPI Sbjct: 64 QKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIHSPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+ K+ GD ++V P G T I +V Sbjct: 124 AQALLDKKQGDEVTVRVPAGTITLHIDEV 152 >gi|332638064|ref|ZP_08416927.1| transcription elongation factor GreA [Weissella cibaria KACC 11862] Length = 161 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 86/142 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G KI++EL E R I I AR++GDLSEN+EYQ+AK+ Q EGR+ Sbjct: 7 FPMTVEGKAKIEEELNTLITETRAEITGRIQIARSFGDLSENSEYQSAKDEQAFVEGRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+N++ A +ID S ++ D ++ G V+ E + + Y IVG EA+ G +S S Sbjct: 67 TLQNMLDNAVIIDSSEIADDEVSVGKKVTFKELPDEEPETYAIVGAVEANPLEGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGG 146 PIA AL+GK++GD + V P G Sbjct: 127 PIAVALMGKKVGDQVEVPLPNG 148 >gi|317505048|ref|ZP_07962995.1| transcription elongation factor GreA [Prevotella salivae DSM 15606] gi|315663826|gb|EFV03546.1| transcription elongation factor GreA [Prevotella salivae DSM 15606] Length = 156 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 89/140 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINKM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D+S +S D + + V + ++ K Y IV + EA+++ G +SI +PI Sbjct: 64 KLDIAEAKIVDVSRLSADAVQIMSKVEMTNMSNKSKMVYTIVSESEANLKQGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ ++GD++ V P G Sbjct: 124 AQGLLNHKVGDVVEVQIPRG 143 >gi|167751089|ref|ZP_02423216.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702] gi|167656007|gb|EDS00137.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702] Length = 156 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IG++LG+ +SV AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGRKLGEEVSVEAPAGVKKYKIVEI 154 >gi|188025404|ref|ZP_02958495.2| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827] gi|188023657|gb|EDU61697.1| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827] Length = 164 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L Sbjct: 10 ITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++ R+ FGA V L E ++ + + +++VG E + +SI SP+ Sbjct: 70 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNENIRIFRLVGADEFNPSKNWISIDSPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK++ D I+VN PGG TY +L++ Sbjct: 129 ARALVGKQVDDEITVNTPGGRVTYTVLEI 157 >gi|47093417|ref|ZP_00231182.1| transcription elongation factor GreA [Listeria monocytogenes str. 4b H7858] gi|300764839|ref|ZP_07074829.1| transcription elongation factor GreA [Listeria monocytogenes FSL N1-017] gi|47018196|gb|EAL08964.1| transcription elongation factor GreA [Listeria monocytogenes str. 4b H7858] gi|300514515|gb|EFK41572.1| transcription elongation factor GreA [Listeria monocytogenes FSL N1-017] Length = 152 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 92/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ + Sbjct: 1 MTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S SPI Sbjct: 61 ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+G + G+ +++ P G+ + +I ++ Sbjct: 121 AKGLLGHKEGEEVTIQTPAGDMSVKIEKI 149 >gi|283787960|ref|YP_003367825.1| transcription elongation factor [Citrobacter rodentium ICC168] gi|282951414|emb|CBG91113.1| transcription elongation factor [Citrobacter rodentium ICC168] Length = 157 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD + ++IVG E + +SI Sbjct: 62 VRYLTKCMEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDTRRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|315925853|ref|ZP_07922059.1| transcription elongation factor GreA [Pseudoramibacter alactolyticus ATCC 23263] gi|315620817|gb|EFV00792.1| transcription elongation factor GreA [Pseudoramibacter alactolyticus ATCC 23263] Length = 165 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ VT +G +K++ EL + R +I+ + AR YGDLSEN+EY AK Q+ E Sbjct: 13 MSEEMIVTQEGLEKMKAELEQLKTVTRYEVIEKLRTARGYGDLSENSEYDEAKNEQSFVE 72 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ I +V++ + D + G+ V + +G YQIVG EA+++ G + Sbjct: 73 GRIKELEHQIHHVKVVE--EVQTDVVGIGSYVKVA--TAGKNLEYQIVGSAEANIKEGKL 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S +SP+ L+G + GD++ + P G TYEIL + Sbjct: 129 SNASPVGEGLMGCQAGDVVEIEVPRGVVTYEILDI 163 >gi|309798572|ref|ZP_07692847.1| transcription elongation factor GreA [Streptococcus infantis SK1302] gi|308117808|gb|EFO55209.1| transcription elongation factor GreA [Streptococcus infantis SK1302] Length = 160 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|225375161|ref|ZP_03752382.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM 16841] gi|225213035|gb|EEG95389.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM 16841] Length = 159 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL+ + R + I EAR GDLSENAEY AAK+ Q E R+ ++ Sbjct: 7 LTYQGLKKLEDELQELKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEDI 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I+ G V +++ ++ Y+IVG EA+ G +S SP+ Sbjct: 67 EKILKNAEVVVEEEVDLDKISIGCNVKILDIEFDEELEYKIVGSTEANSLKGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GDI+ V PGGE Y++L + Sbjct: 127 GKALLGKQVGDIVKVETPGGEFEYKVLSI 155 >gi|156936432|ref|YP_001440348.1| transcription elongation factor GreB [Cronobacter sakazakii ATCC BAA-894] gi|260599707|ref|YP_003212278.1| transcription elongation factor GreB [Cronobacter turicensis z3032] gi|156534686|gb|ABU79512.1| hypothetical protein ESA_04333 [Cronobacter sakazakii ATCC BAA-894] gi|260218884|emb|CBA34239.1| Transcription elongation factor greB [Cronobacter turicensis z3032] Length = 157 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V VE + GD K ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-VENDDGDVKRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE GD+ +V PGGE T+ + Sbjct: 121 DSPMARALLKKEEGDVATVQTPGGEATWYV 150 >gi|306829823|ref|ZP_07463010.1| transcription elongation factor GreA [Streptococcus mitis ATCC 6249] gi|304427834|gb|EFM30927.1| transcription elongation factor GreA [Streptococcus mitis ATCC 6249] Length = 160 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVALDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYQVKILKV 156 >gi|125718595|ref|YP_001035728.1| transcription elongation factor GreA [Streptococcus sanguinis SK36] gi|323351003|ref|ZP_08086660.1| transcription elongation factor GreA [Streptococcus sanguinis VMC66] gi|166200977|sp|A3CPS3|GREA_STRSV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|125498512|gb|ABN45178.1| Transcription elongation factor GreA, putative [Streptococcus sanguinis SK36] gi|322122727|gb|EFX94436.1| transcription elongation factor GreA [Streptococcus sanguinis VMC66] gi|324991292|gb|EGC23225.1| transcription elongation factor GreA [Streptococcus sanguinis SK353] gi|324993649|gb|EGC25568.1| transcription elongation factor GreA [Streptococcus sanguinis SK405] gi|324995039|gb|EGC26952.1| transcription elongation factor GreA [Streptococcus sanguinis SK678] gi|325687131|gb|EGD29154.1| transcription elongation factor GreA [Streptococcus sanguinis SK72] gi|325690939|gb|EGD32939.1| transcription elongation factor GreA [Streptococcus sanguinis SK115] gi|325695125|gb|EGD37027.1| transcription elongation factor GreA [Streptococcus sanguinis SK150] gi|327462918|gb|EGF09239.1| transcription elongation factor GreA [Streptococcus sanguinis SK1] gi|327470408|gb|EGF15864.1| transcription elongation factor GreA [Streptococcus sanguinis SK330] gi|327474522|gb|EGF19927.1| transcription elongation factor GreA [Streptococcus sanguinis SK408] gi|327490078|gb|EGF21866.1| transcription elongation factor GreA [Streptococcus sanguinis SK1058] gi|332359138|gb|EGJ36959.1| transcription elongation factor GreA [Streptococcus sanguinis SK49] gi|332367391|gb|EGJ45124.1| transcription elongation factor GreA [Streptococcus sanguinis SK1059] Length = 160 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|126172390|ref|YP_001048539.1| transcription elongation factor GreB [Shewanella baltica OS155] gi|125995595|gb|ABN59670.1| transcription elongation factor GreB [Shewanella baltica OS155] Length = 169 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +GR+ L Sbjct: 8 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E +GD+ Y+IVG E D + G ++I SP+ Sbjct: 68 VKRLEELKIVDYSPQQEGKIFFGAWFEL-ENEAGDRVRYRIVGKDELDTKLGYITIDSPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V P G K + I Q+ Sbjct: 127 ARALIGKQVDDEVVVQTPSGPKEWYINQI 155 >gi|289522343|ref|ZP_06439197.1| transcription elongation factor GreA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504179|gb|EFD25343.1| transcription elongation factor GreA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 93/153 (60%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D I +T +G+ K++ EL + E R I + + EAR++GDLSENAEY AAKE Q E R Sbjct: 10 DVILMTREGYQKLRAELIKLRSEGRSEISQQLEEARSFGDLSENAEYHAAKEAQAKLEAR 69 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE +++A+VI+ + ++ G V+L + + + Y IV +E D + +S+ Sbjct: 70 IQQLETQLSKAKVIENDQIDTSQVTLGTKVTLKDLDLNREFTYVIVNSEETDPNNHKISV 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SSP+ +A+IGK +GD + AP G + +IL + Sbjct: 130 SSPVGQAIIGKSVGDEVIARAPRGVRRLKILNI 162 >gi|153002701|ref|YP_001368382.1| transcription elongation factor GreB [Shewanella baltica OS185] gi|160877437|ref|YP_001556753.1| transcription elongation factor GreB [Shewanella baltica OS195] gi|217975274|ref|YP_002360025.1| transcription elongation factor GreB [Shewanella baltica OS223] gi|304412250|ref|ZP_07393858.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307306034|ref|ZP_07585779.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|151367319|gb|ABS10319.1| transcription elongation factor GreB [Shewanella baltica OS185] gi|160862959|gb|ABX51493.1| transcription elongation factor GreB [Shewanella baltica OS195] gi|217500409|gb|ACK48602.1| transcription elongation factor GreB [Shewanella baltica OS223] gi|304349285|gb|EFM13695.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306910907|gb|EFN41334.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315269639|gb|ADT96492.1| transcription elongation factor GreB [Shewanella baltica OS678] Length = 167 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +GR+ L Sbjct: 6 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E +GD+ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRLEELKIVDYSPQQEGKIFFGAWFEL-ENEAGDRVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V P G K + I Q+ Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYINQI 153 >gi|223933721|ref|ZP_03625695.1| transcription elongation factor GreA [Streptococcus suis 89/1591] gi|302024344|ref|ZP_07249555.1| transcription elongation factor GreA [Streptococcus suis 05HAS68] gi|330833338|ref|YP_004402163.1| transcription elongation factor [Streptococcus suis ST3] gi|223897602|gb|EEF63989.1| transcription elongation factor GreA [Streptococcus suis 89/1591] gi|292559001|gb|ADE32002.1| Prokaryotic transcription elongation factor GreA [Streptococcus suis GZ1] gi|329307561|gb|AEB81977.1| transcription elongation factor [Streptococcus suis ST3] Length = 160 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I++ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE+++ ++ D + Sbjct: 28 RPEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD + +S SPI ALIGK+ GD+ ++ P G Sbjct: 88 AIGKTVTVQEVGETEEEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|332358236|gb|EGJ36064.1| transcription elongation factor GreA [Streptococcus sanguinis SK355] Length = 160 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEIGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|261417196|ref|YP_003250879.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373652|gb|ACX76397.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp. succinogenes S85] Length = 169 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 88/151 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ EL Sbjct: 19 ISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRLREL 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ SPI Sbjct: 79 DRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMKSPI 138 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 AL GK+ GD + V AP G+ YEIL+V + Sbjct: 139 GEALQGKKAGDTVEVQAPRGKIVYEILEVNY 169 >gi|206895281|ref|YP_002247422.1| transcription elongation factor GreA [Coprothermobacter proteolyticus DSM 5265] gi|206737898|gb|ACI16976.1| transcription elongation factor GreA [Coprothermobacter proteolyticus DSM 5265] Length = 163 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 100/152 (65%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ KI +EL++ ++ +R + + I EARA GDLSEN+E++AAKE Q L E R+A L Sbjct: 10 LTEEGYKKILEELKYLKEVKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEERIARL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD-QEADVQSGLVSISSP 125 E ++ A V+ ++ D+++ G V ++++++G ++++ IVG+ +E D SG +S SP Sbjct: 70 ETLVYNARVVKAEDLALDQVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKISSKSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156 + L+G++ GD + + G K YEIL ++ Sbjct: 130 LGSRLLGRKRGDRVEIKLRNGSKAVYEILDIV 161 >gi|322377004|ref|ZP_08051497.1| transcription elongation factor GreA [Streptococcus sp. M334] gi|321282811|gb|EFX59818.1| transcription elongation factor GreA [Streptococcus sp. M334] Length = 160 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|282882521|ref|ZP_06291142.1| transcription elongation factor GreA [Peptoniphilus lacrimalis 315-B] gi|281297663|gb|EFA90138.1| transcription elongation factor GreA [Peptoniphilus lacrimalis 315-B] Length = 157 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 88/153 (57%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A Sbjct: 5 IFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVEERIA 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +S S Sbjct: 65 KLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ LIG ++GDI + P G Y++ + + Sbjct: 125 PVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157 >gi|291295486|ref|YP_003506884.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279] gi|290470445|gb|ADD27864.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279] Length = 159 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 3/159 (1%) Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M DK PV T++G +++QEL + + E+ +I + + A A GDL ENA Y A+ Sbjct: 1 MADKKPVYLTAEGKARLEQELAYLKTEKMQQIAEEMGRAIAEGDLRENAGYDEARRAMWQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N R+AELE+I++R ++++ + G TV+L E +G + + +VG EADV SG Sbjct: 61 NNSRIAELEDILSRVQIVESGNGIPTEVQIGVTVAL-ETATGQRMSVTMVGSHEADVFSG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ +AL+GK++GD + V P G +TY ++++++ Sbjct: 120 KISNESPLGQALMGKKVGDEVQVKGPKGSQTYVVVELVY 158 >gi|261367899|ref|ZP_05980782.1| transcription elongation factor GreA [Subdoligranulum variabile DSM 15176] gi|282570711|gb|EFB76246.1| transcription elongation factor GreA [Subdoligranulum variabile DSM 15176] Length = 162 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ VT +G+ K++Q+L + +R + I AR YGDLSENAEY AAKE Q + E Sbjct: 1 MAKEVVVTREGYKKLEQDLNELRTVKRKEVADKIKVARGYGDLSENAEYDAAKEEQAIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS-LVEKNSGDK-KNYQIVGDQEADVQSG 118 R+A+LE + A +ID S +S D ++ G V L E + D+ + Y I G EAD+ Sbjct: 61 ARIADLEATLKVARIIDDSELSNDTVSIGMRVKILAEGDDPDEAEEYDITGSTEADMNLN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 +S SP+ ALIG + GD + V P G Y++L V Sbjct: 121 RISDESPVGAALIGHKAGDEVDVTLPNGSIIVYKVLAV 158 >gi|116493088|ref|YP_804823.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] gi|116103238|gb|ABJ68381.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] Length = 154 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G+ KI QE+ +Q RP +IKA+++ARA GDLSENAEY AAK EGR+ Sbjct: 6 VPMTPSGYAKINQEIDDLKQT-RPALIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ I+ +++I + S +I G+ V + + D+ Y+IVG EADV + +S S Sbjct: 65 YLQRQISYSKIIQNTNHS--KIDLGSIVKMRFVDDHDEITYEIVGKHEADVVNNKISFQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ + DI+ V AP + EIL++ Sbjct: 123 PLGSALMHHKTHDIVLVTAPDEQYQVEILEI 153 >gi|302327668|gb|ADL26869.1| transcription elongation factor, GreA/GreB family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 155 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 88/151 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ EL Sbjct: 5 ISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRLREL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ SPI Sbjct: 65 DRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMKSPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 AL GK+ GD + V AP G+ YEIL+V + Sbjct: 125 GEALQGKKAGDTVEVQAPRGKIVYEILEVNY 155 >gi|241888529|ref|ZP_04775837.1| transcription elongation factor GreA [Gemella haemolysans ATCC 10379] gi|241864796|gb|EER69170.1| transcription elongation factor GreA [Gemella haemolysans ATCC 10379] Length = 162 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+ Sbjct: 11 MTQEGYDKLVEELEHYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRILEM 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I++ S I G V+ E G + Y+IVG EA+ +S SP+ Sbjct: 71 EQMIRYAVIIELDGKSS-TIRLGNKVTYQELPDGLTETYKIVGSAEANPFEFKISNESPV 129 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GKE+GD+ V+ P G Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149 >gi|94967583|ref|YP_589631.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] gi|94549633|gb|ABF39557.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 88/145 (60%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+QQE+ + E + + + +A A GDLSENAEY AK+ Q R+ +++ + Sbjct: 8 KLQQEIEVLEHELQHELPAELKKAVAMGDLSENAEYHMAKQRQEFVRARLGQMKRRMAEL 67 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +++++ + DR A G+T+ + + +K +Y++V +E+DV GL+S +SPI RAL+ K Sbjct: 68 SLVNMANIPKDRAAIGSTLKVHDLTKDEKIDYKLVTSEESDVSKGLISTTSPIGRALLNK 127 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 GD++ V P G++ EIL++ I Sbjct: 128 REGDVVEVVTPAGKRELEILKLTTI 152 >gi|150021255|ref|YP_001306609.1| transcription elongation factor GreA [Thermosipho melanesiensis BI429] gi|166201184|sp|A6LMS3|GREA_THEM4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149793776|gb|ABR31224.1| transcription elongation factor GreA [Thermosipho melanesiensis BI429] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 2/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R+ Sbjct: 6 IYLTKEGYEKLKTELDNLKQKLMFEIAERIKEARELGDLSENSEYQEAKNEQGRIAARIN 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELEN++++AEVI+ + + I G V + +G++K QIV EADV + +S S Sbjct: 66 ELENMLSKAEVIE--GLDTNVINIGNWVIIKNLETGEEKTIQIVTPHEADVFNNKISFES 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI R L+GK++G+++ + AP G Y+IL + Sbjct: 124 PIGRILVGKKVGEVVKIKAPKGVFKYQILGI 154 >gi|50364917|ref|YP_053342.1| transcription elongation factor [Mesoplasma florum L1] gi|81391980|sp|Q6F215|GREA_MESFL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|50363473|gb|AAT75458.1| transcription elongation factor [Mesoplasma florum L1] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 3/147 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MAKEIILTQEGIEELKHELKHLLEVVRPQVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I++A++I+ S+ + I G+ V + N+ + +IVG EAD GL+ Sbjct: 61 ARIKELETMISKAKLIEDSSTTDGAIKIGSKVKFIMLNTKQTREVKIVGAVEADPFKGLI 120 Query: 121 SISSPIARALIGKELGDIISV---NAP 144 S SPIA+A++GK++G+ + V NAP Sbjct: 121 SNESPIAKAILGKKVGESVEVKDINAP 147 >gi|307706015|ref|ZP_07642838.1| transcription elongation factor greA [Streptococcus mitis SK564] gi|307620434|gb|EFN99547.1| transcription elongation factor greA [Streptococcus mitis SK564] Length = 160 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVADDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|299135877|ref|ZP_07029061.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298602001|gb|EFI58155.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 89/144 (61%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 ++++++ + E + I +A A GDLSENAEY +AK+ Q R+ +L+ + Sbjct: 8 LEEQIKALEYELTTELPAEIKKAVALGDLSENAEYHSAKQRQEFVNARLGQLKKRMGELA 67 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 ++++ + D++ FG+T+ + + ++ Y++V +EADV GL+S +SPI RAL+GKE Sbjct: 68 MVNLDNIPRDKVGFGSTIVVFDSTKDEEITYKLVTSEEADVTKGLISTTSPIGRALLGKE 127 Query: 135 LGDIISVNAPGGEKTYEILQVLWI 158 +GD +V P G++ E+L++ I Sbjct: 128 IGDTATVVTPNGKRELEVLKLTTI 151 >gi|300814578|ref|ZP_07094829.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511197|gb|EFK38446.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 157 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 88/153 (57%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A Sbjct: 5 IFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVEERIA 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +S S Sbjct: 65 KLEMMARNAKVIDEKDLNHDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ LIG ++GDI + P G Y++ + + Sbjct: 125 PVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157 >gi|288803422|ref|ZP_06408854.1| transcription elongation factor GreA [Prevotella melaninogenica D18] gi|302345970|ref|YP_003814323.1| transcription elongation factor GreA [Prevotella melaninogenica ATCC 25845] gi|288334032|gb|EFC72475.1| transcription elongation factor GreA [Prevotella melaninogenica D18] gi|302149498|gb|ADK95760.1| transcription elongation factor GreA [Prevotella melaninogenica ATCC 25845] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 92/146 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AEL Sbjct: 4 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +PI Sbjct: 64 KMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTNAKMKYTIVSETEANLKQNKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+ L+ K++GD + + P G T I Sbjct: 124 AQGLLNKKVGDEVEITIPRGTITLRI 149 >gi|148270136|ref|YP_001244596.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1] gi|281412522|ref|YP_003346601.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10] gi|166201192|sp|A5ILE7|GREA_THEP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|147735680|gb|ABQ47020.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1] gi|281373625|gb|ADA67187.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ++L+G+++GD++ V AP G + Y+++ V+ Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVMAVM 154 >gi|332163327|ref|YP_004299904.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667557|gb|ADZ44201.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862980|emb|CBX73113.1| transcription elongation factor greB [Yersinia enterocolitica W22703] Length = 165 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE SG+++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVQ-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|282880637|ref|ZP_06289343.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] gi|281305532|gb|EFA97586.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] Length = 155 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 87/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D+S +S + + + V + + K Y IV + EAD+++G +SI +PI Sbjct: 64 KLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 124 AQGLLNKKVGDEVEIKIPAG 143 >gi|226327577|ref|ZP_03803095.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198] gi|225204103|gb|EEG86457.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198] Length = 159 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITRDGWYALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V+L E + + K +++VG E D +SI SP+ Sbjct: 67 SKRLDELKIVDPDPRQEGKVYFGAWVTL-EDDDENVKTFRLVGPDEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ISV PGGE Y +L + Sbjct: 126 ARALIGKQVDDEISVQTPGGEVNYCVLSI 154 >gi|307706224|ref|ZP_07643041.1| transcription elongation factor greA [Streptococcus mitis SK321] gi|307708401|ref|ZP_07644867.1| transcription elongation factor GreA [Streptococcus mitis NCTC 12261] gi|307615500|gb|EFN94707.1| transcription elongation factor GreA [Streptococcus mitis NCTC 12261] gi|307618414|gb|EFN97564.1| transcription elongation factor greA [Streptococcus mitis SK321] Length = 160 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVADDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|325696362|gb|EGD38253.1| transcription elongation factor GreA [Streptococcus sanguinis SK160] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +I++V Sbjct: 148 SYDVKIIEV 156 >gi|262340920|ref|YP_003283775.1| transcription elongation factor GreA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272257|gb|ACY40165.1| transcription elongation factor GreA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+Q+E+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+L Sbjct: 7 ITKEGLKKLQKEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQGFLEMNIAKL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A +ID + ++ R++ +TV + G ++ Y +V + EAD++SG +SI++PI Sbjct: 67 KKKLSNARIIDGTQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPI 126 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + L+GK++G I + P YEIL++ + Sbjct: 127 STGLLGKQVGQIAHIKLPNKMILDYEILEIAF 158 >gi|15644454|ref|NP_229506.1| transcription elongation factor GreA [Thermotoga maritima MSB8] gi|7387720|sp|Q9X232|GREA_THEMA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|4982283|gb|AAD36773.1|AE001810_12 transcription elongation factor, greA/greB family [Thermotoga maritima MSB8] Length = 156 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ++L+G+++GD++ V AP G + Y+++ V+ Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAVM 154 >gi|39996303|ref|NP_952254.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA] gi|39983183|gb|AAR34577.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA] gi|298505313|gb|ADI84036.1| transcription elongation factor GreB [Geobacter sulfurreducens KN400] Length = 161 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL W +EERPR+ + +++A A GD SENAEY K+ + R+ L Sbjct: 8 ITPEGAKKLRTELTWLWKEERPRVTQGVADAAAEGDRSENAEYIYGKKRLREIDRRIRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + D++ FGA V L E GD+ Y++VG E D G +S+ SP+ Sbjct: 68 TQRLDALTVVDAPPPATDKVFFGAWVRL-ENEEGDEVVYRVVGPDETDAAKGHISLDSPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ++L+G+ GD + V P GE + +L+V Sbjct: 127 GKSLLGRREGDEVHVRRPAGEAVFTVLEV 155 >gi|288933209|ref|YP_003437268.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|290512013|ref|ZP_06551381.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55] gi|288887938|gb|ADC56256.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|289775803|gb|EFD83803.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55] Length = 157 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 96/156 (61%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDTKRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|51891618|ref|YP_074309.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51855307|dbj|BAD39465.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + ++ +G ++Q+EL + + +R + + + EAR+YGDLSEN+EY A+ Q EGR+A Sbjct: 7 VVLSPEGLQQLQEELDYLRNVKRKEVAERLKEARSYGDLSENSEYDDARNEQAFVEGRIA 66 Query: 65 ELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 LEN + A ++D S + +I G+TV L + GD Y IVG EAD +S Sbjct: 67 MLENTLRNAVIMDESEDEAEAGKIRLGSTVVLKDLEYGDLLEYTIVGTVEADPAKNKISN 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +A++G+ G+++ V AP G YEI+ V Sbjct: 127 ESPVGKAIMGRTKGEVVVVEAPAGRIEYEIVDV 159 >gi|327462009|gb|EGF08338.1| transcription elongation factor GreA [Streptococcus sanguinis SK1057] gi|328946834|gb|EGG40971.1| transcription elongation factor GreA [Streptococcus sanguinis SK1087] gi|332362238|gb|EGJ40038.1| transcription elongation factor GreA [Streptococcus sanguinis SK1056] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +I++V Sbjct: 148 SYDVKIIKV 156 >gi|307704459|ref|ZP_07641369.1| transcription elongation factor greA [Streptococcus mitis SK597] gi|307621979|gb|EFO01006.1| transcription elongation factor greA [Streptococcus mitis SK597] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 84/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|330503584|ref|YP_004380453.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01] gi|328917870|gb|AEB58701.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01] Length = 165 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 92/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+ +E G++ Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEKLKVVSEKPSDPNKVYFGAWVT-IEDEDGEQSRYRIVGPDELDLKQGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V++P GEKT I+++ Sbjct: 134 ARALVGKELDAEVRVHSPSGEKTCYIVEI 162 >gi|206575923|ref|YP_002236222.1| transcription elongation factor GreB [Klebsiella pneumoniae 342] gi|206564981|gb|ACI06757.1| transcription elongation factor GreB [Klebsiella pneumoniae 342] Length = 157 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QE+ + + ERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQEMDYLWRHERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDTKRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|282878396|ref|ZP_06287184.1| putative transcription elongation factor GreA [Prevotella buccalis ATCC 35310] gi|281299474|gb|EFA91855.1| putative transcription elongation factor GreA [Prevotella buccalis ATCC 35310] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 86/140 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDNLVAELTRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D+S +S D + + V + + K Y IV + EAD+++G +SI +PI Sbjct: 64 KLTIAEAKIVDVSRLSADTVQILSKVEMTNMKTKSKMVYTIVSESEADLKAGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K+ GD + + P G Sbjct: 124 AQGLLNKKEGDEVDIKIPAG 143 >gi|304383994|ref|ZP_07366450.1| transcription elongation factor GreA [Prevotella marshii DSM 16973] gi|304334886|gb|EFM01160.1| transcription elongation factor GreA [Prevotella marshii DSM 16973] Length = 202 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 90/140 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + ERP+I AI+EAR GDLSEN+EY+AAKE Q E R+ ++ Sbjct: 51 MSQEGYDKMIAELQRLEAVERPKISAAIAEARDKGDLSENSEYEAAKEAQAHLEDRINKM 110 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D S +S + + + V + + K Y IV + EA+++ G ++I++PI Sbjct: 111 KRTIAEAKIVDTSRLSNEAVQILSKVEMTNLGNKAKMTYTIVSENEANLKEGKIAITTPI 170 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 171 AQGLLNKKVGDEVEIAIPRG 190 >gi|331002785|ref|ZP_08326299.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413274|gb|EGG92642.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon 107 str. F0167] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 8 LTYEGLKNLEEELQDLKVNKRKEIAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ AEV+ + D I G V +++K+ D+ +++IVG EAD +G +S SP+ Sbjct: 68 ENLLKNAEVVVEDEVDLDTIGIGCMVKILDKDFDDELDFKIVGSTEADSLAGKISNESPL 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK +G+ V G Y +L++ Sbjct: 128 GKALLGKRIGETAVVETQAGVSEYMVLEI 156 >gi|318607818|emb|CBY29316.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica Y11] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE SG+++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVQ-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEVTYWILEI 154 >gi|170724521|ref|YP_001758547.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908] gi|169809868|gb|ACA84452.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908] Length = 161 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D S ++ FGA V L E SGD Y+IVG E D + G ++I SP+ Sbjct: 66 VKRVEDLTIVDYSPQQEGKVFFGAWVEL-ENESGDVVQYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D + V P G K + + Sbjct: 125 ARALIGKQVDDEVVVKTPSGAKEWYV 150 >gi|302876582|ref|YP_003845215.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|307687257|ref|ZP_07629703.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302579439|gb|ADL53451.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] Length = 158 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K++ EL + + R I + I A ++GDLSEN+EY AK Q EG++ Sbjct: 5 KYVMTYEGLKKLEDELEFLKTVRRNDIKEKIKVALSFGDLSENSEYDEAKNEQAFVEGKI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A+LE ++ + V+D + + GD + G V + + +SGD Y IVG EAD +S Sbjct: 65 AQLEAMLKKVTVVDETDIQGDIVGIGTKVKVKDIDSGDVDVYSIVGSAEADPLEFKISHE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +A++GK++G+ + V P G EIL++ Sbjct: 125 SPVGKAMLGKKVGETVDVAVPDGTIKLEILEI 156 >gi|218133837|ref|ZP_03462641.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC 43243] gi|217991212|gb|EEC57218.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC 43243] Length = 160 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL+ + R + + + EARA GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYTGLKQLEDELQQLKVVRRQEVAEKLKEARAQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ENI+ AEV+ + + D+I G V L + ++ + IVG EA+ +S SP+ Sbjct: 69 ENILKNAEVVVETEVDSDKINIGCIVKLFDFEFDEELEFSIVGSTEANSLKNKISNESPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++GD+I V GE Y++L + Sbjct: 129 GSALIGKKVGDVIKVETQMGEVEYKVLSI 157 >gi|28209977|ref|NP_780921.1| transcription elongation factor GreA [Clostridium tetani E88] gi|28202412|gb|AAO34858.1| transcription elongation factor greA [Clostridium tetani E88] Length = 186 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+ Sbjct: 32 KYVMTYEGVKKLEEELEYLKTVKRKEITQKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 91 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + M D + G+ V + + D++ + IVG EAD +S Sbjct: 92 IQLENMLKNATIVDENEMPADTVNVGSIVKVKDFEFNDEEEFIIVGSAEADPLENKISNE 151 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIGK+ G+ + V P G YEI+ V Sbjct: 152 SPVGKALIGKKAGEKVEVIVPDGISKYEIISV 183 >gi|303230991|ref|ZP_07317734.1| transcription elongation factor GreA [Veillonella atypica ACS-049-V-Sch6] gi|302514373|gb|EFL56372.1| transcription elongation factor GreA [Veillonella atypica ACS-049-V-Sch6] Length = 157 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q EG ++EL Sbjct: 9 LTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAFIEGYISEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I A++ID ST GD ++ G+ V++++ D+ Y IVG EAD + +S SP+ Sbjct: 69 ENKINTAKIIDEST-KGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK GD + V+ P G T+++L + Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156 >gi|15903412|ref|NP_358962.1| transcription elongation factor GreA [Streptococcus pneumoniae R6] gi|182684472|ref|YP_001836219.1| transcription elongation factor GreA [Streptococcus pneumoniae CGSP14] gi|15459017|gb|AAL00173.1| Transcription elongation factor GreA [Streptococcus pneumoniae R6] gi|182629806|gb|ACB90754.1| transcription elongation factor GreA [Streptococcus pneumoniae CGSP14] Length = 163 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 31 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 90 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 91 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 150 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 151 SYDVKILKV 159 >gi|160932785|ref|ZP_02080174.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753] gi|156867859|gb|EDO61231.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753] Length = 158 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 90/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T +G ++QEL + + E R I + I A ++GDLSEN+EY AK Q + E R+ Sbjct: 5 QVLLTDEGLHNLEQELEFLKTERRKEIAEKIKVALSFGDLSENSEYDEAKNDQAMVEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A++E+++ ++ID ++ + I G+ V + + + YQIVG EAD +G +S Sbjct: 65 ADIESMLKNVKIIDQDELTTELIHIGSKVQVKDVEFDEVCTYQIVGSSEADPSNGRISDE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + L+G ++G+ + + P G YEIL + Sbjct: 125 SPVGKGLLGHKVGETVEIETPAGVMQYEILGI 156 >gi|238019652|ref|ZP_04600078.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748] gi|237863693|gb|EEP64983.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748] Length = 157 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL Sbjct: 9 LTAEGLKKLEEELMYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+ Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK GD + V+ P G T+++L + Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156 >gi|116516490|ref|YP_816807.1| transcription elongation factor GreA [Streptococcus pneumoniae D39] gi|148984861|ref|ZP_01818114.1| transcription elongation factor GreA [Streptococcus pneumoniae SP3-BS71] gi|148992595|ref|ZP_01822263.1| transcription elongation factor GreA [Streptococcus pneumoniae SP9-BS68] gi|148997422|ref|ZP_01825027.1| transcription elongation factor GreA [Streptococcus pneumoniae SP11-BS70] gi|149003267|ref|ZP_01828163.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS69] gi|149007576|ref|ZP_01831211.1| transcription elongation factor GreA [Streptococcus pneumoniae SP18-BS74] gi|149011752|ref|ZP_01832948.1| transcription elongation factor GreA [Streptococcus pneumoniae SP19-BS75] gi|149021786|ref|ZP_01835793.1| transcription elongation factor GreA [Streptococcus pneumoniae SP23-BS72] gi|168484934|ref|ZP_02709879.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1873-00] gi|168487712|ref|ZP_02712220.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1087-00] gi|168488822|ref|ZP_02713021.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae SP195] gi|168491591|ref|ZP_02715734.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC0288-04] gi|168493418|ref|ZP_02717561.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC3059-06] gi|168577325|ref|ZP_02723096.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae MLV-016] gi|194397327|ref|YP_002038148.1| transcription elongation factor GreA [Streptococcus pneumoniae G54] gi|221232229|ref|YP_002511382.1| transcription elongation factor [Streptococcus pneumoniae ATCC 700669] gi|225854961|ref|YP_002736473.1| transcription elongation factor GreA [Streptococcus pneumoniae JJA] gi|225857142|ref|YP_002738653.1| transcription elongation factor GreA [Streptococcus pneumoniae P1031] gi|225859274|ref|YP_002740784.1| transcription elongation factor GreA [Streptococcus pneumoniae 70585] gi|225861350|ref|YP_002742859.1| transcription elongation factor GreA [Streptococcus pneumoniae Taiwan19F-14] gi|237650199|ref|ZP_04524451.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI 1974] gi|237820918|ref|ZP_04596763.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI 1974M2] gi|298230257|ref|ZP_06963938.1| transcription elongation factor GreA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254453|ref|ZP_06978039.1| transcription elongation factor GreA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503253|ref|YP_003725193.1| transcription elongation factor GreA [Streptococcus pneumoniae TCH8431/19A] gi|303255302|ref|ZP_07341372.1| transcription elongation factor GreA [Streptococcus pneumoniae BS455] gi|303260142|ref|ZP_07346114.1| transcription elongation factor GreA [Streptococcus pneumoniae SP-BS293] gi|303262532|ref|ZP_07348473.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS292] gi|303264934|ref|ZP_07350849.1| transcription elongation factor GreA [Streptococcus pneumoniae BS397] gi|303267244|ref|ZP_07353108.1| transcription elongation factor GreA [Streptococcus pneumoniae BS457] gi|303269554|ref|ZP_07355317.1| transcription elongation factor GreA [Streptococcus pneumoniae BS458] gi|307068161|ref|YP_003877127.1| transcription elongation factor [Streptococcus pneumoniae AP200] gi|307127722|ref|YP_003879753.1| transcription elongation factor GreA [Streptococcus pneumoniae 670-6B] gi|73621019|sp|Q8DP42|GREA_STRR6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122277695|sp|Q04HS9|GREA_STRP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238690838|sp|B5E681|GREA_STRP4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799568|sp|C1C8A8|GREA_STRP7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799569|sp|B8ZLB8|GREA_STRPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799571|sp|C1CFA2|GREA_STRZJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799572|sp|C1CLL5|GREA_STRZP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799573|sp|C1CSD7|GREA_STRZT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116077066|gb|ABJ54786.1| transcription elongation factor GreA [Streptococcus pneumoniae D39] gi|147756477|gb|EDK63518.1| transcription elongation factor GreA [Streptococcus pneumoniae SP11-BS70] gi|147758727|gb|EDK65724.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS69] gi|147760935|gb|EDK67905.1| transcription elongation factor GreA [Streptococcus pneumoniae SP18-BS74] gi|147764183|gb|EDK71115.1| transcription elongation factor GreA [Streptococcus pneumoniae SP19-BS75] gi|147922883|gb|EDK73999.1| transcription elongation factor GreA [Streptococcus pneumoniae SP3-BS71] gi|147928612|gb|EDK79626.1| transcription elongation factor GreA [Streptococcus pneumoniae SP9-BS68] gi|147930022|gb|EDK81009.1| transcription elongation factor GreA [Streptococcus pneumoniae SP23-BS72] gi|172041918|gb|EDT49964.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1873-00] gi|183569530|gb|EDT90058.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1087-00] gi|183572632|gb|EDT93160.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae SP195] gi|183574144|gb|EDT94672.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC0288-04] gi|183576363|gb|EDT96891.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC3059-06] gi|183577158|gb|EDT97686.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae MLV-016] gi|194356994|gb|ACF55442.1| transcription elongation factor GreA [Streptococcus pneumoniae G54] gi|220674690|emb|CAR69263.1| transcription elongation factor [Streptococcus pneumoniae ATCC 700669] gi|225720296|gb|ACO16150.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae 70585] gi|225722497|gb|ACO18350.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae JJA] gi|225724300|gb|ACO20152.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae P1031] gi|225726751|gb|ACO22602.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae Taiwan19F-14] gi|298238848|gb|ADI69979.1| transcription elongation factor GreA [Streptococcus pneumoniae TCH8431/19A] gi|301794529|emb|CBW36971.1| transcription elongation factor [Streptococcus pneumoniae INV104] gi|301800352|emb|CBW32982.1| transcription elongation factor [Streptococcus pneumoniae OXC141] gi|301802237|emb|CBW34988.1| transcription elongation factor [Streptococcus pneumoniae INV200] gi|302597670|gb|EFL64746.1| transcription elongation factor GreA [Streptococcus pneumoniae BS455] gi|302636249|gb|EFL66743.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS292] gi|302638639|gb|EFL69102.1| transcription elongation factor GreA [Streptococcus pneumoniae SP-BS293] gi|302640898|gb|EFL71282.1| transcription elongation factor GreA [Streptococcus pneumoniae BS458] gi|302643209|gb|EFL73492.1| transcription elongation factor GreA [Streptococcus pneumoniae BS457] gi|302645453|gb|EFL75685.1| transcription elongation factor GreA [Streptococcus pneumoniae BS397] gi|306409698|gb|ADM85125.1| Transcription elongation factor [Streptococcus pneumoniae AP200] gi|306484784|gb|ADM91653.1| transcription elongation factor GreA [Streptococcus pneumoniae 670-6B] gi|327389702|gb|EGE88047.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA04375] gi|332072310|gb|EGI82793.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA17570] gi|332073853|gb|EGI84331.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA41301] gi|332074270|gb|EGI84747.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA17545] gi|332199561|gb|EGJ13636.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA41317] gi|332200079|gb|EGJ14152.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA47368] gi|332200957|gb|EGJ15028.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA47901] Length = 160 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|312134579|ref|YP_004001917.1| grea/greb family elongation factor [Caldicellulosiruptor owensensis OL] gi|311774630|gb|ADQ04117.1| GreA/GreB family elongation factor [Caldicellulosiruptor owensensis OL] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 92/152 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +E+D + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIVEYSIVGSKESDPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK++GD++ V P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVIVPAGKFRYKILEI 160 >gi|170288918|ref|YP_001739156.1| transcription elongation factor GreA [Thermotoga sp. RQ2] gi|238688841|sp|B1LAX5|GREA_THESQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|170176421|gb|ACB09473.1| transcription elongation factor GreA [Thermotoga sp. RQ2] Length = 156 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 99/155 (63%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S D I G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSE-ENDEITLGKWVVIRNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ++L+G+++GD++ V AP G + Y+++ V+ Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAVM 154 >gi|116333642|ref|YP_795169.1| transcription elongation factor [Lactobacillus brevis ATCC 367] gi|116098989|gb|ABJ64138.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] Length = 132 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +RP++I I AR+YGDLSEN+EY++AK+ Q++ E R++ +E ++ A++ID D Sbjct: 3 QRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKDE 62 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 I G V+ E + + + Y IVG EAD SG +S SPIA+ L+G +G+ ++ PG Sbjct: 63 ITVGKKVTFQEDDD-EPEEYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTPG 121 Query: 146 GEKTYEILQV 155 G+ T +++ V Sbjct: 122 GDMTVKVIAV 131 >gi|123444179|ref|YP_001008149.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091140|emb|CAL14023.1| transcription elongation factor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE SG+++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL + Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILDI 154 >gi|288801019|ref|ZP_06406475.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299 str. F0039] gi|288331953|gb|EFC70435.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299 str. F0039] Length = 155 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 89/140 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDKLVAELKHLESVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINKI 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A+++D S +S D + + V + + K Y IV + EA+++ G ++I++PI Sbjct: 64 KVSLSEAKIVDTSLLSADAVQIMSKVVMTNLGNNAKMTYTIVSESEANLKEGKLAITTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 124 AQGLLNKKVGDEVEIKIPNG 143 >gi|42522667|ref|NP_968047.1| hypothetical protein Bd1119 [Bdellovibrio bacteriovorus HD100] gi|39573863|emb|CAE79040.1| greB [Bdellovibrio bacteriovorus HD100] Length = 183 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ E ERP++++ ++ A + GD SENA+YQ K + R+ L Sbjct: 33 ITPEGLAKLKAEYHALMHVERPKLVEVVAWAASNGDRSENADYQYGKRRLREIDRRVHFL 92 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I AE++D M G + F ATV+LV ++ GD+ YQIVG+ E D ++G +S SP+ Sbjct: 93 TKRIEDAELVDPKQMKGTTVLFSATVTLVNED-GDEVVYQIVGEDEFDPKAGKISWKSPV 151 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK+LGD + + P GE+ I V Sbjct: 152 ARALLGKKLGDEVRIIKPAGEEFVTIENV 180 >gi|294138934|ref|YP_003554912.1| transcription elongation factor GreB [Shewanella violacea DSS12] gi|293325403|dbj|BAJ00134.1| transcription elongation factor GreB [Shewanella violacea DSS12] Length = 161 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +GR+ L Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E +G+ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRVEELKIVDYSPQQEGKVFFGAWVEL-ENEAGEVVQYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 +RALIGK++ D I V P G K + + Sbjct: 125 SRALIGKQVDDEIVVQTPSGAKEWYV 150 >gi|307128689|ref|YP_003880719.1| putative transcription elongation factor GreB [Candidatus Sulcia muelleri CARI] gi|306483151|gb|ADM90021.1| putative transcription elongation factor GreB [Candidatus Sulcia muelleri CARI] Length = 158 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 83/122 (68%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ER +IIKAISEAR GDLSEN+EY AAKE Q + E ++ L+ ++ +I+IS +S + Sbjct: 26 ERKKIIKAISEARDKGDLSENSEYDAAKEAQKILELKIFNLKLKLSNTRLIEISKISTSQ 85 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ V + ++G+ +NY +V + E++++ +SI+SPIA LIGK++GDIIS+ P Sbjct: 86 VSIFTKVKIKNIDNGNYQNYTLVPESESNIKKNKISINSPIAIGLIGKKIGDIISIKLPN 145 Query: 146 GE 147 + Sbjct: 146 NK 147 >gi|300727402|ref|ZP_07060811.1| transcription elongation factor GreA [Prevotella bryantii B14] gi|299775282|gb|EFI71881.1| transcription elongation factor GreA [Prevotella bryantii B14] Length = 155 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 90/140 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL++ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDKLVAELKYLESVERPKASAAIAEAADKGDLSENSEYDAAKENQAHLEAKINQI 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I++A+++D+S +S D + TV + + K Y IV + EAD++SG +SI +PI Sbjct: 64 KMTISQAKIVDMSRLSADAVQIMTTVEMTNLGNNAKMKYTIVSESEADLKSGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + P G Sbjct: 124 AQGLLNKKVGDTAEIKIPRG 143 >gi|300857282|ref|YP_003782266.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300437397|gb|ADK17164.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 151 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 88/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I++ I A ++GDLSEN+EY +AK Q EGR+ +L Sbjct: 1 MTYEGITKLEDELEYLKTAKRREIMEKIKVALSFGDLSENSEYDSAKNEQAFVEGRIVQL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A ++D + + G+ V + + + ++ Y IVG EAD + +S SP+ Sbjct: 61 ENMLKNATIVDEEEIPPGVVGIGSIVKVRDYDFNEEVEYLIVGSAEADPINNKISNESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK+ GDI+ V P G YEIL + Sbjct: 121 GKGLVGKKAGDIVEVQVPDGVSKYEILSI 149 >gi|125975378|ref|YP_001039288.1| transcription elongation factor GreA [Clostridium thermocellum ATCC 27405] gi|256005475|ref|ZP_05430437.1| transcription elongation factor GreA [Clostridium thermocellum DSM 2360] gi|281419339|ref|ZP_06250354.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|166200659|sp|A3DJG6|GREA_CLOTH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|125715603|gb|ABN54095.1| transcription elongation factor GreA [Clostridium thermocellum ATCC 27405] gi|255990530|gb|EEU00650.1| transcription elongation factor GreA [Clostridium thermocellum DSM 2360] gi|281406959|gb|EFB37222.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|316939493|gb|ADU73527.1| transcription elongation factor GreA [Clostridium thermocellum DSM 1313] Length = 159 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 93/152 (61%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T +G K++QEL + +R + + I +A ++GD+SEN+EY AK Q EGR+ Sbjct: 6 EVVLTYEGLQKLEQELENLKTVKRREVAERIKQALSFGDISENSEYDEAKNEQAYIEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A+VID + D ++ G+ V +++ ++ Y IVG EAD +S Sbjct: 66 FQLENMLKNAKVIDEEDIQTDVVSIGSKVKVLDMEFDEEVEYYIVGSTEADPSQYKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIG ++GDI+ V P G ++IL++ Sbjct: 126 SPVGKALIGGKIGDIVEVTVPDGVIKFKILEI 157 >gi|269797572|ref|YP_003311472.1| transcription elongation factor GreA [Veillonella parvula DSM 2008] gi|282850020|ref|ZP_06259402.1| transcription elongation factor GreA [Veillonella parvula ATCC 17745] gi|294793385|ref|ZP_06758530.1| transcription elongation factor GreA [Veillonella sp. 6_1_27] gi|294795204|ref|ZP_06760338.1| transcription elongation factor GreA [Veillonella sp. 3_1_44] gi|269094201|gb|ACZ24192.1| transcription elongation factor GreA [Veillonella parvula DSM 2008] gi|282580209|gb|EFB85610.1| transcription elongation factor GreA [Veillonella parvula ATCC 17745] gi|294453996|gb|EFG22371.1| transcription elongation factor GreA [Veillonella sp. 3_1_44] gi|294455816|gb|EFG24181.1| transcription elongation factor GreA [Veillonella sp. 6_1_27] Length = 157 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL Sbjct: 9 LTAEGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+ Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK GD + V+ P G T+++L + Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156 >gi|153815947|ref|ZP_01968615.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756] gi|317500711|ref|ZP_07958929.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|331089814|ref|ZP_08338707.1| transcription elongation factor greA [Lachnospiraceae bacterium 3_1_46FAA] gi|145846766|gb|EDK23684.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756] gi|316897905|gb|EFV19958.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|330403511|gb|EGG83069.1| transcription elongation factor greA [Lachnospiraceae bacterium 3_1_46FAA] Length = 161 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYAGLKALEDELETLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S SP+ Sbjct: 69 EGILKNAEVVVEDEVDFDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLVGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIGK++GD +SV GE Y++L++ Sbjct: 129 GQALIGKKVGDTVSVETQAGEIKYKVLEI 157 >gi|83814801|ref|YP_445548.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855] gi|83756195|gb|ABC44308.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855] Length = 164 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 83/130 (63%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + EER RI I+EARA GDLSENAEY AAKE Q E R+ ++E+ I RA ++D ST+ Sbjct: 30 KTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVD 89 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 + + V++ ++GD++ + +V ++EA++ +S+ SPI L+ +E GD +S++ Sbjct: 90 DSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSID 149 Query: 143 APGGEKTYEI 152 P G ++I Sbjct: 150 VPAGTVHFKI 159 >gi|78222321|ref|YP_384068.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] gi|78193576|gb|ABB31343.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 161 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL W +EERPR+ + +S+A A GD SENAEY K+ + R+ L Sbjct: 8 ITPEGAKKLRDELAWLWKEERPRVTQGVSDAAAEGDRSENAEYIYGKKRLREIDRRIRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ + ++ FGA + L E GD+ Y++VG E D G +SI SP+ Sbjct: 68 TQRLDHLTVVEDPPPATGKVFFGAWIRL-ETEEGDEVIYRVVGPDETDASKGFISIDSPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AL+G+ GD + V P GE + +L+V + Sbjct: 127 GKALLGRNEGDEVPVRRPAGEAVFTVLEVAY 157 >gi|260893494|ref|YP_003239591.1| transcription elongation factor GreA [Ammonifex degensii KC4] gi|260865635|gb|ACX52741.1| transcription elongation factor GreA [Ammonifex degensii KC4] Length = 159 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 79/129 (61%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R + + I +A A+GD+SENAEY+ AK Q EGR+ LE I+ A VID + + + Sbjct: 28 RREVAERIKQALAFGDISENAEYEDAKNEQAFVEGRIITLEKILRHARVIDQEEIGTEEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 G+TV L + G + Y IVG +EAD + +S SP+ RAL+GK+ GD + V+ P G Sbjct: 88 TIGSTVRLKDLADGAEYEYTIVGSEEADPAAHRISYESPVGRALLGKKKGDTVDVDVPAG 147 Query: 147 EKTYEILQV 155 + +++IL + Sbjct: 148 KLSFQILDI 156 >gi|166153878|gb|ABY82795.1| transcription elongation factor [Listonella anguillarum] Length = 126 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 92/127 (72%), Gaps = 2/127 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ +E R + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EQLLREELDRLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG + Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119 Query: 121 SISSPIA 127 S+SSPIA Sbjct: 120 SVSSPIA 126 >gi|152972284|ref|YP_001337430.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896873|ref|YP_002921618.1| transcription elongation factor GreB [Klebsiella pneumoniae NTUH-K2044] gi|262045242|ref|ZP_06018268.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012470|ref|ZP_08307384.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3] gi|150957133|gb|ABR79163.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549200|dbj|BAH65551.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037452|gb|EEW38697.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533821|gb|EGF60500.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3] Length = 157 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 96/156 (61%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDIKRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|294507431|ref|YP_003571489.1| transcription elongation factor greA [Salinibacter ruber M8] gi|294343759|emb|CBH24537.1| Transcription elongation factor greA [Salinibacter ruber M8] Length = 178 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 83/130 (63%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + EER RI I+EARA GDLSENAEY AAKE Q E R+ ++E+ I RA ++D ST+ Sbjct: 44 KTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVD 103 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 + + V++ ++GD++ + +V ++EA++ +S+ SPI L+ +E GD +S++ Sbjct: 104 DSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSID 163 Query: 143 APGGEKTYEI 152 P G ++I Sbjct: 164 VPAGTVHFKI 173 >gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM 9941] gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM 9941] Length = 154 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF K+Q+EL++ + R + + I +AR +GD+SEN+EY AK Q L E R++EL Sbjct: 1 MTPEGFAKLQEELKYLTEVRRKEVAERIRQAREFGDISENSEYDDAKNEQGLLERRISEL 60 Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + A+++D S+ + G V+L G ++ +QIVG EAD SG +S +SP Sbjct: 61 QRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHASP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +AL+ + +G+ + V+ P G YEI+ V Sbjct: 121 VGKALLRRRVGEKVRVSTPRGATEYEIVSV 150 >gi|169829310|ref|YP_001699468.1| transcription elongation factor GreA [Lysinibacillus sphaericus C3-41] gi|168993798|gb|ACA41338.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Lysinibacillus sphaericus C3-41] Length = 154 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ L Sbjct: 1 MTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRISTL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVSI 122 +++I A +I ++ G TV+ VE K S ++++Y IVG EAD +S Sbjct: 61 KSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTEEESYTIVGSAEADPMEFRISN 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPIA+ L+G+ G+ ++V PGGE +I+ + Sbjct: 121 ESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSI 153 >gi|320450471|ref|YP_004202567.1| transcription cleavage factor GreA [Thermus scotoductus SA-01] gi|320150640|gb|ADW22018.1| transcription cleavage factor GreA [Thermus scotoductus SA-01] Length = 156 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELHHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153 >gi|291556889|emb|CBL34006.1| transcription elongation factor GreA [Eubacterium siraeum V10Sc8a] Length = 156 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IG++LG+ + V AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGRKLGEEVLVEAPAGVKKYKIVEI 154 >gi|323341649|ref|ZP_08081882.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464074|gb|EFY09267.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 156 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 15/164 (9%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++IPVT G D++ +ELR + ERP +I+ + ARA GDLSENA+Y AA++ Q E Sbjct: 1 MTERIPVTQAGLDELNRELRQLIEVERPEVIEDLKAARAQGDLSENADYDAARDRQARVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDR------IAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+ E+E +T+ E+ID GD+ + GATV++ + ++ + IVG EAD Sbjct: 61 ARIREIEATLTKVEIID-----GDKAKKHKTVGLGATVTIYDMEMEIEETFSIVGSVEAD 115 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++G +S SP+A+A+ + GD++ V ++ YE+ +VL I Sbjct: 116 PENGKLSNVSPLAQAMNEAKEGDVVEVQV---DEPYEV-KVLKI 155 >gi|294675384|ref|YP_003576000.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] gi|294473225|gb|ADE82614.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] Length = 155 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 86/140 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +L Sbjct: 4 MSQEGYDKLIAELQRLEGVERPKASAAIAEAREKGDLSENSEYDAAKEAQAHLEDKINQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+VID S +S D + + V + + K Y IV + EA+++ G +SI +PI Sbjct: 64 KMTIAEAKVIDTSRLSTDSVQILSKVEMTNLTNKAKMTYTIVSESEANLREGKISIQTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ ++GD + V P G Sbjct: 124 AQGLLNHKVGDEVEVKIPRG 143 >gi|303242488|ref|ZP_07328968.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] gi|302589956|gb|EFL59724.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] Length = 158 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV K + +T +G K++QEL + + +R + + I +A A+GDLSEN+EY AK Q Sbjct: 1 MVKKEVVLTYEGLQKLEQELEFLKAVKRREVAERIKQALAFGDLSENSEYDEAKNEQAHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +LEN++ A+VID + D ++ G+ V++++ ++ Y IVG EA+ Sbjct: 61 EGRIVQLENMLKNAKVIDEDEVKTDVVSVGSKVTILDIEFNEEIEYYIVGSAEANPSQFK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ AL+GK+ G ++ VN P G ++I+ + Sbjct: 121 ISNESPVGSALMGKKKGTVVDVNVPDGIVKFKIVNI 156 >gi|257457224|ref|ZP_05622399.1| transcript cleavage factor/unknown domain fusion protein [Treponema vincentii ATCC 35580] gi|257445375|gb|EEV20443.1| transcript cleavage factor/unknown domain fusion protein [Treponema vincentii ATCC 35580] Length = 892 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 92/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTSK ++ ++EL+ + E PR K + A + GDL EN+EY+AAKE QN ++ L Sbjct: 739 VTSKMLEEKKKELQRLIEVEIPRNSKEVGFALSLGDLRENSEYKAAKEEQNRLNNTVSRL 798 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + RA+V D +T++ R+ FG V+L + S +K+ Y I+G E+D ++G++S SP+ Sbjct: 799 QEELERAQVFDPTTITTTRVGFGTVVTLEKPGSNEKETYTILGPWESDPENGVISYMSPL 858 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L+ ++G+ +S EKTY+IL + Sbjct: 859 GTNLLNHKVGETLSFTVNEEEKTYKILDI 887 >gi|295102173|emb|CBK99718.1| transcription elongation factor GreA [Faecalibacterium prausnitzii L2-6] Length = 161 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 85/146 (58%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I A VID S +S + ++ G V++ + + + Y IVG EAD +G + Sbjct: 61 NRITELEQMIKNAVVIDESELSVESVSVGTHVTIQMEGEDEVEEYDIVGRTEADPLNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S SP+ AL+ K +GD V P G Sbjct: 121 SDESPVGHALLEKAVGDTAEVLLPTG 146 >gi|320335243|ref|YP_004171954.1| transcription elongation factor GreA [Deinococcus maricopensis DSM 21211] gi|319756532|gb|ADV68289.1| transcription elongation factor GreA [Deinococcus maricopensis DSM 21211] Length = 156 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T KG+DK+++ L + Q R +I + + A A GD+ E+A Y A+ Q+ NE R Sbjct: 4 EKITMTRKGYDKLRETLEYLQTTRREQISEYMGSALADGDIRESAAYDEARMQQSENEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ ++RA++++ + +G I GA V V+ G++++ +IVG EAD G +S Sbjct: 64 ILELEDQLSRAQIVEEGSQTG--IGLGAKVR-VKDAKGNERDIEIVGTYEADALKGKISD 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ +AL G GD++ VN P G++ + ++ V + Sbjct: 121 HSPLGQALAGHGTGDMVVVNLPKGQQKFTVISVKY 155 >gi|121535049|ref|ZP_01666866.1| transcription elongation factor GreA [Thermosinus carboxydivorans Nor1] gi|121306299|gb|EAX47224.1| transcription elongation factor GreA [Thermosinus carboxydivorans Nor1] Length = 159 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G KI+Q+L + R + + I +A +GD+SEN+EY+ AK Q EG + L Sbjct: 8 LTVDGLKKIEQKLEHLKSVRRREVAERIKQAIEFGDISENSEYEDAKNEQAFIEGEILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+VID +S D + G+TV L + GD+ Y +VG EAD +S SP+ Sbjct: 68 EKMLRNAKVIDEGEISTDTVTIGSTVVLKDLEFGDELEYTLVGSAEADPMEFKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++G+++G ++ VN P G Y+IL++ Sbjct: 128 GQAIMGQKVGSVVEVNVPAGILKYKILEI 156 >gi|15829024|ref|NP_326384.1| transcription elongation factor GreA [Mycoplasma pulmonis UAB CTIP] gi|14089968|emb|CAC13726.1| TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR GREA) [Mycoplasma pulmonis] Length = 164 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQ-QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +KI +T + K ++E +W ERP +I I EAR GDLSENAEY AA+E Q E Sbjct: 12 NKIYLTQETIKKYEEE-KWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIED 70 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S Sbjct: 71 RITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKIS 128 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A+++IG GD++ ++AP + T +IL V Sbjct: 129 YESPLAKSIIGFSKGDVVEIDAP-DKYTTKILSV 161 >gi|25453004|sp|Q98Q16|GREA_MYCPU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 157 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQ-QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +KI +T + K ++E +W ERP +I I EAR GDLSENAEY AA+E Q E Sbjct: 5 NKIYLTQETIKKYEEE-KWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIED 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S Sbjct: 64 RITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A+++IG GD++ ++AP + T +IL V Sbjct: 122 YESPLAKSIIGFSKGDVVEIDAP-DKYTTKILSV 154 >gi|15901363|ref|NP_345967.1| transcription elongation factor GreA [Streptococcus pneumoniae TIGR4] gi|111658360|ref|ZP_01409047.1| hypothetical protein SpneT_02000439 [Streptococcus pneumoniae TIGR4] gi|148988561|ref|ZP_01819994.1| transcription elongation factor GreA [Streptococcus pneumoniae SP6-BS73] gi|25453002|sp|Q97PT2|GREA_STRPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|14973006|gb|AAK75607.1| transcription elongation factor GreA [Streptococcus pneumoniae TIGR4] gi|147925762|gb|EDK76837.1| transcription elongation factor GreA [Streptococcus pneumoniae SP6-BS73] Length = 160 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD G VS SPI +ALIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFVGKVSNESPIGQALIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|94984775|ref|YP_604139.1| transcription elongation factor GreA [Deinococcus geothermalis DSM 11300] gi|94555056|gb|ABF44970.1| transcription elongation factor GreA [Deinococcus geothermalis DSM 11300] Length = 156 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 3/154 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G+DK+++ L + + R +I + + A A GDL E+A Y A+ Q+ NE R+ Sbjct: 5 RIPMTKRGYDKLRETLEYLKTTRREQISEYMGSAIADGDLRESAAYDEARMQQSENEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ + RA++I+ G GA V V G+++ +++VG E DV G +S + Sbjct: 65 LELEDQLERAQIIEEDASGG--AGLGAKVK-VRDEKGNERQFELVGTYEVDVLKGKISDA 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI +AL GK G I++V P G +E+L+V + Sbjct: 122 SPIGQALSGKRPGQIVTVQLPKGSAKFEVLEVTY 155 >gi|83319925|ref|YP_424238.1| transcription elongation factor GreA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123740058|sp|Q2SSM5|GREA_MYCCT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|83283811|gb|ABC01743.1| transcription elongation factor GreA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 157 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S T S + G+TV + K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120 Query: 120 VSISSPIARALIGKELGDIISV 141 +S SPIA+A++GK++GD + + Sbjct: 121 ISNESPIAKAILGKKIGDTVEI 142 >gi|145641637|ref|ZP_01797214.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145273684|gb|EDK13553.1| transcription elongation factor GreA [Haemophilus influenzae 22.4-21] Length = 107 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 74/100 (74%), Gaps = 1/100 (1%) Query: 60 EGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SG Sbjct: 8 EGRIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSG 67 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 68 LISVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 107 >gi|313665187|ref|YP_004047058.1| transcription elongation factor GreA [Mycoplasma leachii PG50] gi|312949485|gb|ADR24081.1| putative transcription elongation factor GreA [Mycoplasma leachii PG50] Length = 157 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S T S + G+TV + K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120 Query: 120 VSISSPIARALIGKELGDIISV 141 +S SPIA+A++GK++GD + + Sbjct: 121 ISNESPIAKAILGKKIGDTVEI 142 >gi|303228842|ref|ZP_07315655.1| transcription elongation factor GreA [Veillonella atypica ACS-134-V-Col7a] gi|302516462|gb|EFL58391.1| transcription elongation factor GreA [Veillonella atypica ACS-134-V-Col7a] Length = 157 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q EG ++EL Sbjct: 9 LTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAFIEGYISEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+ Sbjct: 69 ENKINTAKIID-ESIKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK GD + V+ P G T+++L + Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156 >gi|71279513|ref|YP_271605.1| transcription elongation factor GreB [Colwellia psychrerythraea 34H] gi|71145253|gb|AAZ25726.1| transcription elongation factor GreB [Colwellia psychrerythraea 34H] Length = 160 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 99/159 (62%), Gaps = 21/159 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+D++ +EL++ ++ERP+I +++SEA A GD SENAEY K R+ E+ Sbjct: 7 ITRAGWDRLDKELKFLWKDERPKITRSVSEAAAQGDRSENAEYIYGKR-------RLREI 59 Query: 67 EN----IITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQ 116 + ++ R E D++ + D R+ FGA V+L+ N D + Y++VG E DV+ Sbjct: 60 DRRVRFLMKRTE--DLTIVYPDPQQEGRVFFGAWVTLI--NEDDIEVVYRLVGPDEWDVK 115 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G +SI SP+ARAL+GK + D I VNAP GE+ ++I+ + Sbjct: 116 RGEISIDSPMARALLGKAVDDEIVVNAPEGERVFDIVNI 154 >gi|254163334|ref|YP_003046442.1| transcription elongation factor GreB [Escherichia coli B str. REL606] gi|297517135|ref|ZP_06935521.1| transcription elongation factor GreB [Escherichia coli OP50] gi|242378929|emb|CAQ33727.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)] gi|253975235|gb|ACT40906.1| transcription elongation factor GreB [Escherichia coli B str. REL606] gi|253979391|gb|ACT45061.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)] Length = 158 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|146307584|ref|YP_001188049.1| transcription elongation factor GreB [Pseudomonas mendocina ymp] gi|145575785|gb|ABP85317.1| transcription elongation factor GreB [Pseudomonas mendocina ymp] Length = 165 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+ +E G++ Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEKLKVVSDRPSDPNKVYFGAWVT-IEDEDGEQSRYRIVGPDELDLKQGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK L + V++P GEKT I+++ Sbjct: 134 ARALVGKPLDAEVRVHSPSGEKTCYIVEI 162 >gi|225569857|ref|ZP_03778882.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM 15053] gi|225161327|gb|EEG73946.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM 15053] Length = 160 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 86/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 8 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G V + +K ++ ++IVG EA+ G +S SP+ Sbjct: 68 EGILKNAEVVVEDEVDFDKINVGCAVKVFDKTFDEEMEFKIVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD + V GE Y++L++ Sbjct: 128 GQALMGKKVGDTVKVETQAGEMAYKVLEI 156 >gi|127514564|ref|YP_001095761.1| transcription elongation factor GreB [Shewanella loihica PV-4] gi|126639859|gb|ABO25502.1| transcription elongation factor GreB [Shewanella loihica PV-4] Length = 160 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITREGWQALDRELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E +G Y+IVG E D + G ++I SP+ Sbjct: 66 VKRVEDLQIVDYSPQQEGKVFFGAWVEL-EDETGKIVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D + VN P G+K + + Sbjct: 125 ARALIGKQVDDEVVVNTPAGKKEWYV 150 >gi|291541638|emb|CBL14748.1| transcription elongation factor GreA [Ruminococcus bromii L2-63] Length = 160 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G +++EL + +R I + I AR+YGDLSEN+EY AK Q + E R+A + Sbjct: 8 LTAEGLKNLEEELAELKNVKRKEIAEKIKVARSYGDLSENSEYDDAKNEQAIMEARIATI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--GDQEADVQSGLVSISS 124 E+I+ A++ID S S D++ + V++ + + Y+IV G E + G +S S Sbjct: 68 ESILKTAQIIDESETSNDKVHLTSVVTIEMVGTDRQMTYKIVGSGSNETNPAQGKISDES 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +AL+ + +GD++ V PGG K ++IL++ Sbjct: 128 PVGKALMDRCVGDVVEVETPGGVKAFKILEI 158 >gi|260913554|ref|ZP_05920031.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC 43325] gi|260632330|gb|EEX50504.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC 43325] Length = 164 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + Sbjct: 6 MVKSNYITRTGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V+L E G++K Y+IVG E D + Sbjct: 66 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVAL-ENEEGEEKQYRIVGCDEFDPAKNWI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 SI SP+ARALIGK + D I VN P G Sbjct: 125 SIDSPVARALIGKAVDDEIKVNTPSG 150 >gi|300931063|ref|ZP_07146417.1| transcription elongation factor GreB [Escherichia coli MS 187-1] gi|300461083|gb|EFK24576.1| transcription elongation factor GreB [Escherichia coli MS 187-1] Length = 170 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|268609180|ref|ZP_06142907.1| transcription elongation factor GreA [Ruminococcus flavefaciens FD-1] Length = 156 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ + +DK+ EL +R + + + AR+YGDLSENAEY AK Q + E +AEL Sbjct: 6 MSRESYDKLVAELNDLIINKRKEVAERLKVARSYGDLSENAEYDEAKNEQAILEAHIAEL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I AE++D S +S D I + +++ ++G + + IV A+V+ G +S +SPI Sbjct: 66 QYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKISDASPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A + K +GD+ V+AP GE +E++++ Sbjct: 126 GKAAMKKRVGDVFIVDAPAGELKFEVVEI 154 >gi|212696520|ref|ZP_03304648.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM 7454] gi|325849676|ref|ZP_08170879.1| transcription elongation factor GreA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676456|gb|EEB36063.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM 7454] gi|325480017|gb|EGC83095.1| transcription elongation factor GreA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 157 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q E R+A++E++I A Sbjct: 16 KLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIRHA 75 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 + + ST + D ++ G+ V + ++ + Y+IVG E++ G +S SP+ ALIGK Sbjct: 76 KTFEDST-NKDEVSVGSKVLIHDEEFDEDFEYKIVGTAESNPLEGFISNESPVGEALIGK 134 Query: 134 ELGDIISVNAPGGEKTYEILQV 155 + GD + V P G+ Y I ++ Sbjct: 135 KKGDKVEVATPNGKCYYTIKEI 156 >gi|18034645|gb|AAL57611.1|AF456234_1 transcription cleavage factor GreA [Thermus aquaticus] Length = 156 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153 >gi|147676597|ref|YP_001210812.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] gi|146272694|dbj|BAF58443.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] Length = 158 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 88/150 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + + I +A +GD++EN+EY+ AK Q EGR+ L Sbjct: 8 LTVNGLKKLESELELLKSVKRREVAERIKQAIEFGDITENSEYEDAKNEQAFIEGRILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A++ID + + ++ G+TV L + GD+ Y IVG EAD + +S SP+ Sbjct: 68 EKMLRNAKIIDDENIGTEVVSIGSTVLLKDLECGDEYKYTIVGSAEADPGANKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 RA++G+ G ++ V P G+ Y+I+ +L Sbjct: 128 GRAILGQPKGSVVEVTVPAGQLKYQIIDIL 157 >gi|157372858|ref|YP_001480847.1| transcription elongation factor GreB [Serratia proteamaculans 568] gi|157324622|gb|ABV43719.1| transcription elongation factor GreB [Serratia proteamaculans 568] Length = 157 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKQELDYLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+D S ++ FGA V +VE G+ K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKVVDHSPQQEGKVFFGAWV-VVENEDGEIKRFRIVGYDEIFGRRDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD +VN P G+ + + ++ ++ Sbjct: 125 ARALLKKEVGDSATVNTPAGDALWYVNEIEYV 156 >gi|153952824|ref|YP_001393589.1| transcription elongation factor GreA [Clostridium kluyveri DSM 555] gi|219853489|ref|YP_002470611.1| hypothetical protein CKR_0146 [Clostridium kluyveri NBRC 12016] gi|229485766|sp|A5N4L0|GREA_CLOK5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799556|sp|B9DY72|GREA_CLOK1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146345705|gb|EDK32241.1| GreA1 [Clostridium kluyveri DSM 555] gi|219567213|dbj|BAH05197.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 159 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G K++ EL + + +R I + I A ++GDLSEN+EY +AK Q EGR+ Sbjct: 6 KYVMTYEGIKKLENELEYLKTVKRKEITEKIKVALSFGDLSENSEYDSAKNEQAFVEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ A ++D + D + G+ V + + + ++ Y IVG EAD + +S Sbjct: 66 VQLENMLKNASMVDEDEVPLDIVGIGSIVKVKDYDLDEEVEYLIVGSAEADPINNKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + L+GK+ GD+I + P G Y+IL + Sbjct: 126 SPVGKGLVGKKPGDVIEIQVPDGVSKYKILNI 157 >gi|33152279|ref|NP_873632.1| transcription elongation factor GreB [Haemophilus ducreyi 35000HP] gi|71152092|sp|Q7VM42|GREB_HAEDU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|33148502|gb|AAP96021.1| transcription elongation factor [Haemophilus ducreyi 35000HP] Length = 162 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ +EERP++ +++SEA A GD SENAEY K + R+ L Sbjct: 7 ITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYIYGKRRLREIDRRIRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ID ++ FGA + L E N G+ Y+IVG E D +SI SP+ Sbjct: 67 SKRLEALQIIDYHPQQAGKVFFGAWIEL-ENNEGEINQYRIVGCDEFDPTKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK + D I V P G+ + I ++ + Sbjct: 126 ARALIGKCVDDEIEVQTPTGKAVFYINKIWY 156 >gi|325268494|ref|ZP_08135124.1| transcription elongation factor GreA [Prevotella multiformis DSM 16608] gi|324989022|gb|EGC20975.1| transcription elongation factor GreA [Prevotella multiformis DSM 16608] Length = 169 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 90/140 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+ Sbjct: 17 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P+ Sbjct: 77 KMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTHAKMKYTIVSETEANLKQNKISIKTPV 136 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 137 AQGLLNKKVGDEVDIKIPRG 156 >gi|260588922|ref|ZP_05854835.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] gi|260540701|gb|EEX21270.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] Length = 181 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 87/152 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ Sbjct: 26 KTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARI 85 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S Sbjct: 86 EEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISNE 145 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIG GD +SV P G Y+IL + Sbjct: 146 SPVGKALIGARKGDTVSVEMPAGVMEYKILGI 177 >gi|317494411|ref|ZP_07952825.1| transcription elongation factor GreB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917661|gb|EFV39006.1| transcription elongation factor GreB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 158 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITRGGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + G K ++IVG E Q +SI SP+ Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDEGTIKRFRIVGYDEIFGQKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD ++V P GE + + ++ Sbjct: 125 ARALLKKEVGDAVTVMTPAGEAVWYVNEI 153 >gi|304403741|ref|ZP_07385403.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] gi|304346719|gb|EFM12551.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] Length = 159 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 87/153 (56%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G+DK+ EL + R + + + A +YGDL EN+EY +AK Q+ E R Sbjct: 5 EEVILTQEGYDKLMAELEELKTTTRKELAERLKVAISYGDLKENSEYHSAKNDQSFVETR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LEN+ A ++ + + G TV L + + Y IVG EAD+ + +S Sbjct: 65 IKTLENMFKHARIVQAEKLDTAVVQVGFTVKLHDVEFDEDVTYTIVGPAEADIMNNKLSY 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + LIGK +G+ I+V AP G +Y+IL++ Sbjct: 125 ESPLGKELIGKSVGNAITVTAPSGLISYKILEI 157 >gi|157148990|ref|YP_001456309.1| transcription elongation factor GreB [Citrobacter koseri ATCC BAA-895] gi|157086195|gb|ABV15873.1| hypothetical protein CKO_04828 [Citrobacter koseri ATCC BAA-895] Length = 157 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKHELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD + ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDEGDIRRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ V+ P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAVVHTPAGEASWYVNEIEYV 156 >gi|261341905|ref|ZP_05969763.1| transcription elongation factor GreB [Enterobacter cancerogenus ATCC 35316] gi|288315808|gb|EFC54746.1| transcription elongation factor GreB [Enterobacter cancerogenus ATCC 35316] Length = 157 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD ++IVG E + +SI Sbjct: 62 VRYLTKCLEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ V PGGE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAVVQTPGGEASWYVNEIEYV 156 >gi|322437290|ref|YP_004219502.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9] gi|321165017|gb|ADW70722.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9] Length = 173 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 88/145 (60%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+ +E++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ + Sbjct: 8 KLAEEIKALEYELTTELPAEIKKAVALGDLSENAEYHMAKQRQVFVNARLGQLKKRMGEL 67 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +++++ + D+ FG+ +++ + ++ YQ+V +E+DV GL+S +SPI RAL+ K Sbjct: 68 AMVNLANIPHDKTGFGSRITVFDSTKDEEIVYQLVTSEESDVSKGLISTTSPIGRALLNK 127 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 E+GD ++V P G++ E+L++ I Sbjct: 128 EVGDTVTVVTPNGKRELEVLKLATI 152 >gi|295094872|emb|CBK83963.1| Transcription elongation factor [Coprococcus sp. ART55/1] Length = 165 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +K++QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKKDIEKMEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A++ID T + D + TV++ ++ +++ Y++V ADV G VS SPI Sbjct: 65 DRLVRTADIID-DTSADDEVGIDNTVTVYFEDDDEEETYRVVTSVRADVLDGRVSNVSPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 RA++G ++GD + V GE Y +++ Sbjct: 124 GRAIMGHKVGDRVQVVPEKGEPYYLVIR 151 >gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC 39073] gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC 39073] Length = 160 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G K+++EL + + +R + + + +A +GD+SEN+EY+ AK Q EGR+ L Sbjct: 8 LTANGLKKLEEELEYLKTVKRQEVAERLKQAIEFGDISENSEYEDAKNEQAFIEGRILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+VI S + D ++ G+ V+L + + G++ Y+IVG EAD +S SP+ Sbjct: 68 EKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDEGEEIQYEIVGSMEADPAENRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G G+ +++ P G Y+IL + Sbjct: 128 GKALLGHHTGETVTIQVPAGNLRYQILNI 156 >gi|331083388|ref|ZP_08332500.1| transcription elongation factor greA [Lachnospiraceae bacterium 6_1_63FAA] gi|330404081|gb|EGG83629.1| transcription elongation factor greA [Lachnospiraceae bacterium 6_1_63FAA] Length = 160 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 86/150 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ Sbjct: 5 KTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S Sbjct: 65 EEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SP+ +ALIG GD +SV P G Y+IL Sbjct: 125 SPVGKALIGARKGDTVSVEMPAGVMEYKIL 154 >gi|304440038|ref|ZP_07399931.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371530|gb|EFM25143.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 164 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 88/155 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 8 MEKDIFFTPEGLEKIENEIEFLKTVRRKEVAERIKIALGYGDLSENSEYDEAKNEQAQVE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LEN++ A VI+ ++ + + G+TVS+ + NS + Y IVG E+ G + Sbjct: 68 ERIVKLENMVRNAVVIESDDLNTEIVNIGSTVSVKDINSDKESTYTIVGSAESSPLEGKI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ LIGK++GD++ + P G T EI+ + Sbjct: 128 SNESPVGSGLIGKKIGDVVDIEVPKGTITLEIMNI 162 >gi|300919309|ref|ZP_07135822.1| transcription elongation factor GreB [Escherichia coli MS 115-1] gi|300413604|gb|EFJ96914.1| transcription elongation factor GreB [Escherichia coli MS 115-1] Length = 153 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|191167876|ref|ZP_03029680.1| transcription elongation factor GreB [Escherichia coli B7A] gi|190902049|gb|EDV61794.1| transcription elongation factor GreB [Escherichia coli B7A] Length = 158 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGETSWYV 150 >gi|301050385|ref|ZP_07197272.1| transcription elongation factor GreB [Escherichia coli MS 185-1] gi|300297895|gb|EFJ54280.1| transcription elongation factor GreB [Escherichia coli MS 185-1] Length = 161 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|238765202|ref|ZP_04626133.1| Transcription elongation factor greB [Yersinia kristensenii ATCC 33638] gi|238696585|gb|EEP89371.1| Transcription elongation factor greB [Yersinia kristensenii ATCC 33638] Length = 165 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPIVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D ++ FGA V VE S +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKVVDPDPRQEGKVYFGAWVR-VENESEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|288928758|ref|ZP_06422604.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317 str. F0108] gi|288329742|gb|EFC68327.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317 str. F0108] Length = 154 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 87/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +L Sbjct: 4 MSQEGYEKLVAELRRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D S +S D + + V + + K Y IV + EA+++ G ++I++PI Sbjct: 64 KVAINEAKIVDTSRLSSDAVQILSKVQMTNLTTKAKMTYTIVSESEANLKEGKIAITTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K+ GD + + P G Sbjct: 124 AQGLLNKKEGDEVEITIPRG 143 >gi|218295530|ref|ZP_03496343.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23] gi|218244162|gb|EED10688.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23] Length = 156 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA +++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVIVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153 >gi|89110604|ref|AP_004384.1| transcription elongation factor [Escherichia coli str. K-12 substr. W3110] gi|90111587|ref|YP_026216.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|157162883|ref|YP_001460201.1| transcription elongation factor GreB [Escherichia coli HS] gi|170018358|ref|YP_001723312.1| transcription elongation factor GreB [Escherichia coli ATCC 8739] gi|170082923|ref|YP_001732243.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|188492838|ref|ZP_03000108.1| transcription elongation factor GreB [Escherichia coli 53638] gi|193068770|ref|ZP_03049730.1| transcription elongation factor GreB [Escherichia coli E110019] gi|194431145|ref|ZP_03063438.1| transcription elongation factor GreB [Shigella dysenteriae 1012] gi|194435634|ref|ZP_03067737.1| transcription elongation factor GreB [Escherichia coli 101-1] gi|209920862|ref|YP_002294946.1| transcription elongation factor GreB [Escherichia coli SE11] gi|218555955|ref|YP_002388868.1| transcription elongation factor GreB [Escherichia coli IAI1] gi|238902497|ref|YP_002928293.1| transcription elongation factor [Escherichia coli BW2952] gi|253771765|ref|YP_003034596.1| transcription elongation factor GreB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256020750|ref|ZP_05434615.1| transcription elongation factor GreB [Shigella sp. D9] gi|256025866|ref|ZP_05439731.1| transcription elongation factor GreB [Escherichia sp. 4_1_40B] gi|301023124|ref|ZP_07186930.1| transcription elongation factor GreB [Escherichia coli MS 196-1] gi|312972330|ref|ZP_07786504.1| transcription elongation factor GreB [Escherichia coli 1827-70] gi|544419|sp|P30128|GREB_ECOLI RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|1763682|gb|AAB39763.1| GreB [Escherichia coli] gi|85676635|dbj|BAE77885.1| transcription elongation factor [Escherichia coli str. K12 substr. W3110] gi|87082261|gb|AAC76431.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|157068563|gb|ABV07818.1| transcription elongation factor GreB [Escherichia coli HS] gi|169753286|gb|ACA75985.1| transcription elongation factor GreB [Escherichia coli ATCC 8739] gi|169890758|gb|ACB04465.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|188488037|gb|EDU63140.1| transcription elongation factor GreB [Escherichia coli 53638] gi|192957846|gb|EDV88289.1| transcription elongation factor GreB [Escherichia coli E110019] gi|194420600|gb|EDX36676.1| transcription elongation factor GreB [Shigella dysenteriae 1012] gi|194425177|gb|EDX41161.1| transcription elongation factor GreB [Escherichia coli 101-1] gi|209914121|dbj|BAG79195.1| transcription elongation factor GreB [Escherichia coli SE11] gi|218362723|emb|CAR00349.1| transcription elongation factor [Escherichia coli IAI1] gi|238863678|gb|ACR65676.1| transcription elongation factor [Escherichia coli BW2952] gi|253322809|gb|ACT27411.1| transcription elongation factor GreB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447575|gb|ACX37997.1| transcription elongation factor GreB [Escherichia coli DH1] gi|299880978|gb|EFI89189.1| transcription elongation factor GreB [Escherichia coli MS 196-1] gi|309703817|emb|CBJ03158.1| transcription elongation factor [Escherichia coli ETEC H10407] gi|310334707|gb|EFQ00912.1| transcription elongation factor GreB [Escherichia coli 1827-70] gi|315137982|dbj|BAJ45141.1| transcription elongation factor greB [Escherichia coli DH1] gi|315614674|gb|EFU95314.1| transcription elongation factor GreB [Escherichia coli 3431] gi|320181896|gb|EFW56802.1| Transcription elongation factor GreB [Shigella boydii ATCC 9905] gi|320199576|gb|EFW74166.1| Transcription elongation factor GreB [Escherichia coli EC4100B] gi|323934604|gb|EGB31004.1| transcription elongation protein GreB [Escherichia coli E1520] gi|323939374|gb|EGB35585.1| transcription elongation proteinGreB [Escherichia coli E482] gi|323959594|gb|EGB55246.1| transcription elongation proteinGreB [Escherichia coli H489] gi|323970004|gb|EGB65279.1| transcription elongation proteinGreB [Escherichia coli TA007] gi|324116399|gb|EGC10318.1| transcription elongation proteinGreB [Escherichia coli E1167] gi|332085554|gb|EGI90720.1| transcription elongation factor GreB [Shigella boydii 5216-82] gi|332085689|gb|EGI90853.1| transcription elongation factor GreB [Shigella dysenteriae 155-74] gi|332345358|gb|AEE58692.1| transcription elongation factor GreB [Escherichia coli UMNK88] Length = 158 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|300907452|ref|ZP_07125097.1| transcription elongation factor GreB [Escherichia coli MS 84-1] gi|300400790|gb|EFJ84328.1| transcription elongation factor GreB [Escherichia coli MS 84-1] Length = 162 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFDRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|169830348|ref|YP_001716330.1| transcription elongation factor GreA [Candidatus Desulforudis audaxviator MP104C] gi|169637192|gb|ACA58698.1| transcription elongation factor GreA [Candidatus Desulforudis audaxviator MP104C] Length = 163 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K+++EL + + +R + + I +A +GD+++++EY+ AK Q EGR+ L Sbjct: 10 LTVAGLRKLERELEYLKMVKRREVAERIKQAIEFGDITDSSEYEDAKNEQAFIEGRIITL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+VID + + + G+TV L + N G++ Y IVG E+D +S +S SP+ Sbjct: 70 EKALRNAKVIDAEDVGTEEVGIGSTVRLKDLNGGEELQYTIVGSMESDPRSNKISDESPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RA++G+ +G+I+ + P G Y+I+ + Sbjct: 130 GRAMLGQRVGNIVEIQVPAGTLKYQIIDI 158 >gi|251793288|ref|YP_003008016.1| transcription elongation factor GreB [Aggregatibacter aphrophilus NJ8700] gi|247534683|gb|ACS97929.1| transcription elongation factor GreB [Aggregatibacter aphrophilus NJ8700] Length = 159 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWNVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA V L E G+ K Y++VG E D +SI SP+ Sbjct: 67 TKRLEVLQIVDYSPKQEGKIFFGAWVEL-ENEDGEVKQYRLVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE D I+V+ P G+ Sbjct: 126 ARALIGKEEEDEITVDTPSGK 146 >gi|303232444|ref|ZP_07319136.1| putative transcription elongation factor GreA [Atopobium vaginae PB189-T1-4] gi|302481528|gb|EFL44596.1| putative transcription elongation factor GreA [Atopobium vaginae PB189-T1-4] Length = 157 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G K+ EL WR+ E+ I++ + EAR +GDLSEN+EY AAKE Q+ NE R+ E+ Sbjct: 8 LTSEGRQKLVDELTWREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSQNESRINEI 67 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I+ A+V++ M+G+ ++ G V L++ + G + IVG E D + +S SP Sbjct: 68 RQILATAKVVE--HMAGELTVSIGTKVKLID-DKGKTNTFTIVGTTETDSLAHKISNESP 124 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155 LIG +GD I P G+ K Y I ++ Sbjct: 125 AGAELIGHVVGDSIEFATPAGKTKHYTITEI 155 >gi|187730872|ref|YP_001882083.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94] gi|187427864|gb|ACD07138.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94] Length = 158 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|82545761|ref|YP_409708.1| transcription elongation factor GreB [Shigella boydii Sb227] gi|82778777|ref|YP_405126.1| transcription elongation factor GreB [Shigella dysenteriae Sd197] gi|110643639|ref|YP_671369.1| transcription elongation factor GreB [Escherichia coli 536] gi|117625673|ref|YP_858996.1| transcription elongation factor GreB [Escherichia coli APEC O1] gi|157155011|ref|YP_001464863.1| transcription elongation factor GreB [Escherichia coli E24377A] gi|161367507|ref|NP_289946.2| transcription elongation factor GreB [Escherichia coli O157:H7 EDL933] gi|161486092|ref|NP_756047.2| transcription elongation factor GreB [Escherichia coli CFT073] gi|162139752|ref|NP_312275.2| transcription elongation factor GreB [Escherichia coli O157:H7 str. Sakai] gi|168747116|ref|ZP_02772138.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4113] gi|168753159|ref|ZP_02778166.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4401] gi|168759431|ref|ZP_02784438.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4501] gi|168765754|ref|ZP_02790761.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4486] gi|168772702|ref|ZP_02797709.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4196] gi|168779490|ref|ZP_02804497.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4076] gi|168785211|ref|ZP_02810218.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC869] gi|168797177|ref|ZP_02822184.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC508] gi|170680405|ref|YP_001745654.1| transcription elongation factor GreB [Escherichia coli SMS-3-5] gi|191171514|ref|ZP_03033062.1| transcription elongation factor GreB [Escherichia coli F11] gi|193061828|ref|ZP_03042925.1| transcription elongation factor GreB [Escherichia coli E22] gi|194426931|ref|ZP_03059483.1| transcription elongation factor GreB [Escherichia coli B171] gi|195934895|ref|ZP_03080277.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4024] gi|208806096|ref|ZP_03248433.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4206] gi|208813018|ref|ZP_03254347.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4045] gi|208821026|ref|ZP_03261346.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4042] gi|209400461|ref|YP_002272841.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4115] gi|215488687|ref|YP_002331118.1| transcription elongation factor GreB [Escherichia coli O127:H6 str. E2348/69] gi|217325218|ref|ZP_03441302.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14588] gi|218550664|ref|YP_002384455.1| transcription elongation factor GreB [Escherichia fergusonii ATCC 35469] gi|218560464|ref|YP_002393377.1| transcription elongation factor GreB [Escherichia coli S88] gi|218691683|ref|YP_002399895.1| transcription elongation factor GreB [Escherichia coli ED1a] gi|218697089|ref|YP_002404756.1| transcription elongation factor GreB [Escherichia coli 55989] gi|218702151|ref|YP_002409780.1| transcription elongation factor GreB [Escherichia coli IAI39] gi|218706997|ref|YP_002414516.1| transcription elongation factor GreB [Escherichia coli UMN026] gi|254795321|ref|YP_003080158.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14359] gi|260846190|ref|YP_003223968.1| transcription elongation factor GreB [Escherichia coli O103:H2 str. 12009] gi|260857513|ref|YP_003231404.1| transcription elongation factor GreB [Escherichia coli O26:H11 str. 11368] gi|260870132|ref|YP_003236534.1| transcription elongation factor GreB [Escherichia coli O111:H- str. 11128] gi|261224687|ref|ZP_05938968.1| transcription elongation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261254418|ref|ZP_05946951.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. FRIK966] gi|291284742|ref|YP_003501560.1| Transcription elongation factor greB [Escherichia coli O55:H7 str. CB9615] gi|293406984|ref|ZP_06650908.1| greB [Escherichia coli FVEC1412] gi|293412823|ref|ZP_06655491.1| transcription elongation factor GreB [Escherichia coli B354] gi|293416808|ref|ZP_06659445.1| transcription elongation factor GreB [Escherichia coli B185] gi|293453712|ref|ZP_06664131.1| transcription elongation factor GreB [Escherichia coli B088] gi|298382726|ref|ZP_06992321.1| transcription elongation factor GreB [Escherichia coli FVEC1302] gi|306816256|ref|ZP_07450394.1| transcription elongation factor GreB [Escherichia coli NC101] gi|307311930|ref|ZP_07591568.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309785849|ref|ZP_07680480.1| transcription elongation factor GreB [Shigella dysenteriae 1617] gi|331659695|ref|ZP_08360633.1| transcription elongation factor GreB [Escherichia coli TA206] gi|331665011|ref|ZP_08365912.1| transcription elongation factor GreB [Escherichia coli TA143] gi|331670228|ref|ZP_08371067.1| transcription elongation factor GreB [Escherichia coli TA271] gi|331685046|ref|ZP_08385632.1| transcription elongation factor GreB [Escherichia coli H299] gi|54037215|sp|P64274|GREB_ECO57 RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|54041323|sp|P64273|GREB_ECOL6 RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|166007061|pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007062|pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007063|pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007064|pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007065|pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007066|pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|81242925|gb|ABB63635.1| transcription elongation factor [Shigella dysenteriae Sd197] gi|81247172|gb|ABB67880.1| Transcription elongation factor [Shigella boydii Sb227] gi|110345231|gb|ABG71468.1| transcription elongation factor GreB [Escherichia coli 536] gi|115514797|gb|ABJ02872.1| transcription elongation factor GreB [Escherichia coli APEC O1] gi|157077041|gb|ABV16749.1| transcription elongation factor GreB [Escherichia coli E24377A] gi|170518123|gb|ACB16301.1| transcription elongation factor GreB [Escherichia coli SMS-3-5] gi|187771428|gb|EDU35272.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4196] gi|188018359|gb|EDU56481.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4113] gi|189002402|gb|EDU71388.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4076] gi|189358929|gb|EDU77348.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4401] gi|189364381|gb|EDU82800.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4486] gi|189369538|gb|EDU87954.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4501] gi|189374281|gb|EDU92697.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC869] gi|189380006|gb|EDU98422.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC508] gi|190908141|gb|EDV67732.1| transcription elongation factor GreB [Escherichia coli F11] gi|192932618|gb|EDV85215.1| transcription elongation factor GreB [Escherichia coli E22] gi|194414892|gb|EDX31162.1| transcription elongation factor GreB [Escherichia coli B171] gi|208725897|gb|EDZ75498.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4206] gi|208734295|gb|EDZ82982.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4045] gi|208741149|gb|EDZ88831.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4042] gi|209161861|gb|ACI39294.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4115] gi|215266759|emb|CAS11199.1| transcription elongation factor [Escherichia coli O127:H6 str. E2348/69] gi|217321439|gb|EEC29863.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14588] gi|218353821|emb|CAV00173.1| transcription elongation factor [Escherichia coli 55989] gi|218358205|emb|CAQ90852.1| transcription elongation factor [Escherichia fergusonii ATCC 35469] gi|218367233|emb|CAR05007.1| transcription elongation factor [Escherichia coli S88] gi|218372137|emb|CAR19999.1| transcription elongation factor [Escherichia coli IAI39] gi|218429247|emb|CAR10203.2| transcription elongation factor [Escherichia coli ED1a] gi|218434094|emb|CAR15011.1| transcription elongation factor [Escherichia coli UMN026] gi|222035108|emb|CAP77853.1| Transcription elongation factor greB [Escherichia coli LF82] gi|254594721|gb|ACT74082.1| transcription elongation factor [Escherichia coli O157:H7 str. TW14359] gi|257756162|dbj|BAI27664.1| transcription elongation factor GreB [Escherichia coli O26:H11 str. 11368] gi|257761337|dbj|BAI32834.1| transcription elongation factor GreB [Escherichia coli O103:H2 str. 12009] gi|257766488|dbj|BAI37983.1| transcription elongation factor GreB [Escherichia coli O111:H- str. 11128] gi|281180438|dbj|BAI56768.1| transcription elongation factor GreB [Escherichia coli SE15] gi|284923398|emb|CBG36492.1| transcription elongation factor [Escherichia coli 042] gi|290764615|gb|ADD58576.1| Transcription elongation factor greB [Escherichia coli O55:H7 str. CB9615] gi|291321838|gb|EFE61269.1| transcription elongation factor GreB [Escherichia coli B088] gi|291425795|gb|EFE98829.1| greB [Escherichia coli FVEC1412] gi|291431384|gb|EFF04369.1| transcription elongation factor GreB [Escherichia coli B185] gi|291468470|gb|EFF10963.1| transcription elongation factor GreB [Escherichia coli B354] gi|294493288|gb|ADE92044.1| transcription elongation factor GreB [Escherichia coli IHE3034] gi|298276562|gb|EFI18080.1| transcription elongation factor GreB [Escherichia coli FVEC1302] gi|305850652|gb|EFM51109.1| transcription elongation factor GreB [Escherichia coli NC101] gi|306908074|gb|EFN38574.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307555492|gb|ADN48267.1| transcription elongation factor and transcript cleavage [Escherichia coli ABU 83972] gi|307628467|gb|ADN72771.1| transcription elongation factor GreB [Escherichia coli UM146] gi|308926969|gb|EFP72445.1| transcription elongation factor GreB [Shigella dysenteriae 1617] gi|312947954|gb|ADR28781.1| transcription elongation factor GreB [Escherichia coli O83:H1 str. NRG 857C] gi|315062685|gb|ADT77012.1| transcription elongation factor [Escherichia coli W] gi|320175773|gb|EFW50859.1| Transcription elongation factor GreB [Shigella dysenteriae CDC 74-1112] gi|320186724|gb|EFW61447.1| Transcription elongation factor GreB [Shigella flexneri CDC 796-83] gi|320191583|gb|EFW66233.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. EC1212] gi|320197364|gb|EFW71979.1| Transcription elongation factor GreB [Escherichia coli WV_060327] gi|320639688|gb|EFX09282.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. G5101] gi|320645186|gb|EFX14202.1| transcription elongation factor GreB [Escherichia coli O157:H- str. 493-89] gi|320650497|gb|EFX18963.1| transcription elongation factor GreB [Escherichia coli O157:H- str. H 2687] gi|320655689|gb|EFX23612.1| transcription elongation factor GreB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661473|gb|EFX28888.1| transcription elongation factor GreB [Escherichia coli O55:H7 str. USDA 5905] gi|320666496|gb|EFX33479.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. LSU-61] gi|323154239|gb|EFZ40442.1| transcription elongation factor GreB [Escherichia coli EPECa14] gi|323162791|gb|EFZ48628.1| transcription elongation factor GreB [Escherichia coli E128010] gi|323174039|gb|EFZ59667.1| transcription elongation factor GreB [Escherichia coli LT-68] gi|323179069|gb|EFZ64643.1| transcription elongation factor GreB [Escherichia coli 1180] gi|323182866|gb|EFZ68267.1| transcription elongation factor GreB [Escherichia coli 1357] gi|323189005|gb|EFZ74289.1| transcription elongation factor GreB [Escherichia coli RN587/1] gi|323376727|gb|ADX48995.1| transcription elongation factor GreB [Escherichia coli KO11] gi|323944372|gb|EGB40447.1| transcription elongation protein GreB [Escherichia coli H120] gi|323950063|gb|EGB45946.1| transcription elongation proteinGreB [Escherichia coli H252] gi|323954657|gb|EGB50439.1| transcription elongation proteinGreB [Escherichia coli H263] gi|323966219|gb|EGB61655.1| transcription elongation proteinGreB [Escherichia coli M863] gi|323974790|gb|EGB69902.1| transcription elongation proteinGreB [Escherichia coli TW10509] gi|324111718|gb|EGC05698.1| transcription elongation proteinGreB [Escherichia fergusonii B253] gi|326337631|gb|EGD61466.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. 1044] gi|326344618|gb|EGD68367.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. 1125] gi|327251041|gb|EGE62734.1| transcription elongation factor GreB [Escherichia coli STEC_7v] gi|330909439|gb|EGH37953.1| transcription elongation factor GreB [Escherichia coli AA86] gi|331052910|gb|EGI24943.1| transcription elongation factor GreB [Escherichia coli TA206] gi|331057521|gb|EGI29507.1| transcription elongation factor GreB [Escherichia coli TA143] gi|331062290|gb|EGI34210.1| transcription elongation factor GreB [Escherichia coli TA271] gi|331077417|gb|EGI48629.1| transcription elongation factor GreB [Escherichia coli H299] gi|332090241|gb|EGI95339.1| transcription elongation factor GreB [Shigella boydii 3594-74] Length = 158 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|309794676|ref|ZP_07689098.1| transcription elongation factor GreB [Escherichia coli MS 145-7] gi|308121726|gb|EFO58988.1| transcription elongation factor GreB [Escherichia coli MS 145-7] Length = 170 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGETSWYV 162 >gi|301302284|ref|ZP_07208416.1| transcription elongation factor GreB [Escherichia coli MS 124-1] gi|300842447|gb|EFK70207.1| transcription elongation factor GreB [Escherichia coli MS 124-1] gi|315255996|gb|EFU35964.1| transcription elongation factor GreB [Escherichia coli MS 85-1] Length = 170 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFDRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|146295865|ref|YP_001179636.1| transcription elongation factor GreA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409441|gb|ABP66445.1| transcription elongation factor GreA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 162 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KFQLSREAYEKYLKELENLKTVKRKEVAEKIKIARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++G+ Y IVG +EA+ +S Sbjct: 69 AYLEKLINNAKIIDKDEVSTDFVGIGTNVKIQNVDTGEIVEYSIVGSKEANPFEFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIGK++G+++ V P G+ Y+IL++ Sbjct: 129 SPVGKALIGKKVGEVVEVTVPAGKFRYKILEI 160 >gi|169834166|ref|YP_001694924.1| transcription elongation factor GreA [Streptococcus pneumoniae Hungary19A-6] gi|238688370|sp|B1ICT9|GREA_STRPI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|168996668|gb|ACA37280.1| transcription elongation factor GreA [Streptococcus pneumoniae Hungary19A-6] Length = 160 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 82/129 (63%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI + LIGK+ GD ++ P G Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQDLIGKKTGDTATIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|150392207|ref|YP_001322256.1| transcription elongation factor GreA [Alkaliphilus metalliredigens QYMF] gi|149952069|gb|ABR50597.1| transcription elongation factor GreA [Alkaliphilus metalliredigens QYMF] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 91/152 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T++G KI+ +L + R + I +A A+GDLSEN+EY AK Q E R+ Sbjct: 5 EVLLTAQGLKKIEDDLEQLKTVRRREVAGRIKQAIAFGDLSENSEYDEAKNEQAQVEERI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A+LEN++ +A VID S +S D ++ G TV + + + Y IVG EAD +S Sbjct: 65 AKLENMLRKARVIDESEISSDVVSIGTTVEVKDLEYDEIVEYTIVGSAEADPYELRISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ R L+G+++G+++ + P G Y++L++ Sbjct: 125 SPVGRTLLGRKVGEVVDIQIPDGVTQYKVLKI 156 >gi|313894662|ref|ZP_07828225.1| transcription elongation factor GreA [Veillonella sp. oral taxon 158 str. F0412] gi|313440852|gb|EFR59281.1| transcription elongation factor GreA [Veillonella sp. oral taxon 158 str. F0412] Length = 157 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL Sbjct: 9 LTADGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I A++ID ++ GD ++ G+ V +++ D+ Y IVG EAD + +S SP+ Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVIVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++GK GD + V+ P G T+++L + Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156 >gi|332798250|ref|YP_004459749.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1] gi|332695985|gb|AEE90442.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 90/152 (59%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G K+++EL + + +R I I +A +GD+SEN+EY AK Q EGR+A Sbjct: 6 VVLTQEGLKKMEEELEYLKSVKRREIAARIKQAIDFGDISENSEYDEAKNEQAFVEGRIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + A++ID +S D ++ G+ V L + ++GD Y IVG EA+ +S S Sbjct: 66 LLEEKLRNAKLIDEVDISTDVVSVGSKVKLKDLDTGDIFEYMIVGSAEANPIENKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ ALIG++ G I+ V+ P G YEI+ ++ Sbjct: 126 PVGNALIGEKKGSIVEVSVPAGIIKYEIMDIM 157 >gi|294638113|ref|ZP_06716370.1| transcription elongation factor GreB [Edwardsiella tarda ATCC 23685] gi|291088745|gb|EFE21306.1| transcription elongation factor GreB [Edwardsiella tarda ATCC 23685] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L ++ +++D S ++ FGA V VE + G K ++IVG E ++ +SI Sbjct: 62 VRYLRKCMSMLKIVDYSPQQDGKVFFGAWVE-VENDDGVIKRFRIVGYDEIFGRNDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD +V P GE + I Sbjct: 121 DSPMARALLKKEVGDAATVITPSGEALWYI 150 >gi|331703265|ref|YP_004399952.1| transcription elongation factor [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384044|gb|ACU78614.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384876|gb|ACU79445.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455679|gb|ADH21914.1| transcription elongation factor GreA [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801820|emb|CBW53973.1| Transcription elongation factor [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 157 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL++ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S T S + G+TV V K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120 Query: 120 VSISSPIARALIGKELGDIISV 141 +S SPIA+A+IGK++ + + Sbjct: 121 ISNESPIAKAIIGKKVNTTVEI 142 >gi|254038573|ref|ZP_04872629.1| transcription elongation factor greB [Escherichia sp. 1_1_43] gi|300815398|ref|ZP_07095623.1| transcription elongation factor GreB [Escherichia coli MS 107-1] gi|300946852|ref|ZP_07161092.1| transcription elongation factor GreB [Escherichia coli MS 116-1] gi|300956734|ref|ZP_07169005.1| transcription elongation factor GreB [Escherichia coli MS 175-1] gi|301645845|ref|ZP_07245760.1| transcription elongation factor GreB [Escherichia coli MS 146-1] gi|332281953|ref|ZP_08394366.1| transcription elongation factor and transcript cleavage [Shigella sp. D9] gi|606340|gb|AAA58203.1| ORF_o170 [Escherichia coli str. K-12 substr. MG1655] gi|226839079|gb|EEH71102.1| transcription elongation factor greB [Escherichia sp. 1_1_43] gi|300316490|gb|EFJ66274.1| transcription elongation factor GreB [Escherichia coli MS 175-1] gi|300453461|gb|EFK17081.1| transcription elongation factor GreB [Escherichia coli MS 116-1] gi|300532290|gb|EFK53352.1| transcription elongation factor GreB [Escherichia coli MS 107-1] gi|301075923|gb|EFK90729.1| transcription elongation factor GreB [Escherichia coli MS 146-1] gi|324018723|gb|EGB87942.1| transcription elongation factor GreB [Escherichia coli MS 117-3] gi|332104305|gb|EGJ07651.1| transcription elongation factor and transcript cleavage [Shigella sp. D9] Length = 170 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|91212881|ref|YP_542867.1| transcription elongation factor GreB [Escherichia coli UTI89] gi|227883540|ref|ZP_04001345.1| transcription elongation factor GreB [Escherichia coli 83972] gi|237703136|ref|ZP_04533617.1| transcription elongation factor and transcript cleavage [Escherichia sp. 3_2_53FAA] gi|300822797|ref|ZP_07102933.1| transcription elongation factor GreB [Escherichia coli MS 119-7] gi|300898907|ref|ZP_07117206.1| transcription elongation factor GreB [Escherichia coli MS 198-1] gi|300926905|ref|ZP_07142670.1| transcription elongation factor GreB [Escherichia coli MS 182-1] gi|300937297|ref|ZP_07152138.1| transcription elongation factor GreB [Escherichia coli MS 21-1] gi|300985400|ref|ZP_07177423.1| transcription elongation factor GreB [Escherichia coli MS 45-1] gi|301019577|ref|ZP_07183737.1| transcription elongation factor GreB [Escherichia coli MS 69-1] gi|301329711|ref|ZP_07222460.1| transcription elongation factor GreB [Escherichia coli MS 78-1] gi|331649204|ref|ZP_08350290.1| transcription elongation factor GreB [Escherichia coli M605] gi|331654983|ref|ZP_08355982.1| transcription elongation factor GreB [Escherichia coli M718] gi|331674894|ref|ZP_08375651.1| transcription elongation factor GreB [Escherichia coli TA280] gi|331679470|ref|ZP_08380140.1| transcription elongation factor GreB [Escherichia coli H591] gi|12518036|gb|AAG58507.1|AE005563_1 transcription elongation factor and transcript cleavage [Escherichia coli O157:H7 str. EDL933] gi|26110436|gb|AAN82621.1|AE016768_39 Transcription elongation factor greB [Escherichia coli CFT073] gi|13363722|dbj|BAB37671.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. Sakai] gi|91074455|gb|ABE09336.1| transcription elongation factor and transcript cleavage [Escherichia coli UTI89] gi|209756508|gb|ACI76566.1| transcription elongation factor GreB [Escherichia coli] gi|209756510|gb|ACI76567.1| transcription elongation factor GreB [Escherichia coli] gi|209756512|gb|ACI76568.1| transcription elongation factor GreB [Escherichia coli] gi|209756514|gb|ACI76569.1| transcription elongation factor GreB [Escherichia coli] gi|209756516|gb|ACI76570.1| transcription elongation factor GreB [Escherichia coli] gi|226902400|gb|EEH88659.1| transcription elongation factor and transcript cleavage [Escherichia sp. 3_2_53FAA] gi|227839419|gb|EEJ49885.1| transcription elongation factor GreB [Escherichia coli 83972] gi|300357446|gb|EFJ73316.1| transcription elongation factor GreB [Escherichia coli MS 198-1] gi|300399165|gb|EFJ82703.1| transcription elongation factor GreB [Escherichia coli MS 69-1] gi|300408083|gb|EFJ91621.1| transcription elongation factor GreB [Escherichia coli MS 45-1] gi|300417088|gb|EFK00399.1| transcription elongation factor GreB [Escherichia coli MS 182-1] gi|300457620|gb|EFK21113.1| transcription elongation factor GreB [Escherichia coli MS 21-1] gi|300524563|gb|EFK45632.1| transcription elongation factor GreB [Escherichia coli MS 119-7] gi|300844223|gb|EFK71983.1| transcription elongation factor GreB [Escherichia coli MS 78-1] gi|315291670|gb|EFU51026.1| transcription elongation factor GreB [Escherichia coli MS 153-1] gi|315295897|gb|EFU55210.1| transcription elongation factor GreB [Escherichia coli MS 16-3] gi|325498948|gb|EGC96807.1| transcription elongation factor GreB [Escherichia fergusonii ECD227] gi|331041702|gb|EGI13846.1| transcription elongation factor GreB [Escherichia coli M605] gi|331046998|gb|EGI19076.1| transcription elongation factor GreB [Escherichia coli M718] gi|331067803|gb|EGI39201.1| transcription elongation factor GreB [Escherichia coli TA280] gi|331072642|gb|EGI43967.1| transcription elongation factor GreB [Escherichia coli H591] Length = 170 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|238751148|ref|ZP_04612643.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380] gi|238710626|gb|EEQ02849.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380] Length = 169 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 11 ITREGWQALDTELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE SG+++ +++VG E D +SI SP+ Sbjct: 71 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE Y IL++ Sbjct: 130 ARALIGKQVDDEVTVQTPNGEAIYCILEI 158 >gi|15603315|ref|NP_246389.1| transcription elongation factor GreB [Pasteurella multocida subsp. multocida str. Pm70] gi|13431537|sp|P57802|GREB_PASMU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|12721829|gb|AAK03534.1| GreB [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V+L E +G++K+Y+IVG E D +SI SP+ Sbjct: 67 TKRLEVLQIVDYHPKQEGKVFFGAWVAL-ENEAGEEKHYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK + D I V P G Sbjct: 126 ARALIGKSIDDEIKVETPSG 145 >gi|322381160|ref|ZP_08055163.1| transcription elongation factor GreA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154736|gb|EFX47007.1| transcription elongation factor GreA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 170 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 87/151 (57%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q EGR+ Sbjct: 18 VILTQEGLSKLENELDHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFIEGRII 77 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ A +I+ + D ++ G+TV++ + GD Y IVG E+D +S S Sbjct: 78 TLEKMLRNARIINSDDVDTDTVSVGSTVTMKDLEFGDTVEYTIVGTAESDPFLNKISNES 137 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +A++GK+ G I+ VN P G YEI+ + Sbjct: 138 PVGKAILGKQKGAIVDVNVPAGVIKYEIIDI 168 >gi|261867402|ref|YP_003255324.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412734|gb|ACX82105.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 160 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E G+ K Y+IVG E D + +SI SP+ Sbjct: 67 TKRLEVLQIVDYSPKQESKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPANNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK+ D I+V+ P G K + + +W Sbjct: 126 ARALIGKQEDDEITVDTPAG-KIWLCVNRIW 155 >gi|110807238|ref|YP_690758.1| transcription elongation factor GreB [Shigella flexneri 5 str. 8401] gi|161485871|ref|NP_709179.2| transcription elongation factor GreB [Shigella flexneri 2a str. 301] gi|161486379|ref|NP_839482.2| transcription elongation factor GreB [Shigella flexneri 2a str. 2457T] gi|110616786|gb|ABF05453.1| Transcription elongation factor [Shigella flexneri 5 str. 8401] gi|281602756|gb|ADA75740.1| Transcription elongation factor and transcript cleavage factor [Shigella flexneri 2002017] gi|313647298|gb|EFS11750.1| transcription elongation factor GreB [Shigella flexneri 2a str. 2457T] gi|332749495|gb|EGJ79912.1| transcription elongation factor GreB [Shigella flexneri K-671] gi|332750345|gb|EGJ80756.1| transcription elongation factor GreB [Shigella flexneri 4343-70] gi|332751378|gb|EGJ81781.1| transcription elongation factor GreB [Shigella flexneri 2747-71] gi|332763611|gb|EGJ93850.1| transcription elongation factor GreB [Shigella flexneri 2930-71] gi|332996406|gb|EGK16033.1| transcription elongation factor GreB [Shigella flexneri VA-6] gi|332996647|gb|EGK16272.1| transcription elongation factor GreB [Shigella flexneri K-272] gi|332997483|gb|EGK17099.1| transcription elongation factor GreB [Shigella flexneri K-218] gi|333012511|gb|EGK31892.1| transcription elongation factor GreB [Shigella flexneri K-304] gi|333013054|gb|EGK32430.1| transcription elongation factor GreB [Shigella flexneri K-227] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEANWYV 150 >gi|134298052|ref|YP_001111548.1| transcription elongation factor GreA [Desulfotomaculum reducens MI-1] gi|134050752|gb|ABO48723.1| transcription elongation factor GreA [Desulfotomaculum reducens MI-1] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 89/152 (58%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G +++ EL + +R ++ + I +A +GD+SEN+EY+ AK Q EGR+ Sbjct: 6 VMLTVTGLKQLEDELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFIEGRIL 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD + +S S Sbjct: 66 TLEKMLRNAKIIDDENLDNEVVSLGSKVILKDLEFGDELEYSIVGSVEADPDANKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RA++G+ G ++ VN P G YEI+ +L Sbjct: 126 PVGRAILGQSKGSVVEVNVPAGILKYEIVDIL 157 >gi|329121808|ref|ZP_08250424.1| transcription elongation factor GreA [Dialister micraerophilus DSM 19965] gi|327468081|gb|EGF13569.1| transcription elongation factor GreA [Dialister micraerophilus DSM 19965] Length = 162 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EGR+ EL Sbjct: 9 VTREGLEKMQKELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEGRILEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I R V+ G R+ +TV++ + + G ++ IVG E+D G +S SP Sbjct: 69 ETKI-RTAVLISQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKISNESPA 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 RAL+G +LGDI+ V+AP G Y+I Sbjct: 128 GRALMGSKLGDIVEVDAPTGIIKYKI 153 >gi|170766595|ref|ZP_02901048.1| transcription elongation factor GreB [Escherichia albertii TW07627] gi|170124033|gb|EDS92964.1| transcription elongation factor GreB [Escherichia albertii TW07627] Length = 158 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYV 150 >gi|212637544|ref|YP_002314069.1| transcription elongation factor and transcript cleavage [Shewanella piezotolerans WP3] gi|212559028|gb|ACJ31482.1| Transcription elongation factor and transcript cleavage [Shewanella piezotolerans WP3] Length = 160 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +GFDK+Q+EL + +E RP I K +S A + GD SENA+Y K+ + R+ L Sbjct: 6 VTREGFDKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V+D S ++ FGA V +E + G+K++++IVG E ++ +SI SP+ Sbjct: 66 RKTIENVQVVDYSPAQEGKVFFGAWVE-IENDDGEKRSFKIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+ KE+ D ++ P GE+ + I ++ Sbjct: 125 ARGLLKKEVDDEAVIHTPAGEQVWYINRI 153 >gi|291526253|emb|CBK91840.1| transcription elongation factor GreA [Eubacterium rectale DSM 17629] gi|291526764|emb|CBK92350.1| transcription elongation factor GreA [Eubacterium rectale M104/1] Length = 162 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD ++V GE TY++L++ Sbjct: 128 GKALLGKKVGDTVTVETQVGELTYKVLEI 156 >gi|317055778|ref|YP_004104245.1| transcription elongation factor GreA [Ruminococcus albus 7] gi|315448047|gb|ADU21611.1| transcription elongation factor GreA [Ruminococcus albus 7] Length = 158 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ G++K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL Sbjct: 7 VSKAGYNKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I+ A V+D +S + G+ V L + + + QIVG E+D +G +S SPI Sbjct: 67 EILISNATVVDDDEISVHEVGVGSYVKLKDLEFDEIETLQIVGSTESDPDNGKISDESPI 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A + ++GDI V AP G +E+L++ Sbjct: 127 GKAALHMKVGDIFEVEAPAGMIKFEVLEI 155 >gi|197286719|ref|YP_002152591.1| transcription elongation factor GreB [Proteus mirabilis HI4320] gi|227355091|ref|ZP_03839502.1| transcription elongation factor [Proteus mirabilis ATCC 29906] gi|194684206|emb|CAR45694.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227164878|gb|EEI49725.1| transcription elongation factor [Proteus mirabilis ATCC 29906] Length = 159 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITRDGWHALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V+L E + + K +++VG E D +SI SP+ Sbjct: 67 SKRLDELKIVDPDPRQEGKVYFGAWVTL-EDDDENIKTFRLVGPDEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D +SV PGG Y +L + Sbjct: 126 ARALIGKKVDDEVSVQTPGGIVNYCVLSI 154 >gi|313892199|ref|ZP_07825792.1| transcription elongation factor GreA [Dialister microaerophilus UPII 345-E] gi|313119337|gb|EFR42536.1| transcription elongation factor GreA [Dialister microaerophilus UPII 345-E] Length = 162 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EGR+ EL Sbjct: 9 VTREGLEKMQRELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEGRILEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I R V+ G R+ +TV++ + + G ++ IVG E+D G +S SP Sbjct: 69 ETKI-RTAVLISQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKISNESPA 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 RAL+G +LGDI+ V+AP G Y+I Sbjct: 128 GRALMGSKLGDIVEVDAPTGIIKYKI 153 >gi|165975847|ref|YP_001651440.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307256431|ref|ZP_07538213.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165875948|gb|ABY68996.1| transcription elongation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306865061|gb|EFM96962.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 162 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE+ D I V+ P G+ Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146 >gi|238783101|ref|ZP_04627127.1| Transcription elongation factor greB [Yersinia bercovieri ATCC 43970] gi|238715897|gb|EEQ07883.1| Transcription elongation factor greB [Yersinia bercovieri ATCC 43970] Length = 165 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D ++ FGA V VE + +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENEAEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|238922488|ref|YP_002936001.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|238874160|gb|ACR73867.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] Length = 185 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 31 LTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 90 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S SP+ Sbjct: 91 EKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNESPV 150 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD ++V GE TY++L++ Sbjct: 151 GKALLGKKVGDTVTVETQVGELTYKVLEI 179 >gi|303249748|ref|ZP_07335952.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251936|ref|ZP_07533837.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651315|gb|EFL81467.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860628|gb|EFM92640.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 162 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE+ D I V+ P G+ Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146 >gi|284048763|ref|YP_003399102.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM 20731] gi|283952984|gb|ADB47787.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM 20731] Length = 172 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q E Sbjct: 1 MAEQTILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSG 118 GR+ LEN+I A++I + ++ + ++ G V + + + D++ Y +VG EAD + Sbjct: 61 GRILTLENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPP 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++G+++G ++ V P GE Y+I+ V Sbjct: 121 RISNESPVGKAILGQKVGAVVKVTTPIGELDYKIVAV 157 >gi|16766791|ref|NP_462406.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990706|ref|ZP_02571805.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168241643|ref|ZP_02666575.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447454|ref|YP_002047527.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264550|ref|ZP_03164624.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|25452998|sp|Q8ZLJ2|GREB_SALTY RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|16422062|gb|AAL22365.1| transcription elongation factor and transcript cleavage [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194405758|gb|ACF65977.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242805|gb|EDY25425.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205330768|gb|EDZ17532.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338738|gb|EDZ25502.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248658|emb|CBG26496.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995723|gb|ACY90608.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160046|emb|CBW19565.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914527|dbj|BAJ38501.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226553|gb|EFX51603.1| Transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131862|gb|ADX19292.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990355|gb|AEF09338.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD+ ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDRLKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150 >gi|213163601|ref|ZP_03349311.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 109 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/106 (44%), Positives = 77/106 (72%), Gaps = 1/106 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVG 109 ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVG Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVG 109 >gi|296122734|ref|YP_003630512.1| transcription elongation factor GreA [Planctomyces limnophilus DSM 3776] gi|296015074|gb|ADG68313.1| transcription elongation factor GreA [Planctomyces limnophilus DSM 3776] Length = 160 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P++ +G+DK+++E+R + ++ P+I +AI+EARA GDL ENAEY +E Q + R+ Sbjct: 5 PISREGYDKLKEEIRKLEHDDMPKIAEAIAEARAEGDLKENAEYHGQREEQGRLQARINS 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--S 123 L++ + ++D ST+ +AFG V++ + GD + Y+ VG E D S ++ I + Sbjct: 65 LKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMKILTT 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A AL+GK++ D +S+ P G YEI ++ Sbjct: 125 SPLASALLGKKVNDKVSIQVPRGTINYEITEI 156 >gi|146313451|ref|YP_001178525.1| transcription elongation factor GreB [Enterobacter sp. 638] gi|145320327|gb|ABP62474.1| transcription elongation factor GreB [Enterobacter sp. 638] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + ++D S ++ FGA V +E + GD K ++IVG E + +SI Sbjct: 62 VRYLTKCLEYLRIVDYSPQQEGKVFFGAWVE-IENDDGDTKRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAIVQTPSGEASWYVNEIEYV 156 >gi|307249608|ref|ZP_07531594.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858306|gb|EFM90376.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 162 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTHAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE+ D I V+ P G+ Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146 >gi|320539828|ref|ZP_08039487.1| transcription elongation factor [Serratia symbiotica str. Tucson] gi|320030014|gb|EFW12034.1| transcription elongation factor [Serratia symbiotica str. Tucson] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITRQGYSKLKQELDYLWREERPEVTKKVACAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +VI+ + ++ FGA V VE ++GD K ++IVG E + +SI +P+ Sbjct: 66 AQCLEQLKVINYAPQQEGKVFFGAWVE-VENDNGDVKRFRIVGYDEIFGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD VN P GE + I ++ Sbjct: 125 ARALLKKEVGDTAIVNTPQGEAWWHINKI 153 >gi|238788974|ref|ZP_04632764.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC 33641] gi|238723001|gb|EEQ14651.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC 33641] Length = 165 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDHELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE + +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENEAAEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL + Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILDI 154 >gi|24053876|gb|AAN44886.1| transcription elongation factor and transcript cleavage factor [Shigella flexneri 2a str. 301] gi|30043573|gb|AAP19293.1| transcription elongation factor and transcript cleavage factor [Shigella flexneri 2a str. 2457T] Length = 170 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEANWYV 162 >gi|317131159|ref|YP_004090473.1| transcription elongation factor GreA [Ethanoligenens harbinense YUAN-3] gi|315469138|gb|ADU25742.1| transcription elongation factor GreA [Ethanoligenens harbinense YUAN-3] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 86/155 (55%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T G K++QEL + E+R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MAKQYVLTDAGLKKLEQELEQLKTEKRKEIAEKIKVALSFGDLSENSEYDEAKNEQAMVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A +E ++ ++ID + + + G+ V + + + YQIVG EAD L+ Sbjct: 61 SRIATIEAMLKNVKLIDDDQLDTEAVNLGSKVQVFDVEFDETVEYQIVGSTEADPDQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ RAL+G ++GD + P G +++L + Sbjct: 121 SDESPVGRALLGHKVGDEVEAETPAGVLKFKVLNI 155 >gi|325860400|ref|ZP_08173512.1| transcription elongation factor GreA [Prevotella denticola CRIS 18C-A] gi|327312605|ref|YP_004328042.1| transcription elongation factor GreA [Prevotella denticola F0289] gi|325482058|gb|EGC85079.1| transcription elongation factor GreA [Prevotella denticola CRIS 18C-A] gi|326944307|gb|AEA20192.1| transcription elongation factor GreA [Prevotella denticola F0289] Length = 153 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 91/140 (65%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+ Sbjct: 1 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A+++D+S +S + + +TV + + + K Y IV + EA+++ +SI +PI Sbjct: 61 KMTVAQAKIVDLSRLSTEAVQIMSTVEMTDVKTKAKMKYTIVSETEANLKQNKISIKTPI 120 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 121 AQGLLNKKVGDEVEITIPRG 140 >gi|324538258|gb|ADY49528.1| Transcription elongation factor greA [Ascaris suum] Length = 148 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 86/129 (66%), Gaps = 3/129 (2%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 ++ +RP +++ I EA+++GDLSEN+EY +A+E Q+ E ++ EL+ II+ A++I Sbjct: 20 QYYVHTKRPEVVERIKEAKSFGDLSENSEYDSAREEQSFVEAKIKELDAIISNAQIIGAV 79 Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSISSPIARALIGKELGD 137 T S D + G+TV+ + S +K+ Y I VG D ++ +S ++P+ARAL+G ++GD Sbjct: 80 TNS-DTVVLGSTVTYEDTTSKEKQTYTILGVGANPLDQKNPSISTNTPVARALLGCKVGD 138 Query: 138 IISVNAPGG 146 I+++ AP G Sbjct: 139 IVTIEAPMG 147 >gi|322830974|ref|YP_004211001.1| transcription elongation factor GreB [Rahnella sp. Y9602] gi|321166175|gb|ADW71874.1| transcription elongation factor GreB [Rahnella sp. Y9602] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ EL + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKTELDFLWRDERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCMEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD + V P G+ T+ + ++ Sbjct: 125 ARALLKKEVGDSLVVTTPVGDATWYVNEI 153 >gi|152977979|ref|YP_001343608.1| transcription elongation factor GreB [Actinobacillus succinogenes 130Z] gi|150839702|gb|ABR73673.1| transcription elongation factor GreB [Actinobacillus succinogenes 130Z] Length = 158 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWNALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E D +S+ SP+ Sbjct: 67 MKRLEVLQIVDYHSRQEGKVFFGAWVEL-ENEDGEAKQYRIVGCDEFDPAKNWISVDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK + D + V P G+ T I ++ + Sbjct: 126 ARALIGKTVDDEVRVETPAGKVTLYINEIWY 156 >gi|284008800|emb|CBA75550.1| transcription elongation factor [Arsenophonus nasoniae] Length = 160 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL++ +EERP++ +A+SEA A GD SENAEY K+ + R+ L Sbjct: 6 ITREGWNKLEKELKFLWREERPKVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRIRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D R+ FGA V + ++N G K +++VG E + +SI+SP+ Sbjct: 66 SKRLEILKIVDPDPRQEGRVYFGAWVKVQDEN-GVIKVFRLVGADEFNPIKKWISINSPV 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+GK++ D ++VN P G TY IL++ Sbjct: 125 ARELLGKQIDDEVTVNTPNGIITYWILEI 153 >gi|256544717|ref|ZP_05472089.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC 51170] gi|256399606|gb|EEU13211.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC 51170] Length = 157 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q E R+A++E++I A Sbjct: 16 KLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIRHA 75 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 + + ST + D ++ G+ V + ++ + Y+IVG E++ G +S SP+ AL+GK Sbjct: 76 KTFEDST-NKDEVSVGSKVLIHDEEFDEDLEYKIVGTAESNPLEGFISNESPVGEALLGK 134 Query: 134 ELGDIISVNAPGGEKTYEILQV 155 + GD + V P G+ Y I ++ Sbjct: 135 KKGDKVEVVTPNGKCYYTIKEI 156 >gi|212711646|ref|ZP_03319774.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM 30120] gi|212685748|gb|EEB45276.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM 30120] Length = 161 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + +EL++ +EERP + +++SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWDALDKELKYLWKEERPLVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRIRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++ R+ FGA V L E ++ + + ++IVG E D +SI SP+ Sbjct: 67 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNENIRIFRIVGADEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V PGG+ TY IL++ Sbjct: 126 ARALIGKQVEDEVVVTTPGGKITYFILEI 154 >gi|113461635|ref|YP_719704.1| transcription elongation factor GreB [Haemophilus somnus 129PT] gi|112823678|gb|ABI25767.1| transcription elongation factor GreB [Haemophilus somnus 129PT] Length = 158 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V+L E G++K Y+IVG E D +SI SP+ Sbjct: 67 MKRLEVLQIVDYNPKQEGKVFFGAWVAL-EDEQGEEKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGKE+ D I V P G Sbjct: 126 ARALIGKEVDDEIKVATPSG 145 >gi|293374263|ref|ZP_06620591.1| transcription elongation factor GreA [Turicibacter sanguinis PC909] gi|325844834|ref|ZP_08168286.1| transcription elongation factor GreA [Turicibacter sp. HGF1] gi|292647096|gb|EFF65078.1| transcription elongation factor GreA [Turicibacter sanguinis PC909] gi|325489021|gb|EGC91409.1| transcription elongation factor GreA [Turicibacter sp. HGF1] Length = 156 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K Q EL QQ I + EARA GDLSENAEY AA+E Q + R+ EL Sbjct: 8 LTLEGIKKFQDELDHLQQVRMEEIKVKLQEARAQGDLSENAEYDAAREEQAMVYERIQEL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I+ A VI+ S + + I G+TVS E+ + ++ Y+IVG EA+ +S SPI Sbjct: 68 QYILKNAVVIE-SDENSEVITIGSTVSYQEEETDEQMTYKIVGSAEANPFEAKISNESPI 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+GK +GD+ V+ P G T IL V Sbjct: 127 AQALMGKRVGDVAMVSTPKGIVTVVILDV 155 >gi|157373311|ref|YP_001471911.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3] gi|157315685|gb|ABV34783.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3] Length = 163 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA + L E +G+ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRVEELQIVDYSPQQEGKVFFGAWIEL-ENEAGEIVQYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D + V P G K + I Sbjct: 125 ARALIGKQVDDEVVVPTPLGPKEWYI 150 >gi|260593365|ref|ZP_05858823.1| transcription elongation factor GreA [Prevotella veroralis F0319] gi|260534641|gb|EEX17258.1| transcription elongation factor GreA [Prevotella veroralis F0319] Length = 156 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 90/140 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+ Sbjct: 4 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A+++D+S +S + + +TV + + K Y IV + EA+++ +SI +PI Sbjct: 64 KMTVAQAKIVDVSRLSTEAVQIMSTVEMTNVKTKAKMKYTIVSETEANLKQNKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD + + P G Sbjct: 124 AQGLLNKKVGDEVEITIPRG 143 >gi|170718655|ref|YP_001783851.1| transcription elongation factor GreB [Haemophilus somnus 2336] gi|168826784|gb|ACA32155.1| transcription elongation factor GreB [Haemophilus somnus 2336] Length = 158 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V+L E G++K Y+IVG E D +SI SP+ Sbjct: 67 MKRLEVLQIVDYNPKQEGKVFFGAWVAL-EDEQGEEKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGKE+ D I V P G Sbjct: 126 ARALIGKEVDDEIKVATPSG 145 >gi|270264441|ref|ZP_06192707.1| transcription elongation factor GreB [Serratia odorifera 4Rx13] gi|270041577|gb|EFA14675.1| transcription elongation factor GreB [Serratia odorifera 4Rx13] Length = 157 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDNLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++D S ++ FGA V VE +G+ K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVE-VENENGECKRFRIVGYDEIFGRRDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD +VN P G+ + + ++ ++ Sbjct: 125 ARALLKKEVGDAATVNTPVGDALWYVNEIEYV 156 >gi|281421109|ref|ZP_06252108.1| transcription elongation factor GreA [Prevotella copri DSM 18205] gi|281404644|gb|EFB35324.1| transcription elongation factor GreA [Prevotella copri DSM 18205] Length = 155 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ EL+ ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ L Sbjct: 4 MSQEGYDKLVAELKQLVSVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID +S D + + V + + K Y IV + EA+++ G +SI +PI Sbjct: 64 KLTIAEAKIIDTKQLSTDSVQIMSKVEMTNMANKAKMTYTIVSESEANLKEGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++G++ + P G Sbjct: 124 AQGLLNKKVGEVAEIKIPRG 143 >gi|167854513|ref|ZP_02477294.1| transcription elongation factor GreB [Haemophilus parasuis 29755] gi|167854268|gb|EDS25501.1| transcription elongation factor GreB [Haemophilus parasuis 29755] Length = 162 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ +EERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQALDQELKYLWKEERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPSQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGK++ D I V P G+ Sbjct: 126 ARALIGKQIDDEIQVETPAGK 146 >gi|282859825|ref|ZP_06268919.1| putative transcription elongation factor GreA [Prevotella bivia JCVIHMP010] gi|282587445|gb|EFB92656.1| putative transcription elongation factor GreA [Prevotella bivia JCVIHMP010] Length = 156 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 89/140 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E+ Sbjct: 4 MSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILEM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + A+++D S +S D + +TV + ++ K Y IV + EA+++ G +SI +PI Sbjct: 64 KMTLAEAKIVDTSRLSTDAVQIMSTVEMTNVDNQTKMKYTIVSETEANIKQGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GD+ + P G Sbjct: 124 AQGLLNKKVGDVAEITIPRG 143 >gi|319938683|ref|ZP_08013047.1| transcription elongation factor greA [Streptococcus anginosus 1_2_62CV] gi|319811733|gb|EFW07999.1| transcription elongation factor greA [Streptococcus anginosus 1_2_62CV] Length = 160 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEVGETDEEVYMIVGAAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|310765656|gb|ADP10606.1| Transcription elongation factor greB [Erwinia sp. Ejp617] Length = 187 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 34 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDSRVRYL 93 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+ Sbjct: 94 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 152 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+GD +V P GE + + Sbjct: 153 ARALLKKEVGDAATVFTPAGEALWYV 178 >gi|293390854|ref|ZP_06635188.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951388|gb|EFE01507.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 160 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E G+ K Y+IVG E D + +SI SP+ Sbjct: 67 TKRLEVLQIVDYSPKQEGKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPANNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK+ D I+V+ P G K + + +W Sbjct: 126 ARALIGKQEDDEITVDTPAG-KIWLCVNRIW 155 >gi|303252629|ref|ZP_07338792.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247388|ref|ZP_07529435.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260861|ref|ZP_07542547.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302648597|gb|EFL78790.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856085|gb|EFM88241.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869428|gb|EFN01219.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 162 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRGGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE+ D I V+ P G+ Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146 >gi|289422572|ref|ZP_06424415.1| transcription elongation factor GreA [Peptostreptococcus anaerobius 653-L] gi|289157144|gb|EFD05766.1| transcription elongation factor GreA [Peptostreptococcus anaerobius 653-L] Length = 161 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 92/143 (64%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T +GFDK+++EL + R + + + A ++GDLSENAEY AK+ Q E R+ Sbjct: 8 EIILTQEGFDKLEEELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEERI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN++ +A +ID S++ D I G+ V + +++ ++ Y IVG EAD +G +S Sbjct: 68 IKLENMVRKAVIIDESSVDLDVITIGSIVRIYDEDFDEEVEYSIVGSAEADPYNGKISNE 127 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ++L+G ++GD++ VN P G Sbjct: 128 SPVGKSLLGSKIGDVVEVNVPDG 150 >gi|298373336|ref|ZP_06983325.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274 str. F0058] gi|298274388|gb|EFI15940.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274 str. F0058] Length = 156 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 4/153 (2%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G+ K+ E+ + +R I I+EAR GDLSENAEY AAKE Q + E ++A Sbjct: 4 VYMTEDGYKKLADEIAQMEAVDRKAISAQIAEARDKGDLSENAEYDAAKEAQGMLEMKIA 63 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSI 122 +++ + A +ID S + D + TV + KN +K+ Y +V + EA+++ G ++I Sbjct: 64 QMKETLANARIIDESKLKTDSVQILNTVRV--KNLANKQEMTYTLVSENEANIREGKLAI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++PI + L+GK++G++ +N P G +E++ + Sbjct: 122 NTPIGKGLLGKKIGEVAEINVPAGLMRFEVVSI 154 >gi|283480153|emb|CAY76069.1| Transcription elongation factor greB [Erwinia pyrifoliae DSM 12163] Length = 187 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 34 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 93 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+ Sbjct: 94 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 152 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+GD +V P GE + I Sbjct: 153 ARALLKKEVGDAATVFTPAGEALWYI 178 >gi|226309768|ref|YP_002769662.1| transcription elongation factor [Brevibacillus brevis NBRC 100599] gi|226092716|dbj|BAH41158.1| transcription elongation factor [Brevibacillus brevis NBRC 100599] Length = 158 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++QEL + +R + I EA ++GD+SEN+EY+ AK Q EGR+ L Sbjct: 8 LTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFIEGRILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A +I + ++ G+ V L + GD +Y IVG E+D + +S SP+ Sbjct: 68 EKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK G I+ VN P G YEIL + Sbjct: 128 GQALLGKAKGAIVDVNVPAGVIQYEILDI 156 >gi|169836893|ref|ZP_02870081.1| transcription elongation factor GreA [candidate division TM7 single-cell isolate TM7a] Length = 151 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 7/150 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++ EL + R I + I+EAR YGDLSENAEY AA+E Q + E R+AE+ Sbjct: 7 ITEAGKNELKDELETLKGR-RGEIAEKIAEARDYGDLSENAEYDAAREEQGIVETRIAEI 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGLVSISSP 125 ENI+ A +I +SG ++ G+ V L+ +G K Y +VG EAD G VS SP Sbjct: 66 ENILQNAAII-TGGVSG-QVGLGSVVELM---TGSKTAVYTVVGPVEADPLEGKVSNESP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 I AL+GK++ DI+ +N P G+ Y+I+ + Sbjct: 121 IGAALMGKKVDDIVEINTPKGKLEYKIISI 150 >gi|56415418|ref|YP_152493.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364348|ref|YP_002143985.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129675|gb|AAV79181.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095825|emb|CAR61398.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++ ++QEL + EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYETLKQELNYLWHEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150 >gi|301167994|emb|CBW27580.1| transcription elongation factor [Bacteriovorax marinus SJ] Length = 154 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K FD++ E+ + ERP+ + I+ A GD SENA+Y K+ + R+ L Sbjct: 1 MTPKCFDELSAEMENLLKVERPKTTQIIAWAAGNGDRSENADYIYGKKRLREIDRRLRFL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +EVID MS +++ F ATV+ VE + K Y IVG E +V G +S SPI Sbjct: 61 KKRLDDSEVIDPLKMSSEKVQFSATVT-VEDEEAEVKVYSIVGIDEVEVSKGKISWRSPI 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GKE+ DI+S++AP G EIL++ Sbjct: 120 GRALLGKEVEDIVSIDAPNGSFELEILKI 148 >gi|239637583|ref|ZP_04678555.1| transcription elongation factor GreA [Staphylococcus warneri L37603] gi|239596801|gb|EEQ79326.1| transcription elongation factor GreA [Staphylococcus warneri L37603] gi|330685471|gb|EGG97125.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU121] Length = 158 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ T + + G TV+ VE ++++YQIVG EAD G +S SP Sbjct: 68 IEHMIRNALIIE-DTGDNNTVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A ALIGK L D + V P GGE +I+ + Sbjct: 127 MASALIGKSLDDEVRVPLPNGGEMNVKIVDI 157 >gi|260910637|ref|ZP_05917297.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472 str. F0295] gi|260635237|gb|EEX53267.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472 str. F0295] Length = 154 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 88/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K+ ELR + ERP+ AI++AR GDLSEN+EY AAKE Q E ++ +L Sbjct: 4 MSQEGYEKLVAELRRLESIERPKASAAIADARDKGDLSENSEYDAAKEAQAHLEDKINKL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D S +S D + + V + + K +Y IV + EA+++ G ++I++PI Sbjct: 64 KVAINEAKIVDTSRLSTDAVQILSKVDMTNLTTKAKMSYTIVSESEANLKEGKIAITTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K+ GD + + P G Sbjct: 124 AQGLLNKKEGDEVEITIPRG 143 >gi|152997778|ref|YP_001342613.1| transcription elongation factor GreB [Marinomonas sp. MWYL1] gi|150838702|gb|ABR72678.1| transcription elongation factor GreB [Marinomonas sp. MWYL1] Length = 196 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G + EL++ +E+RP + + + EA A GD SENAEY K+L+ ++ R+ Sbjct: 42 ITQEGAQALLAELKYLWKEKRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDR-RVRY 100 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D +R+ FGA V+L E +G+ K Y+IVG E D S +SI SP Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTL-EDEAGNLKEYRIVGPDELDHHSSYISIDSP 159 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K+ GD + + GGEKTY I Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYII 186 >gi|325678470|ref|ZP_08158086.1| transcription elongation factor GreA [Ruminococcus albus 8] gi|324109838|gb|EGC04038.1| transcription elongation factor GreA [Ruminococcus albus 8] Length = 158 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ G+ K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL Sbjct: 7 VSKAGYAKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I+ A V+D +S I G+ V L + + + QIVG E+D +G +S SPI Sbjct: 67 EILISNATVVDDDEVSVHEIGVGSYVKLKDLELDEVETLQIVGSTESDPDNGKISDESPI 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A + ++GDI V AP G +E+L++ Sbjct: 127 GKAAMHMKVGDIFEVEAPAGMIKFEVLEI 155 >gi|306824895|ref|ZP_07458239.1| transcription elongation factor GreA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433106|gb|EFM36078.1| transcription elongation factor GreA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 160 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 85/129 (65%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GDI+++ P G Sbjct: 88 AIGKTVTIQEIGEEEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIVTIETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|224476708|ref|YP_002634314.1| transcription elongation factor GreA [Staphylococcus carnosus subsp. carnosus TM300] gi|254799567|sp|B9DNJ3|GREA_STACT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222421315|emb|CAL28129.1| putative transcription elongation factor,similar to GreA [Staphylococcus carnosus subsp. carnosus TM300] Length = 160 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 5/143 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +E++I A +I+ SGD + G TV+ +E G+++ YQIVG EAD +G +S Sbjct: 68 IEHMIRNALIIE---DSGDNNVVQIGKTVTFIEIPDGEEEVYQIVGSAEADAFNGKISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SPIA++LIGK L D + V P G Sbjct: 125 SPIAKSLIGKHLDDEVRVPLPNG 147 >gi|332289717|ref|YP_004420569.1| transcription elongation factor GreB [Gallibacterium anatis UMN179] gi|330432613|gb|AEC17672.1| transcription elongation factor GreB [Gallibacterium anatis UMN179] Length = 161 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + QEL++ + ERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRAGWNTLDQELKYLWKVERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D +I FGA V L E +GD K Y+IVG E D +SI SP+ Sbjct: 67 TKRLEVLQIVDYHPRQEGKIFFGAWVEL-ETENGDLKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK + D + V+ P G+ + + ++ + Sbjct: 126 ARALIGKSIDDEVKVDTPSGKIVFYVNKIWY 156 >gi|258647783|ref|ZP_05735252.1| transcription elongation factor GreA [Prevotella tannerae ATCC 51259] gi|260852234|gb|EEX72103.1| transcription elongation factor GreA [Prevotella tannerae ATCC 51259] Length = 177 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 88/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+ L + ERP AI+EAR GDLSEN+EY AAKE Q + E ++++L Sbjct: 27 MTQEGYDKMVARLHHMEAVERPAASAAIAEARDKGDLSENSEYDAAKEAQGMLEMKISQL 86 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S ++ + + +TV++ +G Y IV + EA+++ G +S +PI Sbjct: 87 KEAIATAKIIDTSKLNNETVQILSTVAMKNLKTGMVMTYTIVSESEANIREGKISSQTPI 146 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+G ++GD++ V P G Sbjct: 147 AQGLLGHKVGDVVEVKIPQG 166 >gi|259910054|ref|YP_002650410.1| transcription elongation factor GreB [Erwinia pyrifoliae Ep1/96] gi|224965676|emb|CAX57208.1| Transcription elongation factor [Erwinia pyrifoliae Ep1/96] Length = 159 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+ Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+GD +V P GE + I Sbjct: 125 ARALLKKEVGDAATVFTPAGEALWYI 150 >gi|193216587|ref|YP_001999829.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1] gi|259647648|sp|B3PM73|GREA_MYCA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193001910|gb|ACF07125.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1] Length = 159 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 92/146 (63%), Gaps = 5/146 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T+ F + Q+ L++ Q+ RP++I+ I EAR GDLSENAEY AA++ Q E Sbjct: 6 EKIYLTADSFKQYQERLQYLQEVLRPQVIEEIKEARNQGDLSENAEYDAARDKQATIENE 65 Query: 63 MAELENIITRAEVIDIST---MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + E+++I+ E+I T +S RI G+ VS+V N+QIVG + D +G Sbjct: 66 ITEIQHILDNYEIIKTQTNRQVSVVRI--GSNVSVVSLKDDTVINFQIVGALDTDPFNGK 123 Query: 120 VSISSPIARALIGKELGDIISVNAPG 145 +S +SP+A+A+IG++ G+++ V AP Sbjct: 124 ISNTSPLAKAVIGRKAGEVVEVEAPN 149 >gi|24376104|ref|NP_720147.1| transcription elongation factor GreB [Shewanella oneidensis MR-1] gi|24351133|gb|AAN57591.1|AE015894_11 transcription elongation factor GreB [Shewanella oneidensis MR-1] Length = 167 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E ++G++ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V P G K + I ++ Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKAWYINEI 153 >gi|32034733|ref|ZP_00134864.1| COG0782: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207870|ref|YP_001053095.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae L20] gi|126096662|gb|ABN73490.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 162 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +S+ SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISLDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE+ D I V+ P G+ Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146 >gi|172058075|ref|YP_001814535.1| transcription elongation factor GreA [Exiguobacterium sibiricum 255-15] gi|171990596|gb|ACB61518.1| transcription elongation factor GreA [Exiguobacterium sibiricum 255-15] Length = 157 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL + R +++ I AR++GDLSENAEY +AKE Q + EGR+A+L Sbjct: 8 MTLEGKANVENELNELKSVRRKEVVENIKIARSFGDLSENAEYDSAKEEQAMVEGRIAQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ +I + G TV+ + +++ Y IVG EAD +G +S SPI Sbjct: 68 EEMLRNVAIISEDEKDISVVGIGTTVTFLILEDNEEETYTIVGSAEADPFTGKISNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++L G +G+ +SV APGG+ +I + Sbjct: 128 AKSLFGHSVGEQVSVQAPGGDFAVKITSI 156 >gi|307254163|ref|ZP_07536008.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258626|ref|ZP_07540361.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862863|gb|EFM94812.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867283|gb|EFM99136.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 162 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE D I V+ P G+ Sbjct: 126 ARALIGKEADDEIKVDTPLGK 146 >gi|190149679|ref|YP_001968204.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245216|ref|ZP_07527307.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307262987|ref|ZP_07544609.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914810|gb|ACE61062.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853860|gb|EFM86074.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306871613|gb|EFN03335.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 162 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE D I V+ P G+ Sbjct: 126 ARALIGKEADDEIKVDTPLGK 146 >gi|42560844|ref|NP_975295.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400735|sp|Q6MTU9|GREA_MYCMS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|42492340|emb|CAE76937.1| transcription elongation factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321466|gb|ADK70109.1| putative transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 157 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKHLLKVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S T S + G+TV V K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120 Query: 120 VSISSPIARALIGKELGDIISV 141 +S SPIA+A+IGK++ + + Sbjct: 121 ISNESPIAKAIIGKKVNTTVEI 142 >gi|153853505|ref|ZP_01994885.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814] gi|149753660|gb|EDM63591.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814] Length = 160 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R I + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 8 LTYAGLKALEDELENLKVVKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G TV + + ++ +++VG EA+ G +S SP+ Sbjct: 68 EAILKNAEVVVEDEVDFDKINIGCTVKVFDITFDEEMEFKLVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD+++V G Y++L + Sbjct: 128 GQALMGKQIGDVVTVETQAGVMEYKVLDI 156 >gi|312968284|ref|ZP_07782494.1| transcription elongation factor GreB [Escherichia coli 2362-75] gi|312287109|gb|EFR15019.1| transcription elongation factor GreB [Escherichia coli 2362-75] Length = 158 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K + A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVIWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|139438508|ref|ZP_01772024.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC 25986] gi|133776047|gb|EBA39867.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC 25986] Length = 156 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T++G K+ +EL WR+ + I++ I EARA+GDLSEN+EY AAK+ Q N R+ Sbjct: 5 QIVLTAEGRQKLVEELAWREGDYAKEIVEDIKEARAFGDLSENSEYDAAKDKQAQNAARI 64 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AE++ I+ A+V + +GD ++ G+TVSL++ N G+ +VG E + +S Sbjct: 65 AEIQAILANAQV---AATTGDLTVSIGSTVSLIDPN-GEVMEVTLVGTTETNSLEHKISN 120 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 SP+ A+IG GD + V P G+ + Y I ++ Sbjct: 121 ESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKI 154 >gi|16762784|ref|NP_458401.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144271|ref|NP_807613.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62182005|ref|YP_218422.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616543|ref|YP_001590508.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549293|ref|ZP_02343052.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232640|ref|ZP_02657698.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235096|ref|ZP_02660154.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260773|ref|ZP_02682746.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465229|ref|ZP_02699121.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818685|ref|ZP_02830685.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443767|ref|YP_002042754.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471051|ref|ZP_03077035.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738363|ref|YP_002116445.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249725|ref|YP_002148426.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198242185|ref|YP_002217462.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387248|ref|ZP_03213860.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928487|ref|ZP_03219686.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858743|ref|YP_002245394.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213417934|ref|ZP_03351023.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426886|ref|ZP_03359636.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582289|ref|ZP_03364115.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610173|ref|ZP_03369999.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647809|ref|ZP_03377862.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852069|ref|ZP_03381601.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585297|ref|YP_002639096.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910491|ref|ZP_04654328.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289807151|ref|ZP_06537780.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824835|ref|ZP_06544278.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25452995|sp|Q8Z217|GREB_SALTI RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|25321439|pir||AC0998 transcription elongation factor GreB greB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505090|emb|CAD08111.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi] gi|29139908|gb|AAO71473.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129638|gb|AAX67341.1| transcription elongation factor and transcript cleavage [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365907|gb|ABX69675.1| hypothetical protein SPAB_04359 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402430|gb|ACF62652.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457415|gb|EDX46254.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713865|gb|ACF93086.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632511|gb|EDX50995.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213428|gb|ACH50825.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291264|gb|EDY30616.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936701|gb|ACH74034.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604346|gb|EDZ02891.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321920|gb|EDZ07118.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325500|gb|EDZ13339.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333162|gb|EDZ19926.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344627|gb|EDZ31391.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350295|gb|EDZ36926.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710546|emb|CAR34904.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469825|gb|ACN47655.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087918|emb|CBY97680.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614123|gb|EFY11059.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618015|gb|EFY14908.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625371|gb|EFY22197.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629836|gb|EFY26609.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632275|gb|EFY29026.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636374|gb|EFY33081.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643230|gb|EFY39799.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644768|gb|EFY41304.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651207|gb|EFY47591.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654925|gb|EFY51240.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659182|gb|EFY55434.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663117|gb|EFY59321.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668603|gb|EFY64756.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674593|gb|EFY70686.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678201|gb|EFY74262.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682542|gb|EFY78563.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684255|gb|EFY80261.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716493|gb|EFZ08064.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192190|gb|EFZ77422.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196384|gb|EFZ81536.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201815|gb|EFZ86878.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206357|gb|EFZ91318.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211950|gb|EFZ96777.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216856|gb|EGA01579.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222255|gb|EGA06638.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224269|gb|EGA08558.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228198|gb|EGA12329.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233535|gb|EGA17628.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237003|gb|EGA21070.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243782|gb|EGA27798.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245976|gb|EGA29963.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250752|gb|EGA34630.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255763|gb|EGA39513.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261379|gb|EGA44965.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267648|gb|EGA51130.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268529|gb|EGA51996.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625243|gb|EGE31588.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 157 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + GD ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150 >gi|320162389|ref|YP_004175614.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] gi|319996243|dbj|BAJ65014.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] Length = 155 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ K+Q+EL + + ++R I + + EA G+L ENAEY+AAK Q EGR+ EL Sbjct: 7 LTREGYAKLQEELEYLRTKKREEIAQRLHEAMEGGELIENAEYEAAKNEQAFVEGRIKEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A++I+ G+ + G+ V++ E+ + + + Y IVG EA+ G +S SP+ Sbjct: 67 EYLLASAKIIEEGGTHGNVVQVGSRVTIQEEGA-EPEVYTIVGAAEANPVLGRISNESPL 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIGK+ GD + V+AP G IL+V Sbjct: 126 GKALIGKKAGDNVQVDAPQGSFRVTILKV 154 >gi|307243775|ref|ZP_07525909.1| transcription elongation factor GreA [Peptostreptococcus stomatis DSM 17678] gi|306492851|gb|EFM64870.1| transcription elongation factor GreA [Peptostreptococcus stomatis DSM 17678] Length = 161 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 86/143 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T +G+DK++ EL + R + + + A ++GDLSENAEY AK+ Q E R+ Sbjct: 8 EIILTQEGYDKLESELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEERI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN+ A +ID S ++ D I G+ V + +++ ++ Y IVG EAD G +S Sbjct: 68 LKLENMTRVAVIIDESNVNLDIITVGSVVKIYDEDFDEELEYTIVGSAEADPYDGKISNE 127 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ +AL+G+ GD++ V P G Sbjct: 128 SPVGKALLGRAKGDVVEVTVPDG 150 >gi|74313909|ref|YP_312328.1| transcription elongation factor GreB [Shigella sonnei Ss046] gi|73857386|gb|AAZ90093.1| Transcription elongation factor [Shigella sonnei Ss046] gi|323164968|gb|EFZ50759.1| transcription elongation factor GreB [Shigella sonnei 53G] Length = 158 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + ++++ S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVNYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150 >gi|238797302|ref|ZP_04640803.1| Transcription elongation factor greB [Yersinia mollaretii ATCC 43969] gi|238718939|gb|EEQ10754.1| Transcription elongation factor greB [Yersinia mollaretii ATCC 43969] Length = 169 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTLAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D ++ FGA V VE + +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENEAEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|22127785|ref|NP_671208.1| transcription elongation factor GreB [Yersinia pestis KIM 10] gi|45439998|ref|NP_991537.1| transcription elongation factor GreB [Yersinia pestis biovar Microtus str. 91001] gi|51598055|ref|YP_072246.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 32953] gi|108809325|ref|YP_653241.1| transcription elongation factor GreB [Yersinia pestis Antiqua] gi|108814090|ref|YP_649857.1| transcription elongation factor GreB [Yersinia pestis Nepal516] gi|145597385|ref|YP_001161460.1| transcription elongation factor GreB [Yersinia pestis Pestoides F] gi|150260817|ref|ZP_01917545.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|165928050|ref|ZP_02223882.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. F1991016] gi|165936194|ref|ZP_02224763.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. IP275] gi|166010458|ref|ZP_02231356.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. E1979001] gi|166213294|ref|ZP_02239329.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399683|ref|ZP_02305207.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418839|ref|ZP_02310592.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425709|ref|ZP_02317462.1| transcription elongation factor GreB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468694|ref|ZP_02333398.1| transcription elongation factor GreB [Yersinia pestis FV-1] gi|170022432|ref|YP_001718937.1| transcription elongation factor GreB [Yersinia pseudotuberculosis YPIII] gi|186897255|ref|YP_001874367.1| transcription elongation factor GreB [Yersinia pseudotuberculosis PB1/+] gi|218927346|ref|YP_002345221.1| transcription elongation factor GreB [Yersinia pestis CO92] gi|229836384|ref|ZP_04456551.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|229839991|ref|ZP_04460150.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842072|ref|ZP_04462227.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229904627|ref|ZP_04519738.1| transcription elongation factor [Yersinia pestis Nepal516] gi|270488160|ref|ZP_06205234.1| transcription elongation factor GreB [Yersinia pestis KIM D27] gi|294502225|ref|YP_003566287.1| transcription elongation factor GreB [Yersinia pestis Z176003] gi|25452997|sp|Q8ZJH2|GREB_YERPE RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21960914|gb|AAM87459.1|AE013996_4 transcription elongation factor [Yersinia pestis KIM 10] gi|45434853|gb|AAS60414.1| transcription elongation factor [Yersinia pestis biovar Microtus str. 91001] gi|51591337|emb|CAH23003.1| transcription elongation factor [Yersinia pseudotuberculosis IP 32953] gi|108777738|gb|ABG20257.1| transcription elongation factor GreB [Yersinia pestis Nepal516] gi|108781238|gb|ABG15296.1| transcription elongation factor GreB [Yersinia pestis Antiqua] gi|115345957|emb|CAL18821.1| transcription elongation factor [Yersinia pestis CO92] gi|145209081|gb|ABP38488.1| transcription elongation factor GreB [Yersinia pestis Pestoides F] gi|149290225|gb|EDM40302.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|165915808|gb|EDR34416.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. IP275] gi|165919999|gb|EDR37300.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990548|gb|EDR42849.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205592|gb|EDR50072.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962833|gb|EDR58854.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052187|gb|EDR63595.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055399|gb|EDR65193.1| transcription elongation factor GreB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748966|gb|ACA66484.1| transcription elongation factor GreB [Yersinia pseudotuberculosis YPIII] gi|186700281|gb|ACC90910.1| transcription elongation factor GreB [Yersinia pseudotuberculosis PB1/+] gi|229678745|gb|EEO74850.1| transcription elongation factor [Yersinia pestis Nepal516] gi|229690382|gb|EEO82436.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229696357|gb|EEO86404.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706452|gb|EEO92459.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|262360304|gb|ACY57025.1| transcription elongation factor GreB [Yersinia pestis D106004] gi|262364255|gb|ACY60812.1| transcription elongation factor GreB [Yersinia pestis D182038] gi|270336664|gb|EFA47441.1| transcription elongation factor GreB [Yersinia pestis KIM D27] gi|294352684|gb|ADE63025.1| transcription elongation factor GreB [Yersinia pestis Z176003] gi|320013271|gb|ADV96842.1| transcription elongation factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 171 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE +++ +++VG E D +SI SP+ Sbjct: 67 AKRLEVLKIVDPDPRQEGKVFFGAWVR-VENEQEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|225572778|ref|ZP_03781533.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM 10507] gi|225039835|gb|EEG50081.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM 10507] Length = 160 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYAGLKNLEEELHDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I+ G V L + ++ ++IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEDEVDLDKISVGCKVKLYDYEYEEEIEFKIVGSTEANSLQGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG ++ D++ V P G Y++L++ Sbjct: 128 GKALIGAKVDDVVKVEMPAGMVEYKVLEI 156 >gi|154499802|ref|ZP_02037840.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC 29799] gi|150271400|gb|EDM98657.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 89/155 (57%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + ++ + + +++ EL + + + I EAR++GDLSEN+EY AK Q Sbjct: 1 MAKEFKLSPERWKELKDELVYLKTVREKEVADQIKEARSFGDLSENSEYDEAKNEQGKLY 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+ENI+ VI+ G + G+ + +++ ++ +Y++VG QEAD +G + Sbjct: 61 SRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP RAL+GK +G+ + V AP G Y++L + Sbjct: 121 SEDSPFGRALLGKSVGEDVVVEAPAGALHYKVLSI 155 >gi|153950771|ref|YP_001402929.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 31758] gi|152962266|gb|ABS49727.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 31758] Length = 171 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE +++ +++VG E D +SI SP+ Sbjct: 67 AKRLEVLKIVDPDPRQEGKVFFGAWVR-VENEQEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154 >gi|258646084|ref|ZP_05733553.1| transcription elongation factor GreA [Dialister invisus DSM 15470] gi|260403459|gb|EEW97006.1| transcription elongation factor GreA [Dialister invisus DSM 15470] Length = 160 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K+Q+EL + + R + + + EA A GDLSEN+EY AK Q+ EGR+ EL Sbjct: 9 VTKEGLEKLQKELDELRTKTRGEVAQRLKEAIAMGDLSENSEYDDAKNQQSFVEGRIKEL 68 Query: 67 ENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E I AE+ID S G R+ G TV++ ++ +IVG E+D G +S S Sbjct: 69 EQQIRTAEIID-SGKKGRKSRVDVGMTVTIEALEDHVEETVKIVGSTESDPFEGKISNES 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ RAL+G + GDI+ AP G Y+++++ Sbjct: 128 PVGRALMGAKAGDIVEAEAPSGVVKYKVIKI 158 >gi|83643478|ref|YP_431913.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396] gi|83631521|gb|ABC27488.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396] Length = 167 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +TS+G +++EL++ + +RP + KA+SEA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGDRSENAEYIYGKKQLREIDR-RVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +V+D R+ FGA V+L E GD+ Y+IVG E Q G +S+ SP Sbjct: 74 LTKRLDELKVVDRPPEDQSRVYFGAWVTL-EDEEGDEHRYRIVGSDEIGAQKGYISVDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +A+AL+ K++ D V P G K+Y ++++ + Sbjct: 133 MAKALLKKQVDDEAIVTTPSGRKSYFVIEIEYC 165 >gi|313889156|ref|ZP_07822812.1| transcription elongation factor GreA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844896|gb|EFR32301.1| transcription elongation factor GreA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 157 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 86/155 (55%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 1 MEKDIFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE ++ A++ID ++ D + G+ V + E ++ ++ Y IVG EAD G + Sbjct: 61 ERIAKLEMMVRNAKIIDEKDLNTDVVNIGSNVKVRELDTMEEDEYTIVGSAEADPLEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ LIG +GD++ V P G YEI + Sbjct: 121 SNESPVGSKLIGNRVGDVVEVEVPDGIIKYEICGI 155 >gi|295110734|emb|CBL24687.1| transcription elongation factor GreA [Ruminococcus obeum A2-162] Length = 160 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYAGLKKLEDELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + DRI+ G V + + ++ ++VG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEDEVDLDRISVGCKVKVYDYEFEEEMELKLVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG GD++ V P G Y++L++ Sbjct: 128 GKALIGAHTGDVVEVEMPMGIMKYKVLEI 156 >gi|46198565|ref|YP_004232.1| transcription elongation factor greA [Thermus thermophilus HB27] gi|55980591|ref|YP_143888.1| transcription elongation factor GreA [Thermus thermophilus HB8] gi|18034649|gb|AAL57613.1|AF456236_1 transcription cleavage factor GreA [Thermus thermophilus] gi|46196187|gb|AAS80605.1| transcription elongation factor greA [Thermus thermophilus HB27] gi|55772004|dbj|BAD70445.1| transcription elongation factor GreA [Thermus thermophilus HB8] Length = 155 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 93/155 (60%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+ ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE++++RA +++ + D++A G V L E +G++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLSRAVIVENGSF--DQVALGCQVEL-ETETGERLSLAIVGSHEADIFSGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 118 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 152 >gi|315634956|ref|ZP_07890237.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC 33393] gi|315476218|gb|EFU66969.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC 33393] Length = 160 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 8 ITRQGWNVLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 68 TKRLEVLQIVDYSPKQEGKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPAKNWISIDSPV 126 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGKE D I+V P G+ Sbjct: 127 ARALIGKEEDDEITVETPSGK 147 >gi|332654125|ref|ZP_08419869.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] gi|332517211|gb|EGJ46816.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] Length = 167 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K + +++EL R+ RP++++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTQKDLELMRKELDHRRIVLRPQLLEAVKEARAFGDLSENFEYKAAKQEKNRNESRIRFL 64 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 EN+I A V IS SG D++ V++ ++ +++ YQIV D GL+S SP Sbjct: 65 ENMIKTAVV--ISDQSGSDQVGLYDKVTVYMEDDDEEEVYQIVTTMRQDALKGLISKESP 122 Query: 126 IARALIGKELGDIISV 141 + R L+G+ +GD + + Sbjct: 123 VGRCLLGRRVGDRVHI 138 >gi|292489910|ref|YP_003532800.1| transcription elongation factor greB [Erwinia amylovora CFBP1430] gi|292900946|ref|YP_003540315.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291200794|emb|CBJ47928.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291555347|emb|CBA23711.1| Transcription elongation factor greB [Erwinia amylovora CFBP1430] gi|312174094|emb|CBX82347.1| Transcription elongation factor greB [Erwinia amylovora ATCC BAA-2158] Length = 159 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVAWAASLGDRSENADYQYNKKRLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+ Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+GD +V P GE + + Sbjct: 125 ARALLKKEVGDAATVFTPAGEALWYV 150 >gi|238792874|ref|ZP_04636504.1| Transcription elongation factor greB [Yersinia intermedia ATCC 29909] gi|238727728|gb|EEQ19252.1| Transcription elongation factor greB [Yersinia intermedia ATCC 29909] Length = 165 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D ++ FGA V VE +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENELEEQRIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL++ Sbjct: 126 ARALIGKQVEDEVTVQTPNGEATYWILEI 154 >gi|221194505|ref|ZP_03567562.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626] gi|221185409|gb|EEE17799.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626] Length = 159 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE R+ Sbjct: 7 IVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNESRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E+ I++ A+V++ +A G TV L E G K Y IVG E + +S S Sbjct: 67 EIRQILSVAKVVEGDKKRKITVAIGTTVEL-EDAKGKKAKYVIVGTTETNSLEHKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQV 155 P ALIG + GD + P G K Y I + Sbjct: 126 PAGEALIGHKKGDEVEFTTPNGNVKKYTITAI 157 >gi|307565015|ref|ZP_07627532.1| putative transcription elongation factor GreA [Prevotella amnii CRIS 21A-A] gi|307346328|gb|EFN91648.1| putative transcription elongation factor GreA [Prevotella amnii CRIS 21A-A] Length = 156 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 89/140 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E+ Sbjct: 4 MSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILEM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + A+++D S +S + + +TV + ++ K Y IV + EA+++ G +SI +PI Sbjct: 64 KKTLAEAKIVDTSRLSTEAVQILSTVEMTNIDNQTKMTYTIVSETEANIKQGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++GDI + P G Sbjct: 124 AQGLLNKKVGDIAEITIPRG 143 >gi|257784990|ref|YP_003180207.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469] gi|257473497|gb|ACV51616.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469] Length = 159 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE R+ Sbjct: 7 IVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNESRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E+ I++ A+V++ + +A G TV L + G Y IVG E + +S S Sbjct: 67 EIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-GKTTKYVIVGTTETNSLEHKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQV 155 P ALIG + GD + P G+ K Y I+ + Sbjct: 126 PAGEALIGHKKGDEVEFTTPNGKVKKYTIISI 157 >gi|269140621|ref|YP_003297322.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267986282|gb|ACY86111.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304560408|gb|ADM43072.1| Transcription elongation factor GreB [Edwardsiella tarda FL6-60] Length = 158 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L ++ +++D S ++ FGA V VE GD K ++IVG E ++ +SI Sbjct: 62 VRYLRKCMSILKIVDYSPQQDGKVFFGAWVE-VENERGDIKRFRIVGYDEIFGRNDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD +V P G+ + + Sbjct: 121 DSPMARALLKKEVGDAATVATPQGDAEWYV 150 >gi|120596941|ref|YP_961515.1| transcription elongation factor GreB [Shewanella sp. W3-18-1] gi|120557034|gb|ABM22961.1| transcription elongation factor GreB [Shewanella sp. W3-18-1] gi|319424532|gb|ADV52606.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200] Length = 167 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E ++G++ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V P G K + I ++ Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYINEI 153 >gi|330447154|ref|ZP_08310804.1| transcription elongation factor GreB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491345|dbj|GAA05301.1| transcription elongation factor GreB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 160 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G++K++QEL +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 VTREGYNKLKQELDSLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +VID S ++ FGA V +E + GD+K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLDVLKVIDYSPQQDGKVFFGAWVE-IENDDGDQKTFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+ D I V P G+K + I Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFI 150 >gi|330998037|ref|ZP_08321868.1| transcription elongation factor GreA [Paraprevotella xylaniphila YIT 11841] gi|329569338|gb|EGG51118.1| transcription elongation factor GreA [Paraprevotella xylaniphila YIT 11841] Length = 155 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 92/151 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +L Sbjct: 4 MSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +PI Sbjct: 64 KAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMTYTIVSETEANLKEGKISVQTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G EI + + Sbjct: 124 AQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154 >gi|323703648|ref|ZP_08115290.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans DSM 574] gi|323531363|gb|EGB21260.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans DSM 574] Length = 158 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 89/152 (58%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G ++++EL + +R ++ + I +A +GD+SEN+EY+ AK Q EGR+ Sbjct: 6 VMLTVTGLKQLEEELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFIEGRIL 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD +S S Sbjct: 66 TLEKMLRNAKIIDDENLGNEVVSLGSKVRLKDLEFGDEFEYTIVGSVEADPDKNKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ +A++G+ G I+ V+ P G YEIL ++ Sbjct: 126 PVGKAILGQPKGSIVEVSVPAGVLKYEILDII 157 >gi|291544387|emb|CBL17496.1| transcription elongation factor GreA [Ruminococcus sp. 18P13] Length = 156 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ +G++K++Q+L + R + + + EAR++GDLSENAEY AK Q + E + Sbjct: 3 KKQMSREGYEKLEQKLSYLITVRRAEVAQKLKEARSFGDLSENAEYDEAKNEQGILEAEI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL+ + AE+++ +S D I G+ + + + + QIVG EA+ + G +S Sbjct: 63 AELQITLENAEIVEDDNISVDEIGMGSIIEIRRVGTDKIERLQIVGTNEANFKEGKISDE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI ++ + K +GD V AP GE +E++ + Sbjct: 123 SPIGKSALKKRVGDTFLVEAPAGELEFEVVAI 154 >gi|169824685|ref|YP_001692296.1| transcription elongation factor [Finegoldia magna ATCC 29328] gi|302380203|ref|ZP_07268675.1| transcription elongation factor GreA [Finegoldia magna ACS-171-V-Col3] gi|303234962|ref|ZP_07321586.1| transcription elongation factor GreA [Finegoldia magna BVS033A4] gi|254799559|sp|B0S216|GREA_FINM2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167831490|dbj|BAG08406.1| transcription elongation factor [Finegoldia magna ATCC 29328] gi|302311986|gb|EFK93995.1| transcription elongation factor GreA [Finegoldia magna ACS-171-V-Col3] gi|302493817|gb|EFL53599.1| transcription elongation factor GreA [Finegoldia magna BVS033A4] Length = 159 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 1/147 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ LEN++ A+VI D + G+TV+ N + YQIVG E+D +G Sbjct: 61 EERINYLENLLLHAKVIQDDENQKDVVTVGSTVTYKNLNLNKEMTYQIVGTAESDPFAGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SP +AL+ ++GD V PGG Sbjct: 121 ISNESPTGKALLNLKVGDTTKVETPGG 147 >gi|188535334|ref|YP_001909131.1| transcription elongation factor GreB [Erwinia tasmaniensis Et1/99] gi|188030376|emb|CAO98267.1| Transcription elongation factor GreB [Erwinia tasmaniensis Et1/99] Length = 159 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+ Sbjct: 66 TKCLEQLRIVDYSPQQEGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD +V P GE + + + +I Sbjct: 125 ARALLKKEVGDAATVLTPAGEALWYVNDIRYI 156 >gi|52426263|ref|YP_089400.1| transcription elongation factor GreB [Mannheimia succiniciproducens MBEL55E] gi|52308315|gb|AAU38815.1| GreA protein [Mannheimia succiniciproducens MBEL55E] Length = 158 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRAGWNVLDQELKYLWKDERPKVTQAVSDAAAMGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA + L E SG+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYNPKQEGKVFFGAWIEL-ENESGEIKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGK++ D + V P G+ Sbjct: 126 ARALIGKQIDDEVRVETPAGK 146 >gi|167758613|ref|ZP_02430740.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704] gi|167663809|gb|EDS07939.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704] Length = 160 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 8 LTYAGLKALEDELENLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + ++I G TV + +K ++ ++IVG EA+ G +S SP+ Sbjct: 68 EGILKNAEVVVEDEVDYNKINVGCTVKVFDKTFDEEMEFKIVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG ++GD + V G YE+L + Sbjct: 128 GQALIGCKVGDTVEVETQAGIMEYEVLNI 156 >gi|210623236|ref|ZP_03293675.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275] gi|210153773|gb|EEA84779.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275] Length = 159 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 90/151 (59%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +GFDK++ EL + R + + + A +YGDLSENAEY AK+ Q E ++ Sbjct: 7 ILLTQEGFDKLEAELEELKIVGRKDVAEKLKVAISYGDLSENAEYDEAKKEQAELEEKIL 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++EN+I +A +ID ++ ++ G+ V L + + ++ Y IVG EAD +G +S S Sbjct: 67 KIENMIRKATIIDEESIDLSKVTAGSIVKLYDYDFEEEVTYTIVGSTEADPFAGKISNES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI +A++GK GD + V P G Y+IL + Sbjct: 127 PIGKAILGKSEGDEVEVQVPDGVVKYKILSI 157 >gi|281421867|ref|ZP_06252866.1| transcription elongation factor GreA [Prevotella copri DSM 18205] gi|281404109|gb|EFB34789.1| transcription elongation factor GreA [Prevotella copri DSM 18205] Length = 154 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 80/140 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+D++ EL+ E P + AI+EAR GDLSEN EY AAK Q R++ Sbjct: 4 MSQEGYDELVAELQHMVNVELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRISFK 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A VID S + D + + + + + NY IV EAD+ SG +SI SPI Sbjct: 64 QKVLENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GK+ G+ + V P G Sbjct: 124 AKALLGKKAGEEVMVKVPAG 143 >gi|219872157|ref|YP_002476532.1| transcription elongation factor GreB [Haemophilus parasuis SH0165] gi|219692361|gb|ACL33584.1| transcription elongation factor GreB [Haemophilus parasuis SH0165] Length = 159 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQVLDQELKYLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPTQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFDPAKQWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK++ D I V P G+ T I ++ + Sbjct: 126 ARALIGKQIDDEIQVETPVGKVTLYINKIWY 156 >gi|315652680|ref|ZP_07905655.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] gi|315485058|gb|EFU75465.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 8 LTYEGLKNLEEELQDLKVNKRKEIAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AEV+ + D I G V +++K+ ++ +++IVG EAD +G +S SP+ Sbjct: 68 EALLKNAEVVVEDEVDLDTIGIGCKVKILDKDFDEELDFKIVGSTEADSLAGKISNESPL 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++G+ V G Y +L++ Sbjct: 128 GKALLGKKIGETAEVETQAGVSEYMVLEI 156 >gi|152989359|ref|YP_001347666.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7] gi|150964517|gb|ABR86542.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7] Length = 168 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADANRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V P GEK + ++++ Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162 >gi|113972137|ref|YP_735930.1| transcription elongation factor GreB [Shewanella sp. MR-4] gi|113886821|gb|ABI40873.1| transcription elongation factor GreB [Shewanella sp. MR-4] Length = 167 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E +G++ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGERVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D + V P G K + I Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYI 150 >gi|226944394|ref|YP_002799467.1| transcription elongation factor GreB [Azotobacter vinelandii DJ] gi|226719321|gb|ACO78492.1| transcription elongation factor protein [Azotobacter vinelandii DJ] Length = 165 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L E G++ Y+IVG E D++ L+SI +P+ Sbjct: 75 TKRLEKLQVVGERPADLNKVYFGAWVTL-EDEDGEQVRYRIVGPDELDLKQNLISIDAPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V P GEKT+ ++ + Sbjct: 134 ARALVGKELDAEVRVPTPTGEKTWYLVAI 162 >gi|254507342|ref|ZP_05119478.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16] gi|219549802|gb|EED26791.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D S ++ FGA V +E GD K+++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEDGDVKSFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ KE+ D SV P G K + + ++ Sbjct: 124 PMARALLKKEVDDEFSVKTPDGFKDWFVNRI 154 >gi|253580948|ref|ZP_04858210.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847790|gb|EES75758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYAGLKKLEEELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I+ G V + + + +IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEDEVDLDKISVGCKVKVHDFEFEEDIELKIVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG GD++ V P G Y++L++ Sbjct: 128 GKALIGAHTGDVVEVEMPAGIMKYKVLEI 156 >gi|161505931|ref|YP_001573043.1| transcription elongation factor GreB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867278|gb|ABX23901.1| hypothetical protein SARI_04112 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 157 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D + ++ FGA V +E + GD ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYAPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150 >gi|238921494|ref|YP_002935009.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146] gi|238871063|gb|ACR70774.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146] Length = 158 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L ++ +++D + ++ FGA V VE GD K ++IVG E ++ +SI Sbjct: 62 VRYLRKCMSILKIVDYAPQQNGKVFFGAWVE-VENERGDIKRFRIVGYDEIFGRNDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD +V P G+ + + Sbjct: 121 DSPMARALLKKEVGDAATVATPQGDAEWYV 150 >gi|308188422|ref|YP_003932553.1| Transcription elongation factor greB [Pantoea vagans C9-1] gi|308058932|gb|ADO11104.1| Transcription elongation factor greB [Pantoea vagans C9-1] Length = 157 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V +E + GD K ++IVG E + +SI SP+ Sbjct: 66 TKSLEQLRIVDYSPQQDGKVFFGAWVE-IENDEGDLKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGG 146 ARAL+ KE+GD +V P G Sbjct: 125 ARALLKKEVGDAATVETPLG 144 >gi|119776641|ref|YP_929381.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119769141|gb|ABM01712.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 165 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG++ + +EL++ +E RP I + EA A GD SENA+Y K L + R+ L Sbjct: 8 ITRKGWEALDKELKYLWKEYRPEITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V L E + G Y+IVG E D + G ++I SP+ Sbjct: 68 IKRLEVLKIVDYSPQQEGKVFFGAWVEL-ENDEGAVVRYRIVGKDEIDTKKGYITIDSPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D + V P G K + I ++ Sbjct: 127 ARALIGKQVDDEVVVQTPSGRKEWFINEI 155 >gi|302336411|ref|YP_003801618.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084] gi|301320251|gb|ADK68738.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084] Length = 157 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 6/158 (3%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K I +T +G K+ EL +R+ E R I++ I EAR +GDLSENAEY AAKE Q+ N Sbjct: 1 MANKEIILTPEGRQKLVDELAYREGERRDEIVERIKEARGFGDLSENAEYDAAKEEQSQN 60 Query: 60 EGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ E+ I+ A+V++ G+ ++ G TV L E G K ++ IVG E + Sbjct: 61 ESRVNEIRQILVAAKVVERG--EGELSVSIGTTVEL-EDAKGKKTSFTIVGTTETNSLEH 117 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 +S SP LIG +GD +S P G+ +TY ++ + Sbjct: 118 RISNESPAGAVLIGHVVGDEVSFTTPNGKLRTYTVVNI 155 >gi|304397825|ref|ZP_07379701.1| GreA/GreB family elongation factor [Pantoea sp. aB] gi|304354536|gb|EFM18907.1| GreA/GreB family elongation factor [Pantoea sp. aB] Length = 157 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V +E + GD K ++IVG E + +SI SP+ Sbjct: 66 TKSLEQLRIVDYSPQQDGKVFFGAWVE-IENDEGDLKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGG 146 ARAL+ KE+GD +V P G Sbjct: 125 ARALLKKEVGDAATVETPVG 144 >gi|324009407|gb|EGB78626.1| transcription elongation factor GreB [Escherichia coli MS 57-2] Length = 170 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P G ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGGASWYV 162 >gi|15924600|ref|NP_372134.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu50] gi|15927190|ref|NP_374723.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus N315] gi|21283289|ref|NP_646377.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MW2] gi|49483855|ref|YP_041079.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA252] gi|49486443|ref|YP_043664.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MSSA476] gi|57652001|ref|YP_186505.1| transcription elongation factor [Staphylococcus aureus subsp. aureus COL] gi|82751210|ref|YP_416951.1| transcription elongation factor GreA [Staphylococcus aureus RF122] gi|87161697|ref|YP_494262.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195419|ref|YP_500223.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268091|ref|YP_001247034.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH9] gi|150394159|ref|YP_001316834.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH1] gi|151221723|ref|YP_001332545.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979928|ref|YP_001442187.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu3] gi|161509837|ref|YP_001575496.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141120|ref|ZP_03565613.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315240|ref|ZP_04838453.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733139|ref|ZP_04867304.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TCH130] gi|255006395|ref|ZP_05144996.2| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425734|ref|ZP_05602158.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428395|ref|ZP_05604793.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431033|ref|ZP_05607412.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 68-397] gi|257433719|ref|ZP_05610077.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus E1410] gi|257436634|ref|ZP_05612678.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M876] gi|257793685|ref|ZP_05642664.1| transcription elongation factor greA [Staphylococcus aureus A9781] gi|258411016|ref|ZP_05681296.1| transcription elongation factor GreA [Staphylococcus aureus A9763] gi|258420182|ref|ZP_05683137.1| transcription elongation factor greA [Staphylococcus aureus A9719] gi|258424036|ref|ZP_05686918.1| transcription elongation factor greA [Staphylococcus aureus A9635] gi|258438184|ref|ZP_05689468.1| transcription elongation factor greA [Staphylococcus aureus A9299] gi|258443647|ref|ZP_05691986.1| transcription elongation factor greA [Staphylococcus aureus A8115] gi|258446854|ref|ZP_05695008.1| transcription elongation factor greA [Staphylococcus aureus A6300] gi|258448768|ref|ZP_05696880.1| transcription elongation factor greA [Staphylococcus aureus A6224] gi|258450563|ref|ZP_05698625.1| transcription elongation factor greA [Staphylococcus aureus A5948] gi|258453587|ref|ZP_05701565.1| transcription elongation factor greA [Staphylococcus aureus A5937] gi|262048605|ref|ZP_06021488.1| transcription elongation factor [Staphylococcus aureus D30] gi|262051265|ref|ZP_06023489.1| transcription elongation factor [Staphylococcus aureus 930918-3] gi|269203236|ref|YP_003282505.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ED98] gi|282893113|ref|ZP_06301347.1| transcription elongation factor greA [Staphylococcus aureus A8117] gi|282904191|ref|ZP_06312079.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus C160] gi|282906017|ref|ZP_06313872.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908929|ref|ZP_06316747.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911247|ref|ZP_06319049.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914415|ref|ZP_06322201.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M899] gi|282916879|ref|ZP_06324637.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus D139] gi|282919385|ref|ZP_06327120.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C427] gi|282920157|ref|ZP_06327882.1| transcription elongation factor greA [Staphylococcus aureus A9765] gi|282924710|ref|ZP_06332378.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C101] gi|282928244|ref|ZP_06335849.1| transcription elongation factor greA [Staphylococcus aureus A10102] gi|283770684|ref|ZP_06343576.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus H19] gi|283958371|ref|ZP_06375822.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus A017934/97] gi|284024667|ref|ZP_06379065.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 132] gi|293503490|ref|ZP_06667337.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 58-424] gi|293510507|ref|ZP_06669213.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M809] gi|293531047|ref|ZP_06671729.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M1015] gi|294848639|ref|ZP_06789385.1| transcription elongation factor greA [Staphylococcus aureus A9754] gi|295406732|ref|ZP_06816537.1| transcription elongation factor greA [Staphylococcus aureus A8819] gi|295428187|ref|ZP_06820819.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276729|ref|ZP_06859236.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MR1] gi|297207670|ref|ZP_06924105.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245686|ref|ZP_06929551.1| transcription elongation factor greA [Staphylococcus aureus A8796] gi|297590846|ref|ZP_06949484.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MN8] gi|300911752|ref|ZP_07129195.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH70] gi|304380793|ref|ZP_07363460.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037220|sp|P64284|GREA_STAAW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54037228|sp|P99156|GREA_STAAN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041330|sp|P64283|GREA_STAAM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56748966|sp|Q6G8V9|GREA_STAAS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56749020|sp|Q6GG93|GREA_STAAR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71152090|sp|Q5HFF2|GREA_STAAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123291785|sp|Q2FXW7|GREA_STAA8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123722377|sp|Q2FGB6|GREA_STAA3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123740964|sp|Q2YT68|GREA_STAAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200745|sp|A7X319|GREA_STAA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|172048917|sp|A6QHF1|GREA_STAAE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042249|sp|A6U279|GREA_STAA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042250|sp|A5ITD5|GREA_STAA9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042251|sp|A8Z4E8|GREA_STAAT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13701408|dbj|BAB42702.1| transcription elongation factor [Staphylococcus aureus subsp. aureus N315] gi|14247381|dbj|BAB57772.1| transcription elongation factor [Staphylococcus aureus subsp. aureus Mu50] gi|21204729|dbj|BAB95425.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MW2] gi|49241984|emb|CAG40681.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49244886|emb|CAG43347.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57286187|gb|AAW38281.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus COL] gi|82656741|emb|CAI81170.1| transcription elongation factor [Staphylococcus aureus RF122] gi|87127671|gb|ABD22185.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202977|gb|ABD30787.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741160|gb|ABQ49458.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH9] gi|149946611|gb|ABR52547.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH1] gi|150374523|dbj|BAF67783.1| transcription elongation factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156722063|dbj|BAF78480.1| transcription elongation factor [Staphylococcus aureus subsp. aureus Mu3] gi|160368646|gb|ABX29617.1| elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728895|gb|EES97624.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TCH130] gi|257271428|gb|EEV03574.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275236|gb|EEV06723.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278236|gb|EEV08878.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 68-397] gi|257281812|gb|EEV11949.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus E1410] gi|257283985|gb|EEV14108.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M876] gi|257787657|gb|EEV25997.1| transcription elongation factor greA [Staphylococcus aureus A9781] gi|257840166|gb|EEV64630.1| transcription elongation factor GreA [Staphylococcus aureus A9763] gi|257843893|gb|EEV68287.1| transcription elongation factor greA [Staphylococcus aureus A9719] gi|257845657|gb|EEV69689.1| transcription elongation factor greA [Staphylococcus aureus A9635] gi|257848228|gb|EEV72219.1| transcription elongation factor greA [Staphylococcus aureus A9299] gi|257851053|gb|EEV74996.1| transcription elongation factor greA [Staphylococcus aureus A8115] gi|257854429|gb|EEV77378.1| transcription elongation factor greA [Staphylococcus aureus A6300] gi|257858046|gb|EEV80935.1| transcription elongation factor greA [Staphylococcus aureus A6224] gi|257861721|gb|EEV84520.1| transcription elongation factor greA [Staphylococcus aureus A5948] gi|257864318|gb|EEV87068.1| transcription elongation factor greA [Staphylococcus aureus A5937] gi|259160902|gb|EEW45922.1| transcription elongation factor [Staphylococcus aureus 930918-3] gi|259163252|gb|EEW47811.1| transcription elongation factor [Staphylococcus aureus D30] gi|262075526|gb|ACY11499.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ED98] gi|269941096|emb|CBI49482.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TW20] gi|282313545|gb|EFB43940.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C101] gi|282317195|gb|EFB47569.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C427] gi|282319366|gb|EFB49718.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus D139] gi|282321596|gb|EFB51921.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M899] gi|282324942|gb|EFB55252.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327193|gb|EFB57488.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331309|gb|EFB60823.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590051|gb|EFB95133.1| transcription elongation factor greA [Staphylococcus aureus A10102] gi|282594505|gb|EFB99490.1| transcription elongation factor greA [Staphylococcus aureus A9765] gi|282595809|gb|EFC00773.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus C160] gi|282764431|gb|EFC04557.1| transcription elongation factor greA [Staphylococcus aureus A8117] gi|283460831|gb|EFC07921.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus H19] gi|283470887|emb|CAQ50098.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus aureus subsp. aureus ST398] gi|283790520|gb|EFC29337.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817292|gb|ADC37779.1| Transcription elongation factor GreA [Staphylococcus aureus 04-02981] gi|290920315|gb|EFD97381.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M1015] gi|291095156|gb|EFE25421.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 58-424] gi|291466871|gb|EFF09391.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M809] gi|294824665|gb|EFG41088.1| transcription elongation factor greA [Staphylococcus aureus A9754] gi|294968479|gb|EFG44503.1| transcription elongation factor greA [Staphylococcus aureus A8819] gi|295128545|gb|EFG58179.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887687|gb|EFH26585.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177337|gb|EFH36589.1| transcription elongation factor greA [Staphylococcus aureus A8796] gi|297575732|gb|EFH94448.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MN8] gi|298694890|gb|ADI98112.1| transcription elongation factor [Staphylococcus aureus subsp. aureus ED133] gi|300885998|gb|EFK81200.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH70] gi|302333284|gb|ADL23477.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JKD6159] gi|302751439|gb|ADL65616.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340669|gb|EFM06602.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437922|gb|ADQ76993.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH60] gi|312829997|emb|CBX34839.1| transcription elongation factor greA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315195510|gb|EFU25897.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS00] gi|315198693|gb|EFU29021.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS01] gi|320140503|gb|EFW32357.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144042|gb|EFW35811.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439043|gb|EGA96775.1| transcription elongation factor GreA [Staphylococcus aureus O11] gi|323442814|gb|EGB00439.1| transcription elongation factor GreA [Staphylococcus aureus O46] gi|329314285|gb|AEB88698.1| Transcription elongation factor greA [Staphylococcus aureus subsp. aureus T0131] gi|329727213|gb|EGG63669.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21172] gi|329728459|gb|EGG64896.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21189] gi|329733259|gb|EGG69596.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21193] Length = 158 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP Sbjct: 68 IEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+ + Sbjct: 127 MAKALIGKGLDDEVRVPLPNGGEMNVKIVNI 157 >gi|226324188|ref|ZP_03799706.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758] gi|225207737|gb|EEG90091.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ Sbjct: 5 KTLLTYTGLKKLEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE I+ AEV+ + D I G TV + +K ++ +Q+VG EA+ G +S Sbjct: 65 EELEKILKNAEVVVEDDVDLDTINIGCTVDVYDKEFEEEIVFQLVGSTEANSLEGKISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIGK++GD+++V G YE+L++ Sbjct: 125 SPVGKALIGKKVGDVVAVETQAGVIEYEVLKI 156 >gi|332881700|ref|ZP_08449348.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680339|gb|EGJ53288.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 92/151 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +L Sbjct: 4 MSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +PI Sbjct: 64 KAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMAYTIVSETEANLKEGKISVQTPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G EI + + Sbjct: 124 AQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154 >gi|315223125|ref|ZP_07864993.1| transcription elongation factor GreA [Streptococcus anginosus F0211] gi|315187814|gb|EFU21561.1| transcription elongation factor GreA [Streptococcus anginosus F0211] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 83/129 (64%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G Sbjct: 88 AIGKTVTIQEVGETDEEVYMIVGAAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147 Query: 147 EKTYEILQV 155 +IL+V Sbjct: 148 SYDVKILKV 156 >gi|238758699|ref|ZP_04619873.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236] gi|238702996|gb|EEP95539.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236] Length = 165 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWQALDSELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE +++ +++VG E D +SI SP+ Sbjct: 67 TKRLEVLKIVDPDPRQEGKVFFGAWVR-VENELEEQRTFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK++ D ++V P GE TY IL + Sbjct: 126 ARALIGKQVDDEVTVQTPNGEVTYWILAI 154 >gi|302385514|ref|YP_003821336.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] gi|302196142|gb|ADL03713.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MVDK + T +G K + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MVDKKNILTYEGLKKYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ ALIG+++GD++ V G Y++L++ Sbjct: 121 ISNESPVGHALIGRKVGDVVDVETQSGVIQYKVLEI 156 >gi|281425411|ref|ZP_06256324.1| transcription elongation factor GreA [Prevotella oris F0302] gi|299141561|ref|ZP_07034697.1| transcription elongation factor GreA [Prevotella oris C735] gi|281400404|gb|EFB31235.1| transcription elongation factor GreA [Prevotella oris F0302] gi|298576897|gb|EFI48767.1| transcription elongation factor GreA [Prevotella oris C735] Length = 156 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 86/140 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+D + EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++ Sbjct: 4 MSQEGYDNLVAELQRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A+++D+S +S D + + V + + K Y IV + EA+++ G +SI +PI Sbjct: 64 KVSIAEAKIVDLSRLSTDAVQIMSKVEMTNMGTKAKMVYTIVSESEANLKQGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ + G+I+ V P G Sbjct: 124 AQGLLNHKEGEIVEVKIPRG 143 >gi|262278089|ref|ZP_06055874.1| transcription elongation factor and transcript cleavage [Acinetobacter calcoaceticus RUH2202] gi|262258440|gb|EEY77173.1| transcription elongation factor and transcript cleavage [Acinetobacter calcoaceticus RUH2202] Length = 164 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + ++ID S ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIIDYSPEQAGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+GKE+ D I V+ P G+K + I Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151 >gi|254362550|ref|ZP_04978651.1| transcription elongation factor [Mannheimia haemolytica PHL213] gi|261493833|ref|ZP_05990347.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495058|ref|ZP_05991525.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094151|gb|EDN75047.1| transcription elongation factor [Mannheimia haemolytica PHL213] gi|261309300|gb|EEY10536.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310536|gb|EEY11725.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 160 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEAKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGK++ D I V P G+ Sbjct: 126 ARALIGKQVDDEIRVETPLGK 146 >gi|163846801|ref|YP_001634845.1| transcription elongation factor GreA [Chloroflexus aurantiacus J-10-fl] gi|222524620|ref|YP_002569091.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl] gi|229485761|sp|A9WK05|GREA_CHLAA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799554|sp|B9LBX1|GREA_CHLSY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|163668090|gb|ABY34456.1| transcription elongation factor GreA [Chloroflexus aurantiacus J-10-fl] gi|222448499|gb|ACM52765.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl] Length = 157 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 93/149 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + ER +I + I+ A+ GD+SE+ EY+ AK+ Q L EGR+ EL Sbjct: 8 LTREGRARLEAELEYLTTVERKQIAERIAAAKELGDISESGEYEDAKKAQALLEGRIREL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++++RAEVID S + G++V++ ++ G ++ + IVG EA+ + G +S SP+ Sbjct: 68 KHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGRISNESPL 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK + ++V+ P G IL+V Sbjct: 128 GAALLGKRARNKVTVHTPSGVMKLTILKV 156 >gi|300718779|ref|YP_003743582.1| transcription elongation factor [Erwinia billingiae Eb661] gi|299064615|emb|CAX61735.1| Transcription elongation factor [Erwinia billingiae Eb661] Length = 159 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKQELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++ S ++ FGA V +E ++GD K ++I G E ++ +SI SP+ Sbjct: 66 TKCLEQLRIVEYSPQQDGKVFFGAWVE-IENDAGDVKRFRIAGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V P G+ + ++ + ++ Sbjct: 125 ARALLKKEVGDLAVVPTPVGDAHWYVVAIDYV 156 >gi|219849234|ref|YP_002463667.1| transcription elongation factor GreA [Chloroflexus aggregans DSM 9485] gi|254799553|sp|B8G358|GREA_CHLAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219543493|gb|ACL25231.1| transcription elongation factor GreA [Chloroflexus aggregans DSM 9485] Length = 157 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 93/149 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL ER +I + I+ A+ GD+SE+ EY+ AK+ Q L EGR+ EL Sbjct: 8 LTREGRARLEAELEHLMTVERKQIAERIAAAKELGDISESGEYEDAKKAQALLEGRIREL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++++RAE+ID S + G++V++ ++ G ++ + IVG EA+ + G +S SPI Sbjct: 68 KHLLSRAEIIDEDQASTGEVRIGSSVTVRFEDDGSEETWTIVGSAEANPRQGRISNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK + + ++V+ P G IL+V Sbjct: 128 GAALLGKRVRNKVTVHTPSGVMKLTILKV 156 >gi|253732265|ref|ZP_04866430.1| transcription elongation factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724054|gb|EES92783.1| transcription elongation factor [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 158 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP Sbjct: 68 IEHMLRNALIIE-DTGDNNIVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+ + Sbjct: 127 MAKALIGKGLDDEVRVPLPNGGEMNVKIVNI 157 >gi|325576611|ref|ZP_08147329.1| transcription elongation factor GreB [Haemophilus parainfluenzae ATCC 33392] gi|325161174|gb|EGC73289.1| transcription elongation factor GreB [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y++VG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-EDEEGEVKQYRLVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGK++ D I V P G+ Sbjct: 126 ARALIGKDVDDEIHVETPSGK 146 >gi|296105101|ref|YP_003615247.1| transcription elongation factor GreB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059560|gb|ADF64298.1| transcription elongation factor GreB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 157 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G+ ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGNTLRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAVVQTPAGEASWYVNEITYV 156 >gi|49081530|gb|AAT50165.1| PA2859 [synthetic construct] Length = 169 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V P GEK + ++++ Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162 >gi|59710728|ref|YP_203504.1| transcription elongation factor GreB [Vibrio fischeri ES114] gi|59478829|gb|AAW84616.1| transcription elongation factor [Vibrio fischeri ES114] Length = 157 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+D S +I FGA V +E GD +++IVG E ++ +SI SP+ Sbjct: 66 RKRLDQVKVVDYSPQQDGKIFFGAFVE-IENEQGDTLSFRIVGPDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARALI KE+ + + V P G+K + Sbjct: 125 ARALIKKEVDEDVIVKTPDGDKEW 148 >gi|325662823|ref|ZP_08151392.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086546|ref|ZP_08335624.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470875|gb|EGC74104.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410379|gb|EGG89811.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 160 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G +++EL + +R + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKTILTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+E I+ AEV+ + D+I G +V + +K ++ ++IVG EA+ G Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINIGCSVLVYDKEFDEEIQFKIVGSTEANSLQGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+GK++GD I V G Y++L++ Sbjct: 121 ISNESPVGQALLGKKVGDEIQVETQAGVMEYKVLKI 156 >gi|319892663|ref|YP_004149538.1| Transcription elongation factor GreA [Staphylococcus pseudintermedius HKU10-03] gi|317162359|gb|ADV05902.1| Transcription elongation factor GreA [Staphylococcus pseudintermedius HKU10-03] gi|323464299|gb|ADX76452.1| transcription elongation factor GreA [Staphylococcus pseudintermedius ED99] Length = 158 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ A +I+ T + G TV+ VE D+++YQIVG E+D +G +S SP Sbjct: 68 IETMLRHALIIE-DTGDNHVVQIGKTVTFVELPGNDEESYQIVGSAESDAFNGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK++ D + V P GGE +I+ + Sbjct: 127 MAQALIGKQVDDEVRVPLPNGGEMNVKIVDI 157 >gi|73662460|ref|YP_301241.1| transcription elongation factor GreA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747876|sp|Q49Y48|GREA_STAS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|72494975|dbj|BAE18296.1| transcription elongation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 158 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K++ EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLEHELEELKTVKRPEVVEKIKIARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +EN++ A +I+ T + + + G TV++VE +++ YQIVG E+D G +S SP Sbjct: 68 VENMLRNALIIE-DTGNNNEVQLGKTVTIVELPGEEEEEYQIVGSAESDAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A++LIGK+L D + V P GGE +I+ + Sbjct: 127 MAKSLIGKKLDDEVRVPLPNGGEINVKIVNI 157 >gi|15598055|ref|NP_251549.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAO1] gi|107102408|ref|ZP_01366326.1| hypothetical protein PaerPA_01003470 [Pseudomonas aeruginosa PACS2] gi|116050862|ref|YP_790315.1| transcription elongation factor GreB [Pseudomonas aeruginosa UCBPP-PA14] gi|218890942|ref|YP_002439808.1| transcription elongation factor GreB [Pseudomonas aeruginosa LESB58] gi|254235846|ref|ZP_04929169.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719] gi|296388654|ref|ZP_06878129.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAb1] gi|313108005|ref|ZP_07794172.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016] gi|25453010|sp|Q9HZY5|GREB_PSEAE RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|9948947|gb|AAG06247.1|AE004712_7 transcription elongation factor GreB [Pseudomonas aeruginosa PAO1] gi|115586083|gb|ABJ12098.1| transcription elongation factor GreB [Pseudomonas aeruginosa UCBPP-PA14] gi|126167777|gb|EAZ53288.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719] gi|218771167|emb|CAW26932.1| transcription elongation factor GreB [Pseudomonas aeruginosa LESB58] gi|310880674|gb|EFQ39268.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016] Length = 168 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V P GEK + ++++ Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162 >gi|269114909|ref|YP_003302672.1| transcription elongation factor GreA [Mycoplasma hominis] gi|268322534|emb|CAX37269.1| Transcription elongation factor greA(Transcript cleavage factor greA) [Mycoplasma hominis ATCC 23114] Length = 156 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 5/150 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T + + Q++L++ Q+ RP++I+ I EAR GDLSENAEY +A++ Q E Sbjct: 6 NKIYLTEESLKQYQEKLKYLQEVARPQVIEEIKEARNQGDLSENAEYDSARDKQAAIENE 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+++I+ E+ I + S I G+TV L+ N+ + +IVG +AD + +S Sbjct: 66 ILEIQHILENVEI--IKSTSTHTIRIGSTVKLININTNEISEVKIVGALDADPFNNKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 +SP+A AL GK++G +I V AP K Y++ Sbjct: 124 TSPLAIALNGKKVGQVIEVEAP---KKYKV 150 >gi|197333913|ref|YP_002154890.1| transcription elongation factor GreB [Vibrio fischeri MJ11] gi|197315403|gb|ACH64850.1| transcription elongation factor GreB [Vibrio fischeri MJ11] Length = 155 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+D S +I FGA V +E GD +++IVG E ++ +SI SP+ Sbjct: 66 RKRLDQVKVVDYSPQQDGKIFFGAFVE-IENEQGDTLSFRIVGPDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARALI KE+ + + V P G+K + Sbjct: 125 ARALIKKEVDEDVIVKTPDGDKEW 148 >gi|158319500|ref|YP_001512007.1| transcription elongation factor GreA [Alkaliphilus oremlandii OhILAs] gi|166987608|sp|A8MLU4|GREA_ALKOO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|158139699|gb|ABW18011.1| transcription elongation factor GreA [Alkaliphilus oremlandii OhILAs] Length = 159 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D+ + +T++G K++ EL + R I + I +A A+GD+SEN+EY AK Q Sbjct: 2 MADREVVLTAQGLKKLEDELELLKTVRRKEIAERIKQAIAFGDISENSEYDEAKNEQAQV 61 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ +A +ID ++ D ++ G+ V + + + Y IVG EAD Sbjct: 62 EDRINKLETMLRKAVIIDEEDINTDIVSIGSIVQVNDLEFDEIVEYTIVGSTEADPYELK 121 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ RAL+G ++GD++ V P G YEIL++ Sbjct: 122 ISNESPVGRALLGTKVGDVVEVQIPDGVTKYEILKI 157 >gi|315644403|ref|ZP_07897543.1| transcription elongation factor GreA [Paenibacillus vortex V453] gi|315280280|gb|EFU43572.1| transcription elongation factor GreA [Paenibacillus vortex V453] Length = 158 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ ++ D I G TV + + GD Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDIIGVGNTVLVEDLEFGDTMEYTIVGSAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A+IGK+ G ++ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDI 156 >gi|197303207|ref|ZP_03168249.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC 29176] gi|197297747|gb|EDY32305.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC 29176] Length = 167 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +KI+ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKSDVEKIKAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI SPI Sbjct: 65 ERMLKTAEIVEDHS-KADEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIESPI 123 Query: 127 ARALIGKELGD--IISVNAPGG 146 +AL+G + GD I VN G Sbjct: 124 GKALLGHKEGDRVYIKVNDDFG 145 >gi|182420076|ref|ZP_02951310.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237669518|ref|ZP_04529498.1| transcription elongation factor GreA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376113|gb|EDT73700.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237654962|gb|EEP52522.1| transcription elongation factor GreA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 161 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ L Sbjct: 10 MTYEGVKKLENELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGRIVTL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S SP+ Sbjct: 70 ENMLKNAVVVDESEIPKDVVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++G+I+ V P G +EIL + Sbjct: 130 GSALIGKKIGEIVEVQIPDGVNKFEILGI 158 >gi|160878872|ref|YP_001557840.1| GreA/GreB family elongation factor [Clostridium phytofermentans ISDg] gi|160427538|gb|ABX41101.1| GreA/GreB family elongation factor [Clostridium phytofermentans ISDg] Length = 167 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T DK+Q+E+ +R+ R I A+ EARA+GDLSEN EY AAK+ +N NEGR+ L Sbjct: 5 LTKNDIDKMQEEIEYRKLTVRKEAIDAVKEARAHGDLSENFEYYAAKKDKNKNEGRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI+ + S D I TVS+ + + + Y+++ + GL+SI SP+ Sbjct: 65 ERMIKTAEVIEDHS-SEDEIGINNTVSIYFEEDNEIEKYKLITTVRENSLQGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++G ++ D + V Y I++ + Sbjct: 124 GKAILGHKVEDRVYVKVRDDYGYYVIIKAI 153 >gi|304405775|ref|ZP_07387433.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] gi|304345018|gb|EFM10854.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] Length = 158 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MGDKEVILTQDGLRKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + + ++ G+TVS+ + GD +Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTETVSIGSTVSVEDLEFGDTVDYTIVGTAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK++G + V+ P G Y+IL++ Sbjct: 121 ISNESPVGKAILGKKVGATVEVSVPAGVIQYKILEI 156 >gi|255994119|ref|ZP_05427254.1| transcription elongation factor GreA [Eubacterium saphenum ATCC 49989] gi|255993787|gb|EEU03876.1| transcription elongation factor GreA [Eubacterium saphenum ATCC 49989] Length = 158 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + + +T KG ++ Q+E R + I EA AYGDLSEN+EY AAK Q E Sbjct: 1 MSETVFLTQKGLEEKQKEYDELVGVRRKEVADRIKEATAYGDLSENSEYDAAKNEQAELE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE+++ E+ID + GD + G V L ++ Y+IVG EAD + L+ Sbjct: 61 ERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 S SPI + L+ ++G+ +S++ P G+ Y+IL++ Sbjct: 121 SNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKI 156 >gi|251796519|ref|YP_003011250.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] gi|247544145|gb|ACT01164.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] Length = 158 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T +G K++ EL + +R + + A +YGDL EN+EY +AK+ Q E R Sbjct: 4 NEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFMETR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE ++ A V + + ++ GA V L + +K Y++VG EADV +S Sbjct: 64 ITQLEKMLKTARVSN--SKDTTKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENKISY 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK +GD ISV+AP G YE+L++ Sbjct: 122 ESPMGQALMGKSVGDTISVDAPIGVIKYELLEI 154 >gi|110835318|ref|YP_694177.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2] gi|110648429|emb|CAL17905.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2] Length = 171 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 3/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G+ K+ EL++ +++RP I +++ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITVEGYHKLNDELQYLWKQKRPEITQSVQEAAAQGDRSENAEYIYGKKQLREIDR-RVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D R+ FGA V L E ++GD + Y++VG E D G +SI +P Sbjct: 74 LSKRLDDMTVVDRVPEDQSRVFFGAWVEL-ENDTGDTETYRLVGPDETDAGRGYISIDAP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K++ D + V P GE+ I ++ + Sbjct: 133 LARALLKKQVDDEVEVRTPAGERCLFINRIWY 164 >gi|326793978|ref|YP_004311798.1| transcription elongation factor GreB [Marinomonas mediterranea MMB-1] gi|326544742|gb|ADZ89962.1| transcription elongation factor GreB [Marinomonas mediterranea MMB-1] Length = 181 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 3/147 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G DK+ EL++ +E+RP + + +S+A GD SENAEY K+L+ ++ R+ Sbjct: 29 LTKEGADKLLAELKYLWKEKRPAVTQTVSDAAKQGDRSENAEYIYGKKQLREIDR-RVRY 87 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D + RI FGA V+L E G + ++IVG E D S +SI SP Sbjct: 88 LEKRLDHCTVVDRAPNDVSRIFFGAWVTL-EHEDGKLETFRIVGPDELDHHSDYISIDSP 146 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +A+AL+ KE GD +++ GEK Y I Sbjct: 147 VAKALLKKEEGDEVTIRRAEGEKLYYI 173 >gi|126701179|ref|YP_001090076.1| transcription elongation factor GreA [Clostridium difficile 630] gi|254977179|ref|ZP_05273651.1| transcription elongation factor [Clostridium difficile QCD-66c26] gi|255094509|ref|ZP_05323987.1| transcription elongation factor [Clostridium difficile CIP 107932] gi|255102765|ref|ZP_05331742.1| transcription elongation factor [Clostridium difficile QCD-63q42] gi|255308586|ref|ZP_05352757.1| transcription elongation factor [Clostridium difficile ATCC 43255] gi|255316260|ref|ZP_05357843.1| transcription elongation factor [Clostridium difficile QCD-76w55] gi|255518921|ref|ZP_05386597.1| transcription elongation factor [Clostridium difficile QCD-97b34] gi|255652100|ref|ZP_05399002.1| transcription elongation factor [Clostridium difficile QCD-37x79] gi|255657503|ref|ZP_05402912.1| transcription elongation factor [Clostridium difficile QCD-23m63] gi|260685073|ref|YP_003216358.1| transcription elongation factor GreA [Clostridium difficile CD196] gi|260688731|ref|YP_003219865.1| transcription elongation factor GreA [Clostridium difficile R20291] gi|296452825|ref|ZP_06894512.1| transcription elongation factor GreA [Clostridium difficile NAP08] gi|296879923|ref|ZP_06903895.1| transcription elongation factor GreA [Clostridium difficile NAP07] gi|306521834|ref|ZP_07408181.1| transcription elongation factor GreA [Clostridium difficile QCD-32g58] gi|123066490|sp|Q181F4|GREA_CLOD6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|115252616|emb|CAJ70459.1| Transcription elongation factor greA (Transcript cleavage factor GreA) [Clostridium difficile] gi|260211236|emb|CBA66757.1| transcription elongation factor grea [Clostridium difficile CD196] gi|260214748|emb|CBE07439.1| transcription elongation factor grea [Clostridium difficile R20291] gi|296258373|gb|EFH05281.1| transcription elongation factor GreA [Clostridium difficile NAP08] gi|296429037|gb|EFH14912.1| transcription elongation factor GreA [Clostridium difficile NAP07] Length = 159 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 90/149 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+++EL + +R + + I A ++GDLSENAEY AK+ Q E R+ +L Sbjct: 9 LTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEERILKL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ +A +ID S + + + G+ V + + ++ Y IVG EAD G +S SP+ Sbjct: 69 ENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G+ +++ V P G +EIL++ Sbjct: 129 GKALLGRAAKEVVEVQVPDGVAKFEILEI 157 >gi|310641883|ref|YP_003946641.1| transcription elongation factor [Paenibacillus polymyxa SC2] gi|309246833|gb|ADO56400.1| Transcription elongation factor [Paenibacillus polymyxa SC2] Length = 159 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 80/130 (61%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R + + + A +YGDL EN+EY +AK+ Q E R+ LE ++T+A ++D S + Sbjct: 27 KRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETRIMVLEKMLTKARIVDESNLDLKT 86 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G+TV L + +K Y++V EADV +S SP+ +AL+GKE+G II V+AP Sbjct: 87 VSIGSTVILNDIEFSEKVEYKVVSPAEADVLDNKISYESPLGKALLGKEVGSIIHVDAPM 146 Query: 146 GEKTYEILQV 155 YE+L++ Sbjct: 147 AVIKYELLEI 156 >gi|297588655|ref|ZP_06947298.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516] gi|297574028|gb|EFH92749.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516] Length = 159 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 1/147 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ LEN++ A+VI D + G+TV+ S + Y+IVG E+D +G Sbjct: 61 EERINYLENLLLYAKVIQDDENQKDVVTVGSTVTYKNLKSNKEMTYKIVGTAESDPFAGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +S SP +AL+ ++GD +V PGG Sbjct: 121 ISNESPTGKALLNLKVGDTTTVETPGG 147 >gi|205354873|ref|YP_002228674.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274654|emb|CAR39708.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630019|gb|EGE36362.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ F A V +E + GD ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFSAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150 >gi|300725195|ref|YP_003714523.1| transcription elongation factor and transcript cleavage [Xenorhabdus nematophila ATCC 19061] gi|297631740|emb|CBJ92459.1| transcription elongation factor and transcript cleavage [Xenorhabdus nematophila ATCC 19061] Length = 165 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ + ERP + +A+SEA A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWHTLDQELKYLWKIERPNVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE G++ +++VG E D +SI SP+ Sbjct: 67 SKRLDILQIVDPDPRQEGKVFFGAWVK-VENEQGEEHIFRLVGPDEFDPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK++ D ++V P G TY I Q+ Sbjct: 126 ARALLGKQVDDEVTVMTPNGMATYWIRQI 154 >gi|117922445|ref|YP_871637.1| transcription elongation factor GreB [Shewanella sp. ANA-3] gi|117614777|gb|ABK50231.1| transcription elongation factor GreB [Shewanella sp. ANA-3] Length = 167 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S +I FGA L E +G+ Y+IVG E D + G ++I SP+ Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGECVRYRIVGKDELDTKLGYITIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK++ D + V P G K + I Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYI 150 >gi|239626631|ref|ZP_04669662.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516777|gb|EEQ56643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 160 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ RALIGK +GD + V G+ Y++L++ Sbjct: 121 ISNESPVGRALIGKVVGDCVEVETQAGDIQYKVLEI 156 >gi|261403947|ref|YP_003240188.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|329925508|ref|ZP_08280382.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] gi|261280410|gb|ACX62381.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|328939791|gb|EGG36131.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] Length = 158 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ ++ D + G TV + + GD Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A+IGK+ G ++ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDI 156 >gi|325261221|ref|ZP_08127959.1| transcription elongation factor GreA [Clostridium sp. D5] gi|324032675|gb|EGB93952.1| transcription elongation factor GreA [Clostridium sp. D5] Length = 161 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 87/149 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYAGLKSLEDELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+I+ AEV+ + D+I G V + + ++ +++IVG EA+ G +S SP+ Sbjct: 69 ESILKNAEVVVEDEVDFDKINVGCKVKVFDITYDEEMDFKIVGSTEANSLEGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G++ GD++ V G+ Y++L++ Sbjct: 129 GQALMGRKTGDLVEVETQAGQIQYKVLEI 157 >gi|313633191|gb|EFS00071.1| transcription elongation factor GreA [Listeria seeligeri FSL N1-067] Length = 133 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 78/129 (60%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +EN A++ID + + Sbjct: 2 RKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENXXRNAQIIDAAESHNGLV 61 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 G TV+ VE G+++ Y IVG EAD G +S SPIA+ L+G + G+ +++ P G Sbjct: 62 TLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPAG 121 Query: 147 EKTYEILQV 155 + +I ++ Sbjct: 122 DMNVKIEKI 130 >gi|293609918|ref|ZP_06692220.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828370|gb|EFF86733.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 164 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D S ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYSPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+GKE+ D I V+ P G+K + I Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151 >gi|146294891|ref|YP_001185315.1| transcription elongation factor GreB [Shewanella putrefaciens CN-32] gi|145566581|gb|ABP77516.1| transcription elongation factor GreB [Shewanella putrefaciens CN-32] Length = 160 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFDK+ EL + +E RP I K ++ A + GD SENA+Y+ K L + R+ L Sbjct: 6 ITREGFDKLNAELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I ++++ S ++ FGA V +E ++G+ K+++IVG E ++ +SI +P+ Sbjct: 66 RKRIEAVKIVEYSPQQDGKVFFGAWVQ-IENDAGEIKSFRIVGPDEIYGRNDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+ D + V+ P GE T+ + Sbjct: 125 ARALLKKEVDDEVVVSTPLGEHTWYV 150 >gi|331091969|ref|ZP_08340801.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402868|gb|EGG82435.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G K+++EL + +R + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKTILTYAGLKKLEEELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE I+ AEV+ + D+I+ G TV++ + ++ ++IVG EA+ G Sbjct: 61 EARIEELEKILKNAEVVVEDEVDLDKISIGCTVTVYDNEFEEEIEFKIVGSTEANSLEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +ALIG+++ D++ V G Y++L++ Sbjct: 121 ISNESPVGKALIGRKVDDVVEVETQAGVMEYKVLKI 156 >gi|104774331|ref|YP_619311.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423412|emb|CAI98285.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325126126|gb|ADY85456.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 162 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 91/147 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ + Sbjct: 8 MTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERINAI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++D + + D ++ G TV++ E + + Y+IVG ++D G VS SPI Sbjct: 68 SEQLKYAVIVDTAAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G + G+ + +N +Y+++ Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154 >gi|166030714|ref|ZP_02233543.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC 27755] gi|166029506|gb|EDR48263.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC 27755] Length = 160 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 8 LTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G TV + ++ +++VG EA+ G +S SP+ Sbjct: 68 EAILKNAEVVVEDEVDFDKINVGCTVKAYDITFDEEIEFKLVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK +GD++ V G Y++L + Sbjct: 128 GHALIGKTIGDVVEVETQAGVMQYKVLDI 156 >gi|82702992|ref|YP_412558.1| transcription elongation factor GreB [Nitrosospira multiformis ATCC 25196] gi|82411057|gb|ABB75166.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 213 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 3/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ E W ERP++ +S A A GD SENA+Y K+ + R+ L Sbjct: 34 ITPEGHKRLMDEFLWLMNRERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRIRFL 93 Query: 67 ENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + AE+ID S D RI FGATV+ + + G++K IVG E D G +S S Sbjct: 94 TRRLDMAEIIDPSMPREDESRIFFGATVTYINE-KGEEKIVSIVGVNEIDTTRGYISWVS 152 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+AR L+ GD+++++APGG + EIL+V + Sbjct: 153 PLARTLLKAREGDVVTLHAPGGTEELEILEVRY 185 >gi|229846659|ref|ZP_04466767.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] gi|229810752|gb|EEP46470.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] gi|309972280|gb|ADO95481.1| Transcription elongation factor GreB [Haemophilus influenzae R2846] Length = 162 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++++ QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWNELDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|320160999|ref|YP_004174223.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] gi|319994852|dbj|BAJ63623.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] Length = 155 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G ++Q+EL + + R + K + A GDLSENA+Y AKE Q EGR+ EL Sbjct: 7 LTADGLRRLQEELEYLKGPAREELSKRLRFAIQQGDLSENADYIQAKEEQGFLEGRILEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ +I+ + D + GA V++ E+ + + YQ+VG +EAD + +S SPI Sbjct: 67 TQILNNYVLIEENNNHKDVVNLGAKVTIQEEGF-EPETYQVVGPKEADPKKNRISHESPI 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG+ +G++++ P G+ T++IL + Sbjct: 126 GKALIGRGVGEVVTAETPTGKITFKILSI 154 >gi|251811021|ref|ZP_04825494.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060] gi|293366432|ref|ZP_06613110.1| transcription elongation factor GreA [Staphylococcus epidermidis M23864:W2(grey)] gi|251805439|gb|EES58096.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060] gi|291319466|gb|EFE59834.1| transcription elongation factor GreA [Staphylococcus epidermidis M23864:W2(grey)] Length = 161 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 11 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP Sbjct: 71 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 129 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+++ Sbjct: 130 MAKALIGKGLNDQVRVPLPNGGEMNVKIVEI 160 >gi|323494580|ref|ZP_08099684.1| transcription elongation factor [Vibrio brasiliensis LMG 20546] gi|323311183|gb|EGA64343.1| transcription elongation factor [Vibrio brasiliensis LMG 20546] Length = 159 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDRLKRELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D S ++ FGA V +E +G+ K+++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEAGEIKSFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ KE+ D SV P G K + + Q+ Sbjct: 124 PMARALLKKEVDDEFSVKTPDGYKEWFVNQI 154 >gi|27468211|ref|NP_764848.1| transcription elongation factor [Staphylococcus epidermidis ATCC 12228] gi|57867085|ref|YP_188750.1| transcription elongation factor GreA [Staphylococcus epidermidis RP62A] gi|282875965|ref|ZP_06284832.1| transcription elongation factor GreA [Staphylococcus epidermidis SK135] gi|32129576|sp|Q8CSB3|GREA_STAES RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71152091|sp|Q5HNU0|GREA_STAEQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27315757|gb|AAO04892.1|AE016748_126 transcription elongation factor [Staphylococcus epidermidis ATCC 12228] gi|57637743|gb|AAW54531.1| transcription elongation factor GreA [Staphylococcus epidermidis RP62A] gi|281294990|gb|EFA87517.1| transcription elongation factor GreA [Staphylococcus epidermidis SK135] gi|329724691|gb|EGG61197.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU144] gi|329735364|gb|EGG71656.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU045] gi|329737227|gb|EGG73481.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU028] Length = 158 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+++ Sbjct: 127 MAKALIGKGLNDQVRVPLPNGGEMNVKIVEI 157 >gi|163814034|ref|ZP_02205426.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759] gi|158450483|gb|EDP27478.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759] Length = 165 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 91/144 (63%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +KI+QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTQKDIEKIEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A++I+ ++ S D + TV++ ++ +++ Y++V AD+ GLVS SPI Sbjct: 65 DRLVRTADIIEDNS-SDDEVGIDNTVTVYFEDDDEEETYRVVTSVRADILEGLVSNVSPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 +A++G ++GD + V G+ + Sbjct: 124 GKAILGHKVGDRVQVVPERGDPYF 147 >gi|227499306|ref|ZP_03929418.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098] gi|227218657|gb|EEI83891.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098] Length = 157 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 91/143 (63%), Gaps = 2/143 (1%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKIARSFGDLSENADYDEAKNEQGEIESRIAKVEDMIR 73 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+ I++ S D + G TV++ ++ ++ +Y+IVG E++ G +S SP+ ALI Sbjct: 74 NAKTIEVKENS-DEVGVGNTVTVYDEEFDEEFDYKIVGTAESNPLEGFISNESPVGAALI 132 Query: 132 GKELGDIISVNAPGGEKTYEILQ 154 GK++ + + V+ P G K Y +++ Sbjct: 133 GKKVNERVEVSTPNG-KMYFVIK 154 >gi|284043142|ref|YP_003393482.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] gi|283947363|gb|ADB50107.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] Length = 161 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 83/148 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T G K++ EL E+R + I EAR +GD+SENAEY AK Q + E Sbjct: 1 MPKDVILTPDGLAKLKSELEHLSTEKRREVAARIKEAREFGDISENAEYDDAKNEQAMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE + A VID ++ D + G++V + + SG Y IVG EA+ + Sbjct: 61 SKIAQLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148 S SP+ +ALIG++ G+ +V P G++ Sbjct: 121 SNESPVGKALIGRKAGETATVQLPNGKQ 148 >gi|328952713|ref|YP_004370047.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM 11109] gi|328453037|gb|AEB08866.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM 11109] Length = 159 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 94/154 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G+ K+ +EL+ ++ RPRI++ + EA A G L +N +Y A+ Q + Sbjct: 1 MPKVILTQEGYRKLLRELKHLRRIVRPRILEDVMEAAADGRLEKNDQYWEARSRQVQVDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ L+ II ++EV+ S ++ ++ F V + + + + +V EADV+ G +S Sbjct: 61 QIHHLQEIIAQSEVLVGSNLTASQVRFNCRVKICNVITQEISIFHLVSSIEADVRQGHLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SP+ +AL+GK++G+ I N PGG + Y++L++ Sbjct: 121 IESPLGQALLGKKVGERIGFNPPGGPRWYQVLEI 154 >gi|295093556|emb|CBK82647.1| transcription elongation factor GreA [Coprococcus sp. ART55/1] Length = 161 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 83/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 8 VTYSGLKKIEEELQNLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ EV+D + + G V + + +K Y IVG +AD+ + +S SP+ Sbjct: 68 EAMLKNIEVVDEDEVDTGVVGIGCKVVVYDYEFDEKIEYDIVGSSQADIMNNKISDESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL G ++G+ + V AP GE Y +L + Sbjct: 128 GMALKGAKVGEEVLVEAPDGEFKYRVLDI 156 >gi|291550053|emb|CBL26315.1| transcription elongation factor GreA [Ruminococcus torques L2-14] Length = 167 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +KIQ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDVEKIQAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI SPI Sbjct: 65 ERMLKTAEIVEDHSKE-DEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIESPI 123 Query: 127 ARALIGKELGD--IISVNAPGG 146 +AL+G + G+ I VN G Sbjct: 124 GKALLGHKEGERVYIKVNDDFG 145 >gi|210618382|ref|ZP_03291947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787] gi|210148938|gb|EEA79947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787] Length = 144 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 82/140 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++EL + R + I EAR GDLSENAEY AAK+ Q E R+ Sbjct: 5 KTLLTYAGLKALEEELENLKVVRRKEVAVKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G +S Sbjct: 65 EEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGKISNE 124 Query: 124 SPIARALIGKELGDIISVNA 143 SP+ +ALIGK++GD + V A Sbjct: 125 SPLGKALIGKKVGDKVEVEA 144 >gi|299769038|ref|YP_003731064.1| transcription elongation factor GreB [Acinetobacter sp. DR1] gi|298699126|gb|ADI89691.1| transcription elongation factor GreB [Acinetobacter sp. DR1] Length = 164 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + ++ID + ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIIDYAPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+GKE+ D I V+ P G+K + I Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151 >gi|253576833|ref|ZP_04854158.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon 786 str. D14] gi|251843700|gb|EES71723.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon 786 str. D14] Length = 158 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G ++++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKRLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSIVTVEDLEFGDTMEYAIVGTAESDPMQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK+ G I+ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKKGAIVDVNVPAGVIQYKIVDI 156 >gi|89076063|ref|ZP_01162423.1| transcription elongation factor GreB [Photobacterium sp. SKA34] gi|89048215|gb|EAR53797.1| transcription elongation factor GreB [Photobacterium sp. SKA34] Length = 160 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 VTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +VID S +I FGA V +E +G+ K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLDVLKVIDYSPQQDGKIFFGAWVE-IENEAGETKTFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+ D I V P G+K + I ++ Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFINEI 153 >gi|70726310|ref|YP_253224.1| transcription elongation factor GreA [Staphylococcus haemolyticus JCSC1435] gi|123762316|sp|Q4L6V7|GREA_STAHJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|68447034|dbj|BAE04618.1| transcription elongation factor [Staphylococcus haemolyticus JCSC1435] Length = 158 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++++++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEQLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ T + + G TV+ +E ++++YQIVG EAD +G +S SP Sbjct: 68 IEHMLRYALIIE-DTGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFNGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+ + Sbjct: 127 MAKALIGKSLKDEVRVPLPNGGEINVKIVNI 157 >gi|257791983|ref|YP_003182589.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243] gi|317489992|ref|ZP_07948484.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA] gi|325829881|ref|ZP_08163339.1| transcription elongation factor GreA [Eggerthella sp. HGA1] gi|257475880|gb|ACV56200.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243] gi|316910990|gb|EFV32607.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA] gi|325488048|gb|EGC90485.1| transcription elongation factor GreA [Eggerthella sp. HGA1] Length = 156 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 4/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R+AE+ Sbjct: 8 LTQEGKDKLEEELHFLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEARIAEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I++ A V++ S + + G+TV++ G ++ + IVG E+D +G +S SP+ Sbjct: 68 SRILSEATVVNTPKRS-NSVHIGSTVTV--DMGGRERVFTIVGGAESDAAAGKISNESPV 124 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 L+G + GD++ P G K T IL++ Sbjct: 125 GSVLLGHKKGDVVETTGPTGRKITMTILKL 154 >gi|145631751|ref|ZP_01787512.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|144982612|gb|EDJ90158.1| transcription elongation factor GreB [Haemophilus influenzae R3021] Length = 158 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFSPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|303236653|ref|ZP_07323234.1| transcription elongation factor GreA [Prevotella disiens FB035-09AN] gi|302483157|gb|EFL46171.1| transcription elongation factor GreA [Prevotella disiens FB035-09AN] Length = 156 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 89/141 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+D + EL+ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+ E+ Sbjct: 4 MSQEGYDNLVAELQHLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQAHLETRINEM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I +A+++D+S +S + + +TV + + K Y IV + EA+++ G +SI +PI Sbjct: 64 KMTIAQAKIVDMSRLSNEAVQIMSTVEMTNLGNNSKMKYTIVSESEANLKLGKISIKTPI 123 Query: 127 ARALIGKELGDIISVNAPGGE 147 A+ L+ K++GD + + P G+ Sbjct: 124 AQGLLNKKVGDEVEIEIPRGK 144 >gi|325479434|gb|EGC82530.1| transcription elongation factor GreA [Anaerococcus prevotii ACS-065-V-Col13] Length = 157 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 90/143 (62%), Gaps = 2/143 (1%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIR 73 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+ I+++ S D + G TV++ ++ + Y+IVG E++ G +S SP+ ALI Sbjct: 74 NAKTIEVNENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISNESPVGAALI 132 Query: 132 GKELGDIISVNAPGGEKTYEILQ 154 GK++ + + V+ P G K Y +++ Sbjct: 133 GKKVNERVEVSTPNG-KMYFVIK 154 >gi|291547775|emb|CBL20883.1| transcription elongation factor GreA [Ruminococcus sp. SR1/5] Length = 161 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 82/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 9 LTYAGLRKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + DRI+ G V + + + +IVG EA+ G +S SP+ Sbjct: 69 EKILKNAEVVVEDEVDLDRISVGCKVKVHDYEFEEDMELKIVGSTEANSLEGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG DI+ V P G Y++L++ Sbjct: 129 GKALIGAHTNDIVEVEMPSGIMKYKVLEI 157 >gi|154504438|ref|ZP_02041176.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149] gi|153795213|gb|EDN77633.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149] Length = 167 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T KIQQE+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ Sbjct: 4 KLTQSDVKKIQQEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRIRY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A +++ + D + TV + ++ + + Y+IV +GL+SI SP Sbjct: 64 LERMLKTAVIVEDHS-GADEVGLNNTVQVYCEDDDELETYRIVTSVRGSSLNGLISIESP 122 Query: 126 IARALIGKELGD--IISVNAPGG 146 I +AL+G ++GD + VN G Sbjct: 123 IGKALLGHKVGDRVFVKVNDEFG 145 >gi|255657691|ref|ZP_05403100.1| transcription elongation factor GreA [Mitsuokella multacida DSM 20544] gi|260849878|gb|EEX69885.1| transcription elongation factor GreA [Mitsuokella multacida DSM 20544] Length = 156 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 3/156 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G++K+ ++L + + +R I + + A A GDLSEN+EY AK Q Sbjct: 1 MADKQVMLTEEGYNKLVEKLNYLKSVKRIEIAQRLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + +L I + +I +GD + G+ V++ + GD++ + +VG EAD G Sbjct: 61 EGEIQDLTAKIRNSHII--KAGAGDVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+G++ G +I V+AP G YEIL + Sbjct: 119 ISNESPLGQALLGQKSGSVIDVHAPAGIIKYEILDI 154 >gi|258513604|ref|YP_003189826.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans DSM 771] gi|257777309|gb|ACV61203.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans DSM 771] Length = 158 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 84/150 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++EL + R I I +A +GD+SEN+EY+ AK Q EGR+ L Sbjct: 8 LTVAGLKNLEEELEQLKSVRRREIAARIKQAIEFGDISENSEYEDAKNEQAFIEGRILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A++ID + + + G+ V L + GD+ Y IVG EAD + +S SP+ Sbjct: 68 EKMLRNAKIIDDENIDIEAVHIGSKVLLKDLEFGDEFEYTIVGSVEADPGASKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++GK G ++ VN P G YEI+ ++ Sbjct: 128 GKAILGKPKGSVVEVNVPAGILKYEIMDII 157 >gi|88861075|ref|ZP_01135710.1| transcription elongation factor GreB [Pseudoalteromonas tunicata D2] gi|88817003|gb|EAR26823.1| transcription elongation factor GreB [Pseudoalteromonas tunicata D2] Length = 160 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE + +E+RP + K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITFEGYNKLKQEHDYLWKEQRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125 I+ +++ S ++ FGA V +E + GD KN +IVG +E S +S+ SP Sbjct: 66 RKIMPDLKIVYYSPEQEGKVFFGAWVE-IENDDGDIKNLRIVGPEEIYGDSKNYISVDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALI KE+ D + V P GEKT+ I ++ ++ Sbjct: 125 MARALIKKEVDDEVIVKTPEGEKTWYINKITYV 157 >gi|228475181|ref|ZP_04059907.1| transcription elongation factor GreA [Staphylococcus hominis SK119] gi|314936274|ref|ZP_07843621.1| transcription elongation factor GreA [Staphylococcus hominis subsp. hominis C80] gi|228270792|gb|EEK12194.1| transcription elongation factor GreA [Staphylococcus hominis SK119] gi|313654893|gb|EFS18638.1| transcription elongation factor GreA [Staphylococcus hominis subsp. hominis C80] Length = 158 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ + I G TV+ VE ++++YQIVG EAD G +S SP Sbjct: 68 IEHMLRYALIIE-DNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALIGK L D + V P GGE +I+ + Sbjct: 127 MAKALIGKNLNDEVRVPLPNGGEMKVKIVDI 157 >gi|26553820|ref|NP_757754.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2] gi|26453827|dbj|BAC44158.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2] Length = 161 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++EL++ RP IIK I EAR GDLSENA+Y AAK Q E R+ E+ Sbjct: 8 MTESGKKELEKELKYLIDVRRPEIIKQIQEAREQGDLSENADYDAAKNFQAQIESRIKEI 67 Query: 67 ENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +NI+ ++I SG ++ GATV++ + + G+ Y+IVG E+D +S Sbjct: 68 QNILNNTKIIKEEKSSGSNEKKVHVGATVTIKDYSDGESHTYKIVGPIESDPSQNKISNE 127 Query: 124 SPIARALIGKELGD 137 P+A+ ++GK++G+ Sbjct: 128 CPLAKCIMGKKVGE 141 >gi|153813031|ref|ZP_01965699.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174] gi|149830833|gb|EDM85923.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174] Length = 160 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 82/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYAGLKKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G V + + + +IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEDEVDLDKINVGCKVKVHDYEFDEDMELKIVGSTEANSLEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG GD++ V P G Y++L++ Sbjct: 128 GKALIGAHTGDVVDVEMPMGIMKYKVLEI 156 >gi|114565687|ref|YP_752841.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319142|sp|Q0B0N4|GREA_SYNWW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114336622|gb|ABI67470.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 159 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 91/151 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G +K++ EL + +R + + I +A A+GD++EN+EY+ AK Q EGR+ Sbjct: 7 VVLTKEGLEKLENELEHLKSVKREEVAERIKQAIAFGDITENSEYEDAKNEQAFIEGRII 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + +A +++ + D ++ G+ ++L E SG + +V E+ ++ G +S S Sbjct: 67 SLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDGKISDES 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +A++GK++ +SV AP G Y+I++V Sbjct: 127 PVGKAIMGKKVKSTVSVEAPAGTIKYKIIKV 157 >gi|301155419|emb|CBW14885.1| transcription elongation factor [Haemophilus parainfluenzae T3T1] Length = 158 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ K Y++VG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-EDEEGEVKQYRLVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 ARALIGK + D I V P G+ Sbjct: 126 ARALIGKGVDDEIHVETPSGK 146 >gi|223044081|ref|ZP_03614120.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus capitis SK14] gi|314933776|ref|ZP_07841141.1| transcription elongation factor GreA [Staphylococcus caprae C87] gi|222442475|gb|EEE48581.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus capitis SK14] gi|313653926|gb|EFS17683.1| transcription elongation factor GreA [Staphylococcus caprae C87] Length = 158 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ VE ++++YQIVG EAD G +S SP Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A ALIGK L D + V P GGE +I+ + Sbjct: 127 MANALIGKGLNDEVRVPLPNGGEMNVKIVDI 157 >gi|290969240|ref|ZP_06560765.1| transcription elongation factor GreA [Megasphaera genomosp. type_1 str. 28L] gi|290780746|gb|EFD93349.1| transcription elongation factor GreA [Megasphaera genomosp. type_1 str. 28L] Length = 161 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + R + K I EA A GDLSEN+EY AK Q EGR+AEL Sbjct: 7 ITQEGLQKLKDELNELKSVRRITVSKRIQEAIALGDLSENSEYDDAKNEQAFIEGRIAEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I A++I + S ++ G+ V L + +G++ +Y +VG EAD + +S SP+ Sbjct: 67 EGKIRTAKIIQAADDSAAKVRLGSHVVLEDVETGERFDYTVVGTAEADPFNNKISNESPV 126 Query: 127 ARALIGKELGD----IISVNAPGGEKTYEIL 153 +A++G+ + +++V AP GE Y IL Sbjct: 127 GKAILGQLISQQEPVVVTVKAPAGELQYRIL 157 >gi|195940962|ref|ZP_03086344.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4024] Length = 157 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGQTLRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 121 DSPMARALLKKEVGDLAVVQTPAGEASWYVNEIEYV 156 >gi|301299802|ref|ZP_07206044.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852615|gb|EFK80257.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 157 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+ Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI +A++ K++G +V AP G T +I+ + Sbjct: 125 PIGKAIMHKKVGHTATVVAPAGSYTVKIISI 155 >gi|325288417|ref|YP_004264598.1| transcription elongation factor GreA [Syntrophobotulus glycolicus DSM 8271] gi|324963818|gb|ADY54597.1| transcription elongation factor GreA [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL + R + + I +A +GD+SEN+EY AK Q EGR+ L Sbjct: 8 LTLDGLKKLEDELENLKTHRRKEVAERIKQAIEFGDISENSEYDDAKNEQAFIEGRIITL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ A VID D ++ G+TV L + G+ + Y IVG EAD +S SP+ Sbjct: 68 EKILRNARVID-DNEERDFVSLGSTVLLKDIEFGETEEYTIVGSAEADPAGNKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++G+ G ++ VN P G YEI+ + Sbjct: 127 GKAVLGQAKGSVVEVNVPAGILRYEIMDI 155 >gi|260582727|ref|ZP_05850514.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|260094177|gb|EEW78078.1| transcription elongation factor GreB [Haemophilus influenzae NT127] Length = 162 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFSPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|299144545|ref|ZP_07037624.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517633|gb|EFI41373.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 158 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K I T++G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q Sbjct: 1 MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ A+VI + ++ D + G+TV + + + G+++ + IVG EAD G Sbjct: 61 EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ LIG ++G++ V P G YE++ + Sbjct: 121 ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGI 156 >gi|311696372|gb|ADP99245.1| transcription elongation factor GreB [marine bacterium HP15] Length = 171 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 88/144 (61%), Gaps = 3/144 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITPEGERALRDELQYLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDR-RVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D D++ FGA V+ VE GD++ Y++VG E D+ G +SI+SP Sbjct: 74 LGKRLEELTVVDRLPDDRDKVFFGAWVT-VEDEEGDEQTYRLVGADEFDLNKGYLSINSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKT 149 +ARALIGK L D +SV P G K+ Sbjct: 133 LARALIGKRLDDEVSVRTPEGWKS 156 >gi|145640545|ref|ZP_01796129.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|145642261|ref|ZP_01797826.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|145273017|gb|EDK12898.1| transcription elongation factor GreB [Haemophilus influenzae 22.4-21] gi|145275131|gb|EDK14993.1| transcription elongation factor GreB [Haemophilus influenzae 22.4-21] Length = 162 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY +K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYSKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|116514426|ref|YP_813332.1| transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093741|gb|ABJ58894.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 162 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 90/147 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ + Sbjct: 8 MTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERINAI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++D + D ++ G TV++ E + + Y+IVG ++D G VS SPI Sbjct: 68 SEQLKYAVIVDTVAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G + G+ + +N +Y+++ Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154 >gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] Length = 178 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++++EL + R I + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 28 MTYEGLQELEKELEHLKVNRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 87 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV + G+T +L++ ++ Y++VG EA+ G +S SP+ Sbjct: 88 EKILKNAEVFLEEDAEKGTVNLGSTFTLLDMEYDEEIVYKLVGATEANSLEGKISNESPV 147 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL G + GDI+ V P G Y+++++ Sbjct: 148 GRALKGAKEGDIVEVETPAGTLQYKVIKI 176 >gi|269217202|ref|ZP_06161056.1| transcription elongation factor GreA [Slackia exigua ATCC 700122] gi|269129339|gb|EEZ60424.1| transcription elongation factor GreA [Slackia exigua ATCC 700122] Length = 161 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 90/146 (61%), Gaps = 3/146 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++I +T +G K+++EL + + E+R + + I AR +GD+SEN+EY AK Q L E Sbjct: 7 MANEIVLTPEGKQKLEEELHFLETEKRAEVGERIRVAREFGDISENSEYDDAKNEQGLME 66 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++ +I++ A +++ S +R+ G+TV++ G ++ + IVG EADV SG + Sbjct: 67 ARIAQINDILSNAVLVEAPKRS-NRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S SP+ AL+G + GD + P G Sbjct: 124 SNESPVGAALLGGKKGDHFTAEGPTG 149 >gi|89892964|ref|YP_516451.1| hypothetical protein DSY0218 [Desulfitobacterium hafniense Y51] gi|219666231|ref|YP_002456666.1| transcription elongation factor GreA [Desulfitobacterium hafniense DCB-2] gi|89332412|dbj|BAE82007.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536491|gb|ACL18230.1| transcription elongation factor GreA [Desulfitobacterium hafniense DCB-2] Length = 156 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + +R + + I +A +GD+SEN+EY AK Q EGR+ L Sbjct: 8 LTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDISENSEYDDAKNEQAFIEGRIITL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A VID + +A G TV L +K G+++ Y IVG EAD S +S SP+ Sbjct: 68 EKMLRNARVID-DLEGSEVVALGTTVILKDKEFGEEEEYTIVGSAEADPGSNKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++G+ G ++ +N P G YEI+ + Sbjct: 127 GKAVLGQPKGTVVEINVPAGILYYEIVDI 155 >gi|284046269|ref|YP_003396609.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] gi|283950490|gb|ADB53234.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] Length = 154 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +G D ++ EL + R I I AR +GDL ENAEY AAKE Q E Sbjct: 1 MTDGYAITQEGLDALRAELEQLETVARREIAARIRTAREWGDLKENAEYHAAKEDQAHLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L A V + S+ D +AFG+TV + + G Y +VG EA + G + Sbjct: 61 TRILKLRERERNATVTEASS-DVDIVAFGSTVEV--ETGGKNARYTLVGAAEASARDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SP+ARALIG G+ + V P G + +++V Sbjct: 118 SIESPVARALIGARAGEDVQVQTPSGARILRVVRV 152 >gi|160915319|ref|ZP_02077532.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991] gi|158433118|gb|EDP11407.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991] Length = 159 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 13/156 (8%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I + EARA GDLSENA+Y AA+E Q E R Sbjct: 5 EKFLVTKEGLDELVKEHDHLIHVVRDEVIIELQEARAQGDLSENADYDAAREHQAQVEAR 64 Query: 63 MAELENIITRAEVIDISTMSGDR------IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 + +LE +I +AE+I+ GD+ + G+TV++++ +S +++ Y IVG EAD Sbjct: 65 IRDLEAMIAKAEIIE-----GDKKTKKKAVTLGSTVTILDMDSNEEETYTIVGSIEADPL 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +G +S +P+A AL+ + DI+ V+ G E YE+ Sbjct: 120 NGKLSNITPLAVALMDHKTNDIVEVS--GAETPYEV 153 >gi|315286030|gb|EFU45468.1| transcription elongation factor GreB [Escherichia coli MS 110-3] gi|324014609|gb|EGB83828.1| transcription elongation factor GreB [Escherichia coli MS 60-1] Length = 154 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 2/142 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V +E + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAP 144 SP+ARAL+ KE+GD+ VN P Sbjct: 133 DSPMARALLKKEVGDLAVVNTP 154 >gi|90581398|ref|ZP_01237193.1| transcription elongation factor GreB [Vibrio angustum S14] gi|90437375|gb|EAS62571.1| transcription elongation factor GreB [Vibrio angustum S14] Length = 160 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 VTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +VID S ++ FGA V +E +G+ K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLDVLKVIDYSPQQDGKVFFGAWVE-IENEAGETKTFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+ D I V P G+K + I ++ Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFINEI 153 >gi|90961105|ref|YP_535021.1| transcription elongation factor GreA [Lactobacillus salivarius UCC118] gi|90820299|gb|ABD98938.1| Transcription elongation factor [Lactobacillus salivarius UCC118] Length = 157 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+ Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI +A++ K++G +V AP G T +I+ + Sbjct: 125 PIGKAIMHKKVGHTATVIAPAGSYTVKIISI 155 >gi|283795848|ref|ZP_06345001.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|291076479|gb|EFE13843.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|295091062|emb|CBK77169.1| transcription elongation factor GreA [Clostridium cf. saccharolyticum K10] Length = 160 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYTGLKQYEDELQDLKVNKRQEIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ AEV+ + ++I G V L++ ++ ++IVG EA+ Sbjct: 61 EARIEQLEKLLKNAEVVVEEEIDLEKINIGCRVKLLDVEEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ AL+GK++GD++ V G Y++L++ Sbjct: 121 ISNESPVGHALLGKKVGDVVDVETQAGMIQYKVLEI 156 >gi|325123157|gb|ADY82680.1| transcription elongation factor GreB [Acinetobacter calcoaceticus PHEA-2] Length = 164 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ISRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D S ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYSPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+GKE+ D I V+ P G+K + I ++ Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYINKI 154 >gi|16272512|ref|NP_438726.1| transcription elongation factor GreB [Haemophilus influenzae Rd KW20] gi|260581015|ref|ZP_05848838.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] gi|1170017|sp|P43882|GREB_HAEIN RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd KW20] gi|260092374|gb|EEW76314.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] Length = 158 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|225028128|ref|ZP_03717320.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353] gi|224954598|gb|EEG35807.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353] Length = 165 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + DK++ E+ R+ E RP +++ + EARA+GDLSEN EY AAK+ +N NE R+ Sbjct: 2 KHKLTQQDVDKMKAEIEHRKVEVRPELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE +I E+++ + + D++ TV+L + + + V D VSI Sbjct: 62 RYLERMIRTCEIVEDHS-NADQVGLNKTVTLYFEEDDETDKFSFVTTVLVDTMQNRVSIE 120 Query: 124 SPIARALIGKELGD--IISVNAPGG 146 SP+ +AL+G + G+ I VNA G Sbjct: 121 SPLGKALLGHKKGERVYIPVNAQYG 145 >gi|325685811|gb|EGD27883.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 162 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 90/147 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ + Sbjct: 8 MTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERIDAV 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++D + D ++ G TV++ E + + Y+IVG ++D G VS SPI Sbjct: 68 SEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G + G+ + +N +Y+++ Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154 >gi|167768162|ref|ZP_02440215.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1] gi|317499617|ref|ZP_07957879.1| transcription elongation factor GreA [Lachnospiraceae bacterium 5_1_63FAA] gi|167709686|gb|EDS20265.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1] gi|291560188|emb|CBL38988.1| transcription elongation factor GreA [butyrate-producing bacterium SSC/2] gi|316893092|gb|EFV15312.1| transcription elongation factor GreA [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ + R I + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 9 LTPDGLKALEDELQELKVVRRKEIAQKIKEAREQGDLSENAEYDAAKDEQRDMEARIEEI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ A VID G I+ G V L + G + Y IVG EAD+ +S +PI Sbjct: 69 EKILKNAVVIDEKFEKG-VISLGCHVLLEDITLGKEVTYHIVGSTEADILQNKISNEAPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GK++GD++SV + ++ V Sbjct: 128 GRALLGKKIGDVVSVEGINQVNDFRVIDV 156 >gi|148263835|ref|YP_001230541.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4] gi|146397335|gb|ABQ25968.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4] Length = 170 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 9/155 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G ++ EL + + ERPR+ +A+S+A A GD SENAEY K L+ ++ Sbjct: 15 ITPEGAKCLRDELDYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDR----R 70 Query: 66 LENIITRAEVIDISTMSGDR---IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +I R + + + +R I FGA V L E GD+ Y+IVG E DV G +S+ Sbjct: 71 VRFLIKRLDALTVVNNQPERQGKIFFGAWVRL-ETEDGDEVVYRIVGPDEFDVAKGFISM 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ RAL+GK+ GD + V P G T+ +L + + Sbjct: 130 DSPVGRALLGKQEGDEVVVRRPAGATTFTVLDISY 164 >gi|323497027|ref|ZP_08102050.1| transcription elongation factor [Vibrio sinaloensis DSM 21326] gi|323317871|gb|EGA70859.1| transcription elongation factor [Vibrio sinaloensis DSM 21326] Length = 160 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 89/146 (60%), Gaps = 4/146 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D + ++ FGA V +E +G+ K+++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYAPQQEGKVFFGAWVE-IENEAGEVKSFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150 P+ARAL+ KE+ D SV P G K + Sbjct: 124 PMARALLKKEVDDEFSVKTPEGYKEW 149 >gi|210611522|ref|ZP_03288942.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787] gi|210151969|gb|EEA82976.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787] Length = 194 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K D ++ E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 32 LTQKDIDAMKAEIEYRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI Sbjct: 92 ERMIKTAEVISDES-KDDEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150 Query: 127 ARALIGKELGDI--ISVNAPGG 146 +AL+G ++GD I +NA G Sbjct: 151 GKALLGHKVGDKVWIPINANAG 172 >gi|145638522|ref|ZP_01794131.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|145272117|gb|EDK12025.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|309750026|gb|ADO80010.1| Transcription elongation factor GreB [Haemophilus influenzae R2866] Length = 162 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPPKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V+ P G Sbjct: 126 ARALIGKTLDDEVRVDTPSG 145 >gi|331700830|ref|YP_004397789.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] gi|329128173|gb|AEB72726.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] Length = 155 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 5/139 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+++I+ E+R + RP IK++++ARA GDLSENAEY AAK +L++L E R+ Sbjct: 8 ITKFGYEQIESEIR-ELENSRPAKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+V S + D + G TV + + Y+IVG E D+ G +SI+SP Sbjct: 66 LRKQLQYAQVYTPS--NNDTVEVGKTVKFEFLDDHSTETYEIVGTPEVDIDHGKISIASP 123 Query: 126 IARALIGKELGDIISVNAP 144 I AL+ GDI++V+AP Sbjct: 124 IGSALLNHHSGDIVTVSAP 142 >gi|149917972|ref|ZP_01906466.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1] gi|149821238|gb|EDM80642.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1] Length = 164 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ K++ EL + ERPR+ ++ A A GD SENAEYQ K + R+ L Sbjct: 8 ITPFGYAKLKAELEELWKVERPRVTDEVAAAAALGDRSENAEYQYGKRRLREIDRRVRWL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ + G ++ FGA V+ VE +G++K +Q+VG E DV+ G +S++SP Sbjct: 68 NKRLKELTVVRGAPADG-KVHFGAWVT-VEDEAGEQKRWQLVGSDEFDVKDGKISVNSPF 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+G+E+GD + V P G+ IL + Sbjct: 126 GRALLGREVGDDVEVQRPKGDLELVILAI 154 >gi|312898247|ref|ZP_07757638.1| transcription elongation factor GreA [Megasphaera micronuciformis F0359] gi|310620744|gb|EFQ04313.1| transcription elongation factor GreA [Megasphaera micronuciformis F0359] Length = 161 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T+ G +K+++EL + R + + I EA A GDLSEN+EY AK Q E Sbjct: 1 MSNETLITADGLEKLKEELNELKSVRRIAVSQRIKEAIALGDLSENSEYDDAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELEN I A++I+ ST ++ G+ V L + + ++ Y +VG EAD + + Sbjct: 61 GRIVELENKIRTAKIIEESTDDVAKVRLGSKVILEDVETKERFEYTVVGTAEADPFNNRI 120 Query: 121 SISSPIARALIG----KELGDIISVNAPGGEKTYEIL 153 S SP+ A++G KE I+SV AP GE Y+IL Sbjct: 121 SNESPVGAAILGQNVDKENPVIVSVKAPAGEVQYKIL 157 >gi|229845698|ref|ZP_04465821.1| transcription elongation factor GreB [Haemophilus influenzae 6P18H1] gi|229811384|gb|EEP47090.1| transcription elongation factor GreB [Haemophilus influenzae 6P18H1] Length = 162 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|145633475|ref|ZP_01789204.1| transcription elongation factor GreB [Haemophilus influenzae 3655] gi|144985844|gb|EDJ92452.1| transcription elongation factor GreB [Haemophilus influenzae 3655] Length = 168 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|116328972|ref|YP_798692.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121716|gb|ABJ79759.1| greA transcription elongation factor-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 927 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 5/160 (3%) Query: 1 MVDKIP-----VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55 ++++IP VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Sbjct: 758 ILNRIPEGAILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMER 817 Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 Q + + LE I A ++D++ + D+I G T L +++G+ Y I+G +AD Sbjct: 818 QVQLQAAIKRLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADT 877 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + ++S SP+A++L+GK++GD +N G E Y +L++ Sbjct: 878 EKHIISYQSPLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917 >gi|116330420|ref|YP_800138.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124109|gb|ABJ75380.1| greA transcription elongation factor-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 927 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 5/160 (3%) Query: 1 MVDKIP-----VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55 ++++IP VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Sbjct: 758 ILNRIPEGAILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMER 817 Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 Q + + LE I A ++D++ + D+I G T L +++G+ Y I+G +AD Sbjct: 818 QVQLQAAIKRLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADT 877 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + ++S SP+A++L+GK++GD +N G E Y +L++ Sbjct: 878 EKHIISYQSPLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917 >gi|86159099|ref|YP_465884.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85775610|gb|ABC82447.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 163 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +GF ++ E E+RPRI+ + A A GD SENAEY K+L+ L+ R+ Sbjct: 8 ITPEGFRRLAAEHTRIWTEQRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ R FGA V+ VE+ G ++ Y++VG E DV +GL+S+ +P Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQERRYRLVGPDEFDVSAGLISVDAP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK GD++ V+ P G + +++V W Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVEFTVVEVSW 157 >gi|145628952|ref|ZP_01784752.1| transcription elongation factor GreB [Haemophilus influenzae 22.1-21] gi|144979422|gb|EDJ89108.1| transcription elongation factor GreB [Haemophilus influenzae 22.1-21] Length = 156 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|300214037|gb|ADJ78453.1| Transcription elongation factor [Lactobacillus salivarius CECT 5713] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+ Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI +A++ K++G +V AP G T +I+ + Sbjct: 125 PIGKAIMHKKVGHTATVVAPTGSYTVKIISI 155 >gi|227892405|ref|ZP_04010210.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC 11741] gi|227865812|gb|EEJ73233.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC 11741] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 6/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+ Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI +A++ K++G ++ AP G T +I+ + Sbjct: 125 PIGKAIMHKKVGHTATIVAPAGSYTVKIISI 155 >gi|315129891|gb|EFT85881.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS03] Length = 158 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP Sbjct: 68 IEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A+ALI K L D + V P GGE +I+ + Sbjct: 127 MAKALIDKGLDDEVRVPLPNGGEMNVKIVNI 157 >gi|70731632|ref|YP_261373.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] gi|68345931|gb|AAY93537.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+D ++QEL + +E+RP I + ++ A + GD SENA+YQ K+L + R+ + Sbjct: 6 ITQDGYDALKQELDYLWREKRPDITQKVTWAASLGDRSENADYQYNKKLLREIDRRVRYI 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ + R+ FGA V VE + + K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMKVVSYAPEQEGRVFFGAWVE-VENEAAEIKRFRIVGYDEIYLRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD V+ P GE + I Q+ Sbjct: 125 ARALLKKEVGDEAVVHTPAGETCWWINQI 153 >gi|260774750|ref|ZP_05883653.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC BAA-450] gi|260609312|gb|EEX35464.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC BAA-450] Length = 158 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 6/154 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSIS 123 + + +V+D + ++ FGA V VE +G+ K ++IVG E + G +SI Sbjct: 66 RKRLEQVKVVDYAPQQEGKVFFGAWVE-VENEAGEVKKFRIVGPDE--IYGGAKDYISID 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ KE+ D SV P GEK + + + + Sbjct: 123 SPMARALLKKEVDDEFSVKTPEGEKEWFVNSICY 156 >gi|160939909|ref|ZP_02087256.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC BAA-613] gi|158437343|gb|EDP15108.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC BAA-613] Length = 160 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ RALIGK +G+ + V G+ Y++L++ Sbjct: 121 ISNESPVGRALIGKVVGECVDVETQAGDIQYKVLEI 156 >gi|300987223|ref|ZP_07178060.1| transcription elongation factor GreB [Escherichia coli MS 200-1] gi|300306258|gb|EFJ60778.1| transcription elongation factor GreB [Escherichia coli MS 200-1] Length = 170 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 18 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V +E + G ++IVG E + +SI SP+ Sbjct: 78 TKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPM 136 Query: 127 ARALIGKELGDIISVNAP 144 ARAL+ KE+GD+ VN P Sbjct: 137 ARALLKKEVGDLAVVNNP 154 >gi|156972942|ref|YP_001443849.1| transcription elongation factor [Vibrio harveyi ATCC BAA-1116] gi|156524536|gb|ABU69622.1| hypothetical protein VIBHAR_00620 [Vibrio harveyi ATCC BAA-1116] Length = 161 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D S ++ FGA V +E +GD KN++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYSPKQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D +V P G K + I Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEWFI 151 >gi|251794119|ref|YP_003008850.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] gi|247541745|gb|ACS98763.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] Length = 158 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK I +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK+ G ++ V+ P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDI 156 >gi|37524231|ref|NP_927575.1| transcription elongation factor GreB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783654|emb|CAE12506.1| Transcription elongation factor (transcript cleavage factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 8/151 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNKLKEELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +D S R+ FGA V +E + G+ K ++IVG E + +SI SP+ Sbjct: 66 TKSLEELRCVDYSPQQDGRVFFGAWVE-IENDQGEIKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE+GD V+ P G +VLW Sbjct: 125 ARALLKKEVGDSAIVHTPTG-------KVLW 148 >gi|326792442|ref|YP_004310263.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] gi|326543206|gb|ADZ85065.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] Length = 158 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 86/151 (56%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G K++ EL + R + + + EARA GDLSENAEY AAKE Q E R+ Sbjct: 6 VLLTYEGIKKLEAELENLKTTRRNDVAEKLKEARAQGDLSENAEYDAAKEEQAEIEVRIV 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE ++ A VI+ + + + G TV L + ++ +Y IVG EAD +G +S S Sbjct: 66 ELETMLKNAVVIEAEEGAVEIVKPGYTVRLYDHTFEEEVDYLIVGSTEADPVNGRISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ + +GDI+ V G YEIL + Sbjct: 126 PVGAALMNRRVGDIVEVETSEGVDKYEILGI 156 >gi|330808345|ref|YP_004352807.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376453|gb|AEA67803.1| putative Transcription factor, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ E RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARMRAEFHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +++ FGA V+ VE G + Y+IVG E D++ L+SI SP+ Sbjct: 75 TKRLEALKVVSEKPSDPNKVYFGAWVT-VEDEDGKESRYRIVGPDELDLKQNLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK L +SV P GEK I+ + + Sbjct: 134 ARALIGKALDAEVSVQTPTGEKRVYIVDIAY 164 >gi|169335600|ref|ZP_02862793.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM 17244] gi|169258338|gb|EDS72304.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM 17244] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + ++ KG+ +++++L + + +R + I AR +GDLSENAEY AK+ Q Sbjct: 1 MADKEVILSKKGYKELEEKLNYLKDVKRHEVASKIKAAREFGDLSENAEYDEAKQEQGFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + E+E + A + D + + ++ G+ V + + + ++ Y IVG +E D+ + Sbjct: 61 EGEIREIEYKLKNAVIFDDANKASGVVSLGSDVKVYDTDFDEEVVYTIVGSEEVDLDNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI AL+GK++G+I V P G +IL+V Sbjct: 121 ISNESPIGSALLGKKVGEIAKVQVPDGIVDLKILEV 156 >gi|238917593|ref|YP_002931110.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] gi|238872953|gb|ACR72663.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] Length = 158 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 84/155 (54%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T KG+D+ L + R + + + EAR GDLSENAEY AAK+ Q E Sbjct: 1 MAEKQFLTKKGYDERVARLEELKVVRRKEVAQKLKEAREQGDLSENAEYDAAKDEQRDIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AELE I+ EVI + + D + + V L + + Y IVG EAD + + Sbjct: 61 TEIAELEAILANCEVIQDNDKNKDVVKMESVVVLHDVEIDEDIEYTIVGSSEADSLNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ ALIGK+ GD + V AP GE Y ++ V Sbjct: 121 SNESPLGAALIGKKKGDTVKVEAPVGEIEYTVVSV 155 >gi|302189947|ref|ZP_07266620.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae 642] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+GD + VN P GEK + Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148 >gi|254241524|ref|ZP_04934846.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192] gi|126194902|gb|EAZ58965.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192] Length = 168 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL P++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRCPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GKEL + V P GEK + ++++ Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162 >gi|253987638|ref|YP_003038994.1| transcription elongation factor GreB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779088|emb|CAQ82248.1| transcription elongation factor greb (transcript cleavage facto greb) [Photorhabdus asymbiotica] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +D S ++ FGA V +E G+ K ++IVG E + +SI SP+ Sbjct: 66 TKSLEELRCVDYSPQQDGKVFFGAWVE-IENAQGEIKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD + V+ P GE + + ++ ++ Sbjct: 125 ARALLKKEVGDSVIVHTPTGEVMWYVNEIEYV 156 >gi|300813174|ref|ZP_07093548.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313124166|ref|YP_004034425.1| transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300495832|gb|EFK30980.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280729|gb|ADQ61448.1| Transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 162 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 90/147 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ + Sbjct: 8 MTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERIDAV 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++D + D ++ G TV++ E + + Y+IVG ++D G +S SPI Sbjct: 68 SEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKISNESPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G + G+ + +N +Y+++ Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154 >gi|66045305|ref|YP_235146.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae B728a] gi|63256012|gb|AAY37108.1| Prokaryotic transcription elongation factor GreB [Pseudomonas syringae pv. syringae B728a] gi|330899247|gb|EGH30666.1| transcription elongation factor GreB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330944671|gb|EGH46613.1| transcription elongation factor GreB [Pseudomonas syringae pv. pisi str. 1704B] gi|330973780|gb|EGH73846.1| transcription elongation factor GreB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977558|gb|EGH77502.1| transcription elongation factor GreB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+GD + VN P GEK + Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148 >gi|254428022|ref|ZP_05041729.1| transcription elongation factor GreB [Alcanivorax sp. DG881] gi|196194191|gb|EDX89150.1| transcription elongation factor GreB [Alcanivorax sp. DG881] Length = 165 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G+ K+ EL++ +E+RP + +A+ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITVEGYHKLNDELQYLWKEKRPVVTQAVQEAAAQGDRSENAEYIYGKKQLREIDR-RVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D RI FGA V L E G + Y++VG E D G +SI +P Sbjct: 74 LSKRLDDMTVVDRVPEDQSRIFFGAWVEL-ETEDGGTETYRLVGPDETDAGRGYISIDAP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K++ D ++V P GE+ I ++ + Sbjct: 133 LARALLKKQVDDEVAVRTPAGERCLFINRIWY 164 >gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC 49540] gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC 49540] Length = 172 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 88/147 (59%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+QE+ + Q +RP I + ARA GDLSEN EY AK EL++L E R+ Sbjct: 18 MTPTGYHEIEQEIE-KLQAQRPAKIAQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE+I + I G TV+L + ++ NY IVG QEAD+Q +S SP Sbjct: 76 LNKQLQYAEIIKPT--DSQTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + +AL+ +++G +SV AP + TY++ Sbjct: 134 LGQALLHQKVGQTVSVQAP--QSTYQV 158 >gi|269959400|ref|ZP_06173783.1| Transcription elongation factor greB [Vibrio harveyi 1DA3] gi|269835837|gb|EEZ89913.1| Transcription elongation factor greB [Vibrio harveyi 1DA3] Length = 161 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 88/146 (60%), Gaps = 4/146 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D S ++ FGA V +E +GD KN++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150 P+ARAL+ KE+ D +V P G K + Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEW 149 >gi|262273560|ref|ZP_06051374.1| transcription elongation factor GreB [Grimontia hollisae CIP 101886] gi|262222538|gb|EEY73849.1| transcription elongation factor GreB [Grimontia hollisae CIP 101886] Length = 161 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G++K++QEL + E RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 7 VTREGYNKLKQELDYLWNERRPEITKIVSWAASLGDRSENADYTYNKRLLREIDRRVRYL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + VID S ++ FGA V VE + GD +++IVG E + +SI SP+ Sbjct: 67 RKRLEVLRVIDYSPQQDGKVFFGAWVD-VENDDGDTLSFRIVGPDEIYGRKDYISIDSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALI KE+ D V P G K + + ++ Sbjct: 126 ARALIKKEVDDEAVVATPEGPKVWYVNRI 154 >gi|146282377|ref|YP_001172530.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501] gi|145570582|gb|ABP79688.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501] Length = 172 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 22 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 81 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L E G++ Y+IVG E D++ G++SI SP+ Sbjct: 82 TKRLEKLKVVRERPSDPNKVYFGAWVTL-EDEDGEQARYRIVGPDELDLRQGMISIDSPL 140 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK L + V P G K + ++ + Sbjct: 141 ARALVGKALDAEVQVQTPTGTKLWYVVAI 169 >gi|218506771|ref|ZP_03504649.1| transcription elongation factor GreA [Rhizobium etli Brasil 5] Length = 60 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/57 (77%), Positives = 50/57 (87%) Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 3 EEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 59 >gi|148827761|ref|YP_001292514.1| transcription elongation factor GreB [Haemophilus influenzae PittGG] gi|148719003|gb|ABR00131.1| transcription elongation factor GreB [Haemophilus influenzae PittGG] Length = 158 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|242373910|ref|ZP_04819484.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1] gi|242348464|gb|EES40066.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1] Length = 158 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A ALIGK L D + V P GGE +I+ + Sbjct: 127 MANALIGKGLNDEVRVPLPNGGEINVKIVDI 157 >gi|291563891|emb|CBL42707.1| transcription elongation factor GreA [butyrate-producing bacterium SS3/4] Length = 160 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G K + EL+ + R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKKYEDELQDLKVNRRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ ++ D+I G V + + + ++ +++VG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEVNLDKINVGCIVKVYDVDFDEEMEFKLVGSTEANSLENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ ALIGK +GD++ V G Y++L + Sbjct: 121 ISNESPVGHALIGKRVGDVVDVETQSGVIQYKVLDI 156 >gi|242242884|ref|ZP_04797329.1| elongation factor GreA [Staphylococcus epidermidis W23144] gi|242233659|gb|EES35971.1| elongation factor GreA [Staphylococcus epidermidis W23144] Length = 161 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 11 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP Sbjct: 71 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 129 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A ALIGK L D + V P GGE +I+++ Sbjct: 130 MAIALIGKGLNDQVRVPLPNGGEMNVKIVEI 160 >gi|319795595|ref|YP_004157235.1| transcription elongation factor greb [Variovorax paradoxus EPS] gi|315598058|gb|ADU39124.1| transcription elongation factor GreB [Variovorax paradoxus EPS] Length = 192 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ L Sbjct: 33 ITPEGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D+I FGATV V++ D++ I+G EAD VS SP Sbjct: 93 TKRLEIAEVTDPSVHHGSDQIFFGATVRYVDETGDDERTITILGIDEADSAQSQVSWISP 152 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ GD++ + PGG EIL V + Sbjct: 153 IARALLKSREGDVVKLVTPGGAHEVEILSVSY 184 >gi|261250558|ref|ZP_05943133.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891] gi|260939127|gb|EEX95114.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891] Length = 158 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 4/146 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D++++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDRLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +V+D S ++ FGA V +E GD K ++IVG E D + G +SI S Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEDGDTKAFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150 P+ARAL+ KE+ D SV P G K + Sbjct: 124 PMARALLKKEVDDEFSVKTPEGFKEW 149 >gi|163815694|ref|ZP_02207066.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759] gi|158448999|gb|EDP25994.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759] Length = 161 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 8 VTYSGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ EV+D + + G V + + ++ Y IVG +AD+ + +S SP+ Sbjct: 68 EAMLKNIEVVDEDEVDTGVVGIGCKVIVYDYEYDEEIEYDIVGSSQADIMNNKISDESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL G ++G+ + V AP GE Y +L + Sbjct: 128 GMALKGAKVGEEVLVEAPDGEFKYRVLDI 156 >gi|237797206|ref|ZP_04585667.1| transcription elongation factor GreB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020056|gb|EGI00113.1| transcription elongation factor GreB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 157 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVLYSPEQEGRVFFGAWVE-IENEEGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|293364014|ref|ZP_06610750.1| putative transcription elongation factor GreA [Mycoplasma alligatoris A21JP2] gi|292552504|gb|EFF41278.1| putative transcription elongation factor GreA [Mycoplasma alligatoris A21JP2] Length = 160 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 2/142 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K + E ERP + A+ EARA GDLSENAEY AA++ Q EGR Sbjct: 8 EKIYLAKETLEKYKNEYDHLVNVERPSVQAALKEARAQGDLSENAEYDAARDRQGTIEGR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE I+ RAE+I +T+ G +I G+T++ + +K I+G +A+ +S Sbjct: 68 ISELEAILDRAEIIS-TTLDG-KIGIGSTITYFSELDKEKHKVTIMGSHDANPFENKISN 125 Query: 123 SSPIARALIGKELGDIISVNAP 144 SP+A A++ + GD I V+AP Sbjct: 126 ESPLAVAMLDAKKGDKIEVDAP 147 >gi|257066134|ref|YP_003152390.1| transcription elongation factor GreA [Anaerococcus prevotii DSM 20548] gi|256798014|gb|ACV28669.1| transcription elongation factor GreA [Anaerococcus prevotii DSM 20548] Length = 157 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 2/143 (1%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIR 73 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+ I++ S D + G TV++ ++ + Y+IVG E++ G +S SP+ ALI Sbjct: 74 NAKTIEVIENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISNESPVGAALI 132 Query: 132 GKELGDIISVNAPGGEKTYEILQ 154 GK++ + + V+ P G K Y +++ Sbjct: 133 GKKVDERVEVSTPNG-KMYFVIK 154 >gi|227498561|ref|ZP_03928705.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21] gi|226904017|gb|EEH89935.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21] Length = 173 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 93/151 (61%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q EGR+ L Sbjct: 8 LTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVEGRILTL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 E +I A+VI S ++ ++ G+ V++ + + +++ Y +VG EAD + IS S Sbjct: 68 EKMIRNAKVIKDSEINKKVVSLGSQVTIKDMETEEEEEYTVVGTTEADPMADPPRISNES 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +A++G+++G + V P GE +Y+I+ + Sbjct: 128 PVGKAILGQKVGSVCKVPTPAGELSYKIVSI 158 >gi|319400941|gb|EFV89160.1| transcription elongation factor greA [Staphylococcus epidermidis FRI909] Length = 158 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E + Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155 +A ALIGK L D + V P GGE +I+++ Sbjct: 127 MAIALIGKGLNDQVRVPLPNGGEMNVKIVEI 157 >gi|145635344|ref|ZP_01791046.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] gi|145637929|ref|ZP_01793571.1| transcription elongation factor GreB [Haemophilus influenzae PittHH] gi|145267350|gb|EDK07352.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] gi|145268869|gb|EDK08830.1| transcription elongation factor GreB [Haemophilus influenzae PittHH] Length = 162 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|68249169|ref|YP_248281.1| transcription elongation factor GreB [Haemophilus influenzae 86-028NP] gi|148825152|ref|YP_001289905.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] gi|68057368|gb|AAX87621.1| transcription elongation factor GreB [Haemophilus influenzae 86-028NP] gi|148715312|gb|ABQ97522.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] Length = 158 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|330951745|gb|EGH52005.1| transcription elongation factor GreB [Pseudomonas syringae Cit 7] Length = 157 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHEALKKELDYLGREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+GD + VN P GEK + Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148 >gi|28869465|ref|NP_792084.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968119|ref|ZP_03396264.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|301383559|ref|ZP_07231977.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato Max13] gi|302058446|ref|ZP_07249987.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato K40] gi|302133441|ref|ZP_07259431.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999581|sp|Q883T5|GREB_PSESM RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|28852706|gb|AAO55779.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213927099|gb|EEB60649.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|330875597|gb|EGH09746.1| transcription elongation factor GreB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016245|gb|EGH96301.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 157 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K +++VG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRVVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|291166186|gb|EFE28232.1| transcription elongation factor GreA [Filifactor alocis ATCC 35896] Length = 161 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ KI++EL + + R + + I A ++GD+SENAEY AK Q E R+++L Sbjct: 13 ITQSGYQKIEEELEYLKATRRLEVAERIKVALSFGDISENAEYDEAKNEQAQLEERISKL 72 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ENI+ A ++D S + D + G+ V L G+ + Y IVG E+D S +S +PI Sbjct: 73 ENILRTAVIVDESKLEHDVVNIGSWVKL--DYEGEIEEYTIVGSAESDPSSSKISNEAPI 130 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G+ G+ I V P G +IL+V Sbjct: 131 GKALMGRREGESIEVQVPNGVVNIKILEV 159 >gi|289673217|ref|ZP_06494107.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae FF5] Length = 157 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHQALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+GD + VN P GEK + Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148 >gi|167622182|ref|YP_001672476.1| transcription elongation factor GreB [Shewanella halifaxensis HAW-EB4] gi|167352204|gb|ABZ74817.1| transcription elongation factor GreB [Shewanella halifaxensis HAW-EB4] Length = 159 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K+ + R+ L Sbjct: 6 VTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D S ++ FGA V +E + G+K ++IVG E + +SI SP+ Sbjct: 66 RKTLENVQVVDYSPAQEGKVFFGAWVE-IENDDGNKLQFKIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+ KE+ D + P GE+ + I ++ Sbjct: 125 ARGLLKKEVDDEAVIKTPTGEQVWYINRI 153 >gi|297538751|ref|YP_003674520.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297258098|gb|ADI29943.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 168 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G I+ E + ERP ++K +S A GD SEN +Y K + R+ L Sbjct: 13 ITPEGHAAIEAEFTELLKVERPALVKVVSWAAGNGDRSENGDYIYGKRRLRQIDSRLRFL 72 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A ++D + G +++ FGA V+L + Y+IVG E G +S SP Sbjct: 73 MQRMDLAVIVDPAAQQGLEKVFFGAWVTLFSLKDDTEHTYRIVGKDELQPSLGYISWVSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+GK++GDI+ V+ P GE+ YEI+ V Sbjct: 133 LARALLGKQIGDIVKVSVPAGEEEYEIIDV 162 >gi|266624959|ref|ZP_06117894.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] gi|288863148|gb|EFC95446.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] Length = 160 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T +G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKNILTYEGLKRYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+GK+ GD++ V G Y++L++ Sbjct: 121 ISNESPVGQALMGKKAGDVVDVETQAGVIQYKVLEI 156 >gi|210632436|ref|ZP_03297364.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279] gi|210159531|gb|EEA90502.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279] Length = 156 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 4/153 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N R+ Sbjct: 5 QIVLTAEGRKKLEEELAYLEGEKAKEIVEHIKEARAFGDLSENAEYDAAKEDQARNAARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AE+ + A+ D S ++ G+ V+LV+ G+ ++ IVG E +V +S Sbjct: 65 AEIRATLANAQ--DAVAGSNMIVSIGSNVTLVD-GEGEASDFTIVGTTETNVLEHKISNE 121 Query: 124 SPIARALIGKELGDIISVN-APGGEKTYEILQV 155 SP+ RA+IG G+ + V A G ++ Y I ++ Sbjct: 122 SPVGRAIIGHAEGESVEVVLASGKKRVYTIAKI 154 >gi|227894423|ref|ZP_04012228.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM 16047] gi|227863793|gb|EEJ71214.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM 16047] Length = 153 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ T ++ G +V L + D + Y+IVG EAD+ +G +S SP+ Sbjct: 66 GKQLKYAEIV--KTKDDGKVDLGKSVVLKFDDDDDTEQYKIVGRMEADLAAGKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G ++V AP GE I++V Sbjct: 124 GQAIMKKEAGTTVAVEAPAGEYKVTIVEV 152 >gi|197301310|ref|ZP_03166395.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC 29176] gi|197299628|gb|EDY34143.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC 29176] Length = 160 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 84/149 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S SP+ Sbjct: 69 EAILKNAEVVVEDEVDLDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLEGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++ D++ V G Y++L + Sbjct: 129 GQALMGKKVNDVVDVETQAGVIQYKVLDI 157 >gi|257464600|ref|ZP_05628971.1| transcription elongation factor GreB [Actinobacillus minor 202] gi|257450260|gb|EEV24303.1| transcription elongation factor GreB [Actinobacillus minor 202] Length = 162 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRAGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEVAQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALIGK D I+V P G+ + I Sbjct: 126 ARALIGKMQDDEITVETPVGKVMWFI 151 >gi|322514598|ref|ZP_08067631.1| transcription elongation factor GreB [Actinobacillus ureae ATCC 25976] gi|322119537|gb|EFX91624.1| transcription elongation factor GreB [Actinobacillus ureae ATCC 25976] Length = 162 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ ++ERP++ +A+SEA A D SENAEY K + R+ L Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALDDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ F A V L E G+ K Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFRAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGE 147 AR+LIGKE+ D I V+ P G+ Sbjct: 126 ARSLIGKEVDDEIKVDTPLGK 146 >gi|153833935|ref|ZP_01986602.1| transcription elongation factor GreB [Vibrio harveyi HY01] gi|148869773|gb|EDL68750.1| transcription elongation factor GreB [Vibrio harveyi HY01] Length = 161 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + + +++D S ++ FGA V +E +GD KN++IVG E D + G +SI S Sbjct: 66 RKRLEQVKMVDYSPQQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D +V P G K + I Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEWFI 151 >gi|319936519|ref|ZP_08010934.1| transcription elongation factor [Coprobacillus sp. 29_1] gi|319808411|gb|EFW04966.1| transcription elongation factor [Coprobacillus sp. 29_1] Length = 194 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K D ++ E+ R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 32 LTQKDIDAMKAEIEHRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI Sbjct: 92 ERMIKTAEVISDES-KDDEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150 Query: 127 ARALIGKELGDI--ISVNAPGG 146 +AL+G ++GD I +NA G Sbjct: 151 GKALLGHKVGDKVWIPINANAG 172 >gi|209693811|ref|YP_002261739.1| transcription elongation factor GreB [Aliivibrio salmonicida LFI1238] gi|208007762|emb|CAQ77881.1| transcription elongation factor GreB [Aliivibrio salmonicida LFI1238] Length = 155 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+Q EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFNKLQDELTFLWKEDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+D S ++ FGA V ++E GD +++IVG E + +SI SP+ Sbjct: 66 RKRLDQVKVVDYSPQQDGKVFFGAFV-VIENEQGDTLSFRIVGPDEIFGRHDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARALI KE+ + V P G+K + Sbjct: 125 ARALIKKEVDEEAIVKTPEGDKEW 148 >gi|240949386|ref|ZP_04753727.1| transcription elongation factor GreB [Actinobacillus minor NM305] gi|240296135|gb|EER46791.1| transcription elongation factor GreB [Actinobacillus minor NM305] Length = 162 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRDGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V L E G+ Y+IVG E D +SI SP+ Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEVAQYRIVGCDEFDPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK D I+V P G+ + I ++ Sbjct: 126 ARALIGKMQDDEITVETPIGKVMWFINKI 154 >gi|260770789|ref|ZP_05879718.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972] gi|260614026|gb|EEX39216.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972] gi|315178831|gb|ADT85745.1| transcription elongation factor GreB [Vibrio furnissii NCTC 11218] Length = 161 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E + E RP + K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEKLKKEHDYLWHERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E ++GD K ++IVG +E D +SI S Sbjct: 66 RKLLPELKIVDYSPQQEGKVFFGAWVE-IENSAGDVKRFRIVGPEEIYGDDVKEYISIDS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ KE+ D V P GEK + I ++ Sbjct: 125 PMARALLKKEVDDEFVVRTPSGEKEWFINRI 155 >gi|238926931|ref|ZP_04658691.1| elongation factor GreA [Selenomonas flueggei ATCC 43531] gi|238885165|gb|EEQ48803.1| elongation factor GreA [Selenomonas flueggei ATCC 43531] Length = 156 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q EG + Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELEN I +++I G + G+ V++ + +++ + IVG EAD G +S Sbjct: 65 QELENKIRNSDII--KAGDGKTVTMGSRVTVKDLEFDEEETFLIVGSTEADPDEGKISNE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+G+++G I+VNAP G Y+I+ + Sbjct: 123 SPLGEALLGQKIGRTINVNAPAGVIQYKIIDI 154 >gi|221632874|ref|YP_002522096.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] gi|221156489|gb|ACM05616.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] Length = 156 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 97/159 (61%), Gaps = 8/159 (5%) Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 MV + P+ T +G ++QEL +Q + P +++ + + GD+S+N+EY+ KE L Sbjct: 1 MVRERPIVLTPEGKAALEQELEHLRQHKLPLLLERLQQLSNEGDISDNSEYEDTKEELVL 60 Query: 59 NEGRMAELENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 E R+ E+E+I+ RA++I T +G D + G+ V+++++ G + + IV +EA+ Sbjct: 61 TEARIREIEHILRRAQMI---TRAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAA 116 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G +SI SP+ AL+GK +G ++V APGGE + I ++ Sbjct: 117 QGRISIESPVGAALLGKRVGTTVTVRAPGGEMRFTIQRI 155 >gi|197294551|ref|YP_001799092.1| transcription elongation factor GreA [Candidatus Phytoplasma australiense] gi|171853878|emb|CAM11840.1| Transcription elongation factor [Candidatus Phytoplasma australiense] Length = 156 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 1 MKNKIYELTQPGILKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++NI+ V+ +S I G VSL NSG ++ +++V E+D S Sbjct: 61 EYRITEIQNILKNVRVVKVS--KDKEINIGKKVSLKMLNSGTEEEFELVSTLESDPFSNK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148 +SI SP+ + + G E+GD++ + + G K Sbjct: 119 ISIESPLGKKIKGHEIGDVVFITSETGTK 147 >gi|327480631|gb|AEA83941.1| transcription elongation factor GreB [Pseudomonas stutzeri DSM 4166] Length = 165 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L E G + Y+IVG E D++ G++SI SP+ Sbjct: 75 TKRLEKLKVVSERPGDPNKVYFGAWVTL-EDEDGAQARYRIVGPDELDLRQGMISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK L + V P G K + ++ + Sbjct: 134 ARALVGKALDAEVQVQTPTGTKLWYVVAI 162 >gi|291520199|emb|CBK75420.1| transcription elongation factor GreA [Butyrivibrio fibrisolvens 16/4] Length = 159 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 1/147 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTAEGLRVLEDELEDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ I G TV+L++ ++ Y+IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVV-TDEHDTKNINIGWTVTLLDVEFDEEVEYKIVGSTEANSLKGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +A++G + GD ++V GE Y+IL Sbjct: 127 GKAILGHKKGDTVTVETEAGEFQYKIL 153 >gi|291533674|emb|CBL06787.1| transcription elongation factor GreA [Megamonas hypermegale ART12/1] Length = 178 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++++L + + R + + A A GDLSEN+EY AK Q Sbjct: 1 MADKRVVLTEEGLKKLEEKLEYLKSVRRLEVADRLKAAIALGDLSENSEYDDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + LE+ I +E+I + D + G TV + + + + Y IVG EAD G Sbjct: 61 EGEILTLESQIRNSEIIKADDSNKDVVHLGNTVVIKDMEYDEDETYTIVGSTEADTTEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ A++GK +G ++ V P G Y+I+++ Sbjct: 121 ISNESPVGMAILGKTVGTVVQVKVPAGTLEYKIVEI 156 >gi|227486472|ref|ZP_03916788.1| transcription elongation factor [Anaerococcus lactolyticus ATCC 51172] gi|227235653|gb|EEI85668.1| transcription elongation factor [Anaerococcus lactolyticus ATCC 51172] Length = 157 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K++ EL + + ++RP + + I AR++GDLSENA+Y AK Q E R+ ++ Sbjct: 9 LTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGEVESRIMKI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E++I A+ I++ S D + G TV L ++ + Y+IVG E++ G +S SP+ Sbjct: 69 EDMIRNAKTIEVDENS-DTVGVGNTVCLYDEEFEEDVEYKIVGTAESNPLEGYISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 A+IG ++ D + V P G K Y +++ Sbjct: 128 GEAIIGHKINDRVEVETPNG-KMYFVIK 154 >gi|332665125|ref|YP_004447913.1| transcription elongation factor GreA [Haliscomenobacter hydrossis DSM 1100] gi|332333939|gb|AEE51040.1| transcription elongation factor GreA [Haliscomenobacter hydrossis DSM 1100] Length = 156 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 92/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+++ EL + R +AI+EAR GDLSENAEY AAKE Q L E R+ +L Sbjct: 6 LTKEGFERLTGELDDMKTRGRAEAARAIAEAREKGDLSENAEYDAAKEAQGLLELRINDL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A V+D S + ++ A V+++ + K YQ+V + EAD+++ VS+SSP+ Sbjct: 66 EKQLANARVLDASEVDTSKVTVLAKVTIMNTKNKAKITYQLVSESEADLKAKKVSVSSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + L+GK +G+ +V P G+ ++I+ + Sbjct: 126 GQGLLGKTIGETATVRTPNGDMQFKIVDI 154 >gi|157963827|ref|YP_001503861.1| transcription elongation factor GreB [Shewanella pealeana ATCC 700345] gi|157848827|gb|ABV89326.1| transcription elongation factor GreB [Shewanella pealeana ATCC 700345] Length = 159 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K + R+ L Sbjct: 6 VTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D S ++ FGA V +E + G+K ++IVG E + +SI SP+ Sbjct: 66 RKTLENVQVVDYSPAQEGKVFFGAWVE-IENDDGNKLAFKIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+ KE+ D + P GE+ + I ++ Sbjct: 125 ARGLLKKEVDDEAVIKTPTGEQVWYINRI 153 >gi|319897915|ref|YP_004136112.1| transcription elongation factor [Haemophilus influenzae F3031] gi|317433421|emb|CBY81802.1| transcription elongation factor [Haemophilus influenzae F3031] Length = 158 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETNQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|261879064|ref|ZP_06005491.1| transcription elongation factor GreA [Prevotella bergensis DSM 17361] gi|270334344|gb|EFA45130.1| transcription elongation factor GreA [Prevotella bergensis DSM 17361] Length = 155 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 87/140 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L + ERP+ AI+EA GDLSEN+EY+AAKE Q E ++ E+ Sbjct: 4 MSKEGYDKLVAQLHQLEAIERPKASAAIAEAADKGDLSENSEYEAAKEAQVHLENKINEM 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I +A+++D+S +S D + + V + + K Y IV + EA+++ +SI +PI Sbjct: 64 KMTIAQAKIVDMSRLSADEVQIMSKVEMTNLATKKKMTYTIVSESEANLKENKISIHTPI 123 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ L+ K++G+ + + P G Sbjct: 124 AQGLLNKKVGEEVEIKVPRG 143 >gi|253996794|ref|YP_003048858.1| transcription elongation factor GreB [Methylotenera mobilis JLW8] gi|253983473|gb|ACT48331.1| transcription elongation factor GreB [Methylotenera mobilis JLW8] Length = 161 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+ ++ E + ERP I++ +S A + GD SEN +Y K + R L Sbjct: 10 ITPEGFEALRAEFHQLYKIERPEIVRTVSWAASNGDRSENGDYIYGKRRLRQIDSRCRHL 69 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D S +++ FGA V+L + + Y+IVG E + G +S SP Sbjct: 70 MRRMDLAEIVDASQQQHLEKVYFGAWVTLYNLDDDTEYTYRIVGKDELEPSKGYISWVSP 129 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++++GK +GD + P GE T+EI+++ Sbjct: 130 LAKSILGKSIGDTVRAATPKGEATFEIIEI 159 >gi|229815845|ref|ZP_04446169.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM 13280] gi|229808540|gb|EEP44318.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM 13280] Length = 156 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N Sbjct: 3 VSQIVLTAEGRKKLEEELAYLEGEKSREIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+ + A+ D S ++ G+ V+L++ G+ ++ IVG E +V +S Sbjct: 63 RIAEIRATLANAQ--DAVAGSSMIVSIGSVVTLID-GEGEASDFTIVGTTETNVLEHKIS 119 Query: 122 ISSPIARALIGKELGDIISVN-APGGEKTYEILQV 155 SP+ RA+IG G+ + V A G + Y I ++ Sbjct: 120 NESPVGRAIIGHGEGESVEVVLANGKTRVYTIAKI 154 >gi|327395566|dbj|BAK12988.1| transcription elongation factor GreB [Pantoea ananatis AJ13355] Length = 158 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+ Sbjct: 66 SKSIEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDVKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ K +GD V P G + + ++ ++ Sbjct: 125 ARALLKKAVGDAAVVETPAGPACWYVNEISYV 156 >gi|291520868|emb|CBK79161.1| transcription elongation factor GreA [Coprococcus catus GD/7] Length = 160 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 83/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 MTFAGLRALEDELFDLKVYKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ EV+ + D + G+ V L + ++ Y IVG EAD +G +S SP+ Sbjct: 69 EKLLKNVEVVGQDEVDADTVGIGSRVKLYDVEMDEEVEYTIVGSTEADALNGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIG ++G+ I V G+ ++IL++ Sbjct: 129 GAALIGSKVGETIVVETISGDLEFKILEI 157 >gi|309792630|ref|ZP_07687091.1| transcription elongation factor GreA [Oscillochloris trichoides DG6] gi|308225352|gb|EFO79119.1| transcription elongation factor GreA [Oscillochloris trichoides DG6] Length = 157 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G K++ EL ER + + I+ A+ GD+SE+ EY+ AK+ Q L Sbjct: 1 MTDKPTYLTRDGRAKLEAELEELTTVERKHVAERIAAAKELGDISESGEYEDAKKSQALL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ EL++I++RAE+ID S + G++V++ + +++ + IVG EA+ + G Sbjct: 61 EGRIRELKHILSRAELIDEDAHSTGEVRVGSSVTVRLEEDNEEETWTIVGSAEANPRQGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI AL+GK ++V P G IL+V Sbjct: 121 ISNESPIGAALLGKRARSKVTVQTPSGVMKLTILKV 156 >gi|78045034|ref|YP_361163.1| transcription elongation factor GreA [Carboxydothermus hydrogenoformans Z-2901] gi|77997149|gb|ABB16048.1| transcription elongation factor GreA [Carboxydothermus hydrogenoformans Z-2901] Length = 157 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G K++QEL + +R + + I +A +GD+SEN+EY+ AK Q EGR+ Sbjct: 6 VILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEYEDAKNAQAFIEGRII 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ A++I+ + D + G+ V L + G + Y +VG EAD + +S S Sbjct: 66 TLEKMLRNAKIIE-NDQQKDVVTLGSKVVLKDLEYGVVEEYYLVGSAEADPSANKISNES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ A++GK+ G ++ V P G YEI+ +L Sbjct: 125 PVGSAILGKKKGTVVEVKVPAGTLKYEIVDIL 156 >gi|330965418|gb|EGH65678.1| transcription elongation factor GreB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 157 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K +++VG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRVVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEAGDEVLVNTPEGEKLWFVNSIVY 155 >gi|77460238|ref|YP_349745.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf0-1] gi|77384241|gb|ABA75754.1| transcription elongation factor [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARMRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++V+ +++ FGA V+ +E G + Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEASKVVSEKPSDPNKVYFGAWVT-IEDEDGKQSRYRIVGPDELDLKLGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARALIGK L + V P GE+ I+ + Sbjct: 134 ARALIGKALDAEVRVQTPTGEQFVYIVAI 162 >gi|71734764|ref|YP_274255.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555317|gb|AAZ34528.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329094|gb|EFW85092.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 157 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 155 >gi|254521999|ref|ZP_05134054.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14] gi|219719590|gb|EED38115.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14] Length = 168 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+ Sbjct: 15 ITAAGHARLKAELDELWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA V L +SGD Y+IVG E D G +SI S Sbjct: 73 YLTKRLEALRVVDTTPTDPQAVFFGAWVDLENVDSGDTSRYRIVGPDETDAGLGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K L D SV PGG+ T+ ++ V Sbjct: 133 PLARALLKKRLDDEFSVELPGGQFTFAVIGV 163 >gi|126642687|ref|YP_001085671.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 17978] gi|169794997|ref|YP_001712790.1| transcription elongation factor and transcript cleavage [Acinetobacter baumannii AYE] gi|184159217|ref|YP_001847556.1| transcription elongation factor [Acinetobacter baumannii ACICU] gi|213158338|ref|YP_002320389.1| transcription elongation factor GreB [Acinetobacter baumannii AB0057] gi|215482547|ref|YP_002324737.1| transcription elongation factor GreB [Acinetobacter baumannii AB307-0294] gi|260556477|ref|ZP_05828695.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|301346025|ref|ZP_07226766.1| transcription elongation factor GreB [Acinetobacter baumannii AB056] gi|301511853|ref|ZP_07237090.1| transcription elongation factor GreB [Acinetobacter baumannii AB058] gi|301594320|ref|ZP_07239328.1| transcription elongation factor GreB [Acinetobacter baumannii AB059] gi|332855917|ref|ZP_08436091.1| transcription elongation factor GreB [Acinetobacter baumannii 6013150] gi|332867120|ref|ZP_08437399.1| transcription elongation factor GreB [Acinetobacter baumannii 6013113] gi|332876188|ref|ZP_08443967.1| transcription elongation factor GreB [Acinetobacter baumannii 6014059] gi|126388571|gb|ABO13069.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 17978] gi|169147924|emb|CAM85787.1| transcription elongation factor and transcript cleavage [Acinetobacter baumannii AYE] gi|183210811|gb|ACC58209.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|213057498|gb|ACJ42400.1| transcription elongation factor GreB [Acinetobacter baumannii AB0057] gi|213986627|gb|ACJ56926.1| transcription elongation factor GreB [Acinetobacter baumannii AB307-0294] gi|260409736|gb|EEX03036.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|322509131|gb|ADX04585.1| Transcription elongation factor GreB [Acinetobacter baumannii 1656-2] gi|323519159|gb|ADX93540.1| transcription elongation factor [Acinetobacter baumannii TCDC-AB0715] gi|332727236|gb|EGJ58685.1| transcription elongation factor GreB [Acinetobacter baumannii 6013150] gi|332734193|gb|EGJ65323.1| transcription elongation factor GreB [Acinetobacter baumannii 6013113] gi|332735622|gb|EGJ66670.1| transcription elongation factor GreB [Acinetobacter baumannii 6014059] Length = 164 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D S ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYSPEQEGKVYFGAWVD-IENEEGEQKTLRIVGVDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ KE+ D + V+ P G+K + I Sbjct: 125 MARALLSKEVDDEVEVHTPLGKKLWYI 151 >gi|118581707|ref|YP_902957.1| transcription elongation factor GreB [Pelobacter propionicus DSM 2379] gi|118504417|gb|ABL00900.1| transcription elongation factor GreB [Pelobacter propionicus DSM 2379] Length = 157 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T++G K++ E + + ERP++++ +S+A A GD SENAEY K L+ ++ + Sbjct: 5 ITAEGLKKLEAEFDYLWRVERPKVVRGVSDAAAEGDRSENAEYIYGKKRLREIDR----K 60 Query: 66 LENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L+++ +R +++ + ++ + + FG VS E G + YQ+VG E DV SG +SI Sbjct: 61 LKHLGSRLKLLKVRSLPAKPESVGFGCWVSY-EDEDGAGRCYQLVGPDEFDVSSGRISID 119 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK + D ++++ P G+ T I + Sbjct: 120 SPVGQALLGKRVDDEVTISRPNGDLTVYITAI 151 >gi|269836289|ref|YP_003318517.1| transcription elongation factor GreA [Sphaerobacter thermophilus DSM 20745] gi|269785552|gb|ACZ37695.1| transcription elongation factor GreA [Sphaerobacter thermophilus DSM 20745] Length = 157 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++IP+T +G +Q EL R I +A+ AR GDL ENA Y AAK Q EGR Sbjct: 4 ERIPITKEGLKALQDELDDLVNRRRVEIAQALQAAREEGDLRENAGYDAAKHDQAFIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + E+E+I+ RAEVID + R+ G+TV++ + G ++ Y IVG EA +G +S Sbjct: 64 IREIEDILRRAEVIDEAPNGDARVVRLGSTVTI--EIDGAQETYTIVGAVEAKPAAGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAP 144 SP RAL+G G+ + + P Sbjct: 122 NESPFGRALLGHREGEEVEIQTP 144 >gi|154495827|ref|ZP_02034523.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC 29799] gi|150275025|gb|EDN02073.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC 29799] Length = 197 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +++EL +R+ RP++++A+ EAR +GDLSEN EY+AAK+ +N NE R+ L Sbjct: 35 LTRKDLQMMREELDYRRITLRPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFL 94 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A VI + D + V++ + + + YQ+V D G +S SP+ Sbjct: 95 ENMIRTAVVIS-DQAAPDTVGLYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPV 153 Query: 127 ARALIGKELGDIISV 141 AL+GK +GD I + Sbjct: 154 GSALLGKRVGDRIYI 168 >gi|257486310|ref|ZP_05640351.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486552|ref|ZP_07004612.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159029|gb|EFI00090.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330888219|gb|EGH20880.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori str. 301020] gi|330988435|gb|EGH86538.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010600|gb|EGH90656.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 157 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE GD + VN P GEK + Sbjct: 125 ARALLKKEEGDEVLVNTPEGEKLW 148 >gi|241764061|ref|ZP_04762099.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN] gi|241366592|gb|EER61073.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN] Length = 187 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ ++++EL ERP+++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 MTAQGYARLREELLELIDTERPKMVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D++ FGATV+ +E N G ++ I+G EAD + G VS SP Sbjct: 90 TKRLEIAEVVDPSLHDGSDQVFFGATVTYLE-NGGTERTITILGIDEADSRQGQVSWMSP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD IS+ +PGG E+L V + Sbjct: 149 VARALLKSRVGDEISMGSPGGVLLLEVLNVRY 180 >gi|320324941|gb|EFW81013.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. B076] Length = 157 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEEGDEVLVNMPEGEKLWFVNSIVY 155 >gi|256420286|ref|YP_003120939.1| transcription elongation factor GreA [Chitinophaga pinensis DSM 2588] gi|256035194|gb|ACU58738.1| transcription elongation factor GreA [Chitinophaga pinensis DSM 2588] Length = 157 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 96/148 (64%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT + D++++EL + + + R I +AI+EAR GDL ENAEY AAKE Q ++E ++A L Sbjct: 7 VTKETLDQMREELSFLKTKGRAEIARAIAEAREKGDLKENAEYDAAKEAQGMHEAKVAIL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISS 124 E+ I A +++ ++ +++ V++ N +KK YQ+V ++EAD++ +S++S Sbjct: 67 ESAIATARIVEADSIDTSKVSILCKVTIT--NMANKKTVTYQLVSEKEADLKLNKISVTS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 PI + L+GK +G+I V+AP G ++I Sbjct: 125 PIGKGLLGKAVGEIADVHAPNGSLKFKI 152 >gi|45656682|ref|YP_000768.1| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828301|ref|NP_713558.2| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Lai str. 56601] gi|45599918|gb|AAS69405.1| transcriptional elongation factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386153|gb|AAN50576.2| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Lai str. 56601] Length = 926 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 84/151 (55%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + + Sbjct: 766 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMEKQVQLQAAIK 825 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S Sbjct: 826 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 885 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A++L+GK+ GD +N G E Y +L + Sbjct: 886 PLAKSLLGKKTGDSAVLNLTGAETRYTVLDI 916 >gi|315127991|ref|YP_004069994.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913] gi|315016505|gb|ADT69843.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913] Length = 156 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G DK+ +EL + ++ RP I K ++ A + GD S+NA+Y+ K L + R+ L Sbjct: 6 ITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +VID S ++ FGA V +E + G+ K ++IVG E ++ +SI SP+ Sbjct: 66 RKRIEAVKVIDYSPQQAGKVFFGAWVE-IENDDGETKAFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARA++ KE+ D V P G K + I ++ Sbjct: 125 ARAMLKKEVDDEFQVKTPVGVKEWFINKI 153 >gi|304436291|ref|ZP_07396269.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370696|gb|EFM24343.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 156 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q EG + Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELEN I +++ I G + G+ V + + +++ + IVG EAD G +S Sbjct: 65 QELENKIRNSDI--IKAGDGKTVTMGSRVMVKDLEFDEEETFLIVGSTEADPDEGKISNE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+G+++G I+VNAP G Y+I+ + Sbjct: 123 SPLGEALLGQKIGRTINVNAPAGVIQYKIIDI 154 >gi|295106038|emb|CBL03581.1| transcription elongation factor GreA [Gordonibacter pamelaeae 7-10-1-b] Length = 156 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 3/144 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R Sbjct: 4 DNFILTQEGKDKLEEELHYLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE+ I++ A V++ S ++ G+ V++ G ++ + IVG E+D +G +S Sbjct: 64 IAEISRILSEATVVNTPKRS-SKVNIGSMVTV--DMGGKERVFTIVGGAESDAAAGKISN 120 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SP+ AL+G + GD + P G Sbjct: 121 ESPVGAALLGHKKGDKVETTGPTG 144 >gi|330958996|gb|EGH59256.1| transcription elongation factor GreB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 157 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ GA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVSYSPEQEGRVFLGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|258614382|ref|ZP_05712152.1| transcription elongation factor GreA [Enterococcus faecium DO] Length = 130 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARA 129 +S SPIA+A Sbjct: 121 ISNDSPIAQA 130 >gi|297616355|ref|YP_003701514.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] gi|297144192|gb|ADI00949.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] Length = 158 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 83/151 (54%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G K++ EL + R + I +A +GD++EN+EY+ AK Q EGR+ Sbjct: 6 IILTKEGLKKLEDELEHLKSVRRKEVASRIKQAIEFGDITENSEYEDAKNEQAFVEGRIL 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + A +I+ + D ++ G+ V L++ +G + + +V E+D + +S S Sbjct: 66 CLEKTLRNARLIEDDDIHTDVVSLGSRVRLLDIATGKEITFTVVASAESDPKQSKISDES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ RA+IGK + + V P G KTY I+ + Sbjct: 126 PVGRAIIGKPINSEVEVAVPAGTKTYRIVSI 156 >gi|167629420|ref|YP_001679919.1| transcription elongation factor grea [Heliobacterium modesticaldum Ice1] gi|167592160|gb|ABZ83908.1| transcription elongation factor grea [Heliobacterium modesticaldum Ice1] Length = 160 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 88/152 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T++G K+++EL + + +R ++ + I +A YGD+SEN+EY+ AK Q EGR+ Sbjct: 5 QVMLTAEGLKKLEEELEFLKSHKRGQVAERIKQAIDYGDISENSEYEDAKNEQAFVEGRI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ A++I+ + + GA V L + + Y IVG EAD +S Sbjct: 65 ITLEKMLRNAKLIEGGEGETNVVTIGARVLLKDLEDDSEFEYTIVGSAEADPSQSKISNV 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+G+ G ++ V P G+ YEI+ + Sbjct: 125 SPVGKALLGQPKGAVVEVQVPMGKIKYEIVDI 156 >gi|163802255|ref|ZP_02196150.1| transcription elongation factor GreB [Vibrio sp. AND4] gi|159174060|gb|EDP58870.1| transcription elongation factor GreB [Vibrio sp. AND4] Length = 161 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 4/154 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D S ++ FGA V +E +GD K ++IVG +E D + G +SI S Sbjct: 66 RKFLPEVKIVDYSPQQEGKVFFGAWVE-IENEAGDVKQFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARAL+ KE+ D I+V P G+K + I + ++ Sbjct: 124 PMARALLKKEVDDEITVRTPEGDKEWFINSITYM 157 >gi|117620745|ref|YP_854834.1| transcription elongation factor GreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562152|gb|ABK39100.1| transcription elongation factor GreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 157 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +EERP + ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNKLKQELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D S ++ FGA V VE G+ K ++IVG E + +SI SP+ Sbjct: 66 RKCLEELGIVDYSPAQEGKVFFGAWVE-VENEEGETKRFRIVGYDEIFERKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD V P G+ + I ++ Sbjct: 125 ARALLKKEVGDEAIVRTPVGDACWYINEI 153 >gi|167745534|ref|ZP_02417661.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662] gi|317472902|ref|ZP_07932208.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA] gi|167655255|gb|EDR99384.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662] gi|316899622|gb|EFV21630.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTQEGLKTLEDELQDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEVID G I+ G V L + ++ Y IVG EAD+ + +S +PI Sbjct: 69 EQILKNAEVIDEEFQHG-VISLGCLVKLEDLTFKEEVTYHIVGSTEADILNNKISNEAPI 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G ++GD++ V G Y++L V Sbjct: 128 GKALLGAKIGDVVEVEGVGQVNQYKVLDV 156 >gi|90412689|ref|ZP_01220690.1| transcription elongation factor GreB [Photobacterium profundum 3TCK] gi|90326264|gb|EAS42683.1| transcription elongation factor GreB [Photobacterium profundum 3TCK] Length = 156 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D S ++ FGA V +E ++K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEVVKVVDYSPQQDGKVFFGAFVE-IENEEAEQKTFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+ + V P G+K + Sbjct: 125 ARALLKKEVDEEFEVVTPQGKKLW 148 >gi|291520769|emb|CBK79062.1| transcription elongation factor GreA [Coprococcus catus GD/7] Length = 167 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K+++E+ R+ R + A+ EAR GDLSEN EYQAAK +N NE R+ LE ++ A Sbjct: 12 KMKEEIEHRKVVVRKEALAAVKEAREQGDLSENFEYQAAKREKNRNESRIRYLERMVKTA 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +VI + D + TV++ ++ +++ Y+IV DV GL+SI SP+ +AL+G Sbjct: 72 KVIKDHS-KDDEVGLNNTVTVYFEDEDEEETYRIVTTVREDVLHGLISIDSPVGKALLGH 130 Query: 134 ELGDIISV 141 +GD + V Sbjct: 131 RVGDTVHV 138 >gi|290473268|ref|YP_003466134.1| transcription elongation factor and transcript cleavage [Xenorhabdus bovienii SS-2004] gi|289172567|emb|CBJ79336.1| transcription elongation factor and transcript cleavage [Xenorhabdus bovienii SS-2004] Length = 160 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ + ERP + +A+S+A A GD SENAEY K+ + R+ L Sbjct: 7 ITREGWHALDQELKYLWKVERPNVTQAVSDAAALGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D ++ FGA V VE ++ +++VG E + +SI SP+ Sbjct: 67 SKRLDALQIVDPDPRQEGKVFFGAWVK-VENEKAEEHIFRLVGPDEFEPAKKWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK++ D I+V P G Y IL++ Sbjct: 126 ARALLGKQVDDEITVMTPNGMAIYWILEI 154 >gi|220927851|ref|YP_002504760.1| transcription elongation factor GreA [Clostridium cellulolyticum H10] gi|219998179|gb|ACL74780.1| transcription elongation factor GreA [Clostridium cellulolyticum H10] Length = 158 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 89/152 (58%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EGR+ Sbjct: 5 EVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEGRI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S Sbjct: 65 VQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDEEVEYLIVGSTEANPLKSKISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ALIG G+ + V P G ++IL++ Sbjct: 125 SPVGAALIGHTKGETVEVQVPDGVLKFKILEI 156 >gi|239503414|ref|ZP_04662724.1| transcription elongation factor GreB [Acinetobacter baumannii AB900] Length = 164 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D S ++ FGA V +E G +K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYSPEQEGKVYFGAWVD-IENEEGQQKTLRIVGVDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ KE+ D + V+ P G+K + I Sbjct: 125 MARALLSKEVDDEVEVHTPLGKKLWYI 151 >gi|91776106|ref|YP_545862.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91710093|gb|ABE50021.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 165 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ E + ERP+++ ++ A + GD SEN +Y K+ + R+ L Sbjct: 8 ITPEGYARLKDEFEQLYKVERPKVVSDVAWAASNGDRSENGDYIYGKKRLRQIDSRLRFL 67 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + ++I FGA V L + + +Y+IVG E D G +S SP Sbjct: 68 MKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKGYISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+GK+ GD+I V P GE+ +EI+ V Sbjct: 128 LARALLGKQPGDVIRVETPAGEERFEIVDV 157 >gi|330721758|gb|EGG99749.1| Transcription elongation factor GreB [gamma proteobacterium IMCC2047] Length = 170 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++Q E +RP++ +A+SEA A GD ENAEY K+ + R+ L Sbjct: 15 ITPDGRQRLQDEFDQLWHVKRPQVTQAVSEAAAQGDRPENAEYIYGKKQLREIDSRLRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D R+ F A V ++E +G++ Y+IVG E DV +S+ SP Sbjct: 75 SKRLEHLKVVDRLPADQTRLFFCAWV-MLENEAGEQLEYRIVGPDEFDVHPAYISMDSPT 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+ K+ GD + V AP G YEI+ V + Sbjct: 134 AKALMKKQTGDEVEVVAPSGSVYYEIIAVRY 164 >gi|153814499|ref|ZP_01967167.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756] gi|317500540|ref|ZP_07958762.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|145847993|gb|EDK24911.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756] gi|316898050|gb|EFV20099.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] Length = 167 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ Sbjct: 4 KLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRIRY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A +++ + D I TV + ++ + + Y+IV +GLVSI SP Sbjct: 64 LERMLKTAVIVEDESKE-DEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESP 122 Query: 126 IARALIGKELGD--IISVNAPGG 146 + +AL+G + GD I VN G Sbjct: 123 LGKALLGHKEGDRVFIKVNDDFG 145 >gi|291619237|ref|YP_003521979.1| GreB [Pantoea ananatis LMG 20103] gi|291154267|gb|ADD78851.1| GreB [Pantoea ananatis LMG 20103] Length = 158 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+ Sbjct: 66 SKSLEQLRIVDYSPQQDGKVFFGAWVE-VENDEGDVKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ K +GD V P G + + ++ ++ Sbjct: 125 ARALLKKAVGDAAVVETPAGPACWYVNEISYV 156 >gi|313201051|ref|YP_004039709.1| transcription elongation factor greb [Methylovorus sp. MP688] gi|312440367|gb|ADQ84473.1| transcription elongation factor GreB [Methylovorus sp. MP688] Length = 164 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K + R+ L Sbjct: 8 ITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQIDSRLRFL 67 Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A ++D S +++ FGA VSL + +Y+IVG E D G +S SP Sbjct: 68 MKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRGYISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARA++GK++GD++ P GE++YEI+ + Sbjct: 128 LARAMLGKQIGDVVRAQTPAGEESYEIIDI 157 >gi|253998948|ref|YP_003051011.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4] gi|253985627|gb|ACT50484.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4] Length = 169 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K + R+ L Sbjct: 13 ITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQIDSRLRFL 72 Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A ++D S +++ FGA VSL + +Y+IVG E D G +S SP Sbjct: 73 MKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRGYISWISP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARA++GK++GD++ P GE++YEI+ + Sbjct: 133 LARAMLGKQIGDVVRAQTPAGEESYEIIDI 162 >gi|108758975|ref|YP_631387.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622] gi|108462855|gb|ABF88040.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622] Length = 176 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ +EL EERP++ +S A A GD SENAEY K+ + R+ L Sbjct: 25 LTRAGAERLHRELVHLLNEERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRLRFL 84 Query: 67 E------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + I+T AE D S R+ FGATVSL E G + YQIVG E D G + Sbjct: 85 QKRLDTATIVTPAEQTDRS-----RVFFGATVSL-EDEDGGRSTYQIVGSDEIDASGGRI 138 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ RAL+ K +GD + V P G+ ++ + + Sbjct: 139 SVESPMGRALLRKAVGDSVEVRRPRGDIELTVVDIRY 175 >gi|167756790|ref|ZP_02428917.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402] gi|237734508|ref|ZP_04564989.1| transcription elongation factor greA [Mollicutes bacterium D7] gi|167702965|gb|EDS17544.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402] gi|229382328|gb|EEO32419.1| transcription elongation factor greA [Coprobacillus sp. D7] Length = 161 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 88/141 (62%), Gaps = 2/141 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R Sbjct: 4 EKVLLTQSGVEKLEQERDNLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120 + E++ ++ AEVI M + G TV++++ + D ++YQIVG E D +G + Sbjct: 64 IKEIDYMLQNAEVISEEQMDLKVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISV 141 S SP+A+A++G + +I++V Sbjct: 124 SNESPLAKAVLGHGVNEIVTV 144 >gi|160938130|ref|ZP_02085486.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC BAA-613] gi|158438934|gb|EDP16690.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC BAA-613] Length = 167 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTANDIKKMQEEIEYRKLVVRREALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I ++ G+ + G TV + + + + Y++V + GL+SI SP+ Sbjct: 65 EKMIKTARIISNNSREGE-VGLGDTVEVYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123 Query: 127 ARALIGKELGDIISV 141 +A+ G+++GD + V Sbjct: 124 GKAIRGRKMGDKVYV 138 >gi|225181739|ref|ZP_03735178.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT 1] gi|225167610|gb|EEG76422.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT 1] Length = 156 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV K + +T G +K+++EL + + +R + I A ++GD+SEN+EY+ AK Q Sbjct: 1 MVSKEVILTQGGLEKLEKELDYLKSTKRREVADRIKTAISFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ ++I+ T S + ++ G+TV L + + Y IVG EA+ Sbjct: 61 EGRIITLEKMLRNVKLINEETDS-ETVSVGSTVILKDLEFDEDFEYTIVGSAEANPAENK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK+L D++ V+ P G Y+I+++ Sbjct: 120 ISNESPVGKAILGKKLNDVVEVSVPAGILKYQIVKI 155 >gi|323465752|gb|ADX69439.1| Transcription elongation factor [Lactobacillus helveticus H10] Length = 153 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYKQIEDEI-VRLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ T ++ +G TV L + + + Y+IVG EAD+ G +S SP+ Sbjct: 66 GKQLKYAEIV--KTTDDGKVDWGKTVVLKFDDDDETEEYKIVGHMEADLADGKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ +E G + +V AP GE I++V Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEV 152 >gi|291551193|emb|CBL27455.1| transcription elongation factor GreA [Ruminococcus torques L2-14] Length = 160 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 82/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G I+ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYAGLKAIEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + ++I G V + + ++ ++IVG EA+ G +S SP+ Sbjct: 69 EAILKNAEVVVEDEVDLNKINVGCAVKVYDITFDEEMEFKIVGSTEANSLEGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIGK++ D++ V G Y++L + Sbjct: 129 GHALIGKKINDVVDVETQAGVIQYKVLDI 157 >gi|120556642|ref|YP_960993.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8] gi|120326491|gb|ABM20806.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8] Length = 171 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 3/143 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITPEGEQALRDELQFLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDR-RVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D R+ F A V+ +E G ++ Y+IVG E D++ G +SI+SP Sbjct: 74 LSKRLDEVSVVDRLPEDRSRVFFAAWVT-IEDEDGSEQEYRIVGADEFDLEKGYLSINSP 132 Query: 126 IARALIGKELGDIISVNAPGGEK 148 +ARALIGK L D +SV P G K Sbjct: 133 LARALIGKHLDDEVSVRTPEGWK 155 >gi|313895523|ref|ZP_07829079.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 137 str. F0430] gi|312975649|gb|EFR41108.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 137 str. F0430] Length = 156 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 2/152 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELEN I +++ I G + G+ V++ + + + + IVG EAD G +S Sbjct: 65 QELENKIRNSDI--IKAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+G+++G +I+V+AP G Y+I+ + Sbjct: 123 SPLGMALLGQKIGKVINVSAPAGMIRYKIVDI 154 >gi|297566642|ref|YP_003685614.1| transcription elongation factor GreA [Meiothermus silvanus DSM 9946] gi|296851091|gb|ADH64106.1| transcription elongation factor GreA [Meiothermus silvanus DSM 9946] Length = 159 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T++G ++Q EL + +R I A +A GDL ENA Y A+ Q N+ R++ Sbjct: 7 VYLTAEGLKRLQDELTTLKTVKRQEIAAAFEQAIEEGDLRENAGYDEARRAQWDNDRRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE+I+ RA V++ + + G +V L E ++G + + IVG EADV +G +S S Sbjct: 67 ELESILARAVVVEAGNGTPLEVGLGVSVEL-ETDTGARMSLTIVGSHEADVFNGKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ + L+GK++GD + +P G ++Y I+++ + Sbjct: 126 PMGQRLMGKKVGDRVEYPSPKGVQSYTIVELSY 158 >gi|149378112|ref|ZP_01895832.1| transcription elongation factor GreB [Marinobacter algicola DG893] gi|149357597|gb|EDM46099.1| transcription elongation factor GreB [Marinobacter algicola DG893] Length = 156 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 95/151 (62%), Gaps = 5/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++QQEL + ++ERP + K + A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITPEGYAELQQELDYLWRKERPEVTKKVQWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISS 124 N +++ V++ +++ ++ FGA V+LV++ D+K ++++VG E + VS+++ Sbjct: 66 RNRLSKLRVVEYNSVQEGKVYFGAWVTLVDE---DEKTLSFRMVGPDEIYGKKNYVSVNA 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+A +GK +GD + V P ++ ++I ++ Sbjct: 123 PVAKACLGKSVGDTVVVRTPENQREWDISKI 153 >gi|222056183|ref|YP_002538545.1| transcription elongation factor GreB [Geobacter sp. FRC-32] gi|221565472|gb|ACM21444.1| transcription elongation factor GreB [Geobacter sp. FRC-32] Length = 161 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++++E + + ERPR+ +A+S+A A GD SENAEY K+ + R+ L Sbjct: 7 ITPEGARRLREEFEYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ +I FGA V L E G++ Y+IVG E D G +S+ SP+ Sbjct: 67 MKRLDVLTVVEDQPERKGKIFFGAWVRL-ENEEGNEVVYRIVGPDEFDPGKGYISVDSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ALIGK+ GD + V P G T+ I+ V Sbjct: 126 AKALIGKQEGDEVVVRRPAGVATFTIIDV 154 >gi|58040290|ref|YP_192254.1| transcription elongation factor GreB [Gluconobacter oxydans 621H] gi|58002704|gb|AAW61598.1| Transcription elongation factor GreB [Gluconobacter oxydans 621H] Length = 168 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 6/162 (3%) Query: 1 MVDKIPVTS----KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56 M +K P++ KG ++ EL+ Q+ERPRI++ +S A GD SENA+YQ K Sbjct: 1 MAEKTPLSHYLSPKGAVVMRAELKELAQKERPRIVEIVSWAAGNGDRSENADYQYGKRRL 60 Query: 57 NLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + RM L + A ++D + + DR+ FGATV+ V+++ + I+G E+D+ Sbjct: 61 REIDRRMRFLGKRLENAVIVDPAAQTTRDRVFFGATVTYVDEDDVE-HTVTILGVDESDL 119 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G VS+ SP+ARAL+ +GD+ + P G EIL++++ Sbjct: 120 ARGEVSLMSPVARALMRTRVGDVAMLQTPRGPVEIEILKIVY 161 >gi|302388756|ref|YP_003824577.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] gi|302199384|gb|ADL06954.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] Length = 158 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 89/151 (58%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G K+++EL + + +R + I +A ++GDLSEN+EY AK Q EG++A Sbjct: 6 VVLTQEGLRKLEKELEYLKSVKRKEVADRIKQAISFGDLSENSEYDEAKNEQAFVEGKIA 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + A+VID + +S + + G+ V + + ++ + Y IV EA+ +S S Sbjct: 66 MLEEKLRNAKVIDDADISTETVTLGSKVLIRDLDTEEAIEYTIVSSAEANPIDFKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +AL+G + GD+I ++ P G+ Y + ++ Sbjct: 126 PVGKALMGAKKGDVIEISVPAGQVRYRVEEI 156 >gi|238855578|ref|ZP_04645880.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3] gi|260664770|ref|ZP_05865621.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|282932736|ref|ZP_06338144.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|238831795|gb|EEQ24130.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3] gi|260561253|gb|EEX27226.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|281303146|gb|EFA95340.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] Length = 153 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 91/147 (61%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G+ I++E++ ++ RP IKA+ EAR+ GDLSEN+EY +A KEL++L E R+ Sbjct: 7 MTPQGYKLIEEEIK-NLKKSRPIKIKALQEARSLGDLSENSEYTEAKKELRHL-ESRLRY 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + AE+I + ++ G V L ++ Y+IVG EAD+++G +S SP Sbjct: 65 LDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEADLEAGKISFDSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + A++ KE G ++V AP G +YE+ Sbjct: 123 LGVAIMKKEAGSCVTVEAPAG--SYEV 147 >gi|313897330|ref|ZP_07830873.1| transcription elongation factor GreA [Clostridium sp. HGF2] gi|312957700|gb|EFR39325.1| transcription elongation factor GreA [Clostridium sp. HGF2] Length = 159 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 4/152 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63 Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + +LE +I AE+I D + ++ G+TV++++ ++ +++ Y IVG EAD +G + Sbjct: 64 IRDLEAMIANAEIISEDKKAATKKTVSLGSTVTILDMSTNEEETYNIVGSIEADPLNGKL 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S +P+A +L+ ++GD++ + E+ Y++ Sbjct: 124 SNITPLATSLMDHKIGDVVEIET--AEEPYQV 153 >gi|329297354|ref|ZP_08254690.1| transcription elongation factor GreB [Plautia stali symbiont] Length = 211 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 3/146 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLRAEHDHLWNEKRPEITRIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V VE GD K ++IVG E D +SI S Sbjct: 66 RKCLAELKIVDYAPQQEGKVFFGAWVE-VENEQGDVKRFRIVGPDEIYGDTVKDYISIDS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150 P+ARALI KE+ + ++VN P G+K + Sbjct: 125 PMARALIKKEVDEEVTVNTPEGQKVW 150 >gi|319775510|ref|YP_004137998.1| transcription elongation factor [Haemophilus influenzae F3047] gi|329122448|ref|ZP_08251035.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC 11116] gi|317450101|emb|CBY86315.1| transcription elongation factor [Haemophilus influenzae F3047] gi|327473730|gb|EGF19149.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC 11116] Length = 162 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ + QEL++ +EER ++ +A+S+A A GD SENAEY K + R+ L Sbjct: 7 ITRQGWLALDQELKFLWKEERSKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+ Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 ARALIGK L D + V P G Sbjct: 126 ARALIGKTLDDEVRVETPSG 145 >gi|312882877|ref|ZP_07742609.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC BAA-2122] gi|309369396|gb|EFP96916.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC BAA-2122] Length = 162 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E + E RP + K ++ A GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKAEHDYLWHERRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E ++GD K ++IVG +E D + +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENDAGDTKKFRIVGPEEIYGDAKE-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D V+ P GEK + I Sbjct: 124 PMARALLKKEVDDEFVVHTPEGEKEWFI 151 >gi|169350015|ref|ZP_02866953.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552] gi|169293228|gb|EDS75361.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552] Length = 161 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 88/141 (62%), Gaps = 2/141 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R Sbjct: 4 EKVLLTQSGLEKLEQERDRLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120 + E++ ++ E+I M + G TV++++ + D ++Y+IVG E D +G + Sbjct: 64 IKEIDYMLQNVEIISEDQMDLKVVKPGTTVTILDLSETDAEPESYKIVGFTETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISV 141 S SP+A+A+IG ++ +I++V Sbjct: 124 SNESPLAKAVIGHDVNEIVTV 144 >gi|300362488|ref|ZP_07058664.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|300353479|gb|EFJ69351.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] Length = 153 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L+ + +E+I SG I G+ V L+ + D + Y+IVG EAD+ G Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDKSGT-IDLGSNVKLLFEGDDDAEEYRIVGRMEADLTKGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152 >gi|323485861|ref|ZP_08091196.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323693200|ref|ZP_08107418.1| transcription elongation factor [Clostridium symbiosum WAL-14673] gi|323400849|gb|EGA93212.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323502683|gb|EGB18527.1| transcription elongation factor [Clostridium symbiosum WAL-14673] Length = 160 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ L Sbjct: 8 LTYAGLKQYEDELQDLKVNKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEAL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AEV+ + D+I+ G V L++ ++ ++IVG EA+ +S SP+ Sbjct: 68 EKLLKNAEVVVEDEIDLDKISVGCKVKLLDVEEDEEMEFKIVGSTEANSLQNKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK+ G+ + V G Y+IL++ Sbjct: 128 GHALLGKKEGETVQVETQAGMIHYKILEI 156 >gi|116332834|ref|YP_794361.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] gi|116098181|gb|ABJ63330.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] Length = 160 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMA 64 P+T+ G+ +Q ++ + +RP I ++EARA+GDLSENAEY AAK +L++L E ++ Sbjct: 9 PITAAGYQDLQAKIA-ALEADRPEKIAILAEARAHGDLSENAEYSAAKRDLRHL-ESQLR 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ S + D + G V++ + ++ YQ+VG QEAD+ +G ++ S Sbjct: 67 FYTKQLQYAKVVAPS--NSDVVDLGKWVTVTFLDDHEQATYQLVGTQEADLAAGKITRVS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +AL+G GD ++++AP +I QV Sbjct: 125 PLGKALLGHHPGDTVTISAPHANYRVKINQV 155 >gi|225389819|ref|ZP_03759543.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme DSM 15981] gi|225044129|gb|EEG54375.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme DSM 15981] Length = 160 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ Y IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDTDKINIGCKVKLLDVEFDEEMEYFIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ AL+GK +G+ + V G Y++L + Sbjct: 121 ISNESPVGHALLGKGVGETVDVETQAGTIQYKVLNI 156 >gi|328463913|gb|EGF35431.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC 5463] Length = 153 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ T ++ G TV L + + + Y+IVG EAD+ G +S SP+ Sbjct: 66 GKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ +E G + +V AP GE I++V Sbjct: 124 GQAIMKQEAGGVATVEAPAGEHKVTIVEV 152 >gi|291458829|ref|ZP_06598219.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418083|gb|EFE91802.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] Length = 167 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 2/146 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +I +E+ R+ RP++I+A+ EAR++GDLSEN EY AAK N NE R+A L Sbjct: 5 LTKADVKRIWEEIEKRKLSLRPKLIEAVKEARSHGDLSENFEYYAAKREMNQNESRIAYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ + D + TV L+ + G++++Y+IV S L+S SP+ Sbjct: 65 ERMLRFATIVSDRS-ERDEVGLNDTVRLLFEEEGEEESYRIVTSIRGHSLSNLISNKSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 +AL+ +GD ++V PGG K+Y + Sbjct: 124 GKALLKHRVGDRVTVR-PGGGKSYTV 148 >gi|153828361|ref|ZP_01981028.1| transcription elongation factor GreB [Vibrio cholerae 623-39] gi|229513643|ref|ZP_04403107.1| transcription elongation factor GreB [Vibrio cholerae TMA 21] gi|229521789|ref|ZP_04411207.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80] gi|229527359|ref|ZP_04416751.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)] gi|261211278|ref|ZP_05925567.1| transcription elongation factor GreB [Vibrio sp. RC341] gi|262166724|ref|ZP_06034461.1| transcription elongation factor GreB [Vibrio mimicus VM223] gi|148876191|gb|EDL74326.1| transcription elongation factor GreB [Vibrio cholerae 623-39] gi|229334991|gb|EEO00476.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)] gi|229341383|gb|EEO06387.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80] gi|229349520|gb|EEO14476.1| transcription elongation factor GreB [Vibrio cholerae TMA 21] gi|260839779|gb|EEX66390.1| transcription elongation factor GreB [Vibrio sp. RC341] gi|262026440|gb|EEY45108.1| transcription elongation factor GreB [Vibrio mimicus VM223] Length = 160 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPTGMKEWFI 151 >gi|162147888|ref|YP_001602349.1| transcription elongation factor greB [Gluconacetobacter diazotrophicus PAl 5] gi|161786465|emb|CAP56047.1| putative transcription elongation factor greB [Gluconacetobacter diazotrophicus PAl 5] Length = 199 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ L Sbjct: 42 VTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 101 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +A V+D + + DR+ FGATV+ V ++ ++ IVG E+D+ +G VS++SP Sbjct: 102 TRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDESDLAAGQVSLASP 160 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+G +GD + + P G + EIL++ + Sbjct: 161 VARALLGGRVGDEVRLLTPAGAEMIEILRIAY 192 >gi|298245773|ref|ZP_06969579.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] gi|297553254|gb|EFH87119.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G+ K ++ L + + +R + EA+ GD+SE++ Y+ AK Q EG + Sbjct: 16 VRLTPQGYTKNKERLDYLRNVKRREAADYVHEAKEAGDISESSAYEDAKNEQAKVEGEII 75 Query: 65 ELENIITRAEVIDISTMSGDR----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ELE+++ AEVI ++ DR + G V L E SG K+ ++IV EAD +SGL+ Sbjct: 76 ELEHLLAVAEVITPESL--DRHDGTVRIGMKVEL-ESESGAKRVFKIVETYEADPKSGLI 132 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+ +AL+G + GD ++V PGG Y IL + + Sbjct: 133 SDQSPVGKALMGHKEGDEVTVTTPGGVTGYTILSITTM 170 >gi|74316538|ref|YP_314278.1| transcription elongation factor GreB [Thiobacillus denitrificans ATCC 25259] gi|74056033|gb|AAZ96473.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] Length = 187 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ E + ERP++++ IS A + GD SEN +Y K+ + R+ L Sbjct: 33 MTPAGYARLDAEFNQLWKVERPKLVETISWAASNGDRSENGDYIYGKKRLREVDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D +T + D++ FGATV++ + + G + Y IVG EAD G ++ SP Sbjct: 93 SKRLEHAEVVDPATRAATDQVFFGATVTVADAD-GSESTYAIVGLDEADASRGRIAWMSP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARAL+ GD + V P G + EI++V ++ Sbjct: 152 MARALLKAREGDTVVVQTPDGRREVEIIEVRYV 184 >gi|262376606|ref|ZP_06069834.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] gi|262308316|gb|EEY89451.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] Length = 164 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K++ + R+ L Sbjct: 6 ITRAGHDKLVAELKNLWHEERPEITKKVNWAASLGDRSENADYQYNKQILRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + ++ID S ++ FGA V +E G++K +IVG D+ D +SISSP Sbjct: 66 GKRLEELKIIDFSPEQEGKVYFGAWVE-IENEEGEQKTLRIVGVDEIYDHHPQHISISSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+GK++ D V P G+K + I Sbjct: 125 MARALLGKQVDDEAEVLTPSGKKLWFI 151 >gi|262199269|ref|YP_003270478.1| transcription elongation factor GreB [Haliangium ochraceum DSM 14365] gi|262082616|gb|ACY18585.1| transcription elongation factor GreB [Haliangium ochraceum DSM 14365] Length = 173 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++EL ERPR+ + +++A A GD SENAEY K + R+ L Sbjct: 15 ITPEGARVLREELEQLWLVERPRVTQEVADAAAQGDRSENAEYIYGKRRLREIDRRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ R+ FGA V+L + G + Y+IVG E DV +G +S+ +P+ Sbjct: 75 GKRLDSLTVVSEPPSDPKRVFFGAWVTLEDDEDGKEVVYRIVGPDEFDVSAGKISMDAPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+GK GD ++V P GE Y I++V + Sbjct: 135 GRALLGKREGDEVTVKRPKGEVVYTIVEVRY 165 >gi|197117113|ref|YP_002137540.1| transcription elongation factor GreA/GreB domain-containing protein [Geobacter bemidjiensis Bem] gi|197086473|gb|ACH37744.1| transcription elongation factor GreA/GreB domain protein [Geobacter bemidjiensis Bem] Length = 158 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 94/152 (61%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 ++++G ++Q+ + + ERPR++K +++A A GD SENAEY + K L+ ++ E Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 61 Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++ R +V+ + ++ ++FG VS E G+++ YQ+VG E DV +G +S+ Sbjct: 62 LRHLGDRLKVVKVVYPPLNPSTVSFGCWVSY-EDEEGEERCYQLVGPDEFDVTAGKISVD 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+G+++ D I++ P G+ T I+ + Sbjct: 121 SPVGKALLGRKVDDEITIKRPAGDLTVTIVAI 152 >gi|311778834|gb|ADQ08317.2| transcription elongation factor [Mycoplasma hyorhinis HUB-1] gi|330723604|gb|AEC45974.1| transcription elongation factor GreA [Mycoplasma hyorhinis MCLD] Length = 164 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 86/140 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T + + ++EL ER ++I I AR GDLSENAEY AA+E Q + E R Sbjct: 8 EEIFLTKESLESYKKELNQLINVERNKVIDEIKSAREQGDLSENAEYDAAREKQGIIEAR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E+I+++A++I+ + + D I G+ VS++ + N QIVG +A+ +S Sbjct: 68 ILEIESILSKAKLIENTGLKSDEITIGSKVSILNLKTQTSHNVQIVGSLDANPFQNKISN 127 Query: 123 SSPIARALIGKELGDIISVN 142 SP+A ALIG++ G+ + ++ Sbjct: 128 LSPLASALIGRKAGEEVEID 147 >gi|307298990|ref|ZP_07578792.1| GreA/GreB family elongation factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306915415|gb|EFN45800.1| GreA/GreB family elongation factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 157 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 9/155 (5%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +GF+ +++EL +++ I + I EAR GDLSEN+EY AK Q + R+ Sbjct: 6 IYLTQEGFNGMKEELESLRKKLMYDIAERIKEARELGDLSENSEYDEAKNEQGRIDSRIK 65 Query: 65 ELENIITRAEVI----DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +LE I+ AE+I D+ST + G V L+ ++ +K ++IV QEA++ G + Sbjct: 66 QLEEILNNAEIIEDDGDLST-----VKLGYVVELLNIDTNEKSQFRIVNAQEANIFEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI R ++ ++ +++ V P G Y+IL + Sbjct: 121 SSDSPIGRGVLTHKVNEVVRVKTPAGWAKYKILTI 155 >gi|54307404|ref|YP_128424.1| transcription elongation factor GreB [Photobacterium profundum SS9] gi|46911824|emb|CAG18622.1| putative transcription elongation factor GreB [Photobacterium profundum SS9] Length = 156 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D S ++ FGA V +E ++K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEIVKVVDYSPQQDGKVFFGAFVE-IENEEAEQKAFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 ARAL+ KE+ + V P G+K + Sbjct: 125 ARALLKKEVDEEFEVVTPQGKKLW 148 >gi|295425713|ref|ZP_06818400.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] gi|295064729|gb|EFG55650.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] Length = 153 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ R +++RPR IK + +AR+ GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKKIEDEI-ARLKKDRPRRIKILQQARSMGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ ++ G+TV L + + YQIVG EAD+ G Sbjct: 60 SRLRYLGKQLKYAEVIEAKNYG--KVNMGSTVVLKFDDDEKTEEYQIVGRMEADLAKGKT 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ +A++ ++ G ++V+AP G+ + I++V Sbjct: 118 AFDSPLGQAIMKQQAGSTVTVSAPAGDYSVTIVEV 152 >gi|91791609|ref|YP_561260.1| transcription elongation factor GreB [Shewanella denitrificans OS217] gi|91713611|gb|ABE53537.1| transcription elongation factor GreB [Shewanella denitrificans OS217] Length = 166 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+ EL + +E RP I K ++ A + GD SENA+Y+ K L +GR+ L Sbjct: 12 ITAEGLAKLTHELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVRFL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 I +V+ + ++ FGA V +E + G KK ++IVG E D + G +SI S Sbjct: 72 RKRIEALKVVPYAAEQEGKVFFGAWVE-IENDEGVKKRFRIVGPDEIYGDAK-GYISIDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ KE+ D SV P GE+ + I ++ + Sbjct: 130 PMARALLKKEVDDDASVLTPTGEQFWYINKIFY 162 >gi|260886921|ref|ZP_05898184.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|330839288|ref|YP_004413868.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|260863350|gb|EEX77850.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|329747052|gb|AEC00409.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] Length = 156 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T +G+ K+Q++L + + R + + + A A GDLSEN+EY AK Q EG + Sbjct: 5 RVMLTEEGYKKLQEKLDYLKSVRRIEVSERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE I +++I S D + G+TV + + +++ Y +VG EAD +S Sbjct: 65 LDLEAKIRNSDIIQ-GGASSDTVQMGSTVVVKDVEFDEQETYTLVGSAEADPTEFKISNE 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ A+IGK++GD + V+AP G YE++++ Sbjct: 124 SPVGAAIIGKKVGDRVDVHAPAGIIQYEVVEI 155 >gi|302672112|ref|YP_003832072.1| transcription elongation factor GreA/GreB1 [Butyrivibrio proteoclasticus B316] gi|302396585|gb|ADL35490.1| transcription elongation factor GreA/GreB1 [Butyrivibrio proteoclasticus B316] Length = 161 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 83/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K + EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ L Sbjct: 8 LTYEGLKKYEDELHELKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEAL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + ++I+ G V + + ++ Y+IVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEEDVDLNKISIGCKVKIKDLEFDEELEYKIVGSSEANSLKGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG + G +SV G Y++L + Sbjct: 128 GKALIGAKKGQTVSVETQAGVIKYKVLSI 156 >gi|255318589|ref|ZP_05359822.1| transcription elongation factor GreB [Acinetobacter radioresistens SK82] gi|262378815|ref|ZP_06071972.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] gi|255304581|gb|EET83765.1| transcription elongation factor GreB [Acinetobacter radioresistens SK82] gi|262300100|gb|EEY88012.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] Length = 159 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D++ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRAGHDRLVAELQQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + ++D S R+ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELRIVDHSPEQDGRVYFGAWVD-IENEYGEQKTLRIVGVDEIYDHHPQHISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K++ D I V P G+K + I Sbjct: 125 MARALLSKQVNDEIEVMTPSGKKQWYI 151 >gi|209542505|ref|YP_002274734.1| transcription elongation factor GreB [Gluconacetobacter diazotrophicus PAl 5] gi|209530182|gb|ACI50119.1| transcription elongation factor GreB [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ L Sbjct: 23 VTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 82 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +A V+D + + DR+ FGATV+ V ++ ++ IVG E+D+ +G VS++SP Sbjct: 83 TRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDESDLAAGQVSLASP 141 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+G +GD + + P G + EIL++ + Sbjct: 142 VARALLGGRVGDEVRLLTPAGAEMIEILRIAY 173 >gi|110005071|emb|CAK99401.1| probable transcription elongation factor grea protein [Spiroplasma citri] Length = 156 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 2/142 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++I +T +G +++EL RP +I+ + EARA GDLSENA+Y AA+ Q E Sbjct: 1 MNEEILLTKEGIKDLKEELDNLINVIRPEVIEELKEARAQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+++T+A E+ ++ + +G I G+TV+ K +IVG EA+ Sbjct: 61 GRIKEIESLLTKAKEIKEVKSKTG-IIKLGSTVTFTNLLINKKYELKIVGAVEANPFENT 119 Query: 120 VSISSPIARALIGKELGDIISV 141 +S SPIA+A+IGK+ GD+I + Sbjct: 120 ISNESPIAKAIIGKKAGDLIEI 141 >gi|320157698|ref|YP_004190077.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O] gi|319933010|gb|ADV87874.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O] Length = 160 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D + V P G K + I Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151 >gi|190575306|ref|YP_001973151.1| transcription elongation factor GreB [Stenotrophomonas maltophilia K279a] gi|190013228|emb|CAQ46862.1| putative transcription elongation factor [Stenotrophomonas maltophilia K279a] Length = 168 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+ Sbjct: 15 ITASGHARLKAELDDLWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA V L +SG+ Y+IVG E D G +SI S Sbjct: 73 YLTKRLESLRVVDTTPTDPLAVFFGAWVELENVDSGETSRYRIVGPDETDAGLGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K L D SV PGG+ T+ ++ V Sbjct: 133 PLARALLKKRLDDEFSVELPGGQFTFAVISV 163 >gi|310658260|ref|YP_003935981.1| transcription elongation factor [Clostridium sticklandii DSM 519] gi|308825038|emb|CBH21076.1| transcription elongation factor [Clostridium sticklandii] Length = 164 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T +GF KI+ EL + R + + I A ++GD+SEN+EY AK Q E R+ Sbjct: 7 EILLTEEGFKKIEDELELLKTVRRKEVAERIKVAISFGDISENSEYDEAKNEQAQLEERI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS----GDKKNYQIVGDQEADVQSGL 119 +LENI+ A +ID S++ + + G+ V + K++ ++ Y IVG EAD Sbjct: 67 LKLENILRVAVIIDESSIDTNLVTVGSVVKIEFKDALTDEVEEDEYTIVGSAEADPSESK 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI +AL+G+ +GD I V P G +IL++ Sbjct: 127 ISNESPIGKALLGRVVGDEIDVQVPDGISKIKILEI 162 >gi|258510226|ref|YP_003183660.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476952|gb|ACV57271.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 158 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+ Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+GK++G I+ VN P G ++IL++ Sbjct: 121 ISNESPVGKALLGKQIGSIVEVNVPAGVIKFKILEI 156 >gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] Length = 153 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L+ + +E+I SG I G+ V+L+ + + Y+IVG EAD+ G Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+ K+ G ++V AP G +I+ V Sbjct: 117 ISFDSPLGQALMKKKAGATVTVEAPAGSYDVKIIAV 152 >gi|116628860|ref|YP_814032.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|238852826|ref|ZP_04643231.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282852524|ref|ZP_06261866.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|311111317|ref|ZP_07712714.1| transcription elongation factor GreA 1 (Transcript cleavage factor greA 1) [Lactobacillus gasseri MV-22] gi|116094442|gb|ABJ59594.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|238834520|gb|EEQ26752.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282556266|gb|EFB61886.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|311066471|gb|EFQ46811.1| transcription elongation factor GreA 1 (Transcript cleavage factor greA 1) [Lactobacillus gasseri MV-22] Length = 153 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L+ + +E+I SG I G+ V L+ + D + Y+IVG EAD+ G Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVKLLFEGDDDAEEYRIVGRMEADLAKGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 117 ISFDSPLGQALMKQKAGATVTVQAPAGSYDVKIIAV 152 >gi|154505278|ref|ZP_02042016.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149] gi|153794476|gb|EDN76896.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149] Length = 161 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 81/149 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL Sbjct: 9 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + D+I G V + + ++ + IVG E + G +S SP+ Sbjct: 69 EGILKNAEVVVEDEVDLDKINVGCKVKVFDITFDEEMEFNIVGSTEVNSLEGKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK++GD + V G Y++L + Sbjct: 129 GQALMGKKVGDTVDVETQAGVIQYKVLDI 157 >gi|161486671|ref|NP_933028.2| transcription elongation factor GreB [Vibrio vulnificus YJ016] gi|60392329|sp|Q7MPX6|GREB_VIBVY RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB Length = 160 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D + V P G K + I Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151 >gi|239817299|ref|YP_002946209.1| transcription elongation factor GreB [Variovorax paradoxus S110] gi|239803876|gb|ACS20943.1| transcription elongation factor GreB [Variovorax paradoxus S110] Length = 190 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ L Sbjct: 33 MTPAGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D++ FGATV V++ +GD+++ I+G EAD VS SP Sbjct: 93 TKRLEIAEVTDPSVHHGSDQVFFGATVRYVDE-TGDERSVTILGIDEADSAQSQVSWISP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ GD++ + PGG E+L V + Sbjct: 152 IARALLKSREGDVVKLVTPGGAHEVELLSVSY 183 >gi|218960396|ref|YP_001740171.1| putative transcription elongation factor [Candidatus Cloacamonas acidaminovorans] gi|167729053|emb|CAO79964.1| putative transcription elongation factor [Candidatus Cloacamonas acidaminovorans] Length = 159 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 5/153 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++Q+ + ERP +IKA++ AR +GDLSENAEY+AA+E Q + + L Sbjct: 7 ITKTGMQRLQKRIN-ELLAERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSGL--VSI 122 +VID S D + FG + N+ + Y +VG +E + + G+ VSI Sbjct: 66 RRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSI 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI +AL+ K++G+I V AP GE+ +I ++ Sbjct: 126 VSPIGKALLSKKIGEIAIVKAPIGERKLKIREI 158 >gi|161501839|ref|NP_759835.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6] gi|31340138|sp|Q8DDU7|GREB_VIBVU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|319999141|gb|AAO09362.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6] Length = 160 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D + V P G K + I Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151 >gi|325265032|ref|ZP_08131759.1| transcription elongation factor GreA [Clostridium sp. D5] gi|324029722|gb|EGB91010.1| transcription elongation factor GreA [Clostridium sp. D5] Length = 167 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 5/148 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK+ T +KI++E+ R+ R I+A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 1 MYDKL--TKSDIEKIREEIEHRKLVVRREAIEAVKEARAHGDLSENFEYHAAKKDKNKNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ A ++D T D + TV L + + + Y++V +GL+ Sbjct: 59 SRIRYLERMLKTAVIVD-DTSQEDEVGINNTVELYFEEDDEVETYRLVTSVRGSSINGLI 117 Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146 SI SPI +A++G+++ D + VN G Sbjct: 118 SIESPIGKAILGRKVNDRVFVKVNEDFG 145 >gi|327485185|gb|AEA79592.1| Transcription elongation factor GreB [Vibrio cholerae LMA3894-4] Length = 169 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151 >gi|293115788|ref|ZP_05793017.2| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] gi|292808216|gb|EFF67421.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] Length = 165 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL+ + R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 15 MTYEGLKKLEDELQDLKVNRRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV D +G I G+TV++ + ++ +++VG EA +S +P+ Sbjct: 75 EKILKNAEVADDEFGAG-VINLGSTVTVYDCEFDEELVFKLVGSTEAKSLENKISNEAPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIGK GD + V P G Y+++ V Sbjct: 134 GKALIGKVAGDEVEVETPSGIMKYKVINV 162 >gi|37197158|dbj|BAC92999.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 185 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 31 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 90 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S Sbjct: 91 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D + V P G K + I Sbjct: 149 PMARALLKKEVDDEVQVPTPSGIKEWFI 176 >gi|145300940|ref|YP_001143781.1| transcription elongation factor GreB [Aeromonas salmonicida subsp. salmonicida A449] gi|142853712|gb|ABO92033.1| transcription elongation factor GreB [Aeromonas salmonicida subsp. salmonicida A449] Length = 157 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + +EERP + ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNKLKEELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D + ++ FGA V VE GD K ++IVG E + +SI SP+ Sbjct: 66 RKCLEELGIVDYAPAQEGKVFFGAWVE-VENEEGDTKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+GD V P G+ + I Sbjct: 125 ARALLKKEVGDEAIVPTPVGDACWYI 150 >gi|161506805|ref|YP_001576759.1| transcription elongation factor GreA [Lactobacillus helveticus DPC 4571] gi|260102224|ref|ZP_05752461.1| transcription elongation factor GreA 1 [Lactobacillus helveticus DSM 20075] gi|160347794|gb|ABX26468.1| transcription elongation factor [Lactobacillus helveticus DPC 4571] gi|260083965|gb|EEW68085.1| transcription elongation factor GreA 1 [Lactobacillus helveticus DSM 20075] Length = 153 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ T ++ G TV L + + + Y+IVG EAD+ G +S SP+ Sbjct: 66 GKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ +E G + +V AP GE I++V Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEV 152 >gi|114049374|ref|YP_739924.1| transcription elongation factor GreB [Shewanella sp. MR-7] gi|113890816|gb|ABI44867.1| transcription elongation factor GreB [Shewanella sp. MR-7] Length = 161 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+ EL +E RP I K ++ A + GD SENA+Y+ K L + R+ L Sbjct: 8 ITREGFEKLNAELNHLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V++ S ++ FGA V +E + GD K+++IVG E ++ +SI +P+ Sbjct: 68 RKRIEAVKVVEYSPQQDGKVFFGAWVQ-IENDDGDIKSFRIVGPDEIYGRNDYISIDAPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K + D + V P GE+ + + Sbjct: 127 ARALLKKAVDDEVIVQTPVGEQMWYV 152 >gi|293400456|ref|ZP_06644601.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305482|gb|EFE46726.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 158 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 1/141 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFYVTKEGLDELLKEQDNLIHVVRDEVILELQEARAQGDLSENADYDAARDHQARVEAR 63 Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELE +I AE+I+ S + G+TV++ + +S +++ Y IVG EAD +G +S Sbjct: 64 IRELEAMIANAEIIEGDKETSSKTVGLGSTVTIKDLSSEEEETYTIVGSIEADPLNGKLS 123 Query: 122 ISSPIARALIGKELGDIISVN 142 +P+A AL+ +LGDI+ V+ Sbjct: 124 NITPLAVALLDNKLGDIVEVS 144 >gi|153802191|ref|ZP_01956777.1| transcription elongation factor GreB [Vibrio cholerae MZO-3] gi|124122265|gb|EAY41008.1| transcription elongation factor GreB [Vibrio cholerae MZO-3] Length = 161 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151 >gi|254468751|ref|ZP_05082157.1| transcription elongation factor GreB [beta proteobacterium KB13] gi|207087561|gb|EDZ64844.1| transcription elongation factor GreB [beta proteobacterium KB13] Length = 160 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF +++EL + +RPR++K +S A + GD SEN +Y K+ + R+ L Sbjct: 8 LTKNGFIYLREELNHLLKVDRPRVVKDVSWAASNGDRSENGDYIYGKKRLRQIDSRVKYL 67 Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +I +++ID + + D++ FGATV + QIVG E D + +S SP Sbjct: 68 LTVIEDSKIIDPLEQENKDKVFFGATVEYENLDKNQINKIQIVGVPEVDPKENKISWLSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++A++GK++G+I+S +P G+K EI+ +++ Sbjct: 128 LSKAILGKQVGEIVSYESPSGQKEIEIMSIIY 159 >gi|225016228|ref|ZP_03705420.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum DSM 5476] gi|224950986|gb|EEG32195.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum DSM 5476] Length = 163 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+++EL + +R + I A ++GDLSEN+EY AK Q + E R+A++ Sbjct: 13 LTGEGLSKLEEELEELKTVKRQEVAAKIKVALSFGDLSENSEYDEAKNEQAMVEARIAQV 72 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ V+D S + D ++ G+ V L + + Y IVG EAD G +S SP+ Sbjct: 73 EAMLKNVHVLDDSDLPTDIVSIGSKVLLKDIEFDEDVEYYIVGSTEADPSEGKISDESPV 132 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G +GD + V P G +E+L++ Sbjct: 133 GKALLGHRVGDRVEVEVPSGMIEFEVLEI 161 >gi|119471395|ref|ZP_01613867.1| transcription elongation factor and transcript cleavage [Alteromonadales bacterium TW-7] gi|119445671|gb|EAW26955.1| transcription elongation factor and transcript cleavage [Alteromonadales bacterium TW-7] Length = 160 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + R+ L Sbjct: 6 ITREGYLQLQQEHDHLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +ID S + ++ FGA V +E GD K ++IVG E + +SI SP+ Sbjct: 66 RKRIPDLNIIDYSPVQDGKVFFGAWVE-IENEQGDIKKFRIVGPDEIYDRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALI K++ D V P G+K + I Sbjct: 125 ARALIKKQVDDDFEVMTPQGKKEWYI 150 >gi|54020301|ref|YP_116197.1| transcription elongation factor [Mycoplasma hyopneumoniae 232] gi|81378424|sp|Q5ZZL8|GREA_MYCH2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|53987474|gb|AAV27675.1| transcription elongation factor [Mycoplasma hyopneumoniae 232] gi|312601624|gb|ADQ90879.1| Transcription elongation factor greA [Mycoplasma hyopneumoniae 168] Length = 160 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+ Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146 Query: 146 GEK-TYEILQVL 156 EK + IL+V+ Sbjct: 147 NEKYSVRILEVI 158 >gi|296533019|ref|ZP_06895667.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC 49957] gi|296266648|gb|EFH12625.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC 49957] Length = 174 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +Q+ELR EERP++++ +S A + GD SENA+YQ K + R+ L Sbjct: 22 MTPSGQAALQEELRALWSEERPKVVEIVSWAASLGDRSENADYQYGKRRLREIDRRVRFL 81 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + R +V+D + + D++ FGA+V+ ++ + + IVG EAD G +S SP Sbjct: 82 RKRLERVQVVDPAAQTRRDQVFFGASVTYAREDDSE-VSVTIVGIDEADADRGRISWVSP 140 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD++ + P G + E+L + + Sbjct: 141 VARALLKARIGDLVRIRTPAGPEEVEVLAITY 172 >gi|153825544|ref|ZP_01978211.1| transcription elongation factor GreB [Vibrio cholerae MZO-2] gi|254285910|ref|ZP_04960872.1| transcription elongation factor GreB [Vibrio cholerae AM-19226] gi|149740829|gb|EDM54920.1| transcription elongation factor GreB [Vibrio cholerae MZO-2] gi|150424092|gb|EDN16031.1| transcription elongation factor GreB [Vibrio cholerae AM-19226] Length = 160 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V P G K + I Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151 >gi|262190726|ref|ZP_06048956.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93] gi|262033403|gb|EEY51911.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93] Length = 161 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V P G K + I Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151 >gi|72080995|ref|YP_288053.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae 7448] gi|123761607|sp|Q4A759|GREA_MYCH7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71914119|gb|AAZ54030.1| transcription elongation factor [Mycoplasma hyopneumoniae 7448] Length = 160 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+ Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146 Query: 146 GEK-TYEILQVL 156 EK + IL+V+ Sbjct: 147 NEKYSVRILEVI 158 >gi|116747675|ref|YP_844362.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] gi|116696739|gb|ABK15927.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] Length = 155 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 83/152 (54%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G+ ++ +EL + + RP +I+ + EAR G EN +Y A+E + + ++ Sbjct: 2 KVPITRLGYHRLLRELFFLRHVVRPEVIEELQEARTGGIKIENQQYMLARERHMVLQKKI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + E++ + FG V + +G+ + YQ+VG E++V G +SI Sbjct: 62 QDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSID 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ R L+G+ G+ + V P G + Y ++ + Sbjct: 122 SPVGRHLVGRREGEEVLVYTPAGVRMYRVVSI 153 >gi|238026489|ref|YP_002910720.1| transcription elongation factor GreB [Burkholderia glumae BGR1] gi|237875683|gb|ACR28016.1| Transcription elongation factor [Burkholderia glumae BGR1] Length = 186 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLQLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S S D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQESTDQVFFGATVDYATED-GEEHTITIVGVDEVDLDRGHVSWVSP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ +GD +++ PGG + ++L V + Sbjct: 150 IARALLKARIGDTVTLVTPGGPQPVDVLDVRY 181 >gi|302387987|ref|YP_003823809.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] gi|302198615|gb|ADL06186.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] Length = 167 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 5/148 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK+ T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 1 MFDKL--TENDIKKMQEEIDYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNQNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE +I A++I + D I TV L ++ +++ Y++V + GL+ Sbjct: 59 SRIRYLEKMIKTAQIISDES-KDDEIGLYNTVDLYFEDEDEEETYKLVTTVRGNSMKGLI 117 Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146 + SP+ +A++G +GD + VN G Sbjct: 118 TSESPLGKAIMGHRVGDRVYVRVNEKTG 145 >gi|71894015|ref|YP_279461.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae J] gi|123775457|sp|Q4A921|GREA_MYCHJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71852142|gb|AAZ44750.1| transcription elongation factor [Mycoplasma hyopneumoniae J] Length = 160 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 ++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+ Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146 Query: 146 GEK-TYEILQVL 156 EK + IL+V+ Sbjct: 147 NEKYSVRILEVI 158 >gi|58336547|ref|YP_193132.1| transcription elongation factor GreA [Lactobacillus acidophilus NCFM] gi|227903098|ref|ZP_04020903.1| transcription elongation factor GreA [Lactobacillus acidophilus ATCC 4796] gi|58253864|gb|AAV42101.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227869084|gb|EEJ76505.1| transcription elongation factor GreA [Lactobacillus acidophilus ATCC 4796] Length = 153 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + +ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQDARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + AE+++ T ++ G TV L + + + Y+IVG EA+++ G +S SP+ Sbjct: 66 DKQLKYAEIVE--TKDDGKVDLGKTVVLKFDDDDETEEYKIVGRMEANLEDGKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G V AP GE I++V Sbjct: 124 GQAIMKKEAGVTSIVEAPAGEYKVTIVEV 152 >gi|325109310|ref|YP_004270378.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM 5305] gi|324969578|gb|ADY60356.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM 5305] Length = 160 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G +K+ E++ + P I ++EAR GDL ENAEY +E Q + + Sbjct: 1 MERQPITRQGHEKLLAEIKHIETVILPEINTRLAEARDEGDLKENAEYHGQREQQGMAQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ L+ + ++D + M + FG+TV++ + D++ Y+ VG E D + Sbjct: 61 KVNLLKTKLANCYIVDKADMPKGVVTFGSTVTVKDLKWDDEEAYEFVGPGEEDYDCEPMK 120 Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SSP+A+A+ GK++GD ++V+ P G + EI+++ Sbjct: 121 ILTSSPLAKAMEGKKVGDKVAVDTPQGVRELEIVKI 156 >gi|256827725|ref|YP_003151684.1| transcription elongation factor GreA [Cryptobacterium curtum DSM 15641] gi|256583868|gb|ACU95002.1| transcription elongation factor GreA [Cryptobacterium curtum DSM 15641] Length = 156 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+++EL + + E+R + I AR +GD+SEN+EY AK Q L E R+AE+ Sbjct: 8 LTEEGKQKLEEELHYLETEKRAEVGARIKVAREFGDISENSEYDDAKNEQGLLEARIAEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I++ A V+ S ++ G+TV++ G ++ + IVG E++V+ G +S SP+ Sbjct: 68 NRILSEATVVAAPKRS-SKVGIGSTVTVA--IGGSQRVFNIVGAAESNVREGRISNESPV 124 Query: 127 ARALIGKELGDIISVNAPGG 146 ALIG + GD + P G Sbjct: 125 GSALIGHKKGDTVVAEGPTG 144 >gi|114561422|ref|YP_748935.1| transcription elongation factor GreB [Shewanella frigidimarina NCIMB 400] gi|114332715|gb|ABI70097.1| transcription elongation factor GreB [Shewanella frigidimarina NCIMB 400] Length = 161 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E + +E+RP + K ++ A GD SENA+Y K L + R+ L Sbjct: 6 ITLEGYNKLRIEHDYLWKEQRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125 ++ +++ + ++ FGATV +E ++GD K ++IVG +E D + +SI SP Sbjct: 66 RKLLPELKIVYYAPEQEGKVFFGATVE-IENDAGDIKTFKIVGPEEIYDERKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ K++ D V+ P G+KT+ I ++ Sbjct: 125 MARALLKKQVDDEAVVSTPQGDKTWYINKI 154 >gi|166032355|ref|ZP_02235184.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC 27755] gi|166028078|gb|EDR46835.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC 27755] Length = 166 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ + D I TV L ++ + + Y+IV + +GL+SI SP+ Sbjct: 65 ERMLKTANIVSDDSKE-DEIGINNTVDLYFEDDEEVETYRIVTSVRGNSLAGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +A++G ++GD + + P G+ Y ++ Sbjct: 124 GKAVLGHKVGDRVKI--PAGDDGYYVV 148 >gi|56551614|ref|YP_162453.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761261|ref|ZP_04759349.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752794|ref|YP_003225687.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543188|gb|AAV89342.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374168|gb|EER63665.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552157|gb|ACV75103.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 165 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K P +T +G +K+++ ERP+I++ +S A GD SEN +Y ++ Sbjct: 1 MTTKNPNYITPQGLEKLKERYHHLMNTERPKIVEIVSWAAGNGDRSENGDYIYGRKKMRE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + ++ L + A V+D S + ++ FGATV++ +++ +++ +VG+ EAD Sbjct: 61 IDRELSWLSRRLKAARVVDPSAVEDRSKVWFGATVTIADEDD-NQRQVALVGEDEADASQ 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G +S SP+ARAL G LGD+ V P GEK +E++++ Sbjct: 120 GRISWKSPLARALRGAALGDLRIVRLPAGEKEWEVIEI 157 >gi|260549248|ref|ZP_05823468.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. RUH2624] gi|260407654|gb|EEX01127.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. RUH2624] Length = 164 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D + ++ FGA V +E G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYAPEQEGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K++ D + V+ P G+K + I Sbjct: 125 MARALLSKQVDDEVEVHTPLGKKLWYI 151 >gi|294056141|ref|YP_003549799.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis DSM 45221] gi|293615474|gb|ADE55629.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis DSM 45221] Length = 619 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 86/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ FD + E ++ P +AI AR +GDL EN+EY+ A++ Q++ R EL Sbjct: 464 VSQASFDAAKAEYEDLIAKKIPENKEAIVIAREHGDLKENSEYKMARQDQDILLARKNEL 523 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++RA V D S + D + G+ V L E ++G + Y I+G ++D ++ ++S +P+ Sbjct: 524 EVDLSRARVTDFSEATKDNVGIGSVVELKEGSTGKVRRYSILGAWDSDPENDILSYKTPL 583 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK GD ++ G E+T+ IL + Sbjct: 584 AQQLLGKSGGDSVTTKIGGSEETWTILSI 612 >gi|302874691|ref|YP_003843324.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|307690697|ref|ZP_07633143.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302577548|gb|ADL51560.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] Length = 154 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 17/161 (10%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KI +T G K++ EL + + +R I +A+ ARA GDLSENA+Y AAK+ Q++ E R+ Sbjct: 3 KIQLTEAGKQKLEDELNYLKSVKRVEIKEALKVARAQGDLSENADYSAAKDDQSITETRI 62 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--------IVGDQEADV 115 AE+E+I+ AE+I+ ST A V V K S K Y +V EAD Sbjct: 63 AEIESILKYAEIIEAST--------DANVFDVNK-SAKVKFYDFDEIEVVTLVSSVEADA 113 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ +SI SP+ AL E+G +SV +P G E++++L Sbjct: 114 KNMKISIDSPLGMALHRLEVGKKVSVTSPDGSYDVEVIEIL 154 >gi|307544299|ref|YP_003896778.1| transcription elongation factor GreB [Halomonas elongata DSM 2581] gi|307216323|emb|CBV41593.1| transcription elongation factor GreB [Halomonas elongata DSM 2581] Length = 193 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++ L + +RP + + EA A GD SENA+Y K+ N R+ L Sbjct: 39 ITAEGAERLRGILDHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 98 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D DR+ FGA V+L ++N G++ +IVG E D +S+ +P+ Sbjct: 99 TKRLDELQIVDRLPADTDRVFFGAFVTLEDEN-GEELRLRIVGHDETDTGKHWISVDAPL 157 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+GK L D +V APGGE TY I ++ Sbjct: 158 AKALLGKGLDDEATVAAPGGETTYLITEI 186 >gi|123430789|ref|XP_001307960.1| transcription elongation factor [Trichomonas vaginalis G3] gi|121889615|gb|EAX95030.1| transcription elongation factor, putative [Trichomonas vaginalis G3] Length = 150 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 79/137 (57%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A Sbjct: 12 IFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVEERIA 71 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE ++ A++ID ++ D + G++V + E ++ ++ Y IVG EAD G +S S Sbjct: 72 KLEMMVRNAKIIDEKDLNTDVVNIGSSVKVRELDTMEEDEYTIVGSAEADPLEGKISNES 131 Query: 125 PIARALIGKELGDIISV 141 P+ LIG GD++ V Sbjct: 132 PVGSKLIGNRAGDVVEV 148 >gi|13508140|ref|NP_110089.1| transcription elongation factor GreA [Mycoplasma pneumoniae M129] gi|2494921|sp|P78019|GREA_MYCPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1674124|gb|AAB96085.1| transcription elongation factor [Mycoplasma pneumoniae M129] Length = 160 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 4/147 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E Sbjct: 3 LNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIET 62 Query: 62 RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+++I+ ++I+ S T +++ G+TV + + +S + Y IVG EA+ + + Sbjct: 63 RIAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRI 122 Query: 121 SISSPIARALIGK---ELGDIISVNAP 144 S SP+A A+ G+ + D++ + P Sbjct: 123 SNESPLAHAIYGRLVDDECDVVGIEVP 149 >gi|298242601|ref|ZP_06966408.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] gi|297555655|gb|EFH89519.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] Length = 154 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 3/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T+ G + +L + E R ++ + + +A+ GD+ +NA Y AK+ Q L E R+ Sbjct: 6 VFLTNDGLQRALSQLDNLRTEGRAKVAQYLHDAKESGDVIDNAAYDDAKKEQALLESRIL 65 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE+++TRA++I+ D ++ G+ V L + G Y IVG EA +G +S S Sbjct: 66 ELEHLVTRAKLIN--NARTDEVSLGSIVHL-RSSEGRDYCYTIVGAFEASPSAGRISNES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ RAL+G + GD + V+ PGG K Y I ++ Sbjct: 123 PVGRALLGHKAGDHVIVSTPGGVKEYTISRI 153 >gi|301633495|gb|ADK87049.1| transcription elongation factor GreA [Mycoplasma pneumoniae FH] Length = 160 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 4/147 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E Sbjct: 3 LNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIET 62 Query: 62 RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+++I+ ++I+ S T +++ G+TV + + +S + Y IVG EA+ + + Sbjct: 63 RIAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRI 122 Query: 121 SISSPIARALIGK---ELGDIISVNAP 144 S SP+A A+ G+ + D++ + P Sbjct: 123 SNESPLAHAIYGRLVDDECDVVGIEVP 149 >gi|189485414|ref|YP_001956355.1| transcription elongation factor GreA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287373|dbj|BAG13894.1| transcription elongation factor GreA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 158 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 4/155 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNE 60 + +I +T +G K+ +EL Q+ +P I I+ AR +GDL ENAEY AAKE L NL Sbjct: 1 MSEIYLTREGRKKLIKELNELQKR-KPLIQDEIASAREHGDLRENAEYCAAKETLANLIR 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ EL + I A++I+ + D++ G TV++ ++ D + Y IV +EAD + + Sbjct: 60 -RIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKDEYGADYQ-YAIVDLEEADPVANRI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SP+A+ L+G G+ ++V P G+ ++IL++ Sbjct: 118 SIQSPLAQGLLGHTAGETVAVELPAGKTKFKILKI 152 >gi|209965876|ref|YP_002298791.1| transcription elongation factor GreB [Rhodospirillum centenum SW] gi|209959342|gb|ACI99978.1| transcription elongation factor GreB [Rhodospirillum centenum SW] Length = 180 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF ++Q+ELR + ERP++++ ++ A GD SEN +Y K+ + R+ L Sbjct: 25 MTPEGFRRMQEELRSLLRVERPKVVEVVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 84 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV+ + G ++ IVG EAD+ G VS SP Sbjct: 85 SKRLENAEVVDASRQPRRDQVFFGATVTYA-REDGTERTVTIVGIDEADMDQGKVSWISP 143 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ GD++++ P G + E++ + + Sbjct: 144 IARALLKAREGDLVTLRTPQGPEEIEVVAIAY 175 >gi|227508629|ref|ZP_03938678.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191961|gb|EEI72028.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 155 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+ Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ S D + G V+ + + YQIVG E D+ +G +SI+SP Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 I AL+ G+I+++ AP TY++ Sbjct: 124 ICAALLNHHTGEIVTIQAPN--LTYQV 148 >gi|189424976|ref|YP_001952153.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] gi|189421235|gb|ACD95633.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] Length = 157 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G ++Q E + + ERP++++ +S+A A GD SENAEY K+ + ++ +L Sbjct: 5 ITSQGLKRLQDEFEYLWRVERPKVVQGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKQL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E+ + R++FG VS E G+ YQ+ G E DV+ G++SI SP+ Sbjct: 65 GGRLKVLEIAPAPPQNPVRVSFGCWVSY-EDLEGNSYCYQLGGPDEFDVKQGVISIDSPV 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+ +++ D +++ PGG+ I ++ Sbjct: 124 GQALLHRQVDDEVTIRRPGGDLVVYITEI 152 >gi|154484187|ref|ZP_02026635.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC 27560] gi|149734664|gb|EDM50581.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC 27560] Length = 165 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +KI++E+ R+ RP I+A+ EARA GDLSEN EY AAK+ +N NEGR+ Sbjct: 1 MKLTQSDVEKIKEEIEHRKLVVRPEAIEAVKEARAQGDLSENFEYYAAKKDKNKNEGRIR 60 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ A +I + + D + TV + ++ + + ++IV D SG +S S Sbjct: 61 YLERVLKTATIISDES-ADDEVGLNNTVQVYFEDDDETETFKIVSTMRGDSISGRISGDS 119 Query: 125 PIARALIGKELGDIISV 141 P+ AL+G ++GD + V Sbjct: 120 PMGAALMGHKVGDRVEV 136 >gi|326387218|ref|ZP_08208828.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208399|gb|EGD59206.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 161 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D P+T G ++ ERP+I++ +S A GD SEN +Y ++ + Sbjct: 4 DGNPITPAGMAALRARYDHLLGTERPQIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRE 63 Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ L + A VID + +R+ FGATV + +++ +++ +VGD E D GL+ Sbjct: 64 LSHLARRMKAARVIDPVQQQERERVLFGATVEIADEDD-NRRTLTLVGDDEQDAGKGLIG 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +PIARAL G +GD+ V PGGEK +EI+ + Sbjct: 123 WGAPIARALRGARVGDLRRVRLPGGEKEWEIMTI 156 >gi|326789147|ref|YP_004306968.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] gi|326539911|gb|ADZ81770.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] Length = 155 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D +++E+ +R+ R + + + EARA+GDLSEN EY+AAK + NEGR+ L Sbjct: 5 LTQQDIDNMKKEIEYRKVVVRKQRNEEVKEARAHGDLSENYEYKAAKRERGRNEGRIKYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I +T +G+ + G V + Y+IV E D + +SI SP+ Sbjct: 65 ERMIKTATIITDNTEAGE-VGLGKLVDVYFIEDDMNIEYEIVTTMETDAINNKISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 + + K +GDI+++++P GE + I Sbjct: 124 GKMIYKKRVGDIVNIDSPDGEYSVRI 149 >gi|320528944|ref|ZP_08030036.1| transcription elongation factor GreA [Selenomonas artemidis F0399] gi|320138574|gb|EFW30464.1| transcription elongation factor GreA [Selenomonas artemidis F0399] Length = 150 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + EL Sbjct: 2 LTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEIQEL 61 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I +++I G + G+ V++ + + + + IVG EAD G +S SP+ Sbjct: 62 ENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNESPL 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+G+++G +I+V+AP G Y+I+ + Sbjct: 120 GMALLGQKIGKVINVSAPAGMIRYKIVDI 148 >gi|238917160|ref|YP_002930677.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] gi|238872520|gb|ACR72230.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] Length = 166 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R E R + + E RA GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKNDIKKMEEEIEYRIHEVRKAALDDVKETRAQGDLSENFEYHAAKRFKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A VID S+ + D + TV ++ ++ + +IV AD SG++SI SP+ Sbjct: 65 QRTIKNATVIDDSS-ADDEVGVNNTVEVLYEDDESTETIKIVTTIRADSLSGMISIESPL 123 Query: 127 ARALIGKELGD--IISVN 142 +AL+G + GD ++ VN Sbjct: 124 GKALLGHKKGDRVLVQVN 141 >gi|42518266|ref|NP_964196.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|41582550|gb|AAS08162.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] Length = 153 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L+ + +E+I SG I G+ V+L+ + + + Y+IVG EAD+ G Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESG-TIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIDV 152 >gi|302672254|ref|YP_003832214.1| transcription elongation factor GreA/GreB2 [Butyrivibrio proteoclasticus B316] gi|302396727|gb|ADL35632.1| transcription elongation factor GreA/GreB2 [Butyrivibrio proteoclasticus B316] Length = 167 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K + ++ E+ R+ R +++ + EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTRKDIEDMEAEIEHRKVVVRKELLEHVKEARAQGDLSENFEYYAAKKAKNQNESRIRFL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VID +T + D++ +V++ + G ++ Y+IV + GL+S+ SP+ Sbjct: 65 ERMIKTAKVIDDNT-TEDQVGMNKSVTVRIEEDGSEETYKIVTTMRQNSLKGLISVESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 + L+G +GD +++ +YEI Sbjct: 124 GKQLLGHRVGDRVNIKVSDN-YSYEI 148 >gi|326203392|ref|ZP_08193257.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM 2782] gi|325986650|gb|EGD47481.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM 2782] Length = 158 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 88/152 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EGR+ Sbjct: 5 EVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEGRI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S Sbjct: 65 VQLESMLKHARIIDEDEVNTDVVSLGSKVKIYDIEFDEEVEYLIVGSTEANPLKSKISNE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ALIG + + V P G ++IL++ Sbjct: 125 SPVGAALIGHSKDETVEVQVPDGVLKFKILEI 156 >gi|12045138|ref|NP_072949.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|255660457|ref|ZP_05405866.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|1346176|sp|P47524|GREA_MYCGE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1045978|gb|AAC71504.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|166078978|gb|ABY79596.1| transcription elongation factor GreA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 161 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 90/148 (60%), Gaps = 5/148 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K +T +GF ++++EL Q +RP II+ + EAR GDLSENA+Y AAK Q E Sbjct: 3 LNKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIET 62 Query: 62 RMAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+AE+++I+ A++I + +++ G+TV + + +S + Y IVG EA+ + Sbjct: 63 RIAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHK 122 Query: 120 VSISSPIARALIGKELG---DIISVNAP 144 +S SP+A A+ G+ +G D++ + P Sbjct: 123 ISNESPLALAIYGRLIGDECDVVGIEVP 150 >gi|289626983|ref|ZP_06459937.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646809|ref|ZP_06478152.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 2250] gi|330867499|gb|EGH02208.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 157 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDMRVVHYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE GD + VN P EK + + +++ Sbjct: 125 ARALLKKEEGDEVLVNTPEVEKLWFVNSIVY 155 >gi|163792651|ref|ZP_02186628.1| Transcription elongation factor [alpha proteobacterium BAL199] gi|159182356|gb|EDP66865.1| Transcription elongation factor [alpha proteobacterium BAL199] Length = 185 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF ++ ELR ++ ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 32 ITPRGFQAMRDELRQLRRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + + D++ FGATV+ ++ +++ +IVG EAD++ G VS +P Sbjct: 92 LKRLEIAEVVDPAQQKNHDQVFFGATVTYADEQD-NERTVRIVGVDEADLERGEVSWIAP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ + GD++ + P G + E++++ + Sbjct: 151 IARALLKAQEGDVVELRTPAGPQNIEVVRIAY 182 >gi|85374381|ref|YP_458443.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] gi|84787464|gb|ABC63646.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] Length = 159 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G+ ++ ERP I++ +S A GD SEN +Y ++ + +A Sbjct: 7 PITPGGYAALKARYDRLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELAH 66 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VI+ S DR FGAT++L +++ +K +VGD E D +G + SS Sbjct: 67 LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDDA-RKTVTLVGDDEQDASAGKIGWSS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL G +GD+ +V+ P GE+ +E++ + + Sbjct: 126 PLARALRGARVGDLRTVHLPSGEREWEVMAIAY 158 >gi|229524693|ref|ZP_04414098.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis VL426] gi|229338274|gb|EEO03291.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis VL426] Length = 161 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V P G K + I Sbjct: 124 PMARALLKKQVDEEFQVQTPTGIKEWFI 151 >gi|225570871|ref|ZP_03779894.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM 15053] gi|225160333|gb|EEG72952.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM 15053] Length = 185 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 23 LTKSDVQKIKEEIEYRKLVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 82 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ T D + TV L + + + Y++V + G +SI SP+ Sbjct: 83 EKMLKTARIVS-DTSREDEVGINNTVELYFEEDDETEKYRLVTSVRGNSLEGRISIESPL 141 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++G + G+ + V A GG Y +++ + Sbjct: 142 GKAILGHKEGERVKVTANGGSGYYVVIRAI 171 >gi|307295011|ref|ZP_07574853.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] gi|306879485|gb|EFN10703.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] Length = 160 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++ L Sbjct: 8 ITPEGFAKLRAEYDQLLGHERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 67 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+P Sbjct: 68 SRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWSTP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL G +GD+ V P GEK YE++++ + Sbjct: 127 IARALRGAAVGDLRRVILPAGEKEYEVMEIRY 158 >gi|330815852|ref|YP_004359557.1| Transcription elongation factor [Burkholderia gladioli BSR3] gi|327368245|gb|AEA59601.1| Transcription elongation factor [Burkholderia gladioli BSR3] Length = 186 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S S D++ FGATV ++ G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQESADQVFFGATVDYATED-GEDHTITIVGVDEVDLDHGHVSWVSP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ +GD +++ P G + ++L V + Sbjct: 150 IARALLKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|153855392|ref|ZP_01996541.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814] gi|149752212|gb|EDM62143.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814] Length = 167 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+++ T D + TV + ++ + + Y++V + GL+SI SP+ Sbjct: 65 ERMLKNAKIVS-DTSKADEVGINNTVEVYFEDDDETETYRLVTSIRGNSLQGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A+ G ++GD + V G + Y +++ Sbjct: 124 GKAIQGHKVGDRVLVKTNGNDGYYIVIK 151 >gi|291520255|emb|CBK75476.1| Transcription elongation factor [Butyrivibrio fibrisolvens 16/4] Length = 167 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T DKIQ E+ R+ RP++++ + E RA GDLSEN EY AK +N+N+ R+ L Sbjct: 5 LTQGDIDKIQAEIDERKLVLRPKLLEEVKETRAQGDLSENFEYHEAKRAKNMNDSRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AEV+D S+ + D + TV++ ++ Y++V + GL+SI SP+ Sbjct: 65 EKMLKFAEVVDDSS-AEDEVGINNTVTIYIPEDDCEETYKLVTSIRGNSLKGLISIESPL 123 Query: 127 ARALIGKELGD--IISVNAPGGEKTYEI 152 A+ GK +GD ++ VN + +YE+ Sbjct: 124 GAAIRGKHVGDKALVKVN---DDYSYEV 148 >gi|187929352|ref|YP_001899839.1| transcription elongation factor GreB [Ralstonia pickettii 12J] gi|309781794|ref|ZP_07676527.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA] gi|187726242|gb|ACD27407.1| transcription elongation factor GreB [Ralstonia pickettii 12J] gi|308919435|gb|EFP65099.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA] Length = 187 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +AEV+D S D+I FGATV+ + G++K IVG E D+ G VS SP Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEEKTITIVGMDEVDLDIGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI +GD + + P G + +IL+V + Sbjct: 151 IARALIKARVGDTVPLRTPTGVEQIDILEVKY 182 >gi|309775361|ref|ZP_07670366.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 3_1_53] gi|308916878|gb|EFP62613.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 3_1_53] Length = 159 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 93/152 (61%), Gaps = 4/152 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63 Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + +LE +I AE+I D + + I+ G+TV++ + ++ +++ Y IVG EAD +G + Sbjct: 64 IRDLEAMIANAEIISGDKKSTNKKTISLGSTVTIQDLSTNEEETYTIVGSIEADPLNGKL 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S +P+A +L+ ++GD++ + E+ Y++ Sbjct: 124 SNITPLATSLMDHKVGDVVEIEL--AEEPYQV 153 >gi|258620411|ref|ZP_05715449.1| Transcription elongation factor greB [Vibrio mimicus VM573] gi|258626042|ref|ZP_05720898.1| Transcription elongation factor greB [Vibrio mimicus VM603] gi|262170353|ref|ZP_06038031.1| transcription elongation factor GreB [Vibrio mimicus MB-451] gi|262402001|ref|ZP_06078566.1| transcription elongation factor GreB [Vibrio sp. RC586] gi|258581693|gb|EEW06586.1| Transcription elongation factor greB [Vibrio mimicus VM603] gi|258587290|gb|EEW12001.1| Transcription elongation factor greB [Vibrio mimicus VM573] gi|261891429|gb|EEY37415.1| transcription elongation factor GreB [Vibrio mimicus MB-451] gi|262351973|gb|EEZ01104.1| transcription elongation factor GreB [Vibrio sp. RC586] Length = 160 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPTGMKEWFI 151 >gi|227873285|ref|ZP_03991550.1| transcription elongation factor GreA [Oribacterium sinus F0268] gi|227840852|gb|EEJ51217.1| transcription elongation factor GreA [Oribacterium sinus F0268] Length = 161 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +K++ EL + +R I + I EAR GDLSENAEY AAK+ Q E R+ + Sbjct: 9 LTRAGLNKLESELHNLKVNKRQEIAEKIKEAREQGDLSENAEYDAAKDEQREIEERIVAI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+++ AEV+D + I G V L +K ++ Y IVG EA+ G +S SP+ Sbjct: 69 ESLLKNAEVVDDAEEGT--INIGCKVKLFDKEFDEEVEYMIVGSTEANSLQGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+ +GD ++V G Y++L V Sbjct: 127 GMALLRHRVGDEVTVETQAGVLEYKVLSV 155 >gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC 6026] Length = 153 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L+ + +E+I SG I G+ V+L+ + + Y+IVG EAD+ G Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152 >gi|242237779|ref|YP_002985960.1| transcription elongation factor GreB [Dickeya dadantii Ech703] gi|242129836|gb|ACS84138.1| transcription elongation factor GreB [Dickeya dadantii Ech703] Length = 160 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V VE +GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQIVRVVDYSPQQEGKVFFGAWVE-VENEAGDIKRFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ K + + + VN P G + + + ++ Sbjct: 125 ARALLKKTVDEDVVVNTPAGPRVWYVNKI 153 >gi|149911350|ref|ZP_01899970.1| transcription elongation factor GreB [Moritella sp. PE36] gi|149805590|gb|EDM65593.1| transcription elongation factor GreB [Moritella sp. PE36] Length = 161 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ + + L++ ++ERPR+ K +S A + GD S+NA+Y+ K L + + L Sbjct: 7 ITRVGWETLDKRLKFLWKQERPRVTKVVSWAASLGDRSDNADYKENKHLLRTIDREIRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E++D S + FGA L E ++G +IVG E D + V++ SP+ Sbjct: 67 VKRLEVLEIVDYSPQQDGTVYFGAYAEL-EDDNGTVIQCRIVGRDELDSKRNFVTVDSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+ALIGK++ D V+ P G KT+ I Sbjct: 126 AKALIGKQVDDEAIVHTPAGSKTWYI 151 >gi|332533239|ref|ZP_08409106.1| transcription elongation factor GreB [Pseudoalteromonas haloplanktis ANT/505] gi|332037318|gb|EGI73773.1| transcription elongation factor GreB [Pseudoalteromonas haloplanktis ANT/505] Length = 159 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + R+ L Sbjct: 6 VTREGYLQLQQEHDQLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I ++ID S + ++ FGA V +E G+ K ++IVG E + +SI SP+ Sbjct: 66 RKRIPDLKIIDYSPVQDGKVFFGAWVE-IENEEGEVKKFRIVGPDEIYDRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALI K++ D V P G+K + + Sbjct: 125 ARALIKKQVDDEFEVTTPQGKKQWYV 150 >gi|315650384|ref|ZP_07903455.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] gi|315487311|gb|EFU77622.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] Length = 168 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + KI+ E+ R+ RP++I+A+ EARA GDLSEN EY AAK +N NE R+ L Sbjct: 9 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAQGDLSENFEYYAAKREKNKNESRINYL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ V + T + D + G V L ++ + + ++IV D G +SI SPI Sbjct: 69 ERMLKFCHVYEDKT-NDDEVGIGKEVELYFEDDDESEKFKIVTSIRGDSLKGRLSIESPI 127 Query: 127 ARALIGKELGDIISV 141 +A+IG++ GD + V Sbjct: 128 GKAIIGRKKGDRVKV 142 >gi|330827878|ref|YP_004390830.1| transcription elongation factor GreB [Aeromonas veronii B565] gi|328803014|gb|AEB48213.1| transcription elongation factor GreB [Aeromonas veronii B565] Length = 157 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + ++ERP + + ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYNKLKEELDFLWRQERPEVTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D + ++ FGA V VE G+ K ++IVG E + +SI SP+ Sbjct: 66 RKCLEELGIVDYAPAQEGKVFFGAWVE-VENEEGETKRFRIVGYDEIFERKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ KE+GD V P G+ + I ++ Sbjct: 125 ARALLKKEVGDEAIVRTPVGDVCWYINEI 153 >gi|207723815|ref|YP_002254213.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum MolK2] gi|206589020|emb|CAQ35982.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum MolK2] Length = 187 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD +++ P G +IL V + Sbjct: 151 IARALIKAREGDTVALRTPTGVAQIDILAVTY 182 >gi|119897715|ref|YP_932928.1| transcription elongation factor GreB [Azoarcus sp. BH72] gi|119670128|emb|CAL94041.1| putative transcription elongation factor [Azoarcus sp. BH72] Length = 222 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 89/153 (58%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ L Sbjct: 70 MTRRGYDALRTELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 129 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I AEV+D D++ FGATV++ + + D++ +QIVG EA+ G +S SP Sbjct: 130 IKRIESAEVVDPERQENVDQVFFGATVTITDADGEDEQTWQIVGVDEANASEGRISWISP 189 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARAL+ +LG+ + +P G + E++ + ++ Sbjct: 190 LARALLKVKLGETVRFMSPAGPREIEVVDIRYV 222 >gi|218708218|ref|YP_002415839.1| transcription elongation factor GreB [Vibrio splendidus LGP32] gi|218321237|emb|CAV17187.1| Transcription elongation factor greB [Vibrio splendidus LGP32] Length = 160 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D +V P G+K + I Sbjct: 124 PMARALLKKEVDDEFTVTTPEGDKEWFI 151 >gi|332308523|ref|YP_004436374.1| transcription elongation factor GreB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175852|gb|AEE25106.1| transcription elongation factor GreB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 158 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + R+ L Sbjct: 6 ITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ ++++ S ++ FGA V +E + G+ K ++IVG +E D + G +SI S Sbjct: 66 RKLLPELQIVNYSPQQAGKVFFGAWVE-IENDEGETKQFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARALI KE+ D+ SV P G K + I + Sbjct: 124 PMARALIKKEVDDVASVKTPTGYKDWYITSI 154 >gi|299066253|emb|CBJ37437.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum CMR15] Length = 187 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYTRLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I RAEV+D S D+I FGATV+ + GD+ IVG E D+ G VS SP Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQ-GGDETTITIVGMDEVDLDKGQVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD +++ P G ++ +IL V + Sbjct: 151 IARALIKAREGDTVALRTPTGVESIDILAVTY 182 >gi|227511608|ref|ZP_03941657.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227085102|gb|EEI20414.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] Length = 155 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+ Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ S D + G V+ + + YQIVG E D+ +G +SI+SP Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 I AL+ G+I+++ AP TY++ Sbjct: 124 IGAALLNHHTGEIVTIQAPN--LTYQV 148 >gi|325265886|ref|ZP_08132572.1| transcription elongation factor GreB [Kingella denitrificans ATCC 33394] gi|324982524|gb|EGC18150.1| transcription elongation factor GreB [Kingella denitrificans ATCC 33394] Length = 163 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++Q EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 LTPAGHRRLQDELYQLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D T + D++ F ATV+L E+ G ++ +IVG+ E D G +S SP Sbjct: 69 TQRLANACVVDPETREATDQVFFAATVTL-ERGDGSEQVVRIVGEDEIDSAKGKISWKSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARALI GDI+ +N P G +T EIL V Sbjct: 128 LARALIKACDGDIVRLNTPEGTETIEILAV 157 >gi|94497870|ref|ZP_01304436.1| transcription elongation factor [Sphingomonas sp. SKA58] gi|94422759|gb|EAT07794.1| transcription elongation factor [Sphingomonas sp. SKA58] Length = 161 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF K++ + ERP I++ +S A GD SEN +Y ++ +G++ L Sbjct: 9 ITPEGFAKLRADYDHLLGVERPSIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 68 Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D R+ FGATV++ +++ + + +VG+ E DV +G + SP Sbjct: 69 SKKMKDAKVVDPWQQPDKSRVYFGATVTIADEDD-NHRTVTLVGNDETDVDAGRIGWGSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL G +GD+ V P GE+ YE++ + + Sbjct: 128 IARALRGAAVGDLRRVMLPAGEREYEVMAIRY 159 >gi|83748900|ref|ZP_00945911.1| GreB [Ralstonia solanacearum UW551] gi|207743760|ref|YP_002260152.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum IPO1609] gi|300703579|ref|YP_003745181.1| transcription elongation factor (transcript cleavage factor) [Ralstonia solanacearum CFBP2957] gi|83724466|gb|EAP71633.1| GreB [Ralstonia solanacearum UW551] gi|206595159|emb|CAQ62086.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum IPO1609] gi|299071242|emb|CBJ42560.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum CFBP2957] Length = 187 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD +++ P G +IL V + Sbjct: 151 IARALIKAREGDTVALRTPTGVAQIDILAVTY 182 >gi|149189239|ref|ZP_01867526.1| transcription elongation factor GreB [Vibrio shilonii AK1] gi|148836993|gb|EDL53943.1| transcription elongation factor GreB [Vibrio shilonii AK1] Length = 161 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE + E RP + K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQEHDYLWNERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E G+ +++IVG +E D + G +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEEGETMHFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ D + V P G+K + I Sbjct: 124 PMARALLKKQVDDEVVVKTPQGDKEWFI 151 >gi|153212566|ref|ZP_01948313.1| transcription elongation factor GreB [Vibrio cholerae 1587] gi|124116437|gb|EAY35257.1| transcription elongation factor GreB [Vibrio cholerae 1587] Length = 160 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPMGMKEWFI 151 >gi|256851960|ref|ZP_05557347.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260661470|ref|ZP_05862383.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|282931733|ref|ZP_06337221.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|297205169|ref|ZP_06922565.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] gi|256615372|gb|EEU20562.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260547925|gb|EEX23902.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|281304176|gb|EFA96290.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|297149747|gb|EFH30044.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] Length = 153 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 91/147 (61%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G+ I++E+ +++RP IKA+ EAR+ GDLSEN+EY +A KEL++L E R+ Sbjct: 7 MTPQGYKLIEEEI-ANLKKKRPIKIKALQEARSLGDLSENSEYTEAKKELRHL-ESRLRY 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + AE+I + ++ G V L ++ Y+IVG EA++++G +S SP Sbjct: 65 LDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKISFDSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + A++ KE G ++V AP G +YE+ Sbjct: 123 LGAAIMKKEAGTCVTVEAPAG--SYEV 147 >gi|160897466|ref|YP_001563048.1| transcription elongation factor GreB [Delftia acidovorans SPH-1] gi|160363050|gb|ABX34663.1| transcription elongation factor GreB [Delftia acidovorans SPH-1] Length = 188 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF++++ EL ERPRI++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S +G ++I FGATV+ V+ + G+++ I+G EAD VS +P Sbjct: 90 TKRLEIAEVVDPSVHAGSEQIYFGATVTYVD-DEGEERTITIMGIDEADSARQQVSWIAP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++RAL+ +GD +++ P G +T E+L+V + Sbjct: 149 VSRALLKARVGDEVALPTPAGVRTLEVLEVTY 180 >gi|31544396|ref|NP_852974.1| transcription elongation factor greA [Mycoplasma gallisepticum str. R(low)] gi|81420953|sp|Q7NBS1|GREA_MYCGA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|31541240|gb|AAP56542.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. R(low)] gi|284930439|gb|ADC30378.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. R(high)] gi|284931203|gb|ADC31141.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. F] Length = 159 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 2/146 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K+Q ELR +R +IK I EAR GDLSENA+Y +AK Q+ E R+ E+ Sbjct: 9 LTQEGLKKLQAELRLLVDVKRADVIKLIQEAREQGDLSENADYDSAKATQSEIESRITEI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++I+ E+I R+ GA V++ + + Y+IVG E+D +S SP+ Sbjct: 69 QDILNHYEIIKEVDTKNKRVIVGAKVTIHDHSDECNYTYEIVGPIESDPAENKISHESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+A++ K+ G+ S G E Y++ Sbjct: 129 AKAIMDKKEGE--SAEVIGIEHPYKV 152 >gi|317049903|ref|YP_004117551.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] gi|316951520|gb|ADU70995.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] Length = 167 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 4/154 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E E+RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLRAEHDHLWNEKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++D + ++ FGA V VE G+ K ++IVG E +V+ +SI S Sbjct: 66 RKCLAELKIVDYAPQQEGKVFFGAWVE-VENEQGEVKRFRIVGPDEIYGEVKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALI KE+ D ++VN P G+K + + ++ ++ Sbjct: 124 PMARALIKKEVDDEVTVNTPEGQKLWFVNRIEYV 157 >gi|294341373|emb|CAZ89790.1| Transcription elongation factor greB (Transcript cleavage factor greB) [Thiomonas sp. 3As] Length = 188 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 34 LTPQGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 93 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D++ FGATV + + G + IVG E + G +S SP Sbjct: 94 TKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISWISP 152 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ GD +S+ PGG T EIL+V + Sbjct: 153 VARALLKAREGDSVSLPTPGGIATLEILEVTY 184 >gi|187478047|ref|YP_786071.1| transcription elongation factor GreB [Bordetella avium 197N] gi|115422633|emb|CAJ49158.1| transcription elongation factor [Bordetella avium 197N] Length = 187 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 31 MTPEGYARLRDELAHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D+I FGATV K SG+ + IVG EA+ +G +S SP Sbjct: 91 TKRLDIAEVVDASLQPNRDQIFFGATVVYAGK-SGEAQRVSIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD +++ PGG + +IL+V + Sbjct: 150 VARALIKAREGDTVTLRTPGGVEALDILEVHY 181 >gi|77361754|ref|YP_341329.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas haloplanktis TAC125] gi|76876665|emb|CAI87887.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas haloplanktis TAC125] Length = 159 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++QQE +RP I K +S A + GD SENA+YQ K L + R+ L Sbjct: 6 ITREGYLQLQQEHTHLWNVKRPEITKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I ++ID S + ++ FGA V +E G+ K ++IVG E + +SI SP+ Sbjct: 66 RKRIPDLKIIDYSPVQDGKVFFGAWVE-IENEQGETKKFKIVGPDEIYERKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K++ D V P G+K + + Sbjct: 125 ARALLKKQVDDEFDVITPQGKKQWYV 150 >gi|256821719|ref|YP_003145682.1| transcription elongation factor GreB [Kangiella koreensis DSM 16069] gi|256795258|gb|ACV25914.1| transcription elongation factor GreB [Kangiella koreensis DSM 16069] Length = 162 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T+ G +++ EL + + RP + +AI+ A A GD SENAEY K+L+ ++ R+ Sbjct: 7 ITAAGAVRLRNELAYLWKTLRPEVTRAINAAAAEGDRSENAEYIYRKKQLREIDR-RVRY 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ VI+ + D+I FGA VSL ++N G + Y++VG E D + +SI SP Sbjct: 66 LQKRTADLRVIEHTPQEKDKIFFGAQVSLEDEN-GQEIIYRLVGSDEFDHKPHYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ K++ D + + P GEK + I+ + Sbjct: 125 MARALLKKQIDDEVKLRLPDGEKLFWIMGI 154 >gi|153005528|ref|YP_001379853.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5] gi|152029101|gb|ABS26869.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5] Length = 169 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +GF ++ E +RP+I+ + A A GD SENAEY K+L+ L+ R+ Sbjct: 14 ITPEGFRRLASEHERIWSVDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELDR-RLRF 72 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D R FGA V+ +E + G+ + +++VG E DV +GL+S+ +P Sbjct: 73 LSERMDALTVVDPRPHPHGRAFFGAWVT-IEDDEGEARTFRLVGPDEFDVAAGLISVEAP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK+ GD + P GE I+ V W Sbjct: 132 LGRALLGKQEGDTVLFLRPAGEAELTIMAVRW 163 >gi|71906765|ref|YP_284352.1| transcription elongation factor GreB [Dechloromonas aromatica RCB] gi|71846386|gb|AAZ45882.1| transcription elongation factor GreB [Dechloromonas aromatica RCB] Length = 185 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D+++ EL + ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHDRLKSELEHLVKRERPHVVEIVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEVID + D+I FGATV++ N G Y IVG E DV G +S SP Sbjct: 91 TKRLDVAEVIDPLRQGDNDQIFFGATVTIAGIN-GVANTYTIVGVDETDVSRGRISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD I +P G + +IL+V++ Sbjct: 150 LARALIKSREGDSIRFQSPLGVREIDILEVVY 181 >gi|160895078|ref|ZP_02075852.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50] gi|156863509|gb|EDO56940.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50] Length = 160 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 84/149 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 8 VTYTGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ EV+D + + + G TV++ + ++ + IVG EAD+ +S SP+ Sbjct: 68 EAILKNVEVVDEDEVDTEVVGIGRTVTVYDYEFDEEVVFHIVGSTEADIMKNKISDESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL G +G+ + V AP GE Y IL + Sbjct: 128 GMALKGARVGEEVIVEAPDGEFKYRILDI 156 >gi|15642709|ref|NP_232342.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586617|ref|ZP_01676402.1| transcription elongation factor GreB [Vibrio cholerae 2740-80] gi|121726717|ref|ZP_01679942.1| transcription elongation factor GreB [Vibrio cholerae V52] gi|147675721|ref|YP_001218203.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|153817456|ref|ZP_01970123.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457] gi|153821253|ref|ZP_01973920.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|227082829|ref|YP_002811380.1| transcription elongation factor GreB [Vibrio cholerae M66-2] gi|229507237|ref|ZP_04396742.1| transcription elongation factor GreB [Vibrio cholerae BX 330286] gi|229509842|ref|ZP_04399323.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|229516963|ref|ZP_04406409.1| transcription elongation factor GreB [Vibrio cholerae RC9] gi|229606743|ref|YP_002877391.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236] gi|254851252|ref|ZP_05240602.1| transcription elongation factor GreB [Vibrio cholerae MO10] gi|255744327|ref|ZP_05418279.1| transcription elongation factor GreB [Vibrio cholera CIRS 101] gi|262158563|ref|ZP_06029678.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1] gi|262170043|ref|ZP_06037732.1| transcription elongation factor GreB [Vibrio cholerae RC27] gi|298500470|ref|ZP_07010274.1| transcription elongation factor GreB [Vibrio cholerae MAK 757] gi|25453013|sp|Q9KNL7|GREB_VIBCH RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|9657312|gb|AAF95855.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549176|gb|EAX59209.1| transcription elongation factor GreB [Vibrio cholerae 2740-80] gi|121630878|gb|EAX63260.1| transcription elongation factor GreB [Vibrio cholerae V52] gi|126512042|gb|EAZ74636.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457] gi|126521185|gb|EAZ78408.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|146317604|gb|ABQ22143.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|227010717|gb|ACP06929.1| transcription elongation factor GreB [Vibrio cholerae M66-2] gi|227014601|gb|ACP10811.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|229346026|gb|EEO10998.1| transcription elongation factor GreB [Vibrio cholerae RC9] gi|229353316|gb|EEO18255.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|229354742|gb|EEO19663.1| transcription elongation factor GreB [Vibrio cholerae BX 330286] gi|229369398|gb|ACQ59821.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236] gi|254846957|gb|EET25371.1| transcription elongation factor GreB [Vibrio cholerae MO10] gi|255737852|gb|EET93245.1| transcription elongation factor GreB [Vibrio cholera CIRS 101] gi|262021451|gb|EEY40163.1| transcription elongation factor GreB [Vibrio cholerae RC27] gi|262029724|gb|EEY48373.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1] gi|297540639|gb|EFH76696.1| transcription elongation factor GreB [Vibrio cholerae MAK 757] Length = 161 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V+ P G K + I Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151 >gi|256844340|ref|ZP_05549826.1| transcription elongation factor GreA [Lactobacillus crispatus 125-2-CHN] gi|262047271|ref|ZP_06020229.1| transcription elongation factor GreA [Lactobacillus crispatus MV-3A-US] gi|295692071|ref|YP_003600681.1| transcription elongation factor [Lactobacillus crispatus ST1] gi|256613418|gb|EEU18621.1| transcription elongation factor GreA [Lactobacillus crispatus 125-2-CHN] gi|260572516|gb|EEX29078.1| transcription elongation factor GreA [Lactobacillus crispatus MV-3A-US] gi|295030177|emb|CBL49656.1| Transcription elongation factor [Lactobacillus crispatus ST1] Length = 153 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ Sbjct: 66 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G +V AP GE I++V Sbjct: 124 GQAIMKKEAGTTATVAAPAGEYQVTIVEV 152 >gi|227523817|ref|ZP_03953866.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227089018|gb|EEI24330.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] Length = 155 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+ Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ S D + G V+ + + YQIVG E D+ G +SI+SP Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDDGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 I AL+ G+I+++ AP TY++ Sbjct: 124 IGAALLNHHTGEIVTIQAPN--LTYQV 148 >gi|187933763|ref|YP_001884424.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] gi|238691601|sp|B2TI25|GREA_CLOBB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|187721916|gb|ACD23137.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] Length = 160 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 88/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG++ +L Sbjct: 9 MTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGKILQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S SP+ Sbjct: 69 ENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISNESPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK++GD++ V P G +EIL + Sbjct: 129 GNALVGKKIGDVVEVVVPDGVSKFEILDI 157 >gi|331003037|ref|ZP_08326549.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413081|gb|EGG92456.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon 107 str. F0167] Length = 164 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 3/144 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + KI+ E+ R+ RP++I+A+ EARA+GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAHGDLSENFEYYAAKREKNKNESRINYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ V + T D++ V L + + + ++IV D G +SI SPI Sbjct: 65 ERMLRFCNVYEDKT-EDDQVGIDKVVELYFEEDDESEKFKIVTSIRGDSLEGRLSIESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTY 150 +A++GK+ GD V P G+ Y Sbjct: 124 GKAIVGKKKGD--RVRVPVGDGGY 145 >gi|253795713|ref|YP_003038809.1| putative transcription elongation factor GreA [Candidatus Hodgkinia cicadicola Dsem] gi|253740021|gb|ACT34356.1| putative transcription elongation factor GreA [Candidatus Hodgkinia cicadicola Dsem] Length = 155 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ + +L WR+Q ++P + + AR+ GDLSENA+YQAA+ LNE R+ E+ Sbjct: 6 LTALGYISLVAQLNWRRQHKKPALKAQLKAARSLGDLSENADYQAARREDKLNEARINEI 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + RA++ + + +R ++ +TV L ++ G + IVGD EA V +SS + Sbjct: 66 LQTLARAKLAPARS-AANRPSYNSTVVL-KRADGKLLAFNIVGDDEAIATEANVGLSSDV 123 Query: 127 ARALIGKELGDIISV 141 AR + K++GD++ V Sbjct: 124 ARQCLNKKVGDVVVV 138 >gi|17546871|ref|NP_520273.1| transcription elongation factor GreB [Ralstonia solanacearum GMI1000] gi|17429171|emb|CAD15859.1| probable transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum GMI1000] Length = 187 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGQVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD +++ P G + +IL V + Sbjct: 151 IARALIKAREGDTVALRTPTGVEPIDILAVTY 182 >gi|294013274|ref|YP_003546734.1| transcription elongation factor GreB [Sphingobium japonicum UT26S] gi|292676604|dbj|BAI98122.1| transcription elongation factor GreB [Sphingobium japonicum UT26S] Length = 161 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++ L Sbjct: 9 ITPEGFAKLRAEYDQLLGVERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 68 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+P Sbjct: 69 SRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWSTP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL G +GD+ V P GEK YE++++ + Sbjct: 128 IARALRGAAVGDLRRVMLPAGEKEYEVMEIRY 159 >gi|109896438|ref|YP_659693.1| transcription elongation factor GreB [Pseudoalteromonas atlantica T6c] gi|109698719|gb|ABG38639.1| transcription elongation factor GreB [Pseudoalteromonas atlantica T6c] Length = 158 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + R+ L Sbjct: 6 ITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ ++++ S ++ FGA V +E + G+ K ++IVG +E D + G +SI S Sbjct: 66 RKLLPELQIVNYSPQQAGKVFFGAWVE-IENDEGETKQFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARALI KE+ D+ SV P G K + + + Sbjct: 124 PMARALIKKEVDDVASVKTPTGYKDWYVTSI 154 >gi|323693914|ref|ZP_08108101.1| transcription elongation factor [Clostridium symbiosum WAL-14673] gi|323502011|gb|EGB17886.1| transcription elongation factor [Clostridium symbiosum WAL-14673] Length = 169 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 7 LTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 66 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 EN+I A V +S SG D + TV+L ++ +++ Y++V + GL+SI SP Sbjct: 67 ENMIKNARV--VSDKSGSDEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLISIESP 124 Query: 126 IARALIGKELGDIISV 141 + +A+ G + GD + V Sbjct: 125 LGKAVRGHKEGDSVYV 140 >gi|297581551|ref|ZP_06943474.1| transcription elongation factor GreB [Vibrio cholerae RC385] gi|297534389|gb|EFH73227.1| transcription elongation factor GreB [Vibrio cholerae RC385] Length = 160 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + V P G K + I Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151 >gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] Length = 165 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 5/139 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+ Sbjct: 18 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAP 144 + +AL+ K G ++V AP Sbjct: 134 LGQALLHKTAGTTVTVEAP 152 >gi|92114676|ref|YP_574604.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] gi|91797766|gb|ABE59905.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ +++ + +RP + + EA A GD SENA+Y K+ N R+ L Sbjct: 25 ITARGYARLKGIHEHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 84 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D R+ FGA V+L E + G++ +IVG E D +S+ +P+ Sbjct: 85 GKRLDELQVVDRLPADTSRVYFGAYVTL-EDDDGEEMTIRIVGHDETDTDKRWISVDAPL 143 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+A++GK L + ++VNAPGG+ TY I + + Sbjct: 144 AQAMLGKGLDEDVTVNAPGGDTTYIITDIAY 174 >gi|323486296|ref|ZP_08091622.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323400406|gb|EGA92778.1| transcription elongation factor [Clostridium symbiosum WAL-14163] Length = 178 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 16 LTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 75 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 EN+I A V +S SG D + TV+L ++ +++ Y++V + GL+SI SP Sbjct: 76 ENMIKNARV--VSDKSGSDEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLISIESP 133 Query: 126 IARALIGKELGDIISV 141 + +A+ G + GD + V Sbjct: 134 LGKAVRGHKEGDSVYV 149 >gi|104781028|ref|YP_607526.1| transcription elongation factor GreB [Pseudomonas entomophila L48] gi|95110015|emb|CAK14720.1| transcription elongation factor and transcript cleavage [Pseudomonas entomophila L48] Length = 157 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + GD+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVSYSPQQEGKVFFGAWVE-IENDEGDQLKFRIVGYDEIHGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150 >gi|78484860|ref|YP_390785.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] gi|78363146|gb|ABB41111.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] Length = 154 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF ++ +EL + + +RP I++AIS A A GD SENAEY K+ + ++ L Sbjct: 4 ITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRKKELRETDRKIRYL 63 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + V+ D++ FGA V L+E G +K Y+IVG EA + +S+ SP+ Sbjct: 64 ERHLKDINVVRDKPRQRDKVFFGAYV-LLEDEDGQQKQYRIVGGIEARGEENEISVKSPV 122 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 A+ALIGK L + V P K Y IL + + Sbjct: 123 AQALIGKLLDQDVEVLLPDNRKIHYTILDIKY 154 >gi|319779409|ref|YP_004130322.1| Transcription elongation factor GreB [Taylorella equigenitalis MCE9] gi|317109433|gb|ADU92179.1| Transcription elongation factor GreB [Taylorella equigenitalis MCE9] Length = 182 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++ +++EL ERP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 30 MTVTGYNSLRKELSDLVTVERPEVVQVVSWAASNGDRSENGDYIYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEVID S DR+ FGATV+ + N+ D+ IVG EAD +G +S SP Sbjct: 90 TKRLEIAEVIDPSQQPNKDRVYFGATVTYLNPNN-DEVTVTIVGIDEADPLNGKISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ALI E G I+++ P G++ E+L++++ Sbjct: 149 VAKALIKSEEGQIVTLKTPNGKQEIEVLEIVY 180 >gi|164686645|ref|ZP_02210673.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM 16795] gi|164604374|gb|EDQ97839.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM 16795] Length = 158 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 89/149 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + + +R + + + A ++GDLSENAEY AK Q E ++ +L Sbjct: 8 LTQEGYNKLEEELEYLKAVKRKEVAERLKVAISFGDLSENAEYDEAKNEQAKLEEQILKL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A +ID S + + + G+ V + + + ++ Y IVG EAD G +S SP+ Sbjct: 68 DEKLRKAVIIDESQIDLNIVTVGSIVKVFDFDFDEEVEYVIVGSAEADPFEGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+G +G+ + V P G +++L++ Sbjct: 128 GKALLGARVGETVEVQVPDGVSKFKVLEI 156 >gi|253699374|ref|YP_003020563.1| GreA/GreB family elongation factor [Geobacter sp. M21] gi|251774224|gb|ACT16805.1| GreA/GreB family elongation factor [Geobacter sp. M21] Length = 158 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 93/152 (61%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 ++++G ++Q+ + + ERPR++K +++A A GD SENAEY + K L+ ++ E Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 61 Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++ R +V+ + ++ ++FG V+ E G+++ YQ+VG E DV +G +S+ Sbjct: 62 LRHLGDRLKVVKVVYPPLNPSTVSFGCWVTY-EDEEGEERCYQLVGPDEFDVTAGKISVD 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+G+++ D I++ P G+ I+ + Sbjct: 121 SPVGKALLGRKVDDEITIKRPAGDLAVTIVAI 152 >gi|297625161|ref|YP_003706595.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] gi|297166341|gb|ADI16052.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] Length = 158 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 3/154 (1%) Query: 4 KIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K PV T +G++KI++ELR+ + +R +I + + A A GDL E+A Y A+ Q+ NE Sbjct: 3 KKPVYLTPQGYEKIKEELRYLVEVKRQQIAENMGTAIADGDLRESAAYDEARMEQSANEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE I+ RA V++ GA+++L E SG + + +VG EAD+ +S Sbjct: 63 RIADLEEILHRAVVVENQEGELAVARLGASLTL-EDESGQQTTFYLVGTHEADIFENRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ R L+GK +GD +++ Y +++V Sbjct: 122 DESPLGRELLGKRVGDKVNLALGRTRSEYTVVEV 155 >gi|255282088|ref|ZP_05346643.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] gi|255267407|gb|EET60612.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] Length = 191 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T KI++E+ +R+ R I A+ EARA GDLSEN EY AAK +N NE R+ Sbjct: 28 TLTRSDVRKIEEEIEYRKLVVRKEAIAAVKEARAQGDLSENFEYYAAKRDKNKNESRIRY 87 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A V+ + G+ + TV + ++ + + Y+IV + SG +SI SP Sbjct: 88 LERMLKTARVVSDVSRDGE-VGLNNTVEVYFEDDDETETYKIVTSIRGNSMSGKISIESP 146 Query: 126 IARALIGKELGD--IISVNAPGG 146 + RAL+GK+ GD + VN G Sbjct: 147 MGRALLGKKAGDRVYVKVNENAG 169 >gi|322421115|ref|YP_004200338.1| GreA/GreB family elongation factor [Geobacter sp. M18] gi|320127502|gb|ADW15062.1| GreA/GreB family elongation factor [Geobacter sp. M18] Length = 157 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 92/152 (60%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 ++++G ++Q+ + ++ERPR++K +++A A GD SENAEY + K L+ ++ E Sbjct: 5 ISAEGRKRLQERYDFLWEKERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 60 Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++ R +V+ + ++ ++FG V+ E G ++ YQ+VG E DV G +S+ Sbjct: 61 LRHLGDRLKVLKVVYPPLNPASVSFGCWVTY-EDEEGGERCYQLVGPDEFDVSLGKISVD 119 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL+GK++ D +++ P G+ IL V Sbjct: 120 SPVGKALLGKKVDDEVTIRRPAGDLAVTILAV 151 >gi|194366636|ref|YP_002029246.1| transcription elongation factor GreB [Stenotrophomonas maltophilia R551-3] gi|194349440|gb|ACF52563.1| transcription elongation factor GreB [Stenotrophomonas maltophilia R551-3] Length = 168 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+ Sbjct: 15 ITASGHARLKAELDELWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA V L +SG Y+IVG E D G +SI S Sbjct: 73 YLTKRLESLRVVDTTPTDPQAVFFGAWVELENVDSGQTSRYRIVGPDETDAGLGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K L D SV P G T+ ++ V Sbjct: 133 PLARALLKKRLDDEFSVELPSGPHTFAVIGV 163 >gi|283769390|ref|ZP_06342289.1| putative transcription elongation factor GreA [Bulleidia extructa W1219] gi|283104047|gb|EFC05431.1| putative transcription elongation factor GreA [Bulleidia extructa W1219] Length = 157 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI VT +G K+Q E R ++ ++EARA GDLSENA+Y AA+E+Q E R Sbjct: 4 NKIYVTQEGLKKLQDEYNHLVHVVREQVKTELAEARAQGDLSENADYDAAREMQAQVEAR 63 Query: 63 MAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AELE N+ + T + GATV L ++ + Y IVG EAD +G +S Sbjct: 64 IAELEINLQNYVLIDTTKTKDSTTVRIGATVQLEFLDTKEVNEYMIVGSTEADPLNGKLS 123 Query: 122 ISSPIARALIGKELGDIISVN 142 +P+A+A++ ++GD + VN Sbjct: 124 NETPLAQAILEHKVGDTVFVN 144 >gi|86146554|ref|ZP_01064876.1| transcription elongation factor GreB [Vibrio sp. MED222] gi|85835611|gb|EAQ53747.1| transcription elongation factor GreB [Vibrio sp. MED222] Length = 160 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE D +V P G+K + I Sbjct: 124 PMARALLKKETDDEFTVTTPEGDKEWFI 151 >gi|217969791|ref|YP_002355025.1| transcription elongation factor GreB [Thauera sp. MZ1T] gi|217507118|gb|ACK54129.1| transcription elongation factor GreB [Thauera sp. MZ1T] Length = 184 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 1/147 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ L Sbjct: 32 MTRRGYDALRVELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I AEV+D G +++ FGATVS + ++ +++ QIVG EAD G +S SP Sbjct: 92 IKRIESAEVVDPERQQGLEQVFFGATVSFSDLDTAEEQTLQIVGVDEADASQGRISWISP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARA++ +GD++ ++P G + EI Sbjct: 152 LARAVLKARVGDVVRFHSPAGVREIEI 178 >gi|239625679|ref|ZP_04668710.1| GreA/GreB family elongation factor [Clostridiales bacterium 1_7_47_FAA] gi|239519909|gb|EEQ59775.1| GreA/GreB family elongation factor [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 3/137 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTKSDIEKMQEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E +I A + IS S D + G TV + + + + Y++V + GL+SI SP Sbjct: 65 EKMIKTARI--ISDESKDNEVGLGDTVEIYIPDDDETERYKLVTTVRGNSLQGLISIDSP 122 Query: 126 IARALIGKELGDIISVN 142 + +A+ ++GD + VN Sbjct: 123 LGKAIRRHKVGDRVHVN 139 >gi|300690932|ref|YP_003751927.1| transcription elongation factor (transcript cleavage factor) [Ralstonia solanacearum PSI07] gi|299077992|emb|CBJ50633.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum PSI07] Length = 187 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +AEV+D S D+I FGATV+ ++ GD+ IVG E D++ G VS SP Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLEKGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD +++ P G + +IL V + Sbjct: 151 IARALIKAREGDTVALRTPTGVEQIDILAVTY 182 >gi|225377148|ref|ZP_03754369.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM 16841] gi|225211053|gb|EEG93407.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM 16841] Length = 167 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKNALEAVKEARAHGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A++I + + D + TV++ ++ +++ Y+IV + L+S SP+ Sbjct: 65 EKMIRTAKIISTDS-ADDEVGMNNTVTVYFEDDDEEETYKIVTTIRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISV 141 +AL+G ++GD V Sbjct: 124 GKALLGHKIGDRCEV 138 >gi|163857070|ref|YP_001631368.1| transcription elongation factor GreB [Bordetella petrii DSM 12804] gi|163260798|emb|CAP43100.1| greB [Bordetella petrii] Length = 185 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 31 MTPAGYARLRDELAHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + D++ FGATV+ ++K GD IVG EA+ +G +S SP Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATVTYLDK-GGDTHEVTIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD + + PGG + +IL+V + Sbjct: 150 VARALIKAREGDTVVLRTPGGVEELDILEVRY 181 >gi|114331547|ref|YP_747769.1| transcription elongation factor GreB [Nitrosomonas eutropha C91] gi|114308561|gb|ABI59804.1| transcription elongation factor GreB [Nitrosomonas eutropha C91] Length = 182 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 29 ITPGGYQRLKDEFDQLWKVERPELVKIVSWAASNGDRSENGDYIYGKRRLREIDRRLRFL 88 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE+ID + D++ FGATV++ + G ++ Y IVG EA+ G +S SP Sbjct: 89 SRRMDHAEIIDPAQRGECDQVFFGATVTVYDAQ-GKEQTYSIVGMDEAEPSCGRISWISP 147 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ GD++S+ PGG + E++++ + Sbjct: 148 LARALLKAREGDVVSLQTPGGLEELEVIKIRY 179 >gi|225573152|ref|ZP_03781907.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM 10507] gi|225039481|gb|EEG49727.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +KI++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDVEKIKEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ +E++ + D + TV L + + + +++V + GL+S SP+ Sbjct: 65 ERMLKTSEIVSDES-KDDEVGLFNTVELYFEEDDETEKFKVVTSVRGNSLKGLISTESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++GK+ GD + + Y +++ Sbjct: 124 GKAIMGKKTGDRVEIKVSDSYSYYVVIK 151 >gi|307132913|ref|YP_003884929.1| transcription elongation factor GreB [Dickeya dadantii 3937] gi|306530442|gb|ADN00373.1| Transcription elongation factor GreB [Dickeya dadantii 3937] Length = 166 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V VE GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVE-VENEDGDVKRFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ K + + VN P G K + + ++ Sbjct: 125 ARALLKKAVDEEAVVNTPTGPKVWYVNKI 153 >gi|148976494|ref|ZP_01813190.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3] gi|145964070|gb|EDK29327.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3] Length = 160 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ E E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNRLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D +V P G+K + I Sbjct: 124 PMARALLKKEVDDEFTVKTPEGDKEWFI 151 >gi|28896926|ref|NP_796531.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD 2210633] gi|153837875|ref|ZP_01990542.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ3810] gi|260365887|ref|ZP_05778381.1| transcription elongation factor GreB [Vibrio parahaemolyticus K5030] gi|260877826|ref|ZP_05890181.1| transcription elongation factor GreB [Vibrio parahaemolyticus AN-5034] gi|260895525|ref|ZP_05904021.1| transcription elongation factor GreB [Vibrio parahaemolyticus Peru-466] gi|260902549|ref|ZP_05910944.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ4037] gi|31076677|sp|Q87TB8|GREB_VIBPA RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|28805134|dbj|BAC58415.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD 2210633] gi|149748738|gb|EDM59583.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ3810] gi|308088536|gb|EFO38231.1| transcription elongation factor GreB [Vibrio parahaemolyticus Peru-466] gi|308089794|gb|EFO39489.1| transcription elongation factor GreB [Vibrio parahaemolyticus AN-5034] gi|308109683|gb|EFO47223.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ4037] gi|308113424|gb|EFO50964.1| transcription elongation factor GreB [Vibrio parahaemolyticus K5030] gi|328471701|gb|EGF42578.1| transcription elongation factor GreB [Vibrio parahaemolyticus 10329] Length = 163 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E +GD K ++IVG +E D + +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARA++ K++ + +V P G+K + I Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGDKEWFI 151 >gi|291460291|ref|ZP_06599681.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417046|gb|EFE90765.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] Length = 162 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +K + EL + R I I EAR GDLSENAEY AAK+ Q E R+ +L Sbjct: 9 LTRAGLNKYEAELHDLKVNRRQEIAGKIKEAREQGDLSENAEYDAAKDEQREIEERIVQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AEV+D T G I G V L++K ++ Y IVG EA+ G +S SP+ Sbjct: 69 ELLLKNAEVVD-DTEEGS-INIGCHVKLLDKEFDEEVEYTIVGSTEANSLQGKISNESPV 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+ GD + V G + +L V Sbjct: 127 GKALLHHREGDTVEVETQNGVLQFTVLSV 155 >gi|33592252|ref|NP_879896.1| transcription elongation factor GreB [Bordetella pertussis Tohama I] gi|33595908|ref|NP_883551.1| transcription elongation factor GreB [Bordetella parapertussis 12822] gi|33601290|ref|NP_888850.1| transcription elongation factor GreB [Bordetella bronchiseptica RB50] gi|33565987|emb|CAE36540.1| transcription elongation factor [Bordetella parapertussis] gi|33571897|emb|CAE41415.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33575726|emb|CAE32803.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|332381670|gb|AEE66517.1| transcription elongation factor GreB [Bordetella pertussis CS] Length = 184 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 31 MTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + D++ FGATV +++ +G+++ IVG EA+ +G +S SP Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATVLYMDR-AGEERTVTIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL GD +++ PGG + EIL+V + Sbjct: 150 VARALTKAHEGDTVTLRTPGGVEELEILEVRY 181 >gi|227871734|ref|ZP_03990142.1| possible transcription elongation factor [Oribacterium sinus F0268] gi|227842422|gb|EEJ52644.1| possible transcription elongation factor [Oribacterium sinus F0268] Length = 167 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + KI+ E++ R+ E RP++I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTREDVRKIEAEIQKRKLEIRPKLIEAVKEARAQGDLSENFEYYAAKKEKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+VI + G + TV + +++ Y++V G +S SP+ Sbjct: 65 ERVLKFAKVISTKSEEGV-VGINDTVVVYFPEDKEEECYRLVTSIRGQSLEGRISNQSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+GK +G+ + V GG +Y +L Sbjct: 124 GKALMGKRVGEEVEVFLEGG-SSYTVL 149 >gi|325928883|ref|ZP_08190046.1| transcription elongation factor GreB [Xanthomonas perforans 91-118] gi|325540744|gb|EGD12323.1| transcription elongation factor GreB [Xanthomonas perforans 91-118] Length = 198 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 45 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 102 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 103 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 162 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARAL+ K + D + P G+ T+ ++ V ++ Sbjct: 163 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 196 >gi|289168331|ref|YP_003446600.1| transcription elongation factor related to GreA [Streptococcus mitis B6] gi|288907898|emb|CBJ22738.1| transcription elongation factor related to GreA [Streptococcus mitis B6] Length = 150 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 71/107 (66%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D + Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 A G TV++ E +++ Y IVG AD +G VS SPI +AL+ + Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALLAR 134 >gi|262392646|ref|YP_003284500.1| transcription elongation factor GreB [Vibrio sp. Ex25] gi|262336240|gb|ACY50035.1| transcription elongation factor GreB [Vibrio sp. Ex25] Length = 163 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARA++ K++ + +V P GEK + I Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGEKEWFI 151 >gi|330826535|ref|YP_004389838.1| transcription elongation factor GreB [Alicycliphilus denitrificans K601] gi|329311907|gb|AEB86322.1| transcription elongation factor GreB [Alicycliphilus denitrificans K601] Length = 188 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 6/154 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123 + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +GL IS Sbjct: 90 TKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEAD--NGLQQISWI 146 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ P G +T EIL V + Sbjct: 147 SPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180 >gi|311107031|ref|YP_003979884.1| transcription elongation factor GreB [Achromobacter xylosoxidans A8] gi|310761720|gb|ADP17169.1| transcription elongation factor GreB [Achromobacter xylosoxidans A8] Length = 183 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 31 MTPGGYERLRSELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + D++ FGATV L +G++ N IVG EA+ +G +S SP Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATV-LYSDKAGEEHNVTIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI + GD + + PGG + +IL V + Sbjct: 150 VARALIKAKEGDTVVLRTPGGIEELDILDVSY 181 >gi|255671638|gb|ACU26399.1| transcription elongation factor [uncultured bacterium HF186_25m_30B18] gi|255671676|gb|ACU26436.1| transcription elongation factor [uncultured bacterium HF186_75m_14K15] gi|255671727|gb|ACU26485.1| transcription elongation factor [uncultured bacterium HF186_25m_13D19] Length = 163 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF++++ E ERP I+ ++ A A GD SENAEY K+ + R+ L Sbjct: 8 ITPRGFNRLRAEHDQLWFVERPHIVDEVARAAAMGDRSENAEYIYGKKRLREIDRRLRWL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E++D + G+RI FGATV+L + G +K +VG E +V +S SP+ Sbjct: 68 NKRLDMTEIVDPAIDRGERIFFGATVTLGYMD-GTEKQVALVGVDEIEVDKQRISWRSPL 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 R LIGK GD +++N G EIL+V ++ Sbjct: 127 GRLLIGKSEGDEVTLNHAGEVTPIEILEVAYL 158 >gi|168183357|ref|ZP_02618021.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|237793993|ref|YP_002861545.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|182673543|gb|EDT85504.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|229261106|gb|ACQ52139.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] Length = 154 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 4/152 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVSISS 124 +I+ A VID + D+ G K D + N +V +AD ++ L+S+ S Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDADPENMLISVES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+GK++GDI V+APG + T E+L+++ Sbjct: 123 DLGKALMGKKVGDIAEVDAPGEKYTVEVLEII 154 >gi|319761755|ref|YP_004125692.1| transcription elongation factor greb [Alicycliphilus denitrificans BC] gi|317116316|gb|ADU98804.1| transcription elongation factor GreB [Alicycliphilus denitrificans BC] Length = 188 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 6/154 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123 + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +GL IS Sbjct: 90 TKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEAD--NGLQQISWI 146 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ P G +T EIL V + Sbjct: 147 SPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180 >gi|91224988|ref|ZP_01260247.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01] gi|269965882|ref|ZP_06179975.1| Transcription elongation factor greB [Vibrio alginolyticus 40B] gi|91190234|gb|EAS76504.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01] gi|269829435|gb|EEZ83676.1| Transcription elongation factor greB [Vibrio alginolyticus 40B] Length = 163 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARA++ K++ + +V P GEK + I Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGEKEWFI 151 >gi|256849256|ref|ZP_05554689.1| transcription elongation factor GreA [Lactobacillus crispatus MV-1A-US] gi|312978351|ref|ZP_07790093.1| transcription elongation factor GreA 1 (Transcript cleavage factorgreA 1) [Lactobacillus crispatus CTV-05] gi|256714032|gb|EEU29020.1| transcription elongation factor GreA [Lactobacillus crispatus MV-1A-US] gi|310894694|gb|EFQ43766.1| transcription elongation factor GreA 1 (Transcript cleavage factorgreA 1) [Lactobacillus crispatus CTV-05] Length = 153 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 7 MTPEGYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ Sbjct: 66 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G +V AP GE I++V Sbjct: 124 GQAIMKKEAGTTATVAAPVGEYQVTIVEV 152 >gi|292670844|ref|ZP_06604270.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541] gi|292647465|gb|EFF65437.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541] Length = 156 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + Sbjct: 5 KVMLTEDGYNKLVEKLDYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE I +++I G + G+ V + + +++ + IVG EAD G +S Sbjct: 65 QELETKIRNSDII--KAGDGKSVTMGSRVKVKDLEFDEEETFLIVGSTEADPDEGKISNE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+G+++ +I VNAP G Y+I+ + Sbjct: 123 SPLGMALLGQKINRVIKVNAPAGIIQYKIIDI 154 >gi|84386352|ref|ZP_00989380.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378776|gb|EAP95631.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 165 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ISREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++D S ++ FGA V +E +GD K ++IVG +E D + G +SI S Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENQAGDVKKFRIVGPEEIYGDAK-GYISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ KE+ D V P G K + I Sbjct: 124 PMARALLKKEVDDEFEVKTPDGVKEWYI 151 >gi|218282252|ref|ZP_03488551.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989] gi|218216790|gb|EEC90328.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989] Length = 162 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 5/144 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G++ + E + R +I + EARA GDLSENA+Y AA+E Q EGR Sbjct: 4 EKFYVTQEGYNDLVNEHENLVHKVRQEVIVELQEARAQGDLSENADYDAAREHQAQVEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDR-----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + ELE +I AE+I S D+ + G+TV +++ + + + IVG EAD + Sbjct: 64 IRELEAMIKNAEIITESADVEDKKKKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFN 123 Query: 118 GLVSISSPIARALIGKELGDIISV 141 G +S ++P+A ++ ++GD+ +V Sbjct: 124 GKLSNTTPLAEVIMDHKVGDVCTV 147 >gi|78048442|ref|YP_364617.1| transcription elongation factor GreB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036872|emb|CAJ24565.1| transcription elongation factor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 168 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARAL+ K + D + P G+ T+ ++ V ++ Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 166 >gi|15639013|ref|NP_218459.1| transcription elongation factor (greA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025253|ref|YP_001933025.1| transcription elongation factor GreA [Treponema pallidum subsp. pallidum SS14] gi|7387718|sp|O83063|GREA_TREPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238689311|sp|B2S1W7|GREA_TREPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3322274|gb|AAC65015.1| transcription elongation factor (greA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017828|gb|ACD70446.1| transcription elongation factor GreA [Treponema pallidum subsp. pallidum SS14] Length = 162 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 81/149 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K + ++EL+ P + I A GDL ENAEY+AA+E Q + L Sbjct: 9 VTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAEYKAAREEQTRLNNMVTRL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA+V D +T+ R++FG +SL SG+ + Y I+G E+ + G++S SP+ Sbjct: 69 QEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L+ ++ G+ ++ EK YEIL + Sbjct: 129 GSNLLNRKTGEQLAFTVGEHEKVYEILSI 157 >gi|294155490|ref|YP_003559874.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145] gi|291600011|gb|ADE19507.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145] Length = 160 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K ++E ERP I A+ +ARA GDLSENAEY AA++ Q + EGR Sbjct: 8 EKIFLAKETLEKYKKEYDHLVNVERPAIQAALKDARAQGDLSENAEYDAARDKQGVIEGR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+I+ +A +I+ T +I G+TV+ + I+G +A+ +S Sbjct: 68 ITELESILDKAVIIE--TSKDGKIGIGSTVTYFSHLDKQQHIVTIMGSHDANPFENKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPG 145 SP+A A++ +E G+ I V+AP Sbjct: 126 ESPLAVAMLDREKGEKIEVDAPS 148 >gi|160892694|ref|ZP_02073484.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50] gi|156865735|gb|EDO59166.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50] Length = 195 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 35 LTESDIKKMEEEIEYRKVVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANEKRIRYL 94 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ AE+I + + D + TV + + ++ Y+IV DV +G++S SP+ Sbjct: 95 DRMVRTAEIIKDES-ADDEVGLNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNISPM 153 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G ++GD + V PG + I+ Sbjct: 154 GKALLGHKVGDRVEV-VPGKGDPFHIV 179 >gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 921 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 82/153 (53%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + VT + F+ + E E + I EA+ GDL ENAEY+AA E Q + Sbjct: 759 DVVLVTRRAFNAKKLEFEHLVNVEMAENSRDIGEAQEKGDLRENAEYKAAMEKQAQLQAA 818 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE + A ++D+S + +++ G TV L K +G+ Y I+G +AD + ++S Sbjct: 819 IKRLEAELKSARILDLSDVKTEKVGIGTTVRLKNKQTGESVTYSILGAWDADTEKNIISY 878 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A++L+GK G+ ++ E YE+L + Sbjct: 879 QSPLAKSLLGKHTGNEATLVFGSTETVYEVLDI 911 >gi|313906219|ref|ZP_07839565.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] gi|313468949|gb|EFR64305.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] Length = 167 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+Q+E+ R ERP+I+KA+ EARA GDLSEN EY AA++ N R+ L Sbjct: 5 LTRSDIRKMQEEIDHRTLVERPKILKAVQEARAQGDLSENFEYYAARKANRENNSRINYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I A +++ + + D++ V++ + + + Y+IV AD G ++ +SP+ Sbjct: 65 TKMIETAIIVEDRS-AEDQVGLNKKVTVKFPDEEETETYKIVTSVRADSMEGRITPNSPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155 RAL+GK GD+ V E EI+QV Sbjct: 124 GRALMGKRAGDLAHVKVNDKLEYDVEIVQV 153 >gi|310820881|ref|YP_003953239.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] gi|309393953|gb|ADO71412.1| Transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ +EL ERP++ +S A A GD SENAEY K+ + R+ L Sbjct: 27 LTRLGAERMHRELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFL 86 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + A ++ + + R+ FGATV+L E G + YQIVG E D Q G +S+ SP Sbjct: 87 QKRLDTATIVTPAEQTDQGRVYFGATVTL-EDEDGVQTTYQIVGSDEIDTQGGRISVESP 145 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I +AL+ K +GD + V P GE I+ + ++ Sbjct: 146 IGKALLRKAVGDSVEVMRPRGEIELTIVAIAYM 178 >gi|220917962|ref|YP_002493266.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955816|gb|ACL66200.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans 2CP-1] Length = 163 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 3/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +GF ++ E E RPRI+ + A A GD SENAEY K+L+ L+ R+ Sbjct: 8 ITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ R FGA V+ VE+ G + ++VG E DV +GL+S+ +P Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQARRVRLVGPDEFDVAAGLISVDAP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK GD++ V+ P G +++V W Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVELTVVEVSW 157 >gi|170693644|ref|ZP_02884802.1| transcription elongation factor GreB [Burkholderia graminis C4D1M] gi|170141426|gb|EDT09596.1| transcription elongation factor GreB [Burkholderia graminis C4D1M] Length = 206 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 49 ITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 108 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D S D++ FGATV ++ GD+ IVG E D+ G VS SP Sbjct: 109 TKRLDLAEIVDSSKQENVDQVFFGATVEYATQD-GDEHTVTIVGIDEVDLDIGHVSWISP 167 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IARAL+ ++GD +++ P G + +IL V Sbjct: 168 IARALLKAKVGDTVTLYTPAGPQPIDILDV 197 >gi|323527030|ref|YP_004229183.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001] gi|323384032|gb|ADX56123.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001] Length = 189 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL EERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 32 ITPAGYRRMRDELLHLIDEERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 92 TKRLDLAEVVDSSKQENVDQVFFGATVEYATED-GEEHTVTIVGIDEVDLDVGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182 >gi|94309804|ref|YP_583014.1| transcription elongation factor GreB [Cupriavidus metallidurans CH34] gi|93353656|gb|ABF07745.1| Transcription elongation factor [Cupriavidus metallidurans CH34] Length = 186 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ +++ EL ERP I++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITAAGYKRLRDELMHLIDVERPDIVQIVSWAASNGDRSENGDYLYGKKRMREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + +AEV+D S M G D+I FGATV+ + SG++ IVG E D+ S VS S Sbjct: 92 TRRLDKAEVVDPS-MQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDSNHVSWIS 149 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIA+ALI GD + + P G + +IL+V + Sbjct: 150 PIAKALIKAREGDTVPLRTPAGIEQIDILEVRY 182 >gi|332995753|gb|AEF05808.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 159 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ QE E+RP I K ++ A GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYQRLVQEHDHLWFEKRPEITKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125 ++ +++D S ++ FGA V +E G+ K ++IVG +E D Q +SI SP Sbjct: 66 RKLLPELKIVDYSAEQEGKVFFGAWVE-IENYEGEVKRFRIVGPEEIYDDQKKYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+GK++ + V P G K + I Sbjct: 125 MARALLGKQIDEDFGVTTPDGFKLWYI 151 >gi|260438639|ref|ZP_05792455.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] gi|292809233|gb|EFF68438.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 3/154 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ T K+Q+E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE Sbjct: 1 MFDEL--TENDIKKMQEEIEYRKVVLRKELLEHVKEARAHGDLSENFEYHAAKKEKNRNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE +I A VI + + D + V L ++ + + ++IV + +GL+ Sbjct: 59 SRIRYLEKMIKTANVISDES-ADDEVGLNNKVELYFEDDDETETFKIVTTVRGNSLNGLI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S SPI +A++ + GD + V G Y +++ Sbjct: 118 SNESPIGKAVLSHKAGDRVFVEVSPGNGYYVVIK 151 >gi|160881677|ref|YP_001560645.1| transcription elongation factor GreA [Clostridium phytofermentans ISDg] gi|254799557|sp|A9KIP3|GREA_CLOPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|160430343|gb|ABX43906.1| transcription elongation factor GreA [Clostridium phytofermentans ISDg] Length = 160 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 85/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYEGLKQLEDELQDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I+ AEV+ + D + G V +++ D+ Y+IVG EA+ G +S SP+ Sbjct: 68 DKILKNAEVVVEDEVDVDTVNIGCLVRILDMEFNDELEYKIVGSTEANSLKGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +ALIG D+I + G Y++L++ Sbjct: 128 GKALIGARKDDVIEIEINGNSFKYKVLEI 156 >gi|291561619|emb|CBL40418.1| Transcription elongation factor [butyrate-producing bacterium SS3/4] Length = 167 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMEEEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+V+ + D + TV + ++ + + Y+IV + GL+S SP+ Sbjct: 65 ERMIRTAKVVSDES-KDDEVGLYNTVDVYFEDDDETETYKIVTTIRGNSLKGLISSESPL 123 Query: 127 ARALIGKELGDIISV 141 RAL+G ++GD + V Sbjct: 124 GRALLGHKVGDRVHV 138 >gi|260771984|ref|ZP_05880901.1| transcription elongation factor GreB [Vibrio metschnikovii CIP 69.14] gi|260612851|gb|EEX38053.1| transcription elongation factor GreB [Vibrio metschnikovii CIP 69.14] Length = 158 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K++QE E+RP I K ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITRAGYEKLKQEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 ++ +++D S ++ FGA V +E +G+ K +IVG +E D + +SI S Sbjct: 66 RKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEMKTLRIVGPEEIYGDAKD-YISIDS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ARAL+ K++ + ++V P G+K + I Sbjct: 124 PMARALLKKQVDEEVTVKTPTGDKLWFI 151 >gi|296137091|ref|YP_003644333.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] gi|295797213|gb|ADG32003.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] Length = 187 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 33 LTPLGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D++ FGATV + + G + IVG E + G +S SP Sbjct: 93 TKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISWISP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ GD +S+ PGG T EIL+V + Sbjct: 152 VARALLKAREGDSVSLPTPGGIATLEILEVSY 183 >gi|332295594|ref|YP_004437517.1| transcription elongation factor GreA [Thermodesulfobium narugense DSM 14796] gi|332178697|gb|AEE14386.1| transcription elongation factor GreA [Thermodesulfobium narugense DSM 14796] Length = 159 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 83/147 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + I +T +G+D+++ EL + + + I + I EA+ + + N EY+ AK Q + Sbjct: 1 MKEIINLTQEGYDRLKNELEYLRDVKLKEISERIQEAKDFAEDFGNLEYEEAKSEQAMVL 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A +ID + R+ G V + + N K Y I+ EAD +G + Sbjct: 61 ARVNELEAQLSNARIIDKDKIEISRVGIGCKVVVKDLNKKTIKEYTILEPIEADPVNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGE 147 S SP+ +AL GK++GD ++V+ PGG+ Sbjct: 121 SFQSPVGKALFGKQVGDEVTVHTPGGQ 147 >gi|266619156|ref|ZP_06112091.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] gi|288869302|gb|EFD01601.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] Length = 186 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 5/148 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK+ T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 20 MYDKL--TKNDIQKMQEEIDYRKLVVRREALEAVKEARAHGDLSENFEYHAAKKDKNQNE 77 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE +I A+++ + D I TV L ++ + + Y++V + GL+ Sbjct: 78 SRIRYLERMIKTAQIVSDESRE-DEIGLYNTVDLYFEDDDEVETYKLVTTVRGNSMKGLI 136 Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146 S SP+ A++G +GD + +N G Sbjct: 137 SSESPLGSAIMGHRVGDRVYVRINEKAG 164 >gi|85057700|ref|YP_456616.1| transcription elongation factor GreA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789805|gb|ABC65537.1| transcription elongation factor GreA [Aster yellows witches'-broom phytoplasma AYWB] Length = 156 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 89/147 (60%), Gaps = 3/147 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 1 MNNKIYELTQTGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 61 EHRISEIQNILKNVRVVKVS--KEREVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +SI SP+ + + G ++GDI+ V + G Sbjct: 119 ISIESPLGQNIKGHQIGDIVFVTSETG 145 >gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] Length = 156 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+ Sbjct: 9 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 67 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +A++ + G ++V AP +I++V Sbjct: 125 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 154 >gi|226355589|ref|YP_002785329.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226317579|gb|ACO45575.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 156 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK+++ L + R +I + + +A A GDL E+A Y A+ Q+ NE R+A++ Sbjct: 8 MTQRGYDKLKETLDHLKTTRREQISEYMGQAIADGDLRESAAYDEARMQQSENEARIADI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A +I + G GA + V+ + G + +++VG E D+ G +S +SPI Sbjct: 68 EYQLEHALIIAEDSAGG--AGLGARIR-VKDDKGKEHQFELVGTYEVDILKGKISDASPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AL GK G+ ++V P G +EIL V + Sbjct: 125 GKALAGKHAGETVNVQLPKGTSRFEILAVEY 155 >gi|154484003|ref|ZP_02026451.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC 27560] gi|149735045|gb|EDM50931.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC 27560] Length = 166 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 80/149 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ ++ Sbjct: 14 LTYAGLQELEAELEDLKVNKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEDI 73 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ EV+ S + +I G + + + + + IVG + + SG +S SP+ Sbjct: 74 EKILKNVEVVAESDIDDTKINVGCHIIIHDFEYDEDLEFSIVGSTQTNSLSGKISNESPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIG E+GDI+ V Y++L + Sbjct: 134 GHALIGHEVGDIVEVEMGDTVSKYKVLDI 162 >gi|50085861|ref|YP_047371.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. ADP1] gi|49531837|emb|CAG69549.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. ADP1] Length = 157 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + R+ L Sbjct: 6 LTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++ S + FGA V L E + G+ ++IVGD+E + +S+ SPI Sbjct: 66 TKLFEVAHKVEYSPEQDGKAYFGAWVEL-ENDEGEIIKFRIVGDEEIYGRKDYISLQSPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+A +GK + D I V P G+K + I Q+ Sbjct: 125 AKACLGKSVDDEIQVQTPTGKKIWYICQI 153 >gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3] gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A] gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3] gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A] Length = 192 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+ Sbjct: 45 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 102 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +A++ + G ++V AP +I++V Sbjct: 161 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 190 >gi|257064643|ref|YP_003144315.1| transcription elongation factor GreA [Slackia heliotrinireducens DSM 20476] gi|256792296|gb|ACV22966.1| transcription elongation factor GreA [Slackia heliotrinireducens DSM 20476] Length = 155 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 3/148 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G +K++ EL + + E+R + + I AR +GD+SEN+EY AK Q + E Sbjct: 1 MANDYVLTPEGKEKLEAELLYLENEKRAEVGERIKIAREFGDISENSEYDDAKNEQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++ +I+ A V++ S +R+ G+TV++ G ++ + IVG EA+ G + Sbjct: 61 VRIAQINDILANATVVEAPKRS-NRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148 S SP+ L+G + GD ++ P G K Sbjct: 118 SNDSPVGSVLLGSKKGDQLTTEGPTGRK 145 >gi|149184390|ref|ZP_01862708.1| transcription elongation factor [Erythrobacter sp. SD-21] gi|148831710|gb|EDL50143.1| transcription elongation factor [Erythrobacter sp. SD-21] Length = 159 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G+ ++ +ERP I++ +S A GD SEN +Y ++ + + Sbjct: 7 PITPAGYAAMKARYDHLLGKERPEIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELGH 66 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VI S R FGATV+L +++ ++K +VGD E D +G + SS Sbjct: 67 LARRMKAARVIVPSDQPDKSRAFFGATVTLADEDD-NEKTVTLVGDDEQDASAGRIGWSS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL G +GD+ +V PGGE+ +EI+ + Sbjct: 126 PLARALKGAGVGDLRTVRLPGGEREWEIVSI 156 >gi|147669340|ref|YP_001214158.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1] gi|146270288|gb|ABQ17280.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1] Length = 266 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDEL-CILKVKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SSPI +AL + GD I + P G Y I Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 260 >gi|312868578|ref|ZP_07728773.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] gi|311095875|gb|EFQ54124.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] Length = 168 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ R Q +RP I + ARA GDLSEN EY AK EL++L E R+ Sbjct: 18 MTKAGYQEIEDEI-ARLQAQRPAKIDQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +E+I + ++ G TV+L + D YQIVG QEAD+ VS SP Sbjct: 76 LNKQLQYSEII--TPADAKQVDLGTTVTLRFDDDNDVVTYQIVGKQEADLAKQKVSFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + RA++ + ++V AP I+++ Sbjct: 134 LGRAIMHQPAATTVTVQAPQSSYQVTIIEI 163 >gi|57234441|ref|YP_181502.1| transcription elongation factor GreA [Dehalococcoides ethenogenes 195] gi|123759708|sp|Q3Z8E7|GREA_DEHE1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|57224889|gb|AAW39946.1| transcription elongation factor GreA [Dehalococcoides ethenogenes 195] Length = 156 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 1/150 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + E Sbjct: 1 MVEKIPMTASGYKKLEDELSTLKVK-RIDVIEEMRLAAMDKDMRENAPYHAAKEQRGQIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+E+ + A+V + + + ++ G+TV L + +G+ Y +V +E + G + Sbjct: 60 GRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTY 150 S SSPI +A+ + G+ I + P G Y Sbjct: 120 SASSPIGKAVFNRNKGEQIEIEVPSGTLQY 149 >gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] Length = 165 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+ Sbjct: 18 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +A++ + G ++V AP +I++V Sbjct: 134 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 163 >gi|18310245|ref|NP_562179.1| transcription elongation factor GreA [Clostridium perfringens str. 13] gi|110801097|ref|YP_695914.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110802369|ref|YP_698592.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|168205506|ref|ZP_02631511.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|168213038|ref|ZP_02638663.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|168217085|ref|ZP_02642710.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] gi|169344009|ref|ZP_02865000.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|182624203|ref|ZP_02951989.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|18144924|dbj|BAB80969.1| transcription elongation factor [Clostridium perfringens str. 13] gi|110675744|gb|ABG84731.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110682870|gb|ABG86240.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|169297917|gb|EDS80012.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|170663031|gb|EDT15714.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|170715452|gb|EDT27634.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|177910617|gb|EDT72985.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|182380772|gb|EDT78251.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] Length = 154 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A ++D S D+ G A + VE + D+ +V + D+++ +SI Sbjct: 65 LTMISTAIIVD--EESNDKSTLGLNSKARIKFVEDD--DEDVVTLVTTMDLDLENMCISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD++ V APGG T E+L++L Sbjct: 121 ESDLGKALMGKKVGDVVEVEAPGGNYTVEVLEIL 154 >gi|241663543|ref|YP_002981903.1| transcription elongation factor GreB [Ralstonia pickettii 12D] gi|240865570|gb|ACS63231.1| transcription elongation factor GreB [Ralstonia pickettii 12D] Length = 187 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYERLRSELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +AEV+D S D+I FGATV+ + G++ IVG E D+ G VS SP Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEETTITIVGTDEVDLDIGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI GD + + P G + +IL+V + Sbjct: 151 IARALIKAREGDTVPLRTPTGVEQIDILEVKY 182 >gi|148378676|ref|YP_001253217.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 3502] gi|153933080|ref|YP_001383060.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|153936284|ref|YP_001386609.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|187777798|ref|ZP_02994271.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC 15579] gi|148288160|emb|CAL82228.1| transcription elongation factor [Clostridium botulinum A str. ATCC 3502] gi|152929124|gb|ABS34624.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|152932198|gb|ABS37697.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|187774726|gb|EDU38528.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC 15579] Length = 154 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 85/150 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID + + + + + N +V +AD + L+S+ S + Sbjct: 65 LTMISTASVIDEKNQNKSVLGVNSKCKIKFIEDEFETNVSLVTTMDADPEKMLISVESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 125 GKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|116623798|ref|YP_825954.1| transcription elongation factor GreB [Candidatus Solibacter usitatus Ellin6076] gi|116226960|gb|ABJ85669.1| transcription elongation factor GreB [Candidatus Solibacter usitatus Ellin6076] Length = 227 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++E R+ ERP + K ++ A + GD SENA+YQ K +GR+ L Sbjct: 47 ITPDGLQRLKEEHRFLLTRERPAVTKVVAWAASNGDRSENADYQYGKRRLRQIDGRIRFL 106 Query: 67 ENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 I AEV+D + + R FGATV +G ++ IVG E D+ +S Sbjct: 107 TKRIDAAEVVDPERPRAGQAATRAFFGATVHYANA-AGTERVVSIVGTDEVDLNRNHISW 165 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ RAL+ GD + + APGG + +L+V + Sbjct: 166 VSPLGRALMKSAAGDRVVLQAPGGTEHLVVLKVCY 200 >gi|293606024|ref|ZP_06688389.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC 43553] gi|292815479|gb|EFF74595.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC 43553] Length = 183 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 32 MTPEGYERLRAELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + D++ FGATV +K +G++ IVG EA+ +G +S SP Sbjct: 92 TKRLDIAEVVDPALQPNRDQVFFGATVRYSDK-AGEEHTVTIVGVDEAEPLAGKISWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD + + PGG + +IL+V + Sbjct: 151 VARALIKAREGDTVVLRTPGGIEELDILEVRY 182 >gi|85710775|ref|ZP_01041836.1| GreB [Idiomarina baltica OS145] gi|85695179|gb|EAQ33116.1| GreB [Idiomarina baltica OS145] Length = 169 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD +Q+EL + ER ++ +S A + GD SENA+Y+ K+ + R+ L Sbjct: 6 ITRRGFDMLQRELNQLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRRIDSRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+D S ++ FGA V +E G + +QIVG E +VSI +P+ Sbjct: 66 TKRLDQLKVVDYSPQQDGQVFFGAFVE-IEDEQGTIRRFQIVGPDEIYDSKDVVSIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K + D ++V P GE+ + I Sbjct: 125 ARALLKKHVDDEVTVVTPKGEQCWFI 150 >gi|160946713|ref|ZP_02093916.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270] gi|158447097|gb|EDP24092.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270] Length = 160 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 72/121 (59%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R I + I AR +GDLSEN+EY AK Q E ++ +L+N+I A++ID + Sbjct: 27 KRKEIAEKIKIARDFGDLSENSEYDEAKNEQAQIEEKIVKLDNMIANAKIIDEVELDTKT 86 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + GATV+LV+ S K Y IVG E++ G +S SP+ +A++GK+ G+ + V P Sbjct: 87 VNVGATVTLVQVESKKKLEYTIVGSAESNPLEGKISNESPVGKAILGKKKGNKVQVQLPN 146 Query: 146 G 146 G Sbjct: 147 G 147 >gi|294625096|ref|ZP_06703742.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664556|ref|ZP_06729899.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600605|gb|EFF44696.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605664|gb|EFF48972.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 168 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163 >gi|296282663|ref|ZP_06860661.1| transcription elongation factor GreB [Citromicrobium bathyomarinum JL354] Length = 165 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G+ ++ RP I++ +S A GD SEN +Y ++ + +A Sbjct: 6 PITPAGYSAMKARYDHLLGTARPEIVETVSWAAGNGDRSENGDYLYGRKKMREIDRELAH 65 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VID + DR+ FGATV+LV+++ +K +VG+ EA+ G + S Sbjct: 66 LARRMKSARVIDPADQPNRDRVFFGATVTLVDEDD-REKVLTLVGNDEAEASEGRIGWGS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL G E+GD+ V P G + +E+L++ Sbjct: 125 PMARALRGAEVGDLRMVKGPTGLREWEVLKI 155 >gi|255281437|ref|ZP_05345992.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] gi|255267925|gb|EET61130.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] Length = 159 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 79/147 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ E+ + R + I EAR GDLSENAEY AAK+ Q E R+ E+ Sbjct: 8 LTYSGLKALEDEMHDLKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I+ AEV+ + ++I G TV L ++ ++ YQIVG EA+ G +S SP+ Sbjct: 68 EKILKNAEVVVEDDVDLNKINVGCTVKLFDEEYEEEIEYQIVGSTEANSLMGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +ALIG +G I V G Y +L Sbjct: 128 GKALIGASIGQEIEVETQVGVCKYRVL 154 >gi|152002554|dbj|BAF73578.1| transcription elongation factor [Onion yellows phytoplasma OY-W] Length = 170 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 75 EHRISEIQNILKNVRVVKVS--KEREVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +SI SP+ + + G ++GD++ V G Sbjct: 133 ISIESPLGKNIKGHQIGDVVFVTGETG 159 >gi|306821055|ref|ZP_07454673.1| transcription elongation factor GreA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550891|gb|EFM38864.1| transcription elongation factor GreA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 165 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G++ I++EL + R + + EAR++GDLSENAEY AK Q E R+A Sbjct: 9 ILLTKEGYENIEKELDELKSVRRKEVSDKLKEARSFGDLSENAEYDEAKNEQAQLEERIA 68 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG---DKKNYQIVGDQEADVQSGLVS 121 +LEN++ +A +I + + + + G V + K ++++Y IVG E++ G +S Sbjct: 69 KLENMLRKAVIISETDLKMNIVNLGTQVKVSIKYPDGEVEEEDYTIVGSAESNPAEGKIS 128 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SPI +ALIG + G I V P G Sbjct: 129 NDSPIGKALIGAKKGQKIDVQVPDG 153 >gi|300855815|ref|YP_003780799.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300435930|gb|ADK15697.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 86/150 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + DK+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTQENIDKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++I+ A VID+ + I + + D++ +V +AD ++ L+SI S + Sbjct: 65 LSMISTATVIDVKSADKSVIGVNSKFKIKFVEDEDEEIVSLVTTIDADPENMLISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+GK++GD + V+AP + T EIL++L Sbjct: 125 GKALVGKKVGDTVEVDAPSEKYTVEILEML 154 >gi|168209613|ref|ZP_02635238.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|170712210|gb|EDT24392.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] Length = 154 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A ++D S D+ G A + VE + D+ +V + D+++ +SI Sbjct: 65 LTMISTAIIVD--EESNDKSTLGLNSKARIKFVEDD--DEDVVTLVTTMDLDLENMCISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK +GD++ V APGG T E+L++L Sbjct: 121 ESDLGKALMGKNVGDVVEVEAPGGNYTVEVLEIL 154 >gi|323143848|ref|ZP_08078514.1| transcription elongation factor GreB [Succinatimonas hippei YIT 12066] gi|322416366|gb|EFY07034.1| transcription elongation factor GreB [Succinatimonas hippei YIT 12066] Length = 207 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + QEL + E+RP + + +S A + GD SENA+YQ K L + R+ L Sbjct: 9 ITREGYDLLHQELDYLWLEKRPDVTQKVSWAASLGDRSENADYQYNKRLLAQIDRRIRYL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V++ + ++ FGA V + + +IVG E ++ +S+ SP+ Sbjct: 69 RGCMNNLQVVEYNHQQDGKVFFGAYVEIEADDDESLMQVRIVGGDEIFGRTNYISVDSPM 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+GK GD SV+ P G + + I ++ + Sbjct: 129 AKALLGKAEGDDASVHTPKGARIWYINRIAY 159 >gi|239997048|ref|ZP_04717572.1| transcription elongation factor GreB [Alteromonas macleodii ATCC 27126] Length = 161 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +V+D + ++ FGA V +E +G ++VG E + +SI Sbjct: 62 VRYLRKCLENLKVVDYDSQQEGKVFFGAWVE-IENEAGKVMELRLVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+GKE D V G K + I Sbjct: 121 DSPMARALLGKEEDDEFVVKTETGTKEWWI 150 >gi|58582894|ref|YP_201910.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427488|gb|AAW76525.1| transcription elongation factor and transcript cleavage [Xanthomonas oryzae pv. oryzae KACC10331] Length = 188 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 35 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 92 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 93 YLSKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDS 152 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + P G+ T+ ++ V Sbjct: 153 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 183 >gi|304310877|ref|YP_003810475.1| Transcription elongation factor [gamma proteobacterium HdN1] gi|301796610|emb|CBL44822.1| Transcription elongation factor [gamma proteobacterium HdN1] Length = 158 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++QQEL +ERP++ K + A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITPEGYTELQQELDELWYKERPKVTKLVQWAASLGDRSENADYQYNKKRLREIDRRVRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + V++ +++ ++ FGA V LV+ + + +++IVG E + VS+++PI Sbjct: 66 RGRLGKLRVVEYNSVQEGKVYFGAWVGLVDVDD-QRLSFRIVGPDEIYGKKNYVSVNAPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 RA +GK GD I+V P K +EI Sbjct: 125 VRACLGKSEGDEITVRTPEATKEWEI 150 >gi|229829708|ref|ZP_04455777.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM 14600] gi|229791697|gb|EEP27811.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM 14600] Length = 160 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + +R + I+EAR GDLSENAEY+AAKE Q E R+ E+ Sbjct: 9 MTYEGLQKLEAELEDLKTNKRKANSRDIAEAREQGDLSENAEYEAAKEEQRQIENRINEI 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ AE+ D + + G+TV+L++ ++ Y+IVG E + G +S SP+ Sbjct: 69 TKILKNAEIAD-DIVDKSIVNIGSTVTLLDLEYDEELTYKIVGSTEVNSLGGKISNESPV 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++ + G+ ++V G Y+IL + Sbjct: 128 GAAILHHKAGETVTVETEAGSFKYKILSI 156 >gi|289663189|ref|ZP_06484770.1| transcription elongation factor GreB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669412|ref|ZP_06490487.1| transcription elongation factor GreB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 167 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ K + D P G+ T+ ++ V + Sbjct: 133 PLARALLKKRVDDEFDAQLPAGKHTFVVMSVHY 165 >gi|255526929|ref|ZP_05393824.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296184898|ref|ZP_06853309.1| putative transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255509377|gb|EET85722.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296050680|gb|EFG90103.1| putative transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 155 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 5/154 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E R+ Sbjct: 4 IMLTEVGKKKLEEELEYLKTVKRAEIKAALKYARAQGDLSENADYDAAKDDQSMTETRIM 63 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEK--NSGDKKNYQIVGDQEADVQSGLVSI 122 ELE + A +I+ S D + FG + + K + D + +V E+DV++ +SI Sbjct: 64 ELEQQLKNAVIIEDS--DEDHV-FGINKTALVKFYDIDDTEEVTLVSSVESDVKNMKISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL E+G ++V +P GE E+L++L Sbjct: 121 ESPLGAALYKIEVGKKVAVESPDGEYEVEVLKIL 154 >gi|154249834|ref|YP_001410659.1| transcription elongation factor GreA [Fervidobacterium nodosum Rt17-B1] gi|154153770|gb|ABS61002.1| transcription elongation factor GreA [Fervidobacterium nodosum Rt17-B1] Length = 156 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+ +T +G++ +++EL +++ I + I AR GDLSEN+EYQ AK Q Sbjct: 1 MEKVKLTKEGYELLKKELDELKRQLMFEIPERIKAARELGDLSENSEYQEAKNEQGRIAS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AE+I ++ S + G V L ++G++ Q+V QEAD+ + +S Sbjct: 61 RINELEQMLMNAEIITEASNSST-VNLGDWVILKNLDTGEEMKIQLVNPQEADIFANKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SP+ R + G + G + + AP G Y+++++ Sbjct: 120 IESPLGRGVNGAKKGQTVKIKAPKGIVKYQVIEI 153 >gi|251787893|ref|YP_003002614.1| transcription elongation factor GreB [Dickeya zeae Ech1591] gi|247536514|gb|ACT05135.1| transcription elongation factor GreB [Dickeya zeae Ech1591] Length = 160 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V VE GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVE-VENEDGDIKCFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ K + + V+ P G K + + ++ Sbjct: 125 ARALLKKAVDEEAVVSTPAGPKVWYVNKI 153 >gi|289432606|ref|YP_003462479.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT] gi|288946326|gb|ADC74023.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT] Length = 266 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDELGILKVK-RIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SSPI +AL + GD I + P G Y I Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 260 >gi|166712646|ref|ZP_02243853.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 200 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 45 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 102 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 103 YLSKRLEALRVVDTAPTEPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 162 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ K + D + P G+ T+ ++ V + Sbjct: 163 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVHY 195 >gi|332143379|ref|YP_004429117.1| transcription elongation factor GreB [Alteromonas macleodii str. 'Deep ecotype'] gi|327553401|gb|AEB00120.1| transcription elongation factor GreB [Alteromonas macleodii str. 'Deep ecotype'] Length = 161 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +V+D ++ FGA V +E +G ++VG E + +SI Sbjct: 62 VRYLRKCLENLKVVDYDPQQEGKVFFGAWVE-IENEAGKVMELRLVGYDEIFGRRDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ARALIGKE D V G K + I ++ Sbjct: 121 DSPMARALIGKEEDDEFVVKTETGTKEWWINRI 153 >gi|319787549|ref|YP_004147024.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis 11-1] gi|317466061|gb|ADV27793.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis 11-1] Length = 166 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T G D+++ EL WR Q RP ++KA++ A A GD SENAEY K+ + R+ Sbjct: 15 ITRAGHDRLKAELDDLWRVQ--RPEVVKALAAAAAEGDRSENAEYTYRKKQLAGIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V++ + + + FGA V L ++G+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLPALRVVETAPSDPEAVFFGAWVELERIDTGELARYRIVGPDETDAALGHISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + V PGG + ++ V Sbjct: 133 PLARALLRKRIDDEVEVQLPGGPARFVVVDV 163 >gi|84624754|ref|YP_452126.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577733|ref|YP_001914662.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368694|dbj|BAE69852.1| Transcription elongation factor greB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522185|gb|ACD60130.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 168 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163 >gi|90407158|ref|ZP_01215346.1| transcription elongation factor [Psychromonas sp. CNPT3] gi|90311734|gb|EAS39831.1| transcription elongation factor [Psychromonas sp. CNPT3] Length = 163 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF +Q EL +E RP I + ++ A + GD S+NA+Y+ K + + R+ L Sbjct: 6 ITPEGFKTLQTELEHLWREYRPEITRKVTWAASLGDRSDNADYKENKRILRQIDSRIRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120 + + +I S +++ FGA +S +E + G+ KN++IVG E + + Sbjct: 66 TKRLQQVSIISPSKQQANKVFFGAKLS-IENDEGEIKNFKIVGPDEIYQRGTLQTRKDYI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SP+ARAL+ E+ D V P G +T+ IL + Sbjct: 125 SIDSPMARALLKLEVDDEAQVKTPTGIQTWYILTI 159 >gi|294788550|ref|ZP_06753792.1| transcription elongation factor GreB [Simonsiella muelleri ATCC 29453] gi|294483427|gb|EFG31112.1| transcription elongation factor GreB [Simonsiella muelleri ATCC 29453] Length = 162 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G +QQEL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 5 KYYMTPQGHQTLQQELYQLVHKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 64 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A VID T D+I F ATV+ +E+++G ++ +IVG+ E D +S Sbjct: 65 RFLTKRLENALVIDPETREFTDQIFFSATVT-IERSNGVEQTVKIVGEDEIDATKNKISW 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALI GD + +N P G + +IL V +I Sbjct: 124 KSPLARALIKAREGDRVWLNVPNGREAIDILVVEYI 159 >gi|325663588|ref|ZP_08151995.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470274|gb|EGC73506.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium 4_1_37FAA] Length = 167 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+++ + D + TV L + + + +++V + GL+S SPI Sbjct: 65 ERMIKTAKIVSDESKE-DEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++GK+ GD + + G Y +++ Sbjct: 124 GKAILGKKAGDRVFIRVSGDAGYYVVVK 151 >gi|167769661|ref|ZP_02441714.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM 17241] gi|167668022|gb|EDS12152.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM 17241] Length = 151 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 86/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D +++EL + R I + I AR +GDLSEN+EY AK Q + E R+ +L Sbjct: 1 MTQEGYDALKKELNELKSVTRGEISEKIRVARGFGDLSENSEYDEAKNEQAVVEARIKKL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ + ++I+ +S D ++ G+ V +++ + ++ Y I E+ +S SP+ Sbjct: 61 EDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + LIG ++GD++ ++AP +IL++ Sbjct: 121 GKGLIGHKVGDVVEIHAPAAVLKLKILEI 149 >gi|308189955|ref|YP_003922886.1| transcription elongation factor [Mycoplasma fermentans JER] gi|319777236|ref|YP_004136887.1| transcription elongation factor [Mycoplasma fermentans M64] gi|238809906|dbj|BAH69696.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624697|gb|ADN69002.1| transcription elongation factor [Mycoplasma fermentans JER] gi|318038311|gb|ADV34510.1| Transcription elongation factor [Mycoplasma fermentans M64] Length = 163 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 2/144 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K Q E + ERP I A+ EARA GDLSENAEY AA++ Q + E R Sbjct: 7 EKIILAKETLEKYQAEYEHLIKVERPEIQAALKEARAQGDLSENAEYDAARDRQGIVEAR 66 Query: 63 MAELENIITRAEVIDISTMSGDRI--AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ELE I+ AEVI+ + ++ GATV + + + +I+G +++ G + Sbjct: 67 IVELEGILANAEVIETNQNKKGKLKAGIGATVKYLNLKTNKEITVKIMGIHDSNPMEGNI 126 Query: 121 SISSPIARALIGKELGDIISVNAP 144 S SP+A+A++ + G + V+ P Sbjct: 127 SNESPVAQAIMEGDEGATVEVDVP 150 >gi|168178054|ref|ZP_02612718.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|170755319|ref|YP_001780312.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|169120531|gb|ACA44367.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|182671032|gb|EDT83006.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] Length = 154 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + D+ G A + VE + N +V +A+ ++ L+S+ Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPENMLISV 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|329894420|ref|ZP_08270267.1| Transcription elongation factor GreB [gamma proteobacterium IMCC3088] gi|328923067|gb|EGG30391.1| Transcription elongation factor GreB [gamma proteobacterium IMCC3088] Length = 171 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G ++ EL + ERP++ A+ EA GD SEN +Y K+ + R+ L Sbjct: 15 ITAAGAAALKSELDELWRVERPKVTDAVREAAKNGDRSENGDYIYGKKRLREIDSRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ + DRI FGA+V+L E+ G + IVG E D ++G +SI +PI Sbjct: 75 TKRLESLKVVSAAPSEPDRIFFGASVTL-EEEDGSLQTLHIVGADEIDPKTGKISIDAPI 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +RAL+GK + D I AP G + ++ V + Sbjct: 134 SRALLGKRIDDEIEYQAPAGRQVRYVIDVNY 164 >gi|73748580|ref|YP_307819.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1] gi|73660296|emb|CAI82903.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1] Length = 170 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG Sbjct: 15 VEKIPMTASGYKKLEDELGILKVK-RIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 73 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 74 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 133 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SSPI +AL + GD I + P G Y I Sbjct: 134 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 164 >gi|332284095|ref|YP_004416006.1| transcription elongation factor GreB [Pusillimonas sp. T7-7] gi|330428048|gb|AEC19382.1| transcription elongation factor GreB [Pusillimonas sp. T7-7] Length = 193 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ +++ EL EERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 40 ITTAGYQRLRAELAHLMNEERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 99 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV++ +T D++ FGATV +K +G+ IVG EA+ G +S SP Sbjct: 100 TKRLEVAEVVNPATQPNKDQVFFGATVEYSDK-AGETFRVTIVGVDEAEPLQGRISWISP 158 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ GD +++ P G +IL+V + Sbjct: 159 VARALLKAREGDTVTLRTPAGVDELDILEVSY 190 >gi|21243461|ref|NP_643043.1| transcription elongation factor GreB [Xanthomonas axonopodis pv. citri str. 306] gi|25452986|sp|Q8PJ11|GREB_XANAC RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21109017|gb|AAM37579.1| transcription elongation factor and transcript cleavage [Xanthomonas axonopodis pv. citri str. 306] Length = 168 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDAGSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163 >gi|88798240|ref|ZP_01113826.1| transcription elongation factor GreB [Reinekea sp. MED297] gi|88779016|gb|EAR10205.1| transcription elongation factor GreB [Reinekea sp. MED297] Length = 170 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + ERPR+ + +S+A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGEARMRAELHELWKVERPRVTQEVSDAAKQGDRSENAEYIYGKKRLRQIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ R+ FGA V +V+++ + ++IVG E DV +S+ SP+ Sbjct: 75 TKRLEKLQVVHARPDDQSRVFFGAWVRVVDEDES-PRVFRIVGTDEFDVDPRYISVDSPM 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K++ D + V P GE Y + Q+ + Sbjct: 134 ARALLKKQVDDEVIVRLPDGEAVYYVDQISY 164 >gi|103487218|ref|YP_616779.1| transcription elongation factor GreB [Sphingopyxis alaskensis RB2256] gi|98977295|gb|ABF53446.1| transcription elongation factor GreB [Sphingopyxis alaskensis RB2256] Length = 160 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 ++ GF ++ E +ERP++++ IS A GD SEN +Y K L+ ++ R+ Sbjct: 9 ISPAGFAALRAEYDALLGDERPKLVEVISWAAGNGDRSENGDYIYGRKRLREIDR-RLGF 67 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A V+D + RI FGATV L + + ++ +VGD EA+ SG + +S Sbjct: 68 LARRMKAARVVDPAQQPDKSRIWFGATVELADDDDA-RRTVTLVGDDEAEAGSGRIGWNS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL G +GD+ +V P G K +E++ + Sbjct: 127 PLARALRGAAVGDLRTVQLPAGPKLWEVIAI 157 >gi|134095318|ref|YP_001100393.1| transcription elongation factor and transcript cleavage [Herminiimonas arsenicoxydans] gi|133739221|emb|CAL62270.1| Transcription elongation factor GreB (Transcript cleavage factor GreB) [Herminiimonas arsenicoxydans] Length = 182 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 5 IPVTSKGFDKIQQELRWRQQ------EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 IPV +K + Q LR + + ERP +++ +S A + GD SEN +Y K Sbjct: 19 IPVGAKNYMTPQGHLRMKNELLNLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQ 78 Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 +GR+ L + AEV+D + G D+I FGATV E +GD+ I+G E D Sbjct: 79 IDGRIRFLTKRLDLAEVVDPTVHYGSDQIFFGATVRY-ETQAGDEHTVTILGIDELDPLH 137 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +S SP+ARAL GD +++ PGG + IL+V + Sbjct: 138 GKISWISPVARALTKAREGDSVTLKTPGGLEELLILEVTY 177 >gi|294668892|ref|ZP_06733982.1| transcription elongation factor GreB [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309189|gb|EFE50432.1| transcription elongation factor GreB [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 162 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 8 ITPAGWRSLKDELYRLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 67 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D T + D+I FGATV+L+ N G ++ +IVG E D +S SP Sbjct: 68 TKRLEAAQVVDPETREATDQIFFGATVTLLRGN-GSEQTVKIVGIDEIDTAQNKISWISP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD +S+N P G + EIL+V ++ Sbjct: 127 LARCLIKAREGDEVSLNTPEGREDIEILEVAYV 159 >gi|319935513|ref|ZP_08009948.1| transcription elongation factor [Coprobacillus sp. 29_1] gi|319809544|gb|EFW05961.1| transcription elongation factor [Coprobacillus sp. 29_1] Length = 161 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 96/160 (60%), Gaps = 7/160 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T G +K+++E ERP++I+ + AR+ GDLSENA+Y +A++ Q E R Sbjct: 4 DAVLLTQSGVEKLKKEREQLINIERPKVIEELQLARSQGDLSENADYDSARDKQAHIESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120 + E++ ++ ++ID S M GATV++++ + + +++ IVG E D +G + Sbjct: 64 IKEIDQMLLHVQIIDESQMDSAVAKPGATVTILDLSEEGAEPESFTIVGTFETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYE--ILQVLWI 158 S SP+A+A++ + +I+SV G + YE IL++ +I Sbjct: 124 SNESPLAKAILEHGVNEIVSV---GVAEPYEVKILKIEYI 160 >gi|295110686|emb|CBL24639.1| Transcription elongation factor [Ruminococcus obeum A2-162] Length = 166 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 3/139 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +KI++E+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 4 KLTKRDVEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A V+D S+ S D + V + + G+ + Y++V + VSI SP Sbjct: 64 LERMLKTATVVDDSSKS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESP 122 Query: 126 IARALIGKELGD--IISVN 142 I +AL G +GD ++ VN Sbjct: 123 IGKALKGHRVGDRVLVKVN 141 >gi|170759281|ref|YP_001786034.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|169406270|gb|ACA54681.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] Length = 154 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + D+ G A + VE + N +V +A+ + L+S+ Sbjct: 65 LTMISTASVID--ERNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPEKMLISV 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|171057421|ref|YP_001789770.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6] gi|170774866|gb|ACB33005.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6] Length = 189 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++ EL ERPR+++A+S A GD SEN +Y K+ + R+ L Sbjct: 33 MTPQGWSSLRAELMTLLDVERPRVVEAVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D++ FGATV+ + GD++ I G E+D G VS SP Sbjct: 93 TKRLDIAEVADPSLHHGSDQVFFGATVTYA-NSRGDERTVTIKGIDESDSLKGEVSWVSP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IARALI GD + + PGG + E+L+V Sbjct: 152 IARALIKAREGDEVQLMTPGGLERLEVLEV 181 >gi|153941346|ref|YP_001390030.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|152937242|gb|ABS42740.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|295318115|gb|ADF98492.1| transcription elongation factor GreA [Clostridium botulinum F str. 230613] Length = 154 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + D+ G A + VE + N +V +A+ + L+S+ Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPEKMLISV 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|149927812|ref|ZP_01916063.1| transcription elongation factor GreB [Limnobacter sp. MED105] gi|149823434|gb|EDM82665.1| transcription elongation factor GreB [Limnobacter sp. MED105] Length = 185 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ +++ EL + ERP ++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPKGYRRLRDELTHLVKTERPEVVSVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 AEV+D +T + I FGATV+ + + G++ +IVG E D G +S SP Sbjct: 92 TKRTEIAEVVDPATQQELESIFFGATVTYI-NSKGEELTVKIVGVDEVDTAKGHISWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARAL+ + GD++ + P G EI++V ++ Sbjct: 151 VARALLKAKEGDVVQLMTPAGRDELEIVEVRYV 183 >gi|262369479|ref|ZP_06062807.1| transcription elongation factor and transcript cleavage [Acinetobacter johnsonii SH046] gi|262315547|gb|EEY96586.1| transcription elongation factor and transcript cleavage [Acinetobacter johnsonii SH046] Length = 157 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + R+ L Sbjct: 6 LTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++ S + FGA V L E + G+ ++IVGD E + +S+ SPI Sbjct: 66 TKLFEVAYKVEYSPEQDGKAYFGAWVEL-ENDEGEIIKFRIVGDDEIYGRKDYISLQSPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+A +GK + D I V+ P G+K + I ++ + Sbjct: 125 AKACLGKSVDDEIQVHTPTGKKNWYIAKIFY 155 >gi|293381483|ref|ZP_06627478.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus crispatus 214-1] gi|290921953|gb|EFD98960.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus crispatus 214-1] Length = 147 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L + Sbjct: 5 GYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYLGKQL 63 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ +A+ Sbjct: 64 KYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAI 121 Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155 + KE G +V AP GE I++V Sbjct: 122 MKKEAGTTATVAAPVGEYQVTIVEV 146 >gi|224542870|ref|ZP_03683409.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM 15897] gi|224524200|gb|EEF93305.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM 15897] Length = 162 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 8/156 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+ ++ +GF+K++ E ERP +I+ I AR+ GDLSENA+Y AA++ Q E Sbjct: 4 MDKKVQISREGFEKLKAERENLINVERPAVIEEIKLARSQGDLSENADYDAARDKQARIE 63 Query: 61 GRMAELENIITRAEVI--DISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQ 116 R+ ELE ++ A +I D+ + + GATV++++ + + + + I+G E D Sbjct: 64 ERIKELEVMMQNAVIIGSDVK-VDTHVVNLGATVTVLDLSEENPEPDTFTILGSTETDPL 122 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 G +S SP+A+AL+ ++GD+++V G K Y++ Sbjct: 123 HGKISNESPLAKALMTHKIGDVVTV---GVAKPYDV 155 >gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM 6192] gi|306532518|gb|ADN02052.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM 6192] Length = 898 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 2/147 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + + Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ + RA+++ + +I+FG V+L+ K + ++ Y I+G E++ G++S S Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNKETKKRETYVILGPWESNPDKGIISYLS 861 Query: 125 PIARALIGKELGDIISVNAPGGEKTYE 151 P L G + G+ + E+TY Sbjct: 862 PFGSELYGHKEGEELEFTI--NERTYH 886 >gi|325971211|ref|YP_004247402.1| transcription elongation factor GreA [Spirochaeta sp. Buddy] gi|324026449|gb|ADY13208.1| transcription elongation factor GreA [Spirochaeta sp. Buddy] Length = 906 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 70/130 (53%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T+ + ++EL + Q E P + + I AR GDL EN+EY+ KE QNL + L Sbjct: 754 TAASLEAKKKELEYIQHVELPEVAREIGTAREMGDLRENSEYKYGKEKQNLLNNTLRRLA 813 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA VI + +I FG V LV+ G + Y I+G E++ ++++S+P Sbjct: 814 EEIDRATVISKDKVDTTKIGFGTKVVLVDHTKGSEVVYTIMGPWESNPDENIINLSAPFG 873 Query: 128 RALIGKELGD 137 RAL+ E+G+ Sbjct: 874 RALLNHEIGE 883 >gi|317406344|gb|EFV86575.1| transcription elongation factor [Achromobacter xylosoxidans C54] Length = 183 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L Sbjct: 31 MTPEGYERLRGELTHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + D++ FGATV L +G+ IVG EA+ +G +S SP Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATV-LYSDKAGEDHTVTIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD + + PGG + +IL+V + Sbjct: 150 VARALIKAREGDTVVLRTPGGIEELDILEVRY 181 >gi|39938788|ref|NP_950554.1| transcription elongation factor [Onion yellows phytoplasma OY-M] gi|39721897|dbj|BAD04387.1| transcription elongation factor [Onion yellows phytoplasma OY-M] Length = 170 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 75 EHRISEIQNILKNVRVVKVSKER--EVSIGKKVSLELLHTKQQQEIELVSTLEADPFNNK 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +SI SP+ + + G ++GD++ V G Sbjct: 133 ISIESPLGQNIKGHQIGDVVFVTGETG 159 >gi|254252970|ref|ZP_04946288.1| Transcription elongation factor [Burkholderia dolosa AUO158] gi|124895579|gb|EAY69459.1| Transcription elongation factor [Burkholderia dolosa AUO158] Length = 187 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV + GD+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENTDQVFFGATVDYATPD-GDEHTITIVGIDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI ++GD +++ P G + ++L V + Sbjct: 150 IARALIKAKVGDTVTLMTPAGPQPIDVLDVRY 181 >gi|148548662|ref|YP_001268764.1| transcription elongation factor GreB [Pseudomonas putida F1] gi|148512720|gb|ABQ79580.1| transcription elongation factor GreB [Pseudomonas putida F1] Length = 162 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S R+ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPEQEGRVFFGAWVE-IENDDGETMKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150 >gi|325923368|ref|ZP_08185038.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC 19865] gi|325546138|gb|EGD17322.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC 19865] Length = 187 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 34 ITPDGHARLKAELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 91 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA V L + +SGD +Y++VG E D G +SI S Sbjct: 92 YLSKRLEALRVVDTAPTDPRAVFFGAQVELEDADSGDLLHYRVVGPDETDAGRGWISIDS 151 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D P G+ T+ ++ V Sbjct: 152 PLARALLKKRVDDEFEAQLPSGKYTFVVVSV 182 >gi|332298363|ref|YP_004440285.1| transcription elongation factor GreA [Treponema brennaborense DSM 12168] gi|332181466|gb|AEE17154.1| transcription elongation factor GreA [Treponema brennaborense DSM 12168] Length = 899 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 73/126 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K F++ +Q+L + P K I EA A GDL ENAEY+AAKE Q L +L Sbjct: 746 VTAKMFEQKKQQLEHITSVDIPANSKEIGEALAQGDLRENAEYKAAKERQTLLASTATKL 805 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I RA + D +T + R++FG V+L SG+ + Y I+G E+D + ++S SP Sbjct: 806 QDEINRARIFDPTTGTTARVSFGTVVTLKNDVSGESEEYTILGPWESDPDNKVISYMSPF 865 Query: 127 ARALIG 132 A++ Sbjct: 866 GNAILN 871 >gi|113866980|ref|YP_725469.1| transcription elongation factor GreB [Ralstonia eutropha H16] gi|113525756|emb|CAJ92101.1| transcription elongation factor [Ralstonia eutropha H16] Length = 187 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITAEGYNRLRNELMQLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +AEV+D S D+I FGATV+ + +G++ IVG E D+ S VS SP Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYANR-AGEETTITIVGMDEVDLDSNHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ALI GD +++ P G + +IL+V + Sbjct: 151 IAKALIKAREGDTVALRTPAGVEQIDILEVRY 182 >gi|126664546|ref|ZP_01735530.1| transcription elongation factor GreB [Marinobacter sp. ELB17] gi|126630872|gb|EBA01486.1| transcription elongation factor GreB [Marinobacter sp. ELB17] Length = 157 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 3/147 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D +QQEL + ERP + + ++ A GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDLLQQELDQLWRHERPEVTRKVTWAAGLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSP 125 +V+ S ++ FGA +SL++++ DK ++IVG E ++ S+ +P Sbjct: 66 RKRFEELKVVAYSPEQEGKVFFGAWISLLDED--DKPLTFRIVGPDEIYGRNDYASVDAP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + RA + KE+GD + V P GEKT+ I Sbjct: 124 LVRACLKKEVGDEVVVILPAGEKTWLI 150 >gi|206561354|ref|YP_002232119.1| transcription elongation factor GreB [Burkholderia cenocepacia J2315] gi|198037396|emb|CAR53331.1| transcription elongation factor [Burkholderia cenocepacia J2315] Length = 187 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV E G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI ++GD +++ P G + +IL V + Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181 >gi|291536540|emb|CBL09652.1| transcription elongation factor GreA [Roseburia intestinalis M50/1] Length = 167 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VI + + D + TV++ + +++ Y+IV + L+S SP+ Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKIVTTVRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISV 141 +AL+G ++GD + V Sbjct: 124 GKALLGHKVGDRVEV 138 >gi|89095170|ref|ZP_01168094.1| transcription elongation factor GreB [Oceanospirillum sp. MED92] gi|89080528|gb|EAR59776.1| transcription elongation factor GreB [Oceanospirillum sp. MED92] Length = 169 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 93/153 (60%), Gaps = 6/153 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T++G+ ++ EL++ + +RP + +++ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITAEGYKRLNDELKYLWKVKRPEVTQSVKEAAAQGDRSENAEYIYGKKQLREIDR-RVRY 73 Query: 66 LENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + V+D + D + FGA V+L+++ +K+ ++IVG E ++ +S+ Sbjct: 74 LSKRLEDMVVVDRAPTPDKQDTVFFGAWVTLLDEEELEKR-FRIVGPDEIGDEADYISVD 132 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQV 155 SP+AR ++ K+LGD + + P G E YEIL++ Sbjct: 133 SPLARLILKKQLGDEVCLEKPDGSEAWYEILRI 165 >gi|107022081|ref|YP_620408.1| transcription elongation factor GreB [Burkholderia cenocepacia AU 1054] gi|116689025|ref|YP_834648.1| transcription elongation factor GreB [Burkholderia cenocepacia HI2424] gi|170732314|ref|YP_001764261.1| transcription elongation factor GreB [Burkholderia cenocepacia MC0-3] gi|254246039|ref|ZP_04939360.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|105892270|gb|ABF75435.1| transcription elongation factor GreB [Burkholderia cenocepacia AU 1054] gi|116647114|gb|ABK07755.1| transcription elongation factor GreB [Burkholderia cenocepacia HI2424] gi|124870815|gb|EAY62531.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|169815556|gb|ACA90139.1| transcription elongation factor GreB [Burkholderia cenocepacia MC0-3] Length = 187 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV E G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI ++GD +++ P G + +IL V + Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181 >gi|162447758|ref|YP_001620890.1| transcription elongation factor GreA [Acholeplasma laidlawii PG-8A] gi|229485767|sp|A9NGN4|GREA_ACHLI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|161985865|gb|ABX81514.1| transcription elongation factor [Acholeplasma laidlawii PG-8A] Length = 158 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 7/146 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D+++ EL + +R ++A+ EAR GDLSENA+Y AA+ Q E R+ E+ Sbjct: 9 LTQSGLDQLKDELTHLKDVKRVENLEALKEAREQGDLSENADYDAARNEQARIEARILEI 68 Query: 67 ENIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+I+ ++I D ST I + VEKN + Y +VG EAD ++ +SI Sbjct: 69 ESILKNVKIIRTNDDSTTVN--IGKKVLLHFVEKNKDVE--YHVVGTIEADPKNFKISIE 124 Query: 124 SPIARALIGKELGDIISVNAPGGEKT 149 SP+ RA+ GKE+GD++ + + +++ Sbjct: 125 SPLGRAIKGKEVGDLVQIKSATNKQS 150 >gi|325916905|ref|ZP_08179150.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC 35937] gi|325536851|gb|EGD08602.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC 35937] Length = 167 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHSRLKVELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAVLGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFEAQLPAGKHTFVVVSV 163 >gi|291087950|ref|ZP_06347975.2| transcription elongation factor GreA [Clostridium sp. M62/1] gi|291073509|gb|EFE10873.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|295092686|emb|CBK78793.1| transcription elongation factor GreA [Clostridium cf. saccharolyticum K10] Length = 172 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KIQ+E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 10 LTQSDIRKIQEEIDYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A V+ + S D + T++L ++ ++ Y++V + +SI SP+ Sbjct: 70 ENMIKNARVVSDKSRS-DEVGLNDTITLYFEDDDEEDVYRLVTSIRGNSLENKISIESPL 128 Query: 127 ARALIGKELGD--IISVNAPGG 146 +A+ G ++GD + VN G Sbjct: 129 GKAVRGHKVGDRVYVEVNDRAG 150 >gi|226947932|ref|YP_002803023.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] gi|226844208|gb|ACO86874.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] Length = 154 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + D+ G A + VE + N +V +A+ ++ L+S+ Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPENMLISV 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+++++ Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVIEII 154 >gi|87199462|ref|YP_496719.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|87135143|gb|ABD25885.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 182 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D P+T GF ++ ERP I++ +S A GD SEN +Y ++ + Sbjct: 25 DGHPITPAGFAALRARYDHLLGTERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRE 84 Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A L + + V+D + R+ FGATV + +++ ++K +VGD E D GL+ Sbjct: 85 LAFLARRMKASRVVDPARQEDRSRVLFGATVEIADEDD-NRKVLTLVGDDEQDASKGLIG 143 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+PIA+AL G +GD+ V P G+K +EI+ + Sbjct: 144 WSAPIAKALRGSRVGDLRIVRLPSGQKEWEIMAI 177 >gi|300311440|ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] gi|300074225|gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +I+ EL EERP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D+I FGATV+ E G+ IVG E D G +S SP Sbjct: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTY-ENQRGEAHTVTIVGIDELDPLKGRISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL GD + + P G + IL+V + Sbjct: 150 VARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 >gi|225420455|ref|ZP_03762758.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme DSM 15981] gi|225040905|gb|EEG51151.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 1/127 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 + +E+ R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ LE +I A+ Sbjct: 1 MMEEIEHRKLVVRRECLEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYLERMIKTAK 60 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 +I + S D + TV + + + Y+IV + GL+SI SP+ +AL+G + Sbjct: 61 IISDKS-SSDEVGLNDTVEVYIPEDDETERYKIVTTVRGNSLKGLISIDSPLGKALLGHK 119 Query: 135 LGDIISV 141 G+ + V Sbjct: 120 AGETVYV 126 >gi|288957371|ref|YP_003447712.1| transcription elongation factor [Azospirillum sp. B510] gi|288909679|dbj|BAI71168.1| transcription elongation factor [Azospirillum sp. B510] Length = 183 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF ++Q+ELR + ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 31 MTPPGFQRMQEELRHLLRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V++ +++ FGATV+ + G + IVG E D G VS SP Sbjct: 91 NKRLESAVVVNPQDQKNREQVFFGATVTYA-REDGSENTVTIVGADEVDPDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ GD++ V P G + E+L++ + Sbjct: 150 IARALLKAREGDMVDVRTPAGMEQVEVLEIRY 181 >gi|322804996|emb|CBZ02556.1| transcription elongation factor GreA [Clostridium botulinum H04402 065] Length = 154 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVSISS 124 +I+ A VID + D+ G K D + N +V +A+ + L+S+ S Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDAEPEKMLISVES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 123 DLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|144898302|emb|CAM75166.1| Prokaryotic transcription elongation factor GreA/GreB [Magnetospirillum gryphiswaldense MSR-1] Length = 180 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G + +EL + ERPRI++ +S A GD SEN +Y K+ + R+ L Sbjct: 27 VTPQGHRALIEELDQLWRVERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 86 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +EV+ + R+ FGATV+ E++ ++K +VG EAD+ G VS SP Sbjct: 87 RKRIENSEVVAPELQTDRSRVYFGATVTYAEEDGAERK-VTLVGVDEADINHGKVSWVSP 145 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARAL+ E+GD + + +P G + E++ + ++ Sbjct: 146 VARALLRAEVGDTVIIRSPTGRREIEVVAIEYL 178 >gi|170720942|ref|YP_001748630.1| transcription elongation factor GreB [Pseudomonas putida W619] gi|169758945|gb|ACA72261.1| transcription elongation factor GreB [Pseudomonas putida W619] Length = 157 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPQQEGKVFFGAWVE-IENDDGETLKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEKGDEVVVHTPTGEATWYV 150 >gi|212716148|ref|ZP_03324276.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM 16992] gi|225351851|ref|ZP_03742874.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212661515|gb|EEB22090.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM 16992] gi|225157098|gb|EEG70437.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 159 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+ EL Sbjct: 9 LTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRIEEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + A++ ++ + G+ V+L + ++ ++G ++ + + ++S S Sbjct: 69 TVKLRNAKI--LTAPKAGEVGDGSLVTL---DVNGREMVYVLGTRDLSIATDYSIISPES 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+ G GD +S AP G Sbjct: 124 PIGAAINGAHEGDTVSYTAPNG 145 >gi|167032925|ref|YP_001668156.1| transcription elongation factor GreB [Pseudomonas putida GB-1] gi|166859413|gb|ABY97820.1| transcription elongation factor GreB [Pseudomonas putida GB-1] Length = 156 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPQQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150 >gi|188990994|ref|YP_001903004.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. B100] gi|167732754|emb|CAP50948.1| greB [Xanthomonas campestris pv. campestris] Length = 168 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDELWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA + L + +SG+ Y+IVG E D SG +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDPQAVFFGAQIELEDADSGELLRYRIVGPDETDAGSGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFEAQLPSGKHTFVVVVV 163 >gi|119025670|ref|YP_909515.1| transcription elongation factor GreA [Bifidobacterium adolescentis ATCC 15703] gi|154487515|ref|ZP_02028922.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis L2-32] gi|118765254|dbj|BAF39433.1| transcription elongation factor GreA [Bifidobacterium adolescentis ATCC 15703] gi|154084033|gb|EDN83078.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis L2-32] Length = 159 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 7/144 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+ Sbjct: 7 ILLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRID 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122 EL + A++ ++ + G+ V+L E N ++ ++G ++ + + ++S Sbjct: 67 ELTVKLRNAKI--LTAPKAGEVGDGSLVTL-EVNG--REMVYVLGTRDLSIATDYSIISP 121 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SPI A+ G GD ++ AP G Sbjct: 122 ESPIGAAINGAHAGDTVTYTAPNG 145 >gi|90416385|ref|ZP_01224317.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2207] gi|90332110|gb|EAS47324.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2207] Length = 165 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 81/149 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ E+ + ERP++ + EA GD SEN +Y K + R+ L Sbjct: 15 ITPEGASKMRAEVHQLWKVERPKVTHIVHEAAKNGDRSENGDYIYGKRRLREIDSRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I A +++ ++ F A V++ +++SG++ Y++VG E D +SI SP+ Sbjct: 75 TKRIEDATIVEDKPRDPSKVFFAAWVTVEDEDSGEEHIYRLVGSDEIDSALNWISIDSPM 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK + D ++V P G++ I ++ Sbjct: 135 ARALVGKSIDDEVNVKTPAGDRCLIITEI 163 >gi|331087098|ref|ZP_08336171.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409187|gb|EGG88638.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 167 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+++ + D + TV L + + + +++V + GL+S SPI Sbjct: 65 ERMIKTAKIVSDESKE-DEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + ++GK+ GD + + G Y +++ Sbjct: 124 GKVILGKKAGDRVFIRVSGDAGYYVVIK 151 >gi|152981655|ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] gi|151281732|gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] Length = 183 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 5 IPVTSKGFDKIQQELRWRQQ------EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 IP +K + Q LR + + ERP +++ +S A + GD SEN +Y K Sbjct: 21 IPAGAKNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQ 80 Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 +GR+ L + AEV+D S G D+I FGATV E +GD+ I+G E D + Sbjct: 81 IDGRIRFLTKRLDLAEVVDPSIHHGSDQIFFGATVRY-ETQAGDEHTVTILGIDELDPLN 139 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +S SP+ARAL GD + + PGG + IL+V + Sbjct: 140 GKISWISPVARALTKAREGDTVVLKTPGGLEELLILEVTY 179 >gi|307730694|ref|YP_003907918.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307585229|gb|ADN58627.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 206 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 49 ITPAGYRRMRDELLQLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 108 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 109 TKRLDLAEVVDSSKQENVDQVFFGATVEYATED-GEEHTVTIVGIDEVDLDIGHVSWISP 167 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IARAL+ ++GD +++ P G + +IL V Sbjct: 168 IARALLKGKVGDTVTLYTPAGPQPIDILDV 197 >gi|226951512|ref|ZP_03821976.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244] gi|226837748|gb|EEH70131.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244] Length = 158 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRTGHDLLVAELKRLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D ++ FGA V +E +G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENEAGEQKILRIVGVDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K++ D + V+ P G+K + I Sbjct: 125 MARALLTKQVDDEVEVHTPLGKKVWYI 151 >gi|85060298|ref|YP_456000.1| transcription elongation factor GreB [Sodalis glossinidius str. 'morsitans'] gi|84780818|dbj|BAE75595.1| transcription elongation factor GreB [Sodalis glossinidius str. 'morsitans'] Length = 155 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++Q EL + RP I + ++ A + GD SENA+Y K++ + R+ L Sbjct: 6 ITRQGYQELQDELDHLWKRYRPEITEKVAWAASLGDRSENADYHYNKKILREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ A V+D S RI FGA V VE G+ K ++I G E +SI SP+ Sbjct: 66 RRVLKEARVVDYSPQQEGRIFFGAWVE-VENAEGETKRFRIAGPDEIYKHKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARALI K + D V PGG +T+ I Sbjct: 125 ARALIKKAVDDEAEVVTPGGHRTWYI 150 >gi|269925131|ref|YP_003321754.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC BAA-798] gi|269788791|gb|ACZ40932.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC BAA-798] Length = 159 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 5/156 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G ++++EL + ER +I I EA+ GD+SE+ EY+ AK Q EGR Sbjct: 5 ERVRLTEQGLKELREELERLRTVERAKISARIREAKEGGDISESGEYEDAKHSQAFLEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLVS 121 + ELE ++ AEVID S + G+ V+ VE+N G Y IV EA + G V Sbjct: 65 IKELEKLLANAEVIDRSAQPAGTVGLGSKVT-VEEN-GRTYTYTIVDGAEAGRGRDGEVR 122 Query: 122 IS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS S + AL+G+ +GD + V P G+ T++IL V Sbjct: 123 ISSKSAVGSALLGRRVGDSVEVEVPAGKLTFKILSV 158 >gi|294651152|ref|ZP_06728486.1| transcription elongation factor GreB [Acinetobacter haemolyticus ATCC 19194] gi|292822948|gb|EFF81817.1| transcription elongation factor GreB [Acinetobacter haemolyticus ATCC 19194] Length = 158 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D ++ FGA V +E +G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENEAGEQKILRIVGIDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K++ D + V+ P G+K + I Sbjct: 125 MARALLTKQVDDEVEVHTPLGKKVWYI 151 >gi|73542156|ref|YP_296676.1| transcription elongation factor GreB [Ralstonia eutropha JMP134] gi|72119569|gb|AAZ61832.1| transcription elongation factor GreB [Ralstonia eutropha JMP134] Length = 188 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITADGYNRLRNELMHLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +AEV+D S D+I FGATV+ + SG++ IVG E D+ + VS SP Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDTNHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ALI GD +++ P G + +IL V + Sbjct: 151 IAKALIKAREGDTVALRTPAGVEQIDILDVSY 182 >gi|240047822|ref|YP_002961210.1| transcription elongation factor GreA [Mycoplasma conjunctivae HRC/581] gi|239985394|emb|CAT05407.1| Transcription elongation factor [Mycoplasma conjunctivae] Length = 161 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 2/142 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T + ++++QEL ER +I+ I AR GDLSENAEY AA+E Q + E R Sbjct: 7 NQILLTKEKLEELKQELNNLINIERNNVIEEIKYARQQGDLSENAEYDAAREKQGVIESR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS 121 + EL+ IIT+A++I +T S I+ G+ V++ + +QIVG +AD +S Sbjct: 67 IRELDAIITKAQIIRTNTGSSS-ISVGSKVTIENLKNNKINTFQIVGSSIDADPFQNKIS 125 Query: 122 ISSPIARALIGKELGDIISVNA 143 ISS A+A++G+ GD + V+ Sbjct: 126 ISSAFAQAIMGQHEGDELDVDT 147 >gi|240147556|ref|ZP_04746157.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|257200241|gb|EEU98525.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|291538590|emb|CBL11701.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4] Length = 167 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VI + + D + TV++ + +++ Y++V + L+S SP+ Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKLVTTVRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISV 141 +AL+G ++GD + V Sbjct: 124 GKALLGHKVGDRVEV 138 >gi|262371975|ref|ZP_06065254.1| transcription elongation factor GreB [Acinetobacter junii SH205] gi|262312000|gb|EEY93085.1| transcription elongation factor GreB [Acinetobacter junii SH205] Length = 162 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 + +++D ++ FGA V +E ++G++K +IVG D+ D +SI SP Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENDAGEQKTLRIVGVDEIYDHHPQHISIESP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+ K++ D + V P G+K + I Sbjct: 125 MARALLSKQVDDEVEVITPLGKKLWYI 151 >gi|34498839|ref|NP_903054.1| transcription elongation factor GreB [Chromobacterium violaceum ATCC 12472] gi|34104691|gb|AAQ61048.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] Length = 184 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 30 ITPMGWQRLKDELYHLVNRERPEIVQVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D D++ F ATV L+++ G ++ IVG E D+Q G +S SP Sbjct: 90 TKRLEIAEVVDPEAREATDQVFFSATV-LIQRGDGSEQRLSIVGVDEIDLQRGRISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARAL+ GD + P G++ E+L+V ++ Sbjct: 149 IARALLKSREGDTVLFRGPDGDEDIEVLEVSYV 181 >gi|222110079|ref|YP_002552343.1| transcription elongation factor greb [Acidovorax ebreus TPSY] gi|221729523|gb|ACM32343.1| transcription elongation factor GreB [Acidovorax ebreus TPSY] Length = 186 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S SP Sbjct: 90 TKRLEIADVVDPSVHTGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ GD +++ P G +T EIL+V Sbjct: 149 VARALLKAREGDEVTLQTPAGLRTLEILRV 178 >gi|167837497|ref|ZP_02464380.1| transcription elongation factor GreB [Burkholderia thailandensis MSMB43] Length = 187 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEERPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G + ++L V + Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|167581001|ref|ZP_02373875.1| transcription elongation factor GreB [Burkholderia thailandensis TXDOH] Length = 187 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ +GD +++ P G + ++L V + Sbjct: 150 IARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|254480189|ref|ZP_05093437.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2148] gi|214039751|gb|EEB80410.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2148] Length = 165 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL + ERP I + EA GD SEN +Y K + R+ L Sbjct: 15 ITPEGEKALRDELHQLWKVERPVITNTVHEAAKNGDRSENGDYIYGKRRLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + EV++ S +I FGA V+L E G + ++IVG E ++++G +S+ SP+ Sbjct: 75 NKRLDELEVVERSPDDTSKIRFGAWVTL-ETEDGQEHRWRIVGPDEFELKTGKLSMDSPM 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR+++GK L D + V +P GE+ Y ++ + Sbjct: 134 ARSMLGKGLDDEVVVQSPSGEQVYYVVGI 162 >gi|115374183|ref|ZP_01461470.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] gi|115368850|gb|EAU67798.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] Length = 144 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 2/134 (1%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD- 84 ERP++ +S A A GD SENAEY K+ + R+ L+ + A ++ + + Sbjct: 12 ERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIVTPAEQTDQG 71 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R+ FGATV+L E G + YQIVG E D Q G +S+ SPI +AL+ K +GD + V P Sbjct: 72 RVYFGATVTL-EDEDGVQTTYQIVGSDEIDTQGGRISVESPIGKALLRKAVGDSVEVMRP 130 Query: 145 GGEKTYEILQVLWI 158 GE I+ + ++ Sbjct: 131 RGEIELTIVAIAYM 144 >gi|320528378|ref|ZP_08029540.1| putative transcription elongation factor GreA [Solobacterium moorei F0204] gi|320131292|gb|EFW23860.1| putative transcription elongation factor GreA [Solobacterium moorei F0204] Length = 158 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G K+Q E R + + ++EARA GDLSENA+Y AA++ Q E R Sbjct: 5 NKTYLTEEGLKKLQDEYYNLVHVVREEVKQELAEARAQGDLSENADYDAARDEQAKVEAR 64 Query: 63 MAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +A LE ++ E+ID + +G + + G++V+L ++ ++ Y IVG E+D +G + Sbjct: 65 IATLEYMLRNYELID-TKKAGKKSAVHIGSSVTLFFNDTKEEVTYNIVGSTESDPLNGRL 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S +P+A+A++ ++GD+ V T EI+++ Sbjct: 124 SNETPLAQAILDHKVGDVCEVRV-ANPYTVEIIKI 157 >gi|264679927|ref|YP_003279836.1| Kelongation factor GreB [Comamonas testosteroni CNB-2] gi|262210442|gb|ACY34540.1| Kelongation factor GreB [Comamonas testosteroni CNB-2] Length = 231 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L Sbjct: 74 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 133 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS +P Sbjct: 134 TKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 192 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++RAL+ +GD +++ P G + EIL V + Sbjct: 193 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 224 >gi|115350916|ref|YP_772755.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD] gi|170698517|ref|ZP_02889588.1| transcription elongation factor GreB [Burkholderia ambifaria IOP40-10] gi|171315539|ref|ZP_02904775.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5] gi|172059929|ref|YP_001807581.1| transcription elongation factor GreB [Burkholderia ambifaria MC40-6] gi|115280904|gb|ABI86421.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD] gi|170136601|gb|EDT04858.1| transcription elongation factor GreB [Burkholderia ambifaria IOP40-10] gi|171099376|gb|EDT44114.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5] gi|171992446|gb|ACB63365.1| transcription elongation factor GreB [Burkholderia ambifaria MC40-6] Length = 187 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV + G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDHGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI ++GD +++ P G + ++L V + Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|325955918|ref|YP_004286528.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|325332483|gb|ADZ06391.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|327182753|gb|AEA31200.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1118] Length = 143 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 13/149 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R ++ RPR IK + ARA GDLSEN EY AK L Sbjct: 7 MTPEGYKQIEDEI-ARLKKGRPRRIKILQAARALGDLSENTEYTEAKRY----------L 55 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E+++ T ++ G TV L + D + Y+IVG EAD+ G +S SP+ Sbjct: 56 GKQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G +V AP GE I++V Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEV 142 >gi|261337288|ref|ZP_05965172.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM 20093] gi|270277656|gb|EFA23510.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM 20093] Length = 161 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T DK+Q+EL WRQ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ EL Sbjct: 12 LTQDAVDKLQEELTWRQGEYRDEITERIAAARAEGDLSENGGYQAAREEQGKNEGRINEL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + A++I+ + G+ V++ + G + ++G ++ V + + +S S Sbjct: 72 IVKLRNAKIIEAPEAG--VVGNGSVVTI---DLGGNEMTYVIGSRDIAVATDIDVISPDS 126 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ A++G ++GD +S P G Sbjct: 127 PVGAAIMGAKVGDTVSYTLPNG 148 >gi|221065450|ref|ZP_03541555.1| transcription elongation factor GreB [Comamonas testosteroni KF-1] gi|220710473|gb|EED65841.1| transcription elongation factor GreB [Comamonas testosteroni KF-1] Length = 188 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L Sbjct: 31 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS +P Sbjct: 91 TKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++RAL+ +GD +++ P G + EIL V + Sbjct: 150 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 181 >gi|75761030|ref|ZP_00741032.1| Transcription elongation factor greA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491486|gb|EAO54700.1| Transcription elongation factor greA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 151 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 69/116 (59%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ + Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S Sbjct: 85 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRIS 140 >gi|134295030|ref|YP_001118765.1| transcription elongation factor GreB [Burkholderia vietnamiensis G4] gi|134138187|gb|ABO53930.1| transcription elongation factor GreB [Burkholderia vietnamiensis G4] Length = 187 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV + G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTVTIVGIDEVDLDRGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALI ++GD +++ P G + ++L V + Sbjct: 150 IARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|121593370|ref|YP_985266.1| transcription elongation factor GreB [Acidovorax sp. JS42] gi|120605450|gb|ABM41190.1| transcription elongation factor GreB [Acidovorax sp. JS42] Length = 186 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S SP Sbjct: 90 TKRLEIADVVDPSVHAGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ GD +++ P G +T EIL+V Sbjct: 149 VARALLKAREGDEVTLQTPAGLRTLEILRV 178 >gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM 16041] gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM 16041] Length = 168 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ +I+ E+ R Q +RP I+ + ARA GDLSEN EY AK EL++L E R+ Sbjct: 18 MTRAGYQEIEDEI-ARLQAQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE+I + + + G +V+L ++ D Y+IVG QEAD+ V+ SP Sbjct: 76 LNKQLQYAEII--APTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQKVAFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +A++ + G ++V AP I+++ Sbjct: 134 LGQAIMHQRAGTTVTVQAPQAPYQVTIIKI 163 >gi|270308083|ref|YP_003330141.1| transcription elongation factor [Dehalococcoides sp. VS] gi|270153975|gb|ACZ61813.1| transcription elongation factor [Dehalococcoides sp. VS] Length = 265 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDELSTLKGK-RIEVIEEMRLAAMDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G+ Y +V +E + G +S Sbjct: 170 RIKEIEHELKYAEVSEYTDNNTSKVNMGNTVKLRDLKNGECCTYTLVSPKEIEPLKGKIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTY 150 SSPI +A+ + G+ I + P G Y Sbjct: 230 ASSPIGKAVFNRNKGEQIEIEVPSGTLQY 258 >gi|312874044|ref|ZP_07734079.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|329920936|ref|ZP_08277485.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] gi|311090384|gb|EFQ48793.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|328935501|gb|EGG31972.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] Length = 153 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ + + I G+ V + ++ + + Y IVG EADV +S SP+ Sbjct: 66 NKQLQYAQIVQKN--NDGMIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+ K+ GD++ VNAP G I+ V Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152 >gi|255523780|ref|ZP_05390745.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255512483|gb|EET88758.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 154 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 84/150 (56%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + DK+++EL +R +R +I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTQENIDKLKEELDYRMTVKRAQIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A V+D + I + + + D++ +V +AD ++ L+S+ S + Sbjct: 65 LTMISTAIVVDDKSQDKSVIGVNSKFKIKFVDDEDEEVVSLVTTVDADPENMLISVESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+ K+ GDI+ VNAP T EIL++L Sbjct: 125 GKALMSKKAGDIVEVNAPSENYTVEILEIL 154 >gi|183601464|ref|ZP_02962834.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis HN019] gi|219683518|ref|YP_002469901.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis AD011] gi|241191036|ref|YP_002968430.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196442|ref|YP_002969997.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219070|gb|EDT89711.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis HN019] gi|219621168|gb|ACL29325.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis AD011] gi|240249428|gb|ACS46368.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250996|gb|ACS47935.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794025|gb|ADG33560.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis V9] Length = 160 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 91/142 (64%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 10 LTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRINEL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + A++I+ + +G+ + G+ V++ + G++ Y ++G ++ V + ++S S Sbjct: 70 IVKLRNAKIIE-APKAGE-VGNGSLVTI--ELGGNEMQY-VIGSRDITVATDYDVISPES 124 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+IG ++GD+++ AP G Sbjct: 125 PIGGAIIGHKVGDVVTYKAPNG 146 >gi|315185942|gb|EFU19706.1| transcription elongation factor GreA [Spirochaeta thermophila DSM 6578] Length = 898 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 2/147 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + + Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ + RA+++ + +I+FG V+L+ + + ++ Y I+G E++ G++S S Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNEETKKRETYVILGPWESNPDKGIISYLS 861 Query: 125 PIARALIGKELGDIISVNAPGGEKTYE 151 P L G + G+ + E+TY Sbjct: 862 PFGSELYGHKEGEELEFTI--NERTYH 886 >gi|313499599|gb|ADR60965.1| GreB [Pseudomonas putida BIRD-1] Length = 162 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150 >gi|171743230|ref|ZP_02919037.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC 27678] gi|283455792|ref|YP_003360356.1| transcription elongation factor GreA [Bifidobacterium dentium Bd1] gi|306823073|ref|ZP_07456449.1| possible transcription elongation factor GreA [Bifidobacterium dentium ATCC 27679] gi|309801121|ref|ZP_07695250.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|171278844|gb|EDT46505.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC 27678] gi|283102426|gb|ADB09532.1| Transcription elongation factor GreA [Bifidobacterium dentium Bd1] gi|304553705|gb|EFM41616.1| possible transcription elongation factor GreA [Bifidobacterium dentium ATCC 27679] gi|308222010|gb|EFO78293.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 159 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+ EL Sbjct: 9 LTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRIDEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + A+++ + G+ + G+ V+L E N ++ ++G ++ + + ++S S Sbjct: 69 TVKLRNAKIL-TAPKEGE-VGDGSVVTL-ELNG--RELVYVLGTRDLSIATDYDIISPES 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+ G GD +S AP G Sbjct: 124 PIGAAINGAHAGDTVSYTAPNG 145 >gi|313678570|ref|YP_004056310.1| transcription elongation factor GreA [Mycoplasma bovis PG45] gi|312950163|gb|ADR24758.1| transcription elongation factor GreA [Mycoplasma bovis PG45] Length = 163 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ AE+ID + ++ GATV + + + I+G +++ +S Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVKYLNMKTNKELVVTIMGPHDSNPIENKISN 126 Query: 123 SSPIARALI-GKELGDIISVNAP 144 SP+A+A++ +GD++ V P Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVP 149 >gi|312795407|ref|YP_004028329.1| transcription elongation factor greB [Burkholderia rhizoxinica HKI 454] gi|312167182|emb|CBW74185.1| Transcription elongation factor greB [Burkholderia rhizoxinica HKI 454] Length = 186 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 MTPEGYRRLKDELLQLIDVERPEVVRMVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV + G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDSSRQENTDQVFFGATVHYATSD-GAENQITIVGVDEVDLDRGRVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ +GD + ++ PGG + +IL V + Sbjct: 150 IARALLKARIGDTVPLHTPGGIEQIDILDVHY 181 >gi|78065582|ref|YP_368351.1| transcription elongation factor GreB [Burkholderia sp. 383] gi|77966327|gb|ABB07707.1| transcription elongation factor GreB [Burkholderia sp. 383] Length = 187 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV E G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTITIVGIDEVDLDHGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI ++GD + + P G + ++L V + Sbjct: 150 VARALIKAKIGDTVMLMTPAGPQPIDVLDVRY 181 >gi|26989039|ref|NP_744464.1| transcription elongation factor GreB [Pseudomonas putida KT2440] gi|37999626|sp|Q88KH5|GREB_PSEPK RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|24983864|gb|AAN67928.1|AE016425_5 transcription elongation factor GreB [Pseudomonas putida KT2440] Length = 162 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE GD + V+ P GE T+ + Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150 >gi|302878073|ref|YP_003846637.1| transcription elongation factor GreB [Gallionella capsiferriformans ES-2] gi|302580862|gb|ADL54873.1| transcription elongation factor GreB [Gallionella capsiferriformans ES-2] Length = 178 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K+Q EL + ERP ++ I+ A + GD SEN +Y K + R+ L Sbjct: 24 ITPGGHQKLQTELEQLWKVERPVLVNTITWAASNGDRSENGDYIYGKRRLREIDRRVRFL 83 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +AEV+D + + +++ FGATV+ V G + Y IVG EAD+ G +S SP Sbjct: 84 HKRLEQAEVVDPAKRGACEQVFFGATVT-VGHEDGSEATYAIVGVDEADLTRGHISWVSP 142 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR L+ GD+ + P G E+L+V ++ Sbjct: 143 LARTLLKLHEGDVARLMTPAGIVELEVLRVCYL 175 >gi|224826318|ref|ZP_03699420.1| transcription elongation factor GreB [Lutiella nitroferrum 2002] gi|224601419|gb|EEG07600.1| transcription elongation factor GreB [Lutiella nitroferrum 2002] Length = 185 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL ERP ++ ++ A + GD SEN +Y K + R+ L Sbjct: 31 LTPQGWQRLKNELYHLVHRERPEMVNVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D T + D+I F ATV L+ + G ++ +IVG E D+ G +S SP Sbjct: 91 TKRLEIAEVVDPETRETTDQIFFSATV-LILRGDGSEQLLRIVGVDEIDLPRGHISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IAR LI GD + P GE+T E+L+V + Sbjct: 150 IARCLIKAREGDEVVFRGPDGEETIEVLEVRY 181 >gi|88706726|ref|ZP_01104428.1| Transcription elongation factor greB [Congregibacter litoralis KT71] gi|88699047|gb|EAQ96164.1| Transcription elongation factor greB [Congregibacter litoralis KT71] Length = 185 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 5/154 (3%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T+ G +++ EL WRQ ERP + A+ +A GD SEN +Y K+ + R+ Sbjct: 15 ITAAGEARLRAELDRLWRQ--ERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + + +V+ RI FGATV VE + +I+G E + G VSI + Sbjct: 73 FISKRLEVLQVVREPPTDRTRIFFGATVE-VEDQHAVSRTIRILGPDEFESSRGEVSIDA 131 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARAL+GK +GD +++ +PGG + E+L V ++ Sbjct: 132 PIARALLGKSVGDCVNLESPGGLRELEVLAVSYL 165 >gi|15895695|ref|NP_349044.1| transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|15025446|gb|AAK80384.1|AE007743_6 Transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|325509845|gb|ADZ21481.1| Transcription elongation factor, greA [Clostridium acetobutylicum EA 2018] Length = 154 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G K+++EL + + +R I +A+ AR+ GDLSENA+Y AAK+ Q++NE Sbjct: 1 MSSKI-LTESGKKKLEEELEYLKTVKRAEIKEALKFARSQGDLSENADYSAAKDDQSMNE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+I+ V++ S+ + + + ++ + + +V E+D+++ V Sbjct: 60 TRIQEIEDILKSCTVVE-SSENENVFDLNKKALVKFCDTDETEEVTLVSSVESDIKNMKV 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI SP+ +AL EL V +P G E+L++L Sbjct: 119 SIDSPLGKALYKSELNKRTLVQSPDGSYEVEVLKIL 154 >gi|330993418|ref|ZP_08317353.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1] gi|329759448|gb|EGG75957.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1] Length = 178 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++ EL ++ERP+I++ +S A GD SEN +YQ K + R+ L Sbjct: 24 VTPAGIAVMRAELNALLRDERPKIVEIVSWAAGNGDRSENGDYQYGKRRLREIDRRIRFL 83 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I A V+D + R+ FGATV+ V + +++ I+G EAD+ +G +S+ SP Sbjct: 84 TKRIDNAVVVDPAAQPQRGRVFFGATVTYVTERD-EERTVTILGVDEADMAAGQISLVSP 142 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD + + P GE+ E+L + + Sbjct: 143 VARALMRAAVGDEVRLATPRGEEMIEVLAISY 174 >gi|114328469|ref|YP_745626.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] gi|114316643|gb|ABI62703.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] Length = 169 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ +EERP+I++ +S A GD SEN +Y K+ + R+ L Sbjct: 15 MTPVGHAQMVAELKQLMREERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 74 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISS 124 + A VID +T DRI FGATV+ + N+ D+ IVG EAD+ G +S+ S Sbjct: 75 TKRLENAVVIDPATQPHKDRIYFGATVTYI--NAADETVQVTIVGADEADMALGRISLLS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A+AL+G GD ++V P + +IL V Sbjct: 133 PVAKALLGASKGDEVTVITPVKTEILDILDV 163 >gi|161525566|ref|YP_001580578.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|189349706|ref|YP_001945334.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|221201206|ref|ZP_03574246.1| transcription elongation factor GreB [Burkholderia multivorans CGD2M] gi|221206340|ref|ZP_03579353.1| transcription elongation factor GreB [Burkholderia multivorans CGD2] gi|221213620|ref|ZP_03586594.1| transcription elongation factor GreB [Burkholderia multivorans CGD1] gi|160342995|gb|ABX16081.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|189333728|dbj|BAG42798.1| transcription elongation factor [Burkholderia multivorans ATCC 17616] gi|221166409|gb|EED98881.1| transcription elongation factor GreB [Burkholderia multivorans CGD1] gi|221173649|gb|EEE06083.1| transcription elongation factor GreB [Burkholderia multivorans CGD2] gi|221179056|gb|EEE11463.1| transcription elongation factor GreB [Burkholderia multivorans CGD2M] Length = 187 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV + G++ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDRGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI +GD +++ P G + ++L V + Sbjct: 150 VARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|299529934|ref|ZP_07043362.1| Kelongation factor GreB [Comamonas testosteroni S44] gi|298722106|gb|EFI63035.1| Kelongation factor GreB [Comamonas testosteroni S44] Length = 188 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L Sbjct: 31 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D +G D++ FGATVS V+ + G ++ I+G EAD VS +P Sbjct: 91 TKRLEIAEVVDPGVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++RAL+ +GD +++ P G + EIL V + Sbjct: 150 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 181 >gi|309809127|ref|ZP_07703000.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|308170572|gb|EFO72592.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] Length = 153 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ + I G+ V + ++ + + Y IVG EADV +S SP+ Sbjct: 66 NKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+ K+ GD++ VNAP G I+ V Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152 >gi|196231612|ref|ZP_03130470.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] gi|196224465|gb|EDY18977.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] Length = 609 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 70/125 (56%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P +K I AR+YGDL EN E++AAKE+Q + R AE E + +A D + +++ Sbjct: 477 PENVKEIQVARSYGDLRENFEFKAAKEMQRVLSRRRAETERDLAQARGTDFANPDTAQVS 536 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G V+L E G Y I+G + D G+VS S +A+ALIG + G+ ++V G+ Sbjct: 537 VGTIVTLKETGDGRTDVYTILGAWDGDPDKGIVSYQSALAQALIGHKPGEQVNVPTEHGD 596 Query: 148 KTYEI 152 +T I Sbjct: 597 RTARI 601 >gi|227545317|ref|ZP_03975366.1| transcription elongation factor [Lactobacillus reuteri CF48-3A] gi|300908606|ref|ZP_07126069.1| transcription elongation factor [Lactobacillus reuteri SD2112] gi|227184713|gb|EEI64784.1| transcription elongation factor [Lactobacillus reuteri CF48-3A] gi|300894013|gb|EFK87371.1| transcription elongation factor [Lactobacillus reuteri SD2112] Length = 192 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 7/151 (4%) Query: 7 VTSKGFDKIQQEL-RWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMA 64 +T+ G+ +I++++ + +QQ RP I + ARA GDLSEN EY AK EL++L E R+ Sbjct: 45 MTANGYHEIEEQIAKLKQQ--RPAKIGQLKAARALGDLSENTEYSTAKRELRHL-ESRLR 101 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE++ + + I G TV + ++ +++ Y IVG QEAD+ +S S Sbjct: 102 YLNKQLQYAEIV--TPKNDHTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDS 159 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +AL+ K G ++V AP +I+++ Sbjct: 160 PLGQALLHKTAGITVTVEAPQSSYKVKIVKI 190 >gi|148377651|ref|YP_001256527.1| transcription elongation factor greA [Mycoplasma agalactiae PG2] gi|291320341|ref|YP_003515603.1| transcription elongation factor greA [Mycoplasma agalactiae] gi|259647749|sp|A5IYH4|GREA_MYCAP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148291697|emb|CAL59083.1| Transcription elongation factor greA [Mycoplasma agalactiae PG2] gi|290752674|emb|CBH40647.1| Transcription elongation factor greA [Mycoplasma agalactiae] Length = 163 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ AE+ID + ++ GATV + + + I+G +++ +S Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISN 126 Query: 123 SSPIARALI-GKELGDIISVNAP 144 SP+A+A++ +GD++ V P Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVP 149 >gi|152002511|dbj|BAF73535.1| transcription elongation factor [Onion yellows phytoplasma OY-W] Length = 156 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 3/147 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G K+++EL + ++ +R ++A+ E R GDLSENA+Y AA+ Q L Sbjct: 1 MNNKIYELTQSGIKKLKKELTFLKEVKRKENLEALKEEREQGDLSENADYDAARNEQTLI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 61 EHRISEIQNILKNVRVVKVSKER--EVSIGKKVSLELLHTKQQQEIELVSTLEADPFANK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 +SI SP+ + + G ++GD++ V G Sbjct: 119 ISIESPLGQNIKGHQIGDVVFVTGETG 145 >gi|332528408|ref|ZP_08404400.1| transcription elongation factor [Hylemonella gracilis ATCC 19624] gi|332042087|gb|EGI78421.1| transcription elongation factor [Hylemonella gracilis ATCC 19624] Length = 185 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL EERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPAGYARLRAELMQLIDEERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D++ FGATV+ + +G ++ I+G EAD G VS SP Sbjct: 90 TKRLEIAEVADPSVHHGSDQVFFGATVTYAD-GAGVERTITILGIDEADNLRGQVSWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+ +GD++ + P G + E+L+V + Sbjct: 149 VARTLLKARVGDVLKLVTPAGVEEIEVLEVSY 180 >gi|289178779|gb|ADC86025.1| GreA [Bifidobacterium animalis subsp. lactis BB-12] Length = 203 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 91/142 (64%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 53 LTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRINEL 112 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + A++I+ + +G+ + G+ V++ + G++ Y ++G ++ V + ++S S Sbjct: 113 IVKLRNAKIIE-APKAGE-VGNGSLVTI--ELGGNEMQY-VIGSRDITVATDYDVISPES 167 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+IG ++GD+++ AP G Sbjct: 168 PIGGAIIGHKVGDVVTYKAPNG 189 >gi|21231994|ref|NP_637911.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767879|ref|YP_242641.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. 8004] gi|25452985|sp|Q8P7P8|GREB_XANCP RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21113729|gb|AAM41835.1| transcription elongation factor and transcript cleavage [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573211|gb|AAY48621.1| transcription elongation factor and transcript cleavage [Xanthomonas campestris pv. campestris str. 8004] Length = 168 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDELWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+D + + FGA V L + +SG+ Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D P G+ T+ ++ V Sbjct: 133 PLARALLKKRVDDEFEAQLPSGKHTFVVVVV 163 >gi|325283061|ref|YP_004255602.1| transcription elongation factor GreA [Deinococcus proteolyticus MRP] gi|324314870|gb|ADY25985.1| transcription elongation factor GreA [Deinococcus proteolyticus MRP] Length = 155 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 6/155 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KI +T +G+D++++ L + R +I + + A GDL E+A Y A+ Q+ NE R+ Sbjct: 5 KISITQRGYDRLKETLHHLKTTRREQISENMGRAIEDGDLRESAAYDEARMEQSENEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQSGLVSI 122 +LE+ + RA +++ D + V+ SG ++ +++VG EADV++G VS Sbjct: 65 RDLEDQLERAVIVE-----EDAGGGAGLGAKVKVRSGKTERTFELVGTFEADVRAGKVSD 119 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPI +AL+G G + V P G+ +E+L+V + Sbjct: 120 ASPIGQALLGAREGAKVKVPGPKGDMEFEVLEVTY 154 >gi|259500870|ref|ZP_05743772.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|302190677|ref|ZP_07266931.1| transcription elongation factor GreA [Lactobacillus iners AB-1] gi|309803670|ref|ZP_07697760.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|309805761|ref|ZP_07699798.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|312874748|ref|ZP_07734767.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|315654050|ref|ZP_07906966.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|325912329|ref|ZP_08174726.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners UPII 143-D] gi|259167564|gb|EEW52059.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|308164268|gb|EFO66525.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308164881|gb|EFO67127.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|311089493|gb|EFQ47918.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|315488746|gb|EFU78392.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|325475988|gb|EGC79157.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners UPII 143-D] Length = 153 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ + + I G+ V + ++ + + Y IVG EADV +S SP+ Sbjct: 66 NKQLQYAQIVQKN--NDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+ K+ GD++ VNAP G I+ V Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152 >gi|182415840|ref|YP_001820906.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177843054|gb|ACB77306.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 616 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + L Sbjct: 460 VSKASYERKREEYETIVSKKIPENSKAIAAAREHGDLRENSEYKMAKQEQQVLMAHKTNL 519 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + RA + D S D+++ G V + G Y ++G + D + +S +P Sbjct: 520 ERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISYKTPF 579 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GK+ GD+I+V ++ Y I+ + Sbjct: 580 GAALLGKKTGDVINVKTDASDEDYAIVSI 608 >gi|186475439|ref|YP_001856909.1| transcription elongation factor GreB [Burkholderia phymatum STM815] gi|184191898|gb|ACC69863.1| transcription elongation factor GreB [Burkholderia phymatum STM815] Length = 190 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 32 ITPAGYRRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I AEV++ S + D++ FGATV ++ G+ +IVG E ++ G VS SP Sbjct: 92 TKRIDLAEVVNSSRQENTDQVFFGATVDYATED-GETHTVRIVGIDEVNLDEGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD ++++ P G + ++L V + Sbjct: 151 IARALLKAKVGDQVTLHTPAGPQPIDVLDVRY 182 >gi|194289080|ref|YP_002004987.1| transcription elongation factor greb [Cupriavidus taiwanensis LMG 19424] gi|193222915|emb|CAQ68920.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR) [Cupriavidus taiwanensis LMG 19424] Length = 187 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITAEGYARLRNELMQLIDVERPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +AEV+D S D+I FGATV+ SG++ IVG E D+ VS SP Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYAHA-SGEETTITIVGMDEVDLDHNHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+AL+ GD +++ P G + +IL+V + Sbjct: 151 IAKALLKAREGDTVALRTPAGVEQIDILEVRY 182 >gi|76810661|ref|YP_334421.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710b] gi|134280310|ref|ZP_01767021.1| transcription elongation factor GreB [Burkholderia pseudomallei 305] gi|167739719|ref|ZP_02412493.1| transcription elongation factor GreB [Burkholderia pseudomallei 14] gi|167825326|ref|ZP_02456797.1| transcription elongation factor GreB [Burkholderia pseudomallei 9] gi|167903804|ref|ZP_02491009.1| transcription elongation factor GreB [Burkholderia pseudomallei NCTC 13177] gi|217421177|ref|ZP_03452682.1| transcription elongation factor GreB [Burkholderia pseudomallei 576] gi|226193760|ref|ZP_03789362.1| transcription elongation factor GreB [Burkholderia pseudomallei Pakistan 9] gi|237813377|ref|YP_002897828.1| transcription elongation factor GreB [Burkholderia pseudomallei MSHR346] gi|254258154|ref|ZP_04949208.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710a] gi|76580114|gb|ABA49589.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710b] gi|134248317|gb|EBA48400.1| transcription elongation factor GreB [Burkholderia pseudomallei 305] gi|217396589|gb|EEC36606.1| transcription elongation factor GreB [Burkholderia pseudomallei 576] gi|225934065|gb|EEH30050.1| transcription elongation factor GreB [Burkholderia pseudomallei Pakistan 9] gi|237504521|gb|ACQ96839.1| transcription elongation factor GreB [Burkholderia pseudomallei MSHR346] gi|254216843|gb|EET06227.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710a] Length = 187 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G + ++L V + Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|116513443|ref|YP_812349.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092758|gb|ABJ57911.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125081|gb|ADY84411.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 153 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+ Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ AL+ + GD ++V AP G+ IL V Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVKAPMGDYEVTILSV 152 >gi|261823310|ref|YP_003261416.1| transcription elongation factor GreB [Pectobacterium wasabiae WPP163] gi|261607323|gb|ACX89809.1| transcription elongation factor GreB [Pectobacterium wasabiae WPP163] Length = 159 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYDKLRAEHEHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125 +T +++D S + FGA V +E GD K +IVG E S +SI SP Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDSKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARA++ K + + +VN P G + + + Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151 >gi|328955979|ref|YP_004373312.1| transcription elongation factor GreA [Coriobacterium glomerans PW2] gi|328456303|gb|AEB07497.1| transcription elongation factor GreA [Coriobacterium glomerans PW2] Length = 157 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 3/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T +G K+ EL WR+ I++ I AR +GDLSEN+EY AK+ Q N R Sbjct: 4 NEIVLTPEGRQKLVDELDWRETTLSKEIVERIKIARDFGDLSENSEYDDAKDEQAKNAAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E++ I+ A+ + +T ++ G++VSLV+ + G + +VG E + +S Sbjct: 64 IVEIQAILANAQEVK-ATGHSLTVSIGSSVSLVDAD-GVATDVSLVGTTETNSLEHKISN 121 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 SP+ A+IG+ G+ + V P G + Y I +V Sbjct: 122 ESPVGHAIIGRAEGETVEVTMPSGTVRAYTITKV 155 >gi|53720171|ref|YP_109157.1| transcription elongation factor GreB [Burkholderia pseudomallei K96243] gi|53726019|ref|YP_103667.1| transcription elongation factor GreB [Burkholderia mallei ATCC 23344] gi|67643934|ref|ZP_00442677.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse 4] gi|121600632|ref|YP_992161.1| transcription elongation factor GreB [Burkholderia mallei SAVP1] gi|124385438|ref|YP_001028606.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10229] gi|126440515|ref|YP_001059961.1| transcription elongation factor GreB [Burkholderia pseudomallei 668] gi|126450620|ref|YP_001081495.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10247] gi|126454976|ref|YP_001067253.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106a] gi|166998289|ref|ZP_02264149.1| transcription elongation factor GreB [Burkholderia mallei PRL-20] gi|167720736|ref|ZP_02403972.1| transcription elongation factor GreB [Burkholderia pseudomallei DM98] gi|167816923|ref|ZP_02448603.1| transcription elongation factor GreB [Burkholderia pseudomallei 91] gi|167846828|ref|ZP_02472336.1| transcription elongation factor GreB [Burkholderia pseudomallei B7210] gi|167912070|ref|ZP_02499161.1| transcription elongation factor GreB [Burkholderia pseudomallei 112] gi|167920044|ref|ZP_02507135.1| transcription elongation factor GreB [Burkholderia pseudomallei BCC215] gi|242316946|ref|ZP_04815962.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106b] gi|254175421|ref|ZP_04882081.1| transcription elongation factor GreB [Burkholderia mallei ATCC 10399] gi|254191879|ref|ZP_04898382.1| transcription elongation factor GreB [Burkholderia pseudomallei Pasteur 52237] gi|254196029|ref|ZP_04902454.1| transcription elongation factor GreB [Burkholderia pseudomallei S13] gi|254202365|ref|ZP_04908728.1| transcription elongation factor GreB [Burkholderia mallei FMH] gi|254207699|ref|ZP_04914049.1| transcription elongation factor GreB [Burkholderia mallei JHU] gi|254298847|ref|ZP_04966297.1| transcription elongation factor GreB [Burkholderia pseudomallei 406e] gi|254356401|ref|ZP_04972677.1| transcription elongation factor GreB [Burkholderia mallei 2002721280] gi|52210585|emb|CAH36568.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52429442|gb|AAU50035.1| transcription elongation factor GreB [Burkholderia mallei ATCC 23344] gi|121229442|gb|ABM51960.1| transcription elongation factor GreB [Burkholderia mallei SAVP1] gi|124293458|gb|ABN02727.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10229] gi|126220008|gb|ABN83514.1| transcription elongation factor GreB [Burkholderia pseudomallei 668] gi|126228618|gb|ABN92158.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106a] gi|126243490|gb|ABO06583.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10247] gi|147746612|gb|EDK53689.1| transcription elongation factor GreB [Burkholderia mallei FMH] gi|147751593|gb|EDK58660.1| transcription elongation factor GreB [Burkholderia mallei JHU] gi|148025398|gb|EDK83552.1| transcription elongation factor GreB [Burkholderia mallei 2002721280] gi|157809034|gb|EDO86204.1| transcription elongation factor GreB [Burkholderia pseudomallei 406e] gi|157939550|gb|EDO95220.1| transcription elongation factor GreB [Burkholderia pseudomallei Pasteur 52237] gi|160696465|gb|EDP86435.1| transcription elongation factor GreB [Burkholderia mallei ATCC 10399] gi|169652773|gb|EDS85466.1| transcription elongation factor GreB [Burkholderia pseudomallei S13] gi|238525403|gb|EEP88831.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse 4] gi|242140185|gb|EES26587.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106b] gi|243065364|gb|EES47550.1| transcription elongation factor GreB [Burkholderia mallei PRL-20] Length = 187 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G + ++L V + Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|300812144|ref|ZP_07092589.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496872|gb|EFK31949.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325684830|gb|EGD26979.1| transcription elongation factor GreA 1 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 153 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+ Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ AL+ + GD ++V AP G+ IL V Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSV 152 >gi|167895419|ref|ZP_02482821.1| transcription elongation factor GreB [Burkholderia pseudomallei 7894] gi|254181033|ref|ZP_04887631.1| transcription elongation factor GreB [Burkholderia pseudomallei 1655] gi|184211572|gb|EDU08615.1| transcription elongation factor GreB [Burkholderia pseudomallei 1655] Length = 186 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 30 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 90 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G + ++L V + Sbjct: 149 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 180 >gi|289806266|ref|ZP_06536895.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 79 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 56/74 (75%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + P Sbjct: 6 RVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTP 65 Query: 145 GGEKTYEILQVLWI 158 GG+ YE+L+V ++ Sbjct: 66 GGDVEYEVLKVEYL 79 >gi|313123017|ref|YP_004033276.1| transcription elongation factor grea [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279580|gb|ADQ60299.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 153 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+ Sbjct: 1 MVYYQKMTPEGYKQIEDEIAVLKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ AL+ + GD ++V AP G+ IL V Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSV 152 >gi|325524704|gb|EGD02693.1| transcription elongation factor GreB [Burkholderia sp. TJI49] Length = 187 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV + G+ IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDRGCVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI +GD +++ P G + ++L V + Sbjct: 150 VARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|308066908|ref|YP_003868513.1| transcription elongation factor greA (transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|310639545|ref|YP_003944303.1| transcription elongation factor [Paenibacillus polymyxa SC2] gi|305856187|gb|ADM67975.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|309244495|gb|ADO54062.1| Transcription elongation factor [Paenibacillus polymyxa SC2] Length = 158 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D Sbjct: 61 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK+ G ++ V P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDI 156 >gi|291548409|emb|CBL21517.1| Transcription elongation factor [Ruminococcus sp. SR1/5] Length = 166 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +KI+QE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTRKDVEKIEQEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ ++ S D + V ++ + + + Y++V + +SI SPI Sbjct: 65 ERMLKTASIVSDASRS-DEVGMDDIVEVLFEEDNEVEKYKLVTSIRGNSMENRISIESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +AL G +GD + V Y +++ Sbjct: 124 GKALRGHRVGDRVEVKVNDDYSYYLVIK 151 >gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956] Length = 160 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 10/154 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ I++++ +Q+ RP +I + ARA GDLSEN EY AK EL++L E R+ Sbjct: 9 MTPAGYRAIEEQIEALKQK-RPTLITRLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VS 121 L+ +T A+VID+S ++A G V++ + ++ YQIVG +A+ Q+ L ++ Sbjct: 67 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAE-QASLTEEVLA 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL G G ++V+AP I+ V Sbjct: 124 FDSPLGLALKGHTAGTTVTVHAPAASYQVTIITV 157 >gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC 14931] gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN] gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC 14931] gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN] Length = 160 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 10/154 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ I++++ +Q+ RP +I + ARA GDLSEN EY AK EL++L E R+ Sbjct: 9 MTPAGYRAIEEQIEALKQK-RPTLITRLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VS 121 L+ +T A+VID+S ++A G V++ + ++ YQIVG +A+ Q+ L ++ Sbjct: 67 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAE-QASLTEEVLA 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL G G ++V+AP I+ V Sbjct: 124 FDSPLGLALKGHTAGTTVTVHAPAASYQVTIITV 157 >gi|168830125|gb|ACA34353.1| transcription elongation factor [Paenibacillus polymyxa] Length = 165 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 8 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 67 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D Sbjct: 68 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 127 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++GK+ G ++ V P G Y+I+ + Sbjct: 128 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDI 163 >gi|309805958|ref|ZP_07699985.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|309808528|ref|ZP_07702427.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|312871258|ref|ZP_07731356.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|312872694|ref|ZP_07732759.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|325912492|ref|ZP_08174882.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|308167640|gb|EFO69792.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|308168356|gb|EFO70475.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|311091736|gb|EFQ50115.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|311093272|gb|EFQ51618.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|325478165|gb|EGC81287.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] Length = 153 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ + + + G+ V + ++ + + Y IVG EADV +S SP+ Sbjct: 66 NKQLQYAQIVQKN--NDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+ K+ GD++ VNAP G I+ V Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152 >gi|167586480|ref|ZP_02378868.1| transcription elongation factor GreB [Burkholderia ubonensis Bu] Length = 187 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLNLIDAERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV + G++ IVG E D+ G VS SP Sbjct: 91 TKRLDIAEVVDASRQENTDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDHGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ ++GD +++ P G + ++L V + Sbjct: 150 VARALLKAKIGDTVTLMTPAGPQPIDVLDVHY 181 >gi|285017768|ref|YP_003375479.1| transcription elongation factor greb (transcript cleavage factor greb) protein [Xanthomonas albilineans GPE PC73] gi|283472986|emb|CBA15491.1| probable transcription elongation factor greb (transcript cleavage factor greb) protein [Xanthomonas albilineans] Length = 168 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+ Sbjct: 15 ITPEGHARLKAELDDLWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + V+ + + FGA ++L + +SG+ + Y+IVG E D G +SI S Sbjct: 73 YLSKRLEALRVVADAPSDPQAVFFGARIALEDVDSGELRRYRIVGPDETDAARGWISIDS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+ K + D + PGG ++ ++ V Sbjct: 133 PLARALLKKRIDDEVEAQLPGGRHSFVVVAV 163 >gi|295677338|ref|YP_003605862.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295437181|gb|ADG16351.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 189 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 32 MTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 92 TKRLDLAEVVDSSRQENVDQVFFGATVDYATED-GEEHKVTIVGVDEVDLDIGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182 >gi|47459270|ref|YP_016132.1| transcription elongation factor [Mycoplasma mobile 163K] gi|47458599|gb|AAT27921.1| transcription elongation factor [Mycoplasma mobile 163K] Length = 174 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 6/155 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T + + + EL ERP+II+ I +ARA GDLSEN+EY +A+E Q E R+ Sbjct: 22 KLYLTLESVETYKTELNNLINVERPKIIEEIKDARAQGDLSENSEYDSAREKQGQIEDRI 81 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSGLVS 121 E+E I+ I ++ S ++ G+ V L K +KK ++ IVG E D +S Sbjct: 82 KEIEYILENYTEIQNASKSK-KVTIGSKVLL--KRIDNKKQFEVKIVGTLETDPFLNKIS 138 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SSPI++ ++G ++GD+ +NAP + EIL+ L Sbjct: 139 YSSPISQGIMGSKIGDVREINAPTKYEV-EILKFL 172 >gi|120612233|ref|YP_971911.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1] gi|120590697|gb|ABM34137.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1] Length = 188 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPAGYARLRSELLDLMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS SP Sbjct: 92 TKRLDIAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSGQSQVSWVSP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ GD + + PGG +T EIL+V Sbjct: 151 VARALLKAREGDEVRLGTPGGLRTLEILRV 180 >gi|104773455|ref|YP_618435.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422536|emb|CAI97129.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 153 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+ Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ AL+ + GD + V AP G+ IL V Sbjct: 117 LPFDSPLGHALMKHKAGDRVKVKAPMGDYEVTILSV 152 >gi|188590574|ref|YP_001920968.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|188500855|gb|ACD53991.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] Length = 155 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 8/155 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + + D+ + G A + VE + D+ +V + D ++ L+SI Sbjct: 65 MTMISTATVIDDTEI--DKSSLGINSKARIKFVEDD--DEDVITLVTTMDLDPENMLISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S + +AL+GK+ G+ + V APG + T +IL++L+ Sbjct: 121 ESDLGKALMGKKAGETVEVEAPGAKYTVKILEILY 155 >gi|251779859|ref|ZP_04822779.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084174|gb|EES50064.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 155 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +I+ A VID + + + A + VE + D+ +V + D ++ L+SI S Sbjct: 65 MTMISTATVIDDTEIDKSTLGINSKARIKFVEDD--DEDVITLVTTMDLDPENMLISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +AL+GK+ G+ + V APG + T +IL++L+ Sbjct: 123 DLGKALMGKKAGETVEVEAPGAKYTVQILEILY 155 >gi|209519140|ref|ZP_03267945.1| transcription elongation factor GreB [Burkholderia sp. H160] gi|209500440|gb|EEA00491.1| transcription elongation factor GreB [Burkholderia sp. H160] Length = 189 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 32 MTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP Sbjct: 92 TKRLDLAEVVDSSRQENVDQVFFGATVDYATED-GEEHKVTIVGIDEVDLDIGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182 >gi|253579767|ref|ZP_04857035.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848766|gb|EES76728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 166 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T K +KIQQE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 2 KEKLTQKDVEKIQQEIDHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LEN++ A ++ + D + V + + + + Y++V + +SI Sbjct: 62 RYLENMLKTATIVSDDS-KDDEVGMDDIVEVYFEEDDEIEKYKLVTSIRGNSMENRISIE 120 Query: 124 SPIARALIGKELGDIISV 141 SPI AL G ++GD + V Sbjct: 121 SPIGMALKGHKVGDRVEV 138 >gi|167563692|ref|ZP_02356608.1| transcription elongation factor GreB [Burkholderia oklahomensis EO147] gi|167570842|ref|ZP_02363716.1| transcription elongation factor GreB [Burkholderia oklahomensis C6786] Length = 187 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G + ++L V + Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|303256877|ref|ZP_07342891.1| transcription elongation factor GreB [Burkholderiales bacterium 1_1_47] gi|330998874|ref|ZP_08322601.1| transcription elongation factor GreB [Parasutterella excrementihominis YIT 11859] gi|302860368|gb|EFL83445.1| transcription elongation factor GreB [Burkholderiales bacterium 1_1_47] gi|329576088|gb|EGG57607.1| transcription elongation factor GreB [Parasutterella excrementihominis YIT 11859] Length = 191 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++++ E + ERP ++ ++ A + GD SENA+YQ K+ + R+ L Sbjct: 30 MTRACYNRLLDERKNLVLVERPNVVNVVAWAASNGDRSENADYQYGKQRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +EVIDI D+I FGAT+ + GD+ +IVG EAD G VS SP Sbjct: 90 NKRIEASEVIDIDKRPPTDQIFFGATI-VYANEQGDESKIRIVGIDEADASVGDVSWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR + GD + + P G K EIL+V ++ Sbjct: 149 IARVFLKHFEGDTVLLPTPKGVKKLEILEVTYV 181 >gi|325274307|ref|ZP_08140416.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51] gi|324100565|gb|EGB98302.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51] Length = 157 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITSEGHAALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+ Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDDGETMKFRIVGYDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K+ GD + V+ P GE T+ + Sbjct: 125 ARALLKKQEGDEVLVHTPTGEATWYV 150 >gi|227329053|ref|ZP_03833077.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 +T +++D S + FGA V +E GD K +IVG D+ +SI SP Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDNKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARA++ K + + +VN P G + + + Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151 >gi|320538381|ref|ZP_08038256.1| prokaryotic transcription elongation factor, GreA/GreB protein [Treponema phagedenis F0421] gi|320144766|gb|EFW36507.1| prokaryotic transcription elongation factor, GreA/GreB protein [Treponema phagedenis F0421] Length = 893 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 81/149 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K + ++EL+ + P K I +A GDL ENAEY+AA+E Q + L Sbjct: 740 VTAKMLEAKKKELQEIIDIKIPENSKEIGKALELGDLRENAEYKAAREEQTRLNNMVTRL 799 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA+V D + + +++FG V L SG+ + Y I+G E++ + G++S SP+ Sbjct: 800 QEEIERAQVFDPTATTIGKVSFGTIVELKNHTSGENEVYTILGPWESNPEGGVISYMSPL 859 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L+ + G+ +S EK YEIL + Sbjct: 860 GTNLLNHKKGEKLSFTISEDEKIYEILNI 888 >gi|187925055|ref|YP_001896697.1| transcription elongation factor GreB [Burkholderia phytofirmans PsJN] gi|187716249|gb|ACD17473.1| transcription elongation factor GreB [Burkholderia phytofirmans PsJN] Length = 189 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL +RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 32 ITPAGYRRMRDELLHLIDVDRPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S D++ FGATV ++ G+ IVG E D+ G VS SP Sbjct: 92 TKRLDLAEVVDSSKQENVDQVFFGATVEYATQD-GETHIVTIVGIDEVDLDIGHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182 >gi|119952935|ref|YP_945144.1| transcript cleavage factor/unknown domain fusion protein [Borrelia turicatae 91E135] gi|119861706|gb|AAX17474.1| transcription elongation factor GreA [Borrelia turicatae 91E135] Length = 900 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 69/126 (54%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMSEID 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 811 FAKVIDTKELQSSVVGFGTKVTMINKDTKREESYLIFGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DAKEGD 876 >gi|28211542|ref|NP_782486.1| transcription elongation factor greA [Clostridium tetani E88] gi|28203983|gb|AAO36423.1| transcription elongation factor greA [Clostridium tetani E88] Length = 154 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +K+++EL +R +R I K EA A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMNKLKEELEYRMTTKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID + D+ G + VE + + N +V +A+ + +S+ Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDDF--ETNVSLVTTMDAEPEKMHISV 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD++ V APG + T E+L+++ Sbjct: 121 ESDLGKALMGKKVGDVVEVYAPGEKYTVEVLEMI 154 >gi|331007819|ref|ZP_08330923.1| Transcription elongation factor GreB [gamma proteobacterium IMCC1989] gi|330418373|gb|EGG92935.1| Transcription elongation factor GreB [gamma proteobacterium IMCC1989] Length = 168 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + EL+ + ERP + + EA GD SEN +Y K+ + R+ L Sbjct: 15 ITAEGAAHLTAELKQLWKVERPVVTDTVHEAAKNGDRSENGDYIYGKKRLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D + + + + FGA V+L++ + ++ YQIVG E D+ +S+ SPI Sbjct: 75 TKRLEELTIVDQAPANQNTVYFGAWVTLIDDDDNTQR-YQIVGPDEFDISQQKISMDSPI 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 A+AL+ K+LGD + + P G+ + I ++ +I Sbjct: 134 AKALLKKQLGDEVLIVTPNGDTLFYIEKIEYI 165 >gi|253690269|ref|YP_003019459.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756847|gb|ACT14923.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 163 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 +T +++D S + FGA V +E GD K +IVG D+ +SI SP Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDNKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARA++ K + + +VN P G + + + Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151 >gi|83720256|ref|YP_442130.1| transcription elongation factor GreB [Burkholderia thailandensis E264] gi|167619078|ref|ZP_02387709.1| transcription elongation factor GreB [Burkholderia thailandensis Bt4] gi|83654081|gb|ABC38144.1| transcription elongation factor GreB [Burkholderia thailandensis E264] Length = 187 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ +GD +++ P G + ++L V + Sbjct: 150 IARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|332185240|ref|ZP_08386989.1| transcription elongation factor GreB [Sphingomonas sp. S17] gi|332014964|gb|EGI57020.1| transcription elongation factor GreB [Sphingomonas sp. S17] Length = 160 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 86/153 (56%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T G+ ++QE ERP+++ I+ A GD SEN +Y K L+ ++ R+ Sbjct: 7 ITPAGYAALRQEYEALFAVERPKLVDTIAWAAGNGDRSENGDYIYGRKRLREIDR-RLGW 65 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+VID + ++ FGATV++ +++ +++ +VGD EAD G V ++ Sbjct: 66 LSKRMKAAKVIDPARQEDRSKVWFGATVTIADEDD-NERVLTLVGDDEADAGQGRVGWNA 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ RAL G +GD+ V P GE+ YE++ + + Sbjct: 125 PLVRALRGAAIGDLRRVVLPAGEREYEVIAITY 157 >gi|312959745|ref|ZP_07774261.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6] gi|311285911|gb|EFQ64476.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6] Length = 157 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ ++ FGA V +E G+ K ++IVG E + +SI SP+ Sbjct: 66 RKRLEDMRVVEYMPEQEGKVFFGAWVD-IENEKGETKRFRIVGYDEIYDRMDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+ D V P GE + I Sbjct: 125 ARALLRKEVDDEAIVQTPNGEVCWWI 150 >gi|85708976|ref|ZP_01040042.1| transcription elongation factor [Erythrobacter sp. NAP1] gi|85690510|gb|EAQ30513.1| transcription elongation factor [Erythrobacter sp. NAP1] Length = 147 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG-D 84 ERP I++ +S A GD SEN +Y ++ + + L + V+D + Sbjct: 15 ERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELGYLSRRMKACRVVDPANQPDRS 74 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R+ FGATV L +++ +++ IVGD E D GLV SSPIA+AL G +GD+ V P Sbjct: 75 RVFFGATVELADEDD-ERRTVTIVGDDEQDAGKGLVGWSSPIAKALKGASVGDLRIVKLP 133 Query: 145 GGEKTYEILQV 155 GG K +E++ + Sbjct: 134 GGLKEWEVMGI 144 >gi|219856286|ref|YP_002473408.1| hypothetical protein CKR_2943 [Clostridium kluyveri NBRC 12016] gi|219570010|dbj|BAH07994.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 157 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E R+ Sbjct: 7 VILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTETRIQ 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + A +I+ S++ D T + + + + +V E+DV++ +SI S Sbjct: 67 ELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRISIES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ +AL ++GD +V +P G E+ ++L Sbjct: 126 PLGKALFRLKVGDKATVISPDGNYDVEVEKLL 157 >gi|224532243|ref|ZP_03672875.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia valaisiana VS116] gi|224511708|gb|EEF82114.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia valaisiana VS116] Length = 900 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 69/126 (54%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DSKEGD 876 >gi|227328601|ref|ZP_03832625.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 79 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 56/74 (75%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + P Sbjct: 6 RVIFGSTVTVMNLDNEEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIRTP 65 Query: 145 GGEKTYEILQVLWI 158 GG+ YEIL+V ++ Sbjct: 66 GGDVEYEILKVEYL 79 >gi|225024039|ref|ZP_03713231.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC 23834] gi|224943064|gb|EEG24273.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC 23834] Length = 163 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+D T + D+I FGATV L+ N G+++ +IVG E D +S +SP Sbjct: 69 TKRLEAAQVVDPETREATDQIFFGATVELLRGN-GEEQTVRIVGVDEIDTARHKISWTSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARAL+ GD I + P G + E+L V ++ Sbjct: 128 LARALLKAREGDEIVFHGPEGREEIEVLSVAYV 160 >gi|153955944|ref|YP_001396709.1| GreA2 [Clostridium kluyveri DSM 555] gi|146348802|gb|EDK35338.1| GreA2 [Clostridium kluyveri DSM 555] Length = 154 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E R+ Sbjct: 4 VILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTETRIQ 63 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + A +I+ S++ D T + + + + +V E+DV++ +SI S Sbjct: 64 ELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ +AL ++GD +V +P G E+ ++L Sbjct: 123 PLGKALFRLKVGDKATVISPDGNYDVEVEKLL 154 >gi|229826123|ref|ZP_04452192.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC 49176] gi|229789696|gb|EEP25810.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC 49176] Length = 167 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++++E+ R+ R I+A+ EARA GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKNDIRRLEEEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKRHKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A++I+ + S D + TV++ + +++ +++V D + L++I SP+ Sbjct: 65 EKMIKTAKIIEDDS-SEDEVGPDNTVTVYFIDDDEEETFKLVTAVRGDSLNNLITIDSPL 123 Query: 127 ARALIGKELGD--IISVNAPGG 146 +AL+ K++GD + VN G Sbjct: 124 GKALLKKKVGDKVYVKVNERSG 145 >gi|329119869|ref|ZP_08248543.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC BAA-1200] gi|327464025|gb|EGF10336.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC BAA-1200] Length = 190 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 36 ITPAGWQALKDELYSLVNKERPEIVQVVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 95 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+VID T + D++ FGATV+L+ N G ++ IVG E D +S SP Sbjct: 96 TKRLEAAQVIDPETREATDQVFFGATVTLLRGN-GSEQVVSIVGIDETDAARNKISWISP 154 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + + P G + EIL+V +I Sbjct: 155 LARCLIKAREGDAVVLRTPEGREDIEILEVAYI 187 >gi|189219263|ref|YP_001939904.1| transcription elongation factor GreA fused to uncharacterized associated domain [Methylacidiphilum infernorum V4] gi|189186121|gb|ACD83306.1| Transcription elongation factor GreA fused to uncharacterized associated domain [Methylacidiphilum infernorum V4] Length = 614 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 69/122 (56%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P K I+ AR+YGDL EN EY+AAKE+Q + R AELE++I+RA D S + + Sbjct: 476 PENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESMISRARATDFSNVDTTTVN 535 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G VS + + + I+G +++ G++S + ++L+G + GD++ V+ G Sbjct: 536 IGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQSLLGHKTGDVLQVSLEDGI 595 Query: 148 KT 149 T Sbjct: 596 TT 597 >gi|332972986|gb|EGK10926.1| transcription elongation factor GreB [Kingella kingae ATCC 23330] Length = 168 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++Q EL +ERP I + ++ A + GD SEN +Y K + R+ L Sbjct: 14 ITPTGHRRLQDELYQLVHKERPEIAQIVNWAASNGDRSENGDYLYGKRRMCEIDRRIRFL 73 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V++ T D+I F ATV+L E+ +G ++ +IVG+ E D G +S SP Sbjct: 74 TKRLEHALVVNPETREPTDQIFFAATVTL-ERGNGAEQVVKIVGEDEIDSAQGKISWKSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 133 LARVLIKAREGDTVWLNTPDGREQIEILIVEYI 165 >gi|256848431|ref|ZP_05553873.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] gi|256714698|gb|EEU29677.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] Length = 155 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 7/147 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T +G+ +I+ ++ ++ERP I + ARA GDLSEN EY AK +L++L E R+ Sbjct: 9 MTPEGYHEIELQIE-ELKKERPTKIARLKAARALGDLSENTEYSTAKRDLRHL-ESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +T A+VI G I G+TV++ + + YQIVG EAD+ + ++ SP Sbjct: 67 LNKQLTYAKVI--QHRDGGPIDLGSTVTIEFLDDHSQITYQIVGTHEADLANHKLAFDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + +A++GK +++V AP + TY++ Sbjct: 125 LGQAMMGKMANLVVNVVAP--DSTYQV 149 >gi|332528000|ref|ZP_08404034.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus JA2] gi|332112574|gb|EGJ12367.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus JA2] Length = 193 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++EL ERP+I++ +S A GD SEN +Y K+ + R+ L Sbjct: 33 MTPQGWRMLREELMTLLDVERPKIVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D++ FGATV+ G+++ I G EAD G VS +P Sbjct: 93 TKRLDIAEVADPSAHHGSDQVFFGATVTYANAK-GEERTITIKGIDEADNLKGEVSWVAP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ GD + + PGG +T E+++V + Sbjct: 152 IARALLKSREGDEVQLMTPGGLETIEVVEVRY 183 >gi|296160041|ref|ZP_06842861.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295889787|gb|EFG69585.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 189 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 32 ITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D S D++ FGATV ++ G+ IVG E D+ VS SP Sbjct: 92 TKRLDLAEIVDSSKQENVDQVFFGATVEYATED-GEVHTVTIVGIDEVDLDIAHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182 >gi|23015545|ref|ZP_00055318.1| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 33 QGFAALKAELSHLHKVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFLTKR 92 Query: 70 ITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSPIA 127 + A V+D D++ FGATV+ N+ D++ IVG EAD++ GL+S SP+A Sbjct: 93 MESAHVVDPDQQKNRDQVFFGATVTYA--NARDEEITVTIVGIDEADLERGLISWISPVA 150 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+ GD + V P G + E++ + + Sbjct: 151 RALLKASEGDTVPVRTPSGTEMIEVVAIRY 180 >gi|294790721|ref|ZP_06755879.1| transcription elongation factor GreA [Scardovia inopinata F0304] gi|294458618|gb|EFG26971.1| transcription elongation factor GreA [Scardovia inopinata F0304] Length = 160 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL +R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ EL Sbjct: 9 LTQEAYDKLREELTYREGELREEIKEKIAAARAEGDLSENGGYQAAREEQGKNEGRIQEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + ++++ ++ G+ V L + +G + Y ++G + V + +VS S Sbjct: 69 TVKLRDSQILKAPNPG--KVGPGSLVVL--EIAGREMTY-VLGSHDLAVATDYDIVSPES 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+ GK+ GD +S AP G Sbjct: 124 PIGAAINGKKTGDTVSYTAPNG 145 >gi|203287597|ref|YP_002222612.1| transcription elongation factor EF [Borrelia recurrentis A1] gi|201084817|gb|ACH94391.1| transcription elongation factor EF [Borrelia recurrentis A1] Length = 900 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 69/124 (55%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I A Sbjct: 753 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEIDVA 812 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 813 KVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLLDS 872 Query: 134 ELGD 137 GD Sbjct: 873 REGD 876 >gi|224532797|ref|ZP_03673413.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23] gi|224512285|gb|EEF82670.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23] Length = 901 Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 69/126 (54%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 + GD Sbjct: 872 DSKEGD 877 >gi|124267908|ref|YP_001021912.1| transcription elongation factor [Methylibium petroleiphilum PM1] gi|124260683|gb|ABM95677.1| transcription elongation factor [Methylibium petroleiphilum PM1] Length = 213 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF +++ EL +ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 58 ITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 117 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV D S G D++ FGATV+ + G ++ I G EAD VS SP Sbjct: 118 TKRLEIAEVADPSVHRGSDQVFFGATVTYAAPD-GVERTITIKGIDEADNLQAEVSWISP 176 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD +++ P G +T E+++V + Sbjct: 177 VARALLKARVGDEVTLLTPQGPQTIEVIEVRY 208 >gi|203284058|ref|YP_002221798.1| transcription elongation factor EF [Borrelia duttonii Ly] gi|201083501|gb|ACH93092.1| transcription elongation factor EF [Borrelia duttonii Ly] Length = 900 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 69/124 (55%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I A Sbjct: 753 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEIDVA 812 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 813 KVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLLDS 872 Query: 134 ELGD 137 GD Sbjct: 873 REGD 876 >gi|269837141|ref|YP_003319369.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM 20745] gi|269786404|gb|ACZ38547.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM 20745] Length = 156 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 2/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T++G +++EL + + P + I E GD+S+N+EY+ KE E R+ Sbjct: 7 VTLTAEGKADLERELHHLRTVKLPDVTARIQELSMDGDVSDNSEYEDTKEELIQLEARIR 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E+EN++ R VI G + G+ V++V++ +G + + +V +EA+ G +S S Sbjct: 67 EIENLLRRVRVIAPGKSDG-VVKLGSRVTIVDE-TGQAETWILVSPEEANTLQGKISTES 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ K +GD + V APGGE ++ I +V Sbjct: 125 PVGAALLDKRVGDSVVVRAPGGETSFTIEKV 155 >gi|239618392|ref|YP_002941714.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1] gi|239507223|gb|ACR80710.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1] Length = 158 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T +G++ ++ EL +++ + + I EAR GDLSEN+EY AK Q + R+ Sbjct: 7 IYLTKEGYENLKNELNTLRKKLMYEVAERIKEARELGDLSENSEYDEAKNEQGKIDSRIK 66 Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE I+ AE+I+ GD + GA V L + ++ +IV QEAD+ +S Sbjct: 67 ELEYILDNAEIIE---DDGDNSVVKLGAKVRLRNLKTNEEIEIRIVNSQEADIFENKISA 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI +A++ + + D + V P G Y+I+ + Sbjct: 124 DSPIGKAVLERSVDDEVVVRTPSGIIKYKIITI 156 >gi|160901647|ref|YP_001567228.1| transcription elongation factor GreA [Petrotoga mobilis SJ95] gi|189042243|sp|A9BFC0|GREA_PETMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|160359291|gb|ABX30905.1| transcription elongation factor GreA [Petrotoga mobilis SJ95] Length = 159 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 89/151 (58%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E ++ + + I EAR GDLSEN+EY+ AK Q + + R+ E+ Sbjct: 8 LTREGYEKLKREREELKKRLMGEVAERIKEARELGDLSENSEYEEAKNEQGMIDSRIKEI 67 Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + I+ AE+I+ ++ G V + + ++ + +V QEA+++ +SI SP Sbjct: 68 DYILDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEENKISIESP 127 Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQV 155 I R+L+G++ G++I++ A G K EI ++ Sbjct: 128 IGRSLLGRKKGEVINIKTARGSSKKIEIKEI 158 >gi|223940861|ref|ZP_03632689.1| GreA/GreB family elongation factor [bacterium Ellin514] gi|223890471|gb|EEF57004.1| GreA/GreB family elongation factor [bacterium Ellin514] Length = 606 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 76/129 (58%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 Q++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE+ + RA D Sbjct: 469 QKKIPANSKEIAIARSYGDLRENHEYKAAKEMQKILMRRKAELESELVRARGTDYLNPKT 528 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D ++ G V + + NS +++ I+G ++D + ++S +P+A++L+ ++ G+ + Sbjct: 529 DAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLAPLAQSLLNRKPGEEVDYEM 588 Query: 144 PGGEKTYEI 152 G ++ + I Sbjct: 589 DGQKRRFRI 597 >gi|315037460|ref|YP_004031028.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|312275593|gb|ADQ58233.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] Length = 143 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 13/149 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +I+ E+ R ++ RPR IK + A A GDLSEN EY AK L Sbjct: 7 MTPEGYKQIEDEI-ARLKKGRPRRIKILQAACALGDLSENTEYTEAKRY----------L 55 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E+++ T ++ G TV L + D + Y+IVG EAD+ G +S SP+ Sbjct: 56 GKQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +A++ KE G +V AP GE I++V Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEV 142 >gi|195942372|ref|ZP_03087754.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] Length = 901 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|87122832|ref|ZP_01078703.1| transcription elongation factor GreB [Marinomonas sp. MED121] gi|86161884|gb|EAQ63178.1| transcription elongation factor GreB [Marinomonas sp. MED121] Length = 168 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +G K+ EL++ +E+RP++ +++ EA A GD SENAEY K+L+ ++ R+ Sbjct: 15 ITKEGAQKLTTELKYLWKEKRPQVTESVREAAAQGDRSENAEYIYGKKQLREIDR-RVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D I FGA V+L E + + K ++IVG E D S +SI SP Sbjct: 74 LEKRLEAFTVVDRLPEDQLSIYFGAWVTL-EDDDENTKYFRIVGPDELDHDSRYISIDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A+AL+ K+ GD I + G Y I +V Sbjct: 133 MAKALLKKQEGDEIELKLVTGIVNYIIDKV 162 >gi|148553320|ref|YP_001260902.1| transcription elongation factor GreB [Sphingomonas wittichii RW1] gi|148498510|gb|ABQ66764.1| transcription elongation factor GreB [Sphingomonas wittichii RW1] Length = 163 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T GF ++ ERP +++ IS A GD SEN +Y K+L+ ++ +A Sbjct: 10 ITPAGFAAMRARYDHLFGTERPALVEVISWAAGNGDRSENGDYIYGRKKLREIDR-ELAY 68 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+V+D + + ++ FGATV++V+++ ++ +VG EAD SG +S S Sbjct: 69 LSRRMKAAKVVDPARQAERGKVFFGATVTVVDEDDVER-TVTLVGADEADAGSGRISWLS 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL G +GD+ V PGG++ EIL + + Sbjct: 128 PLARALRGAAVGDVRRVALPGGDREQEILSIRY 160 >gi|312149070|gb|ADQ29141.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi N40] Length = 901 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|226320676|ref|ZP_03796234.1| transcription elongation factor GreA [Borrelia burgdorferi 29805] gi|226233892|gb|EEH32615.1| transcription elongation factor GreA [Borrelia burgdorferi 29805] Length = 901 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|195941869|ref|ZP_03087251.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] gi|195942362|ref|ZP_03087744.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] gi|195942405|ref|ZP_03087787.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] Length = 901 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|225549223|ref|ZP_03770196.1| transcription elongation factor GreA [Borrelia burgdorferi 94a] gi|225370081|gb|EEG99521.1| transcription elongation factor GreA [Borrelia burgdorferi 94a] Length = 901 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|15594477|ref|NP_212266.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi B31] gi|218249878|ref|YP_002374660.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi ZS7] gi|223889075|ref|ZP_03623664.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 64b] gi|7531126|sp|O51157|GREA_BORBU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2688004|gb|AAC66506.1| transcription elongation factor (greA) [Borrelia burgdorferi B31] gi|218165066|gb|ACK75127.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi ZS7] gi|223885324|gb|EEF56425.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 64b] Length = 901 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|311747108|ref|ZP_07720893.1| transcription elongation factor GreB [Algoriphagus sp. PR1] gi|126578813|gb|EAZ82977.1| transcription elongation factor GreB [Algoriphagus sp. PR1] Length = 171 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 82/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G K+++E + ERP + ++ A + GD SENA+Y K+ + R+ L Sbjct: 19 ITSEGLQKLKEEHDHLWRVERPDVTAKVAWAASLGDRSENADYHYNKKRLREIDNRLRYL 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +VI+ ++ FGA V + + G K ++IVG +E +S+ SP+ Sbjct: 79 RKCIDDFKVIEYHPNQEGKVNFGAWVEIKNEKKGLKNRFRIVGYEELIGNKNYISMDSPM 138 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A++L+GK +GD + V+ G+ ++IL++ Sbjct: 139 AKSLLGKAVGDEVIVSTKLGDFVWKILKI 167 >gi|225549861|ref|ZP_03770823.1| transcription elongation factor GreA [Borrelia burgdorferi 118a] gi|225369552|gb|EEG99003.1| transcription elongation factor GreA [Borrelia burgdorferi 118a] gi|312148364|gb|ADQ31023.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi JD1] Length = 901 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|254513872|ref|ZP_05125933.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3] gi|219676115|gb|EED32480.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3] Length = 167 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 5/153 (3%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T+ G +++ EL WR+ ERP + A+ +A GD SEN +Y K+ + R+ Sbjct: 15 ITAAGEARLRAELDNLWRK--ERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + + +V+ + RI FGATV VE + I+G E + G VSI S Sbjct: 73 FISKRLESLQVVRETPSDTSRIFFGATVE-VEDQHAVIQTITILGPDEFESSRGEVSIDS 131 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIAR L+GK +GD + + +PGGE+ E+L + + Sbjct: 132 PIARVLLGKSVGDSVRLESPGGERELEVLDIRY 164 >gi|30249800|ref|NP_841870.1| transcription elongation factor GreB [Nitrosomonas europaea ATCC 19718] gi|30180837|emb|CAD85759.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 182 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ L Sbjct: 29 ITPGGYQRLKDEFDQLWRVERPELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRLRFL 88 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE+ID D++ FGATV++ + G+++ Y IVG EA+ G +S SP Sbjct: 89 SRRLDNAEIIDPKQRGECDQVFFGATVTVCNQR-GEEQTYSIVGIDEAEPGRGWISWISP 147 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A+AL+ GD++ + PGG + E++++ Sbjct: 148 LAKALLKAREGDVVPLQTPGGPQELEVVEI 177 >gi|229589215|ref|YP_002871334.1| transcription elongation factor [Pseudomonas fluorescens SBW25] gi|229361081|emb|CAY47944.1| transcription elongation factor [Pseudomonas fluorescens SBW25] Length = 157 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ ++ FGA V +E G+ K ++IVG E + +SI SP+ Sbjct: 66 RKRLEDMRVVEYMPEQEGKVFFGAWVD-IENEQGETKRFRIVGYDEIYERMDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+ D V P G+ + I Sbjct: 125 ARALLRKEVDDEAIVQTPSGDVCWWI 150 >gi|237746721|ref|ZP_04577201.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] gi|229378072|gb|EEO28163.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] Length = 184 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL ERP++++ +S A + GD SEN +Y K + R+ L Sbjct: 30 ITPAGLKKLKDELLELIDTERPQVVQTVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I AE D S G D+I FGATV+ E+ +G++ IVG E D G +S SP Sbjct: 90 IKRIEAAEEFDPSVHYGNDQIFFGATVTY-ERQNGEENTVTIVGIDEFDPLQGKISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR LI GD ++++ P G + IL+V + Sbjct: 149 MARTLIKAHEGDTVTLHTPAGIEELVILEVSY 180 >gi|225551922|ref|ZP_03772862.1| transcription elongation factor GreA [Borrelia sp. SV1] gi|225370920|gb|EEH00350.1| transcription elongation factor GreA [Borrelia sp. SV1] Length = 901 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPGNSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|50123038|ref|YP_052205.1| transcription elongation factor GreB [Pectobacterium atrosepticum SCRI1043] gi|49613564|emb|CAG77015.1| transcription elongation factor [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYDKLRAEHEHLWNIKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125 + +++D S + FGA + +E GD K +IVG E S +SI SP Sbjct: 66 RKCLAELKIVDYSPQQDGSVFFGAWIE-IENEQGDVKRLRIVGPDEIYGDSKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARA++ K + + +VN P G + + I Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFI 151 >gi|118594719|ref|ZP_01552066.1| transcription elongation factor GreB [Methylophilales bacterium HTCC2181] gi|118440497|gb|EAV47124.1| transcription elongation factor GreB [Methylophilales bacterium HTCC2181] Length = 144 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +Q+EL + +RP +K IS A GD SEN +Y K+ + R+ L I A+ Sbjct: 1 MQRELSSLIKLDRPETVKVISWAAGNGDRSENGDYIYGKKKLRQIDSRIKFLLTAIEDAD 60 Query: 75 VIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 ++ ST + ++ FGA V L+++ S + +IVG E + G +S SP+A+ALIG+ Sbjct: 61 IVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWLSPLAKALIGR 120 Query: 134 ELGDIISVNAPGGEKTYEILQV 155 D+I V P KTY IL+V Sbjct: 121 TSSDLIEVQTPMNIKTYIILKV 142 >gi|308235569|ref|ZP_07666306.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14018] gi|311114342|ref|YP_003985563.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14019] gi|310945836|gb|ADP38540.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14019] Length = 159 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 7/144 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ Sbjct: 7 ILLTKEAYDKLKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122 EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S Sbjct: 67 ELIVKLRNAKILEAPEAGS--VGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SPI A++G + GD +S +AP G Sbjct: 122 ESPIGAAIMGAKAGDTVSYSAPNG 145 >gi|213584093|ref|ZP_03365919.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 71 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 54/71 (76%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + PGG+ Sbjct: 1 FGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGD 60 Query: 148 KTYEILQVLWI 158 YE+L+V ++ Sbjct: 61 VEYEVLKVEYL 71 >gi|297626874|ref|YP_003688637.1| Transcription elongation factor GreA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922639|emb|CBL57216.1| Transcription elongation factor GreA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 167 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 9/163 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M DK I +T + K+Q+EL + + E R I K I A+A GDLSEN Y AA+E Q Sbjct: 1 MSDKQTIWMTQDAYTKLQEELDYLKGEGRSLIAKKIGAAKAEGDLSENGGYHAAREEQGQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----A 113 E R+ +LE ++ AEV + + D + G+TV++ D + ++G +E Sbjct: 61 QELRIRQLEQMLQHAEVGEPQG-APDEVTAGSTVTVAYDGDPDDTDVFLLGSREMMGVDK 119 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 V + + S SP+ A++G+ GD + AP G E + +I++V Sbjct: 120 SVDTQVFSPQSPLGAAVLGRSAGDTVEYQAPNGREVSVKIMKV 162 >gi|153813303|ref|ZP_01965971.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174] gi|149830593|gb|EDM85684.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R I+A+ EARA GDLSEN EY AAK+ +N NE R+ LE ++ A V+D S+ S D + Sbjct: 67 RKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYLERMLKTATVVDDSSKS-DEV 125 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 V + + G+ + Y++V + VSI SPI +AL G +GD + VN Sbjct: 126 GMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESPIGKALKGHRVGDRVLVNV 182 >gi|91784882|ref|YP_560088.1| transcription elongation factor GreB [Burkholderia xenovorans LB400] gi|91688836|gb|ABE32036.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 189 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ L Sbjct: 32 ITPAGYRRMRDELLHLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D S D++ FGATV ++ G+ IVG E D+ VS SP Sbjct: 92 TKRLDLAEIVDSSKQENVDQVFFGATVEYATED-GEVHTVTIVGIDEVDLDIAHVSWISP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARAL+ ++GD +++ P G + +IL V + Sbjct: 151 IARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182 >gi|71894394|ref|YP_278502.1| transcription elongation factor GreA [Mycoplasma synoviae 53] gi|71851182|gb|AAZ43791.1| transcription elongation factor GreA [Mycoplasma synoviae 53] Length = 157 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + DK ++E + +R I A+ EARA GDLSENAEY A++ Q + E R Sbjct: 4 EKIFLSQETLDKYKKEYEKLVKVDRVEIQNALKEARAQGDLSENAEYDVARDKQAVVEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ +A++ I + I+ G+ V+ ++ ++ + I+G +AD + +S Sbjct: 64 ILELEGILDKAQL--IKHKDENTISIGSKVTFLDLSTNKEDEVTIMGIHDADPFNKKISN 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+A A++ K+ GD + V G + YEI Sbjct: 122 YSPLATAMMSKKEGDTVEVE---GLEKYEI 148 >gi|254786831|ref|YP_003074260.1| transcription elongation factor GreB [Teredinibacter turnerae T7901] gi|237686835|gb|ACR14099.1| transcription elongation factor GreB [Teredinibacter turnerae T7901] Length = 172 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 22 ITEEGLTKLKSELDYLWRTERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 81 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V+ + + FG+ V +E +G+ K +IVG E + +SI SP+ Sbjct: 82 RKRIDSLKVVRYAKEQEGSVYFGSWVK-IENEAGENKELRIVGYDEIFGEKNYISIDSPM 140 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+AL+ K++GD V GE +EI+++ Sbjct: 141 AKALLRKKVGDEAIVKTEVGEFCWEIMEI 169 >gi|326318293|ref|YP_004235965.1| transcription elongation factor GreB [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375129|gb|ADX47398.1| transcription elongation factor GreB [Acidovorax avenae subsp. avenae ATCC 19860] Length = 189 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 33 MTPAGYARLRSELLELMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS SP Sbjct: 93 TKRLDMAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSSQSQVSWVSP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ GD + + PGG +T EIL+V + Sbjct: 152 VARALLKAREGDEVRLGTPGGLRTLEILRVEY 183 >gi|238021831|ref|ZP_04602257.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147] gi|237866445|gb|EEP67487.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147] Length = 162 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +Q EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 8 MTPAGHAALQNELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 67 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V++ T D++ F ATV+L E+ +G ++ +IVG+ E D +S SP Sbjct: 68 TKRLQDAVVVNPETREPTDQVFFAATVTL-ERGNGAEQTVRIVGEDEIDAAHNKISWKSP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALI GD + +N P G + EIL V +I Sbjct: 127 LARALIKAREGDSVWLNTPEGREQIEILAVEYI 159 >gi|227112177|ref|ZP_03825833.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 159 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125 +T +++D S + FGA V +E G+ K +IVG D+ +SI SP Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGEVKRLRIVGPDEIYGDNKDYISIDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTY 150 +ARA++ K + + +VN P G + + Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREW 149 >gi|329901876|ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] gi|327548968|gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF ++++EL +RP ++ + A + GD SEN +Y K + R+ L Sbjct: 31 MTPAGFQRMREELLHLIDVDRPEVVHIVHWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D + G+ ++ FGATV E ++G++ IVG E D G +S SP Sbjct: 91 TKRLDVAEVVDPTIHHGNEQVFFGATVRY-ENSAGEQHVITIVGIDELDPLHGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARA+ +GD I++ P G + +IL+V + Sbjct: 150 VARAITKSRVGDTITLKTPSGVEELQILEVTY 181 >gi|145309060|gb|ABP57740.1| transcription elongation factor GreB [Chromobacterium violaceum] Length = 190 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP +++ ++ A + GD SEN +Y K + R+ L Sbjct: 36 ITPGGWQRLKDELYHLVNRERPEMVQVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 95 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D T D++ F ATV L+E+ G ++ +IVG E D+ G +S SP Sbjct: 96 TKRLEIAEVVDPETREATDQVFFSATV-LIERGDGSEQLLRIVGVDEIDLARGHISWISP 154 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IAR L+ GD + P G++ E+L+V Sbjct: 155 IARTLLKAREGDSVLFRGPDGDEDIEVLEV 184 >gi|224282816|ref|ZP_03646138.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] gi|310287270|ref|YP_003938528.1| transcription elongation factor greA [Bifidobacterium bifidum S17] gi|311064119|ref|YP_003970844.1| transcription elongation factor [Bifidobacterium bifidum PRL2010] gi|313139975|ref|ZP_07802168.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] gi|309251206|gb|ADO52954.1| Transcription elongation factor greA [Bifidobacterium bifidum S17] gi|310866438|gb|ADP35807.1| GreA Transcription elongation factor [Bifidobacterium bifidum PRL2010] gi|313132485|gb|EFR50102.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] Length = 159 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD ++ EL RQ + R I K I+ ARA GDLSEN YQAA+E Q NEGR+ EL Sbjct: 9 LTQEAFDTLKDELAHRQGQYREEITKRIAAARAEGDLSENGGYQAAREEQAKNEGRINEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + A +++ ++ G+ V+L + +G + Y + G ++ V + ++S S Sbjct: 69 TVKLRNATIVEAPKAG--KVGNGSLVTL--ELAGREMTYAL-GSRDIKVATKYDVISPES 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A++G GD +S AP G Sbjct: 124 PIGAAILGANEGDTVSYKAPNG 145 >gi|187918011|ref|YP_001883574.1| transcript cleavage factor/unknown domain fusion protein [Borrelia hermsii DAH] gi|119860859|gb|AAX16654.1| transcription elongation factor GreA [Borrelia hermsii DAH] Length = 901 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 68/124 (54%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L I A Sbjct: 754 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMLEIDVA 813 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+D + + FG V+++ K++G ++ Y I G E++ G++S SP L+ Sbjct: 814 KVVDTKELQSSVVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDA 873 Query: 134 ELGD 137 + GD Sbjct: 874 KEGD 877 >gi|325982789|ref|YP_004295191.1| transcription elongation factor GreB [Nitrosomonas sp. AL212] gi|325532308|gb|ADZ27029.1| transcription elongation factor GreB [Nitrosomonas sp. AL212] Length = 182 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ E + +RP ++K I+ A + GD SEN +Y K+ + R+ L Sbjct: 29 ITPDGYQRLRDEFDQLWKVDRPELVKTITWAASNGDRSENGDYIYGKKRLREIDRRLRFL 88 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D S ++ FGATV++ + +K+ Y IVG EA+ G +S SP Sbjct: 89 SRRLDSAEIVDPSQRGECHQVFFGATVTVCNAQN-EKQTYSIVGMDEAEPGCGRISWISP 147 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+AL+ GD+++++ PGG + E+++V + Sbjct: 148 LAKALLKAHEGDVVTLHTPGGVEELEVIEVHY 179 >gi|145589258|ref|YP_001155855.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047664|gb|ABP34291.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T G ++I+ EL +RP ++K + A + GD SEN +Y K+ + Sbjct: 1 MEEKNYITPVGHERIKTELLQLLNLDRPEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDR----IAFGATVS---LVEKNSGDKKNYQIVGDQE 112 R+ L + A V+D S SGD+ I FGATV+ L ++G + IVG E Sbjct: 61 RRIRFLNQRLEFAVVVDNSARKSGDQDAEQIFFGATVTYSPLKGADAGKEITITIVGVDE 120 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 D++ VS SPIA+ALI LGD + + P G EIL+V ++ Sbjct: 121 VDLEKNHVSWVSPIAKALIKARLGDCVKIQTPTGPTEIEILEVQYL 166 >gi|219685364|ref|ZP_03540183.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii Far04] gi|219673137|gb|EED30157.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii Far04] Length = 900 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DSKEGD 876 >gi|219684768|ref|ZP_03539710.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii PBr] gi|219671713|gb|EED28768.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii PBr] Length = 900 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DSKEGD 876 >gi|51598396|ref|YP_072584.1| transcript cleavage factor/unknown domain fusion protein [Borrelia garinii PBi] gi|51572967|gb|AAU06992.1| transcription elongation factor [Borrelia garinii PBi] Length = 900 Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 68/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DSKEGD 876 >gi|254443766|ref|ZP_05057242.1| transcription elongation factor GreA domain protein [Verrucomicrobiae bacterium DG1235] gi|198258074|gb|EDY82382.1| transcription elongation factor GreA domain protein [Verrucomicrobiae bacterium DG1235] Length = 617 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 72/128 (56%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P +AI+EAR GDL EN+EY+ AK+ Q + R LE I RA++ D ++ + + I Sbjct: 483 PENSQAIAEARELGDLKENSEYKMAKQDQQILMSRRNLLEADIKRAQITDFTSATTETIG 542 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G V+L ++ G + Y ++G + D + ++S +P+ ++++GK +GD +SV E Sbjct: 543 IGNIVTLKDEKDGSEVTYTLLGAWDGDPDNFIISYLTPLGKSMLGKRIGDEVSVTVGSTE 602 Query: 148 KTYEILQV 155 I + Sbjct: 603 NKLTITDI 610 >gi|301628310|ref|XP_002943300.1| PREDICTED: transcription elongation factor greB-like [Xenopus (Silurana) tropicalis] Length = 154 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + ++ EL + ERP+++ +S A GD SEN +Y K+ + R+ L Sbjct: 1 MTPAGLESLRSELNHLSRSERPKVVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I A+V+D + G +R+ FGATV+ + +++ +VG EAD++ +S SP Sbjct: 61 TKRIESAKVVDPAEQQGLERVFFGATVTYANQRD-EERTVTLVGVDEADMEQSKISWRSP 119 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL +GD + + P G + E++ + + Sbjct: 120 VARALFKAGIGDEVLLRTPAGTERLEVIAIAY 151 >gi|321310951|ref|YP_004193280.1| transcription elongation factor GreA [Mycoplasma haemofelis str. Langford 1] gi|319802795|emb|CBY93441.1| transcription elongation factor GreA [Mycoplasma haemofelis str. Langford 1] Length = 157 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + + ++ E +R +I+ I ARA GDLSENA+Y+ A + Q + EGR+AE+ Sbjct: 6 LTVESLENLKAEYNNLVNVDRVEVIEEIKAARANGDLSENADYETALDKQKVIEGRIAEI 65 Query: 67 ENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + I+ E+I + +T S + G+ V ++E + + Y+I+G + + G +S Sbjct: 66 KAILDNHEIISSEGTTDSSGVVKIGSKVKILEMDENVEFEYEILGSVDNNPSMGRISNEC 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+A+A++GK+ G+++ V +ILQ+L Sbjct: 126 PLAKAMLGKKAGEVVEVQNIAVPYKVKILQIL 157 >gi|207110701|ref|ZP_03244863.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_CA4C1] Length = 84 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 56/84 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDR 85 R+ +L I+ A+VID S ++ ++ Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNK 84 >gi|297243708|ref|ZP_06927639.1| YhbC family protein [Gardnerella vaginalis AMD] gi|296888459|gb|EFH27200.1| YhbC family protein [Gardnerella vaginalis AMD] Length = 159 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 7/144 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ Sbjct: 7 ILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122 EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S Sbjct: 67 ELIVKLRNAKILEAP--KDGTVGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SPI A++G GD +S AP G Sbjct: 122 ESPIGAAIMGAHTGDTVSYAAPNG 145 >gi|223986210|ref|ZP_03636228.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM 12042] gi|223961824|gb|EEF66318.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM 12042] Length = 156 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI VT +G +++++E R +I+ + ARA GDLSENA+Y AA++ Q E R Sbjct: 4 DKIYVTQEGLEELKKEQENLIHVVRQEVIEDLKAARAQGDLSENADYDAARDRQAQVEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE ++ E+ID S G+TV + E ++ + IVG EAD +G +S Sbjct: 64 IRELEVMLNNIEIIDDKQGSVRVAKIGSTVKIEELDTHQIDEFTIVGSVEADPLNGKLSN 123 Query: 123 SSPIARALIGKELGDIIS--VNAPGGEKTYEI 152 +P+A A++ ++G + V+ P K EI Sbjct: 124 VTPLAEAILEHKVGQTVEVLVDEPYQVKILEI 155 >gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus HN001] gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] gi|258538438|ref|YP_003172937.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc 705] gi|199591181|gb|EDY99262.1| transcription elongation factor GreA [Lactobacillus rhamnosus HN001] gi|229315800|gb|EEN81773.1| transcription elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|257147178|emb|CAR86151.1| Transcription elongation factor [Lactobacillus rhamnosus GG] gi|257150114|emb|CAR89086.1| Transcription elongation factor [Lactobacillus rhamnosus Lc 705] gi|259648617|dbj|BAI40779.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] Length = 165 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 9/154 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK EL+ L Sbjct: 1 MVTYHEITPAGLANLKQEVA-DLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I A+V +T + +A G V+L + D+ Y++VG EA + + Sbjct: 59 EGRLRYLDKLIRYAKV---TTPAAANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAA 115 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 ++I+SP+ A+ +GD ++V AP G TY++ Sbjct: 116 KLAINSPLGAAVRRHHVGDTVTVTAPSG--TYQV 147 >gi|156740036|ref|YP_001430165.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM 13941] gi|229485906|sp|A7NFC5|GREA_ROSCS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|156231364|gb|ABU56147.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM 13941] Length = 157 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ E+++I+ RA++ID S + G+ V++ +++ + IVG EA G Sbjct: 61 EGRIREIKSILARAQIIDEENGSNHEVRIGSRVTVRIDGEHEEETWTIVGSTEAKPSEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI AL+GK ++V P G IL + Sbjct: 121 ISNESPIGAALLGKRPSQQVTVETPSGTMKLTILNI 156 >gi|150015636|ref|YP_001307890.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB 8052] gi|149902101|gb|ABR32934.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB 8052] Length = 154 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 8/154 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENIKKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACRNYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +I+ A VID ++ D+ G A + VE + D+ +V + D ++ ++SI Sbjct: 65 LTMISTATVIDDGSI--DKSVLGINSKARIRFVEDD--DEVVVTLVTTMDLDPENMIISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL G + GDI+ VNAPG + + EIL+VL Sbjct: 121 ESDLGKALSGNKAGDIVEVNAPGEKYSVEILEVL 154 >gi|226941107|ref|YP_002796181.1| transcription elongation factor GreB [Laribacter hongkongensis HLHK9] gi|226716034|gb|ACO75172.1| GreB [Laribacter hongkongensis HLHK9] Length = 185 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++ EL ERP + + ++ A GD SEN +Y K + R+ L Sbjct: 31 LTPAGWQRMKDELYRLVNHERPEVTQVVNWAAGNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D D++ FGATV ++ + G ++ IVG E D+ G +S SP Sbjct: 91 TKRLEIAEVVDPERREATDQVFFGATVVML-RGDGSEQTVSIVGVDELDLSRGHISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IAR L+ GD++ P GE+ EIL+V Sbjct: 150 IARTLLKAREGDVVWFRGPDGEEEIEILEV 179 >gi|119478768|ref|ZP_01618607.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2143] gi|119448347|gb|EAW29602.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2143] Length = 167 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ E+ + ERP + + EA GD SEN +Y K + R+ L Sbjct: 15 ITPEGEKALRAEVYQLWKIERPEVTAVVHEAAKNGDRSENGDYIYGKRRMREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E++D + D I FGA V+ VE + K++Y+IVG E D+ S +S+ SP+ Sbjct: 75 TKRLDSVEIVDRTPADKDIIYFGAWVT-VEDEAESKQSYRIVGPDEFDLASNKLSMDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+GK + D I P G++ I +V + Sbjct: 134 AKALLGKRVEDEILFKTPEGQRELYISEVWY 164 >gi|94499115|ref|ZP_01305653.1| transcription elongation factor GreB [Oceanobacter sp. RED65] gi|94428747|gb|EAT13719.1| transcription elongation factor GreB [Oceanobacter sp. RED65] Length = 163 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL + + ERP++ + + +A A GD SENAEY K+ + R+ L Sbjct: 7 ITPEGEQTLKDELDYLWRTERPKVTQQVKDAAALGDRSENAEYIYGKKRLREIDRRVRFL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + V+ ++ F A + +E G Y+IVG E D + +SI+SP+ Sbjct: 67 SKRLEKLTVVRDKPADQTKVFFSAWIQ-IENEQGQVHIYRIVGPDEIDHRPEYISINSPV 125 Query: 127 ARALIGKELGDIISVNAPGG 146 A+AL+GK+ GD ++V P G Sbjct: 126 AKALLGKQAGDDVAVQTPKG 145 >gi|227497804|ref|ZP_03927989.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM 15434] gi|226832764|gb|EEH65147.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM 15434] Length = 165 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 15/149 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL RQ+ +R I + + AR GDL ENA Y AA+E LNE R+A+L Sbjct: 14 LTKDAYDRLTAELARRQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEARIAQL 73 Query: 67 ENIITRA---EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSG--L 119 ++ +A EV D T+S ++V G K+ +G QE ADV G + Sbjct: 74 TELLEKAEIGEVADDGTVSAG--------TIVTAKIGAKEQVFALGGQEITADVPEGVKV 125 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148 S +P+ +AL+G + G+ +S AP G++ Sbjct: 126 FSPDAPLGKALMGHKAGETVSYQAPNGKE 154 >gi|239621777|ref|ZP_04664808.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514968|gb|EEQ54835.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 159 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAARETQSKNEGRITEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI +A+ G ++GD++S AP G Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145 >gi|224534276|ref|ZP_03674854.1| transcription elongation factor GreA [Borrelia spielmanii A14S] gi|224514378|gb|EEF84694.1| transcription elongation factor GreA [Borrelia spielmanii A14S] Length = 900 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 67/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G + Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEITGKDETYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 + GD Sbjct: 871 DSKEGD 876 >gi|283783053|ref|YP_003373807.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Gardnerella vaginalis 409-05] gi|298253524|ref|ZP_06977314.1| YhbC family protein [Gardnerella vaginalis 5-1] gi|283441369|gb|ADB13835.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Gardnerella vaginalis 409-05] gi|297532291|gb|EFH71179.1| YhbC family protein [Gardnerella vaginalis 5-1] Length = 159 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 7/144 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ Sbjct: 7 ILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122 EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S Sbjct: 67 ELIVKLRNAKILEAP--KDGTVGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SPI A++G GD +S AP G Sbjct: 122 ESPIGAAIMGAHAGDTVSYAAPNG 145 >gi|83313517|ref|YP_423781.1| transcription elongation factor GreB [Magnetospirillum magneticum AMB-1] gi|82948358|dbj|BAE53222.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 182 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ L Sbjct: 33 QGFAALKAELSHLHKIERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFLTKR 92 Query: 70 ITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSPIA 127 + A V+D D+I FGATV+ N+ D++ IVG EAD++ GL+S SP+A Sbjct: 93 MESAHVVDPEQQKKRDQIFFGATVTYA--NARDEEITVTIVGIDEADLEKGLISWISPVA 150 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+ GD + V P G + E++ + + Sbjct: 151 RALLKAAEGDSVPVRTPSGVEMIEVVAISY 180 >gi|187934761|ref|YP_001886308.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] gi|187722914|gb|ACD24135.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] Length = 154 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 79/150 (52%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKNLREELDYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 N+I+ A +ID T+ + + + D+ +V + D ++ +SI S + Sbjct: 65 MNMISTATIIDSETIDKSVLGINSKAKIKFIEDEDETIITLVTTMDLDPEAMRISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL GK+ GDI+ VNAPG EIL++L Sbjct: 125 GKALTGKKQGDIVEVNAPGENYKVEILEIL 154 >gi|111114955|ref|YP_709573.1| transcript cleavage factor/unknown domain fusion protein [Borrelia afzelii PKo] gi|216263923|ref|ZP_03435917.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia afzelii ACA-1] gi|110890229|gb|ABH01397.1| transcription elongation factor [Borrelia afzelii PKo] gi|215979967|gb|EEC20789.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia afzelii ACA-1] Length = 900 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 67/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGD 137 GD Sbjct: 871 DSREGD 876 >gi|291456474|ref|ZP_06595864.1| putative transcription elongation factor GreA [Bifidobacterium breve DSM 20213] gi|291381751|gb|EFE89269.1| putative transcription elongation factor GreA [Bifidobacterium breve DSM 20213] Length = 159 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 88/144 (61%), Gaps = 11/144 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRITEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSI 122 + +++I+ + + G+ V+ +E N G++ Y ++G + D+ +G +++ Sbjct: 69 TVKLRDSKIIENAPEG--TVGNGSVVT-IELN-GNEMTY-VLGSR--DIVAGTDYEIMTP 121 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 SPI RA+ G ++GD +S AP G Sbjct: 122 DSPIGRAIEGAKVGDTVSYTAPNG 145 >gi|23465584|ref|NP_696187.1| transcription elongation factor GreA [Bifidobacterium longum NCC2705] gi|189439631|ref|YP_001954712.1| transcription elongation factor [Bifidobacterium longum DJO10A] gi|213692643|ref|YP_002323229.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296453851|ref|YP_003660994.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. longum JDM301] gi|312133029|ref|YP_004000368.1| grea [Bifidobacterium longum subsp. longum BBMN68] gi|317481865|ref|ZP_07940892.1| prokaryotic transcription elongation factor [Bifidobacterium sp. 12_1_47BFAA] gi|322688807|ref|YP_004208541.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis 157F] gi|322690797|ref|YP_004220367.1| transcription elongation factor GreA [Bifidobacterium longum subsp. longum JCM 1217] gi|23326251|gb|AAN24823.1| transcription elongation factor GreA [Bifidobacterium longum NCC2705] gi|189428066|gb|ACD98214.1| Transcription elongation factor [Bifidobacterium longum DJO10A] gi|213524104|gb|ACJ52851.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517127|emb|CBK70743.1| Transcription elongation factor [Bifidobacterium longum subsp. longum F8] gi|296183282|gb|ADH00164.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. longum JDM301] gi|311774017|gb|ADQ03505.1| GreA [Bifidobacterium longum subsp. longum BBMN68] gi|316916656|gb|EFV38051.1| prokaryotic transcription elongation factor [Bifidobacterium sp. 12_1_47BFAA] gi|320455653|dbj|BAJ66275.1| transcription elongation factor GreA [Bifidobacterium longum subsp. longum JCM 1217] gi|320458793|dbj|BAJ69414.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460143|dbj|BAJ70763.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis 157F] Length = 159 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRITEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI +A+ G ++GD++S AP G Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145 >gi|216264351|ref|ZP_03436343.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 156a] gi|221217376|ref|ZP_03588847.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi 72a] gi|224533979|ref|ZP_03674563.1| transcription elongation factor GreA [Borrelia burgdorferi CA-11.2a] gi|215980824|gb|EEC21631.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 156a] gi|221192654|gb|EEE18870.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi 72a] gi|224512815|gb|EEF83182.1| transcription elongation factor GreA [Borrelia burgdorferi CA-11.2a] Length = 901 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 68/127 (53%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 SLNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEI 810 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L Sbjct: 811 ENAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENL 870 Query: 131 IGKELGD 137 + GD Sbjct: 871 LDSREGD 877 >gi|319638512|ref|ZP_07993274.1| transcription elongation factor greB [Neisseria mucosa C102] gi|317400261|gb|EFV80920.1| transcription elongation factor greB [Neisseria mucosa C102] Length = 163 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D+I FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPEAREATDQIFFGATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR+LI GD + +N P G++ EIL V +I Sbjct: 128 LARSLIKAREGDEVVLNTPEGQEVIEILSVEYI 160 >gi|254669933|emb|CBA04519.1| transcription elongation factor GreA [Neisseria meningitidis alpha153] Length = 72 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 50/71 (70%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FG TV+L + + + YQIVG+ EAD++ G + + SPIARALIGKE GD V APGG Sbjct: 2 FGTTVTLEDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGV 61 Query: 148 KTYEILQVLWI 158 + Y+I++V +I Sbjct: 62 REYDIIEVRYI 72 >gi|325474603|gb|EGC77789.1| transcription elongation factor [Treponema denticola F0402] Length = 901 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 82/149 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+ Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L + G+ + +++Y+I+ + Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895 >gi|221135013|ref|ZP_03561316.1| transcription elongation factor [Glaciecola sp. HTCC2999] Length = 159 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++E + + ER I K ++ A GD S+NA+YQ K R+ L Sbjct: 8 ITPNGYRLLKEEEDYLWRVERHEITKKVTWAAGLGDRSDNADYQTNKRRLRQIHSRVRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S ++ FGA V+L E G+ K QIVG E + SI SP+ Sbjct: 68 RKRMEALTVVSPSPEQVGKVYFGAWVTL-ETEEGEVKKVQIVGSDEIYKHTSPCSIDSPL 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARA++GK + D VN P G Y IL + Sbjct: 127 ARAMVGKTIDDEAVVNMPDGPIYYTILAI 155 >gi|182418041|ref|ZP_02949346.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237666078|ref|ZP_04526066.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378096|gb|EDT75632.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237659025|gb|EEP56577.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 154 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTQENMKKLQDELEYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID + + + + +++ +V + D ++ ++SI S + Sbjct: 65 MTMISTATVIDDEDQDKSVLGINSKAKVKFIDDDEEEIITLVTTMDLDPENMMISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ALIGK+ G+I+ V APG + + EIL++L Sbjct: 125 GKALIGKKAGEIVEVEAPGDKYSVEILEIL 154 >gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC 5462] Length = 165 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 9/154 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK EL+ L Sbjct: 1 MVTYHEITPAGLANLKQEVA-DLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I A+V +T + +A G V+L + D+ Y++VG EA + + Sbjct: 59 EGRLRYLDKLIRYAKV---TTPAAANLADIGNWVTLKFDDDQDEDTYELVGPAEAGMGAA 115 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 ++I+SP+ A+ +GD ++V AP G TY++ Sbjct: 116 KLAINSPLGAAVRRHYVGDTVTVTAPSG--TYQV 147 >gi|325142644|gb|EGC65035.1| transcription elongation factor greA [Neisseria meningitidis 961-5945] Length = 72 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 37/72 (51%), Positives = 56/72 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRA 73 R++ELE+ ++ A Sbjct: 61 RISELEHKLSVA 72 >gi|300087971|ref|YP_003758493.1| GreA/GreB family elongation factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527704|gb|ADJ26172.1| GreA/GreB family elongation factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 271 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 R +++R +++ I +A A DL ENA Y AA+E + +G++AELE ++ +A V + Sbjct: 136 RLKDKRVEVVEEIKKAAADKDLKENAPYHAAREEKAKLDGKIAELEMMLKQAVVQEKHMT 195 Query: 82 SGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 SG + + G V++ SG +++V +E D ++G +S +SPI +A++G+ +GD + Sbjct: 196 SGKKKVEVGRQVTVTNLASGQVTKFKLVIAREVDPKNGCISPASPIGKAIMGRYIGDTVE 255 Query: 141 VNAPGGEKTYEI 152 V AP Y I Sbjct: 256 VVAPACTNRYCI 267 >gi|42528195|ref|NP_973293.1| transcript cleavage factor/unknown domain fusion protein [Treponema denticola ATCC 35405] gi|41819465|gb|AAS13212.1| transcription elongation protein, GreA/GreB family [Treponema denticola ATCC 35405] Length = 901 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 84/154 (54%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V + VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q Sbjct: 742 VHGLIVTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGN 801 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S Sbjct: 802 ALTRLQDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIIS 861 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ L + G+ + +++Y+I+ + Sbjct: 862 YMSPLGNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895 >gi|257093983|ref|YP_003167624.1| transcription elongation factor GreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046507|gb|ACV35695.1| transcription elongation factor GreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 188 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL + ERP+++ + A + GD SENA+Y K + R+ L Sbjct: 33 ITPGGHARLRSELEHLLRVERPQVVGVVQWAASNGDRSENADYIYGKRRLREIDRRIRFL 92 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE++D + + +++ FGATV++ ++ G + YQIVG E D G +S SP Sbjct: 93 TRRLDLAEIVDPARRENTEQVFFGATVTICDEQ-GLENTYQIVGVDETDSARGHISWVSP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ GD + ++P G + E++ V Sbjct: 152 LARALLKAREGDTVRFHSPLGWRQVEVVAV 181 >gi|192360004|ref|YP_001981507.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107] gi|190686169|gb|ACE83847.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107] Length = 157 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GFD +Q+EL + ERP + K +S A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITRQGFDDLQKELDELWRVERPDVTKKVSWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V++ ++ FGA V VE + G +++VG E + +SI SP+ Sbjct: 66 RKCLENLKVVEYRPEQEGKVFFGAWVE-VENDEGKTLTFRVVGYDEIFNRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K + D V G T+ I Sbjct: 125 ARALLKKAVDDEAIVATEAGTVTWYI 150 >gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|38257536|sp|Q88ZS9|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName: Full=Transcript cleavage factor greA 1 gi|28269986|emb|CAD62886.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] Length = 156 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L Sbjct: 8 MTAAGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ D++ G V++ + D+ YQ+VG QEA+++ +S +SPI Sbjct: 67 NKQLQYAQIV--QPADNDQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL + D+++VNAP G +++ V Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAV 153 >gi|226321957|ref|ZP_03797482.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26] gi|226232547|gb|EEH31301.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26] Length = 901 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 67/126 (53%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + + ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTDKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGD 137 GD Sbjct: 872 DSREGD 877 >gi|227546182|ref|ZP_03976231.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213163|gb|EEI81035.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 159 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRIIEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI +A+ G ++GD++S AP G Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145 >gi|302874290|ref|YP_003842923.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B] gi|307689446|ref|ZP_07631892.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302577147|gb|ADL51159.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B] Length = 154 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTLENMKKLQEELEYRMTVKRAEIAKEKLIAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +I+ A +ID T+ + A V +E + D +V + D ++ +SI S Sbjct: 65 LTMISTATLIDEHTVDKSTLGINTKAKVRFIEDDYEDV--LTLVTTMDLDPENMYISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL GK+ G+I++VNAP T EIL++L Sbjct: 123 DLGKALSGKKAGEIVTVNAPEDIYTVEILEIL 154 >gi|270158321|ref|ZP_06186978.1| transcription elongation factor GreB [Legionella longbeachae D-4968] gi|289163433|ref|YP_003453571.1| transcription elongation factor [Legionella longbeachae NSW150] gi|269990346|gb|EEZ96600.1| transcription elongation factor GreB [Legionella longbeachae D-4968] gi|288856606|emb|CBJ10413.1| transcription elongation factor [Legionella longbeachae NSW150] Length = 181 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF +Q ELR ERP I+K +S A + GD SEN +Y K+ + R+ L Sbjct: 29 MTPNGFAMLQAELRNLISNERPEIVKVVSWAASNGDRSENGDYIYGKKRLREIDRRIRYL 88 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+++D G ++ FGATV + +N G+ +IVG EAD+ G +S SP Sbjct: 89 TKRLESAQIVDPKLQVGLTQVFFGATVQYINEN-GESHCVKIVGLDEADINEGKISWVSP 147 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +A+ L+ ++GD ++ E + + +I Sbjct: 148 LAKTLLKAKVGDHRTLRVGDKECHLTVTHISYI 180 >gi|218461137|ref|ZP_03501228.1| hypothetical protein RetlK5_17212 [Rhizobium etli Kim 5] Length = 44 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/44 (75%), Positives = 41/44 (93%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLS Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLS 44 >gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 187 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L Sbjct: 39 MTSTGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 97 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ +++ G V++ + D+ YQ+VG QEA+++ +S +SPI Sbjct: 98 NKQLQYAQIV--QPADNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 155 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL + D+++VNAP G +++ V Sbjct: 156 GQALANHTVDDVVTVNAPNGAYQVKVIAV 184 >gi|226322649|ref|ZP_03798167.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758] gi|225208986|gb|EEG91340.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758] Length = 167 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E++ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTESDVKKIEEEIQHRKHVIRKEAIEAVKEARAQGDLSENFEYHAAKKYKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE++ ++ G V++ +++ Y++V + +S SPI Sbjct: 65 ERMLKNAEIVSDTSEEG-VAGINNRVTVYFPEDDEEETYKLVTSIRGNSIHNYISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +A+ G + G+ + V + +YE++ Sbjct: 124 GKAIFGHKAGETVKVKV-SDDYSYELV 149 >gi|94971605|ref|YP_593653.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] gi|94553655|gb|ABF43579.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] Length = 212 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++ E R+ ERP +++ + A GD S+NA+Y+ K +GR+ L Sbjct: 22 ITPGGLERLKDEHRFLLTRERPAVVEVVQWAAGNGDRSDNADYRYGKRRLRQIDGRIRFL 81 Query: 67 ENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 I AE++D + + R FGATV E +G ++ IVG E D+ +S Sbjct: 82 SKRIEAAELVDPERPRTGQAATRAFFGATVRY-ENAAGVERVVSIVGVDEVDLSRNHISW 140 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ RAL GD + + APGG + +L+V + Sbjct: 141 MSPLGRALTKSAEGDSVVLKAPGGTEELTVLEVRY 175 >gi|217976361|ref|YP_002360508.1| transcription elongation factor GreB [Methylocella silvestris BL2] gi|217501737|gb|ACK49146.1| transcription elongation factor GreB [Methylocella silvestris BL2] Length = 181 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++Q E + ERP+I++ ++ A GD SEN +Y K + RM L Sbjct: 31 ITPEGLRRMQDEFDRLHRIERPKIVETVTWAAGNGDRSENGDYIYGKRRLREIDRRMRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGLVSISS 124 + AEV+D + + DR+ FGA V +N+ ++ K +IVG EA + VS S Sbjct: 91 RKRMEIAEVVDPARQTNRDRVFFGAKVEY--RNARNEMKTLRIVGVDEARSELSEVSWIS 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIA++L+ E GD++ V P G + EI+++ + Sbjct: 149 PIAKSLLKAEEGDVVEVKTPKGTERIEIVKISY 181 >gi|91787228|ref|YP_548180.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] gi|91696453|gb|ABE43282.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] Length = 190 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+++++ EL ERP++++ + A + GD SEN +Y K+ + R+ L Sbjct: 29 ITPVGYERLRAELLDLIDNERPKVVEIVHWAASNGDRSENGDYHYGKKRLREIDRRIRFL 88 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE+ + S G D++ FGATV+ V+ + G+++ I+G EA+ G +S SP Sbjct: 89 TQRLEIAEISNPSIHHGSDQVFFGATVTYVD-DRGEERTVTILGIDEANSALGQISWISP 147 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ +GD +++ P G + E+L+V Sbjct: 148 AARALLKSRVGDEVNLVTPQGLQVLEVLKV 177 >gi|319943395|ref|ZP_08017677.1| transcription elongation factor GreB [Lautropia mirabilis ATCC 51599] gi|319743210|gb|EFV95615.1| transcription elongation factor GreB [Lautropia mirabilis ATCC 51599] Length = 186 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL ERP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 32 ITRAGYQALRDELSHLLDVERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I RAEV++ S G D++ FGATV+ E + G ++ QIVG E D +G +S SP Sbjct: 92 IRRIDRAEVVEPSAHHGNDQVFFGATVTYSEPD-GTERRVQIVGVDETDPLAGKISWVSP 150 Query: 126 IARALIGKELGDIISVNAPGG 146 +ARALI GD +S+ P G Sbjct: 151 VARALIKAREGDEVSLMTPQG 171 >gi|56459393|ref|YP_154674.1| GreB [Idiomarina loihiensis L2TR] gi|56178403|gb|AAV81125.1| GreB [Idiomarina loihiensis L2TR] Length = 159 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+QQEL + ER ++ +S A + GD SENA+Y+ K+ +GR+ L Sbjct: 6 ITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRKIDGRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ S ++ FGA V +E + + +QIVG E + VSI SP+ Sbjct: 66 TKRLEQVKVVYYSPQQDGKVFFGAWVE-IEDEEENVRAFQIVGPDEIYDRKDAVSIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ K++ D V G +T+ I Sbjct: 125 ARALLKKQVDDEAEVTTQQGTRTWFI 150 >gi|226228266|ref|YP_002762372.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27] gi|226091457|dbj|BAH39902.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27] Length = 161 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 71/125 (56%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93 I +A GDL EN+EY+AA E Q + R+ +L +T+ IDI+ + GDR+ G+ V Sbjct: 28 IRKAVELGDLKENSEYKAALERQQFVQARLGQLTQRVTKLANIDITQIPGDRVGLGSKVI 87 Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 + + S ++ Y++V ++ G V++ SPI RAL GK +G+ + P + +I+ Sbjct: 88 VEDLQSKARETYELVFGDAGELHDGHVTMGSPIGRALQGKSVGEEAILKLPTRIRKLQIV 147 Query: 154 QVLWI 158 ++ I Sbjct: 148 ELQTI 152 >gi|56478200|ref|YP_159789.1| transcription elongation factor GreB [Aromatoleum aromaticum EbN1] gi|56314243|emb|CAI08888.1| transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 186 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 93/155 (60%), Gaps = 3/155 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ +++EL + ERP++++ ++ A + GD SEN +Y K+ + R+ L Sbjct: 32 MTRRGYESLRRELDHLVRIERPKMVETVAWAASNGDRSENGDYIYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSGLVSIS 123 I AEV+D + D++ FGATVS+V+ +S D +QIVG EAD +G +S Sbjct: 92 IKRIESAEVVDPADQREIDQVFFGATVSIVDVDSDDDSEQIWQIVGVDEADAGAGRISWI 151 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ GD++ +P G + E++++ ++ Sbjct: 152 SPLARALLKAREGDVVRFMSPAGPREIEVVEIRYV 186 >gi|331083573|ref|ZP_08332684.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403784|gb|EGG83336.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium 6_1_63FAA] Length = 167 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE++ + D + + ++ + + Y++V + +SI SP+ Sbjct: 65 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 123 Query: 127 ARALIGKELGDI--ISVNAPGG 146 +A++G GD + +N G Sbjct: 124 GKAILGHREGDRVWVKINESAG 145 >gi|260587256|ref|ZP_05853169.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] gi|260542451|gb|EEX23020.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] Length = 169 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 7 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE++ + D + + ++ + + Y++V + +SI SP+ Sbjct: 67 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 125 Query: 127 ARALIGKELGDI--ISVNAPGG 146 +A++G GD + +N G Sbjct: 126 GKAILGHREGDRVWVKINESAG 147 >gi|167947983|ref|ZP_02535057.1| Prokaryotic transcription elongation factor GreA/GreB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 52/66 (78%) Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151 + ++E ++ ++ +QIVGD EAD++SGL+S+SSPIARALIGK GD +++ PGG + +E Sbjct: 1 MDVIELDNNEEHTFQIVGDDEADIKSGLISVSSPIARALIGKAEGDEVNLETPGGLREFE 60 Query: 152 ILQVLW 157 +L++ + Sbjct: 61 VLEIRY 66 >gi|307825791|ref|ZP_07656007.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] gi|307733099|gb|EFO03960.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] Length = 166 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRM 63 +T +G+ ++ ELR W +++E + +A+S A A GD SENAEY KEL+ ++ R+ Sbjct: 15 ITPEGYQSLEIELRDLWTKRKE---VTQALSAAAAEGDRSENAEYIYRKKELRGIDR-RI 70 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L+ + ++ DRI F A V+L E +G++ Y+IVG E + + +S+ Sbjct: 71 HYLQKRLPSLNIVSQPPDDQDRIFFSAWVTL-ENEAGEEVTYRIVGADELNPKKHYISLD 129 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ARAL+ K D +++ E Y ++ + Sbjct: 130 SPLARALLKKTFDDAVAIKNELKETRYTVVDI 161 >gi|298345920|ref|YP_003718607.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|304390376|ref|ZP_07372329.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654508|ref|ZP_07907414.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC 51333] gi|315657583|ref|ZP_07910465.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235981|gb|ADI67113.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|304326132|gb|EFL93377.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490972|gb|EFU80591.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC 51333] gi|315492055|gb|EFU81664.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 161 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 11/146 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD++Q EL R R I K I AR GDL EN Y AA++ Q+ NE R+ EL Sbjct: 10 MTQASFDRLQAELDERTGPIRSEITKKIDAARREGDLKENGGYHAARDEQSQNETRILEL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----DVQSGLVSI 122 + I+ AEV + +T I G S+VE G KK ++G ++A D+Q + S Sbjct: 70 QEILKYAEVGEAATDG--TIGPG---SVVEAKVGPKKMTFLLGSRDAAKGMDIQ--VFSP 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148 +P+ AL G GD + AP G+K Sbjct: 123 DAPLGVALAGHRTGDTVEYVAPTGKK 148 >gi|325989739|ref|YP_004249438.1| transcription elongation factor GreA [Mycoplasma suis KI3806] gi|323574824|emb|CBZ40484.1| Transcription elongation factor GreA [Mycoplasma suis] Length = 161 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 7/155 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++ E+ Sbjct: 9 ITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKVQEI 68 Query: 67 ENIITRAEVIDI--STMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E I+ +ID S+ G+++ G+ V + + + Y+I+G +AD + +S Sbjct: 69 EAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKISNE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTY--EILQVL 156 SPIA+ ++GK +G V G +K+Y +IL++L Sbjct: 129 SPIAKTIMGKPVGGTYQVE--GLKKSYYIKILEIL 161 >gi|325973303|ref|YP_004250367.1| transcription elongation factor GreA [Mycoplasma suis str. Illinois] gi|323651905|gb|ADX97987.1| transcription elongation factor GreA [Mycoplasma suis str. Illinois] Length = 158 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 7/155 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++ E+ Sbjct: 6 ITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKVQEI 65 Query: 67 ENIITRAEVIDI--STMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E I+ +ID S+ G+++ G+ V + + + Y+I+G +AD + +S Sbjct: 66 EAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKISNE 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTY--EILQVL 156 SPIA+ ++GK +G V G +K+Y +IL++L Sbjct: 126 SPIAKTIMGKPVGGTYQVE--GLKKSYYIKILEIL 158 >gi|331091714|ref|ZP_08340548.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403471|gb|EGG83030.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium 2_1_46FAA] Length = 167 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 79/142 (55%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEEDIKKMEEEIEYRRLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A+++ + D + V + ++ + + +++V + +S SPI Sbjct: 65 QRMIRTAQIVSDDSKE-DEVGINKAVEVYFEDDDECETFKLVTTVRGNSIDNRISTESPI 123 Query: 127 ARALIGKELGD--IISVNAPGG 146 +A++G + GD + VN G Sbjct: 124 GKAILGHKAGDRVFVKVNENAG 145 >gi|15676587|ref|NP_273731.1| transcription elongation factor GreB [Neisseria meningitidis MC58] gi|34222642|sp|Q9K0C5|GREB_NEIMB RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|7225917|gb|AAF41107.1| transcription elongation factor GreB [Neisseria meningitidis MC58] gi|316983663|gb|EFV62644.1| transcription elongation factor GreB [Neisseria meningitidis H44/76] gi|325139932|gb|EGC62462.1| transcription elongation factor GreB [Neisseria meningitidis CU385] gi|325200625|gb|ADY96080.1| transcription elongation factor GreB [Neisseria meningitidis H44/76] Length = 163 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ ++ G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RDDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|300856704|ref|YP_003781688.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300436819|gb|ADK16586.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G K++ EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E R+ Sbjct: 4 VILTESGKKKLEDELEYLKTVKRVEIKLALKAARAQGDLSENADYDAAKDDQSMTETRIQ 63 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + A +I+ S+ D T + + + + +V EADV++ +SI S Sbjct: 64 ELEAQLKNAVIIE-SSSEADVFDINKTALVKFCDVDETEEVTLVSTVEADVKNMKISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152 P+ +AL ++G +V +P G +Y++ Sbjct: 123 PLGKALYKLKVGQKATVASPDG--SYDV 148 >gi|314966306|gb|EFT10405.1| transcription elongation factor GreA [Propionibacterium acnes HL082PA2] gi|315093472|gb|EFT65448.1| transcription elongation factor GreA [Propionibacterium acnes HL060PA1] gi|327327087|gb|EGE68868.1| transcription elongation factor GreA [Propionibacterium acnes HL103PA1] Length = 168 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN YQAA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYQAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G G+ AP G Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153 >gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 156 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L Sbjct: 8 MTATGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ +++ G V++ + D+ YQ+VG QEA+++ +S +SPI Sbjct: 67 NKQLQYAQIV--QPADNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL + D+++VNAP G +++ V Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAV 153 >gi|256372307|ref|YP_003110131.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008891|gb|ACU54458.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM 10331] Length = 160 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++ ++ +D + QEL + R I KAI ARA GDLSEN +Y AAK+ Q E Sbjct: 1 MSEVEISQATYDALVQELEELTTQGRIEIAKAIEAARALGDLSENGDYHAAKDAQGKMEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +++ I+ A V+ + + D + G V L + D ++Y + +E +VS Sbjct: 61 RIRQIQQILQSARVVS-ADLPTDEVRPGVVVGLRYEGEDDVEHYLVGSIEERHPGLEVVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SP+ AL+G +G + AP G +++++ Sbjct: 120 PTSPLGEALLGARVGAWVEYEAPRGTLKVQVVEI 153 >gi|90020882|ref|YP_526709.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] gi|89950482|gb|ABD80497.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] Length = 157 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL + ERP + K +S A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITPQGLKDLKAELDELWRVERPEVTKKVSWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V++ ++ FGA V VE + G+ ++IVG E + +SI +P+ Sbjct: 66 RKCIENLKVVEYHPDQEGKVFFGAWVE-VENDEGEVLTFRIVGYDEIFNRKNYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 ARAL+ KE+ D V G+ T+ I Sbjct: 125 ARALLKKEVDDEAVVRTEAGKTTWYI 150 >gi|238924211|ref|YP_002937727.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|238875886|gb|ACR75593.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|291524937|emb|CBK90524.1| Transcription elongation factor [Eubacterium rectale DSM 17629] gi|291529078|emb|CBK94664.1| Transcription elongation factor [Eubacterium rectale M104/1] Length = 167 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ K++ E+ +R+ R + + + ARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTANDIKKMEDEIEYRKLVVRKKALDDVKVARAQGDLSENFEYKAAKQFKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A VI + D + TV + ++ + + Y+IV + L+S SP+ Sbjct: 65 EKMIKTAVVISDES-KDDEVGMFNTVDVYFEDDDETETYKIVTTVRGNSLKNLISKESPL 123 Query: 127 ARALIGKELGDIISV 141 A+ G ++GD V Sbjct: 124 GAAIFGHKVGDRCEV 138 >gi|187250809|ref|YP_001875291.1| transcription elongation factor [Elusimicrobium minutum Pei191] gi|186970969|gb|ACC97954.1| Transcription elongation factor [Elusimicrobium minutum Pei191] Length = 156 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++ K ++K++++L + E + ++ I EA GDL ENAEY AAK Q Sbjct: 1 MEKYYLSRKNYEKLREDLTALK-EIKAKLSLEIGEAAQQGDLRENAEYAAAKSRQEETLV 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE + A++ D + GATV++ + ++ Y +VG E++ + GL+S Sbjct: 60 KIQDLEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A +++GK+ G+ P G+K Y+++++ + Sbjct: 120 VQSPLAVSILGKKEGEEFEAVLPKGKKMYKLVKLEY 155 >gi|261400370|ref|ZP_05986495.1| transcription elongation factor GreB [Neisseria lactamica ATCC 23970] gi|269209803|gb|EEZ76258.1| transcription elongation factor GreB [Neisseria lactamica ATCC 23970] Length = 163 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|121634487|ref|YP_974732.1| transcription elongation factor GreB [Neisseria meningitidis FAM18] gi|304388016|ref|ZP_07370187.1| transcription elongation factor GreB [Neisseria meningitidis ATCC 13091] gi|313668831|ref|YP_004049115.1| transcription elongation factor [Neisseria lactamica ST-640] gi|120866193|emb|CAM09933.1| putative transcription elongation factor [Neisseria meningitidis FAM18] gi|254670524|emb|CBA06313.1| Transcription elongation factor [Neisseria meningitidis alpha153] gi|254673612|emb|CBA09140.1| Transcription elongation factor [Neisseria meningitidis alpha275] gi|304337964|gb|EFM04103.1| transcription elongation factor GreB [Neisseria meningitidis ATCC 13091] gi|308388876|gb|ADO31196.1| putative transcription elongation factor [Neisseria meningitidis alpha710] gi|313006293|emb|CBN87756.1| putative transcription elongation factor [Neisseria lactamica 020-06] gi|325127803|gb|EGC50711.1| transcription elongation factor GreB [Neisseria meningitidis N1568] gi|325129850|gb|EGC52657.1| transcription elongation factor GreB [Neisseria meningitidis OX99.30304] gi|325131857|gb|EGC54557.1| transcription elongation factor GreB [Neisseria meningitidis M6190] gi|325133796|gb|EGC56452.1| transcription elongation factor GreB [Neisseria meningitidis M13399] gi|325136088|gb|EGC58698.1| transcription elongation factor GreB [Neisseria meningitidis M0579] gi|325137907|gb|EGC60482.1| transcription elongation factor GreB [Neisseria meningitidis ES14902] gi|325141938|gb|EGC64378.1| transcription elongation factor GreB [Neisseria meningitidis 961-5945] gi|325143923|gb|EGC66233.1| transcription elongation factor GreB [Neisseria meningitidis M01-240013] gi|325203776|gb|ADY99229.1| transcription elongation factor GreB [Neisseria meningitidis M01-240355] gi|325206467|gb|ADZ01920.1| transcription elongation factor GreB [Neisseria meningitidis M04-240196] gi|325207735|gb|ADZ03187.1| transcription elongation factor GreB [Neisseria meningitidis NZ-05/33] Length = 163 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|161869630|ref|YP_001598797.1| transcription elongation factor GreB [Neisseria meningitidis 053442] gi|296314716|ref|ZP_06864657.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC 43768] gi|161595183|gb|ABX72843.1| transcription elongation factor [Neisseria meningitidis 053442] gi|296838551|gb|EFH22489.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC 43768] Length = 163 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|325202515|gb|ADY97969.1| transcription elongation factor GreB [Neisseria meningitidis M01-240149] Length = 163 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|320532416|ref|ZP_08033252.1| putative transcription elongation factor GreA [Actinomyces sp. oral taxon 171 str. F0337] gi|320135363|gb|EFW27475.1| putative transcription elongation factor GreA [Actinomyces sp. oral taxon 171 str. F0337] Length = 161 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L Sbjct: 10 LTQEAYDRLSTELEHRKTAERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123 E + A++ + + D + A + K +G ++ + + G + DV G + S Sbjct: 70 EETLENAQIGE----AADDGSVSAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +P+ +AL+G GD +S AP G K EI++V Sbjct: 126 APLGQALMGHRAGDTVSYEAPTGRKIKAEIVKV 158 >gi|59800713|ref|YP_207425.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA 1090] gi|194097981|ref|YP_002001029.1| transcription elongation factor GreB [Neisseria gonorrhoeae NCCP11945] gi|239998449|ref|ZP_04718373.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|240013574|ref|ZP_04720487.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI18] gi|240016013|ref|ZP_04722553.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA6140] gi|240080154|ref|ZP_04724697.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|240112368|ref|ZP_04726858.1| transcription elongation factor GreB [Neisseria gonorrhoeae MS11] gi|240115108|ref|ZP_04729170.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID18] gi|240117391|ref|ZP_04731453.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID1] gi|240120643|ref|ZP_04733605.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID24-1] gi|240122948|ref|ZP_04735904.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID332] gi|240125199|ref|ZP_04738085.1| transcription elongation factor GreB [Neisseria gonorrhoeae SK-92-679] gi|240127654|ref|ZP_04740315.1| transcription elongation factor GreB [Neisseria gonorrhoeae SK-93-1035] gi|254493169|ref|ZP_05106340.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291] gi|260441075|ref|ZP_05794891.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|268594310|ref|ZP_06128477.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|268596305|ref|ZP_06130472.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|268598428|ref|ZP_06132595.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11] gi|268600782|ref|ZP_06134949.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18] gi|268603087|ref|ZP_06137254.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1] gi|268681568|ref|ZP_06148430.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332] gi|268683796|ref|ZP_06150658.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-92-679] gi|268686038|ref|ZP_06152900.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-93-1035] gi|291044409|ref|ZP_06570118.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|293399588|ref|ZP_06643741.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62] gi|59717608|gb|AAW89013.1| putative transcription elongation [Neisseria gonorrhoeae FA 1090] gi|193933271|gb|ACF29095.1| transcription elongation factor GreB [Neisseria gonorrhoeae NCCP11945] gi|226512209|gb|EEH61554.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291] gi|268547699|gb|EEZ43117.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|268550093|gb|EEZ45112.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|268582559|gb|EEZ47235.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11] gi|268584913|gb|EEZ49589.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18] gi|268587218|gb|EEZ51894.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1] gi|268621852|gb|EEZ54252.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332] gi|268624080|gb|EEZ56480.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-92-679] gi|268626322|gb|EEZ58722.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-93-1035] gi|291011303|gb|EFE03299.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|291610157|gb|EFF39279.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62] gi|317163732|gb|ADV07273.1| transcription elongation factor GreB [Neisseria gonorrhoeae TCDC-NG08107] Length = 163 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|218767812|ref|YP_002342324.1| transcription elongation factor GreB [Neisseria meningitidis Z2491] gi|34222639|sp|Q9JVD0|GREB_NEIMA RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|121051820|emb|CAM08126.1| putative transcription elongation factor [Neisseria meningitidis Z2491] gi|319410062|emb|CBY90396.1| transcription elongation factor GreB (transcript cleavage factor GreB) [Neisseria meningitidis WUE 2594] Length = 163 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|237748857|ref|ZP_04579337.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] gi|229380219|gb|EEO30310.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] Length = 184 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL +ERP++++ +S A + GD SEN +Y K + R+ L Sbjct: 30 ITPAGLKSLKDELLSLIDKERPQVVQIVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I AE D S G D+I FGATV+ E+ G++ IVG E D G +S SP Sbjct: 90 IKRIEAAEEFDPSIHYGNDQIFFGATVTY-EREDGEENTITIVGIDEFDPLEGRISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A+ LI GD ++++ P G + IL+V Sbjct: 149 MAKTLIKAREGDTVTLHTPAGIEELVILEV 178 >gi|325067374|ref|ZP_08126047.1| transcription elongation factor GreA [Actinomyces oris K20] gi|326772303|ref|ZP_08231588.1| transcription elongation factor GreA [Actinomyces viscosus C505] gi|326638436|gb|EGE39337.1| transcription elongation factor GreA [Actinomyces viscosus C505] Length = 161 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L Sbjct: 10 LTQEAYDRLAAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123 E + A++ + + D + A + K +G ++ + + G + DV G + S Sbjct: 70 EETLENAQIGE----AADDGSVSAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +P+ +AL+G GD +S AP G K EI++V Sbjct: 126 APLGQALMGHRAGDTVSYEAPNGRKIQAEIVKV 158 >gi|91775490|ref|YP_545246.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91709477|gb|ABE49405.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 165 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 23/155 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIK----AISEARAYGDLSENAEYQAAKELQNLNEGR 62 VT GF +QQ+ +QE +P ++ A+ + A D ++L+ L Sbjct: 30 VTPHGFKLLQQQASALEQERQPLTMRKDDPAVQQRLAMID----------RDLRYLQ--- 76 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A LE+ I V+D +T D + FGATV VE +G+ + IVG+ EAD+ + VS Sbjct: 77 -ARLESAI----VVDPATQPTDTVLFGATVE-VEDENGNSHTFMIVGEDEADIATNRVSW 130 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIG+++GD ++ + P G EI+ + + Sbjct: 131 VSPLAKALIGQKIGDSVTWHRPAGNLELEIIAIHY 165 >gi|213163103|ref|ZP_03348813.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 125 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93 ++ A + GD SENA+YQ K+ + R+ L + +++D S ++ FGA V Sbjct: 1 MTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVE 60 Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +E + GD ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 61 -IENDDGDTLKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYV 118 >gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [Lactobacillus casei BL23] gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23] gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W] gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II] Length = 155 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ L+ +I A+V + + D G ++L + D+ Y++VG EA + Sbjct: 59 EGRLRYLDKLIRYAKVTHPA--ASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++I+SP+ A+ GD ++V AP G ++ + Sbjct: 117 LAINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152 >gi|296115084|ref|ZP_06833726.1| putative transcription elongation factor greB [Gluconacetobacter hansenii ATCC 23769] gi|295978421|gb|EFG85157.1| putative transcription elongation factor greB [Gluconacetobacter hansenii ATCC 23769] Length = 177 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ KG + ++ EL ++ERPRI++ +S A GD SEN +Y K+ + R+ L Sbjct: 19 ISPKGMEVLRHELNTLLRDERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 78 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I +A ++D + ++ FGATV+ + + + I+G EAD G +S+ SP Sbjct: 79 TKRIEKAIIVDPAQQPRRGQVFFGATVTYATERD-ETRVVTIMGVDEADTVRGEISLISP 137 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ +GD + + P G++ E++ + + Sbjct: 138 VARALMRARVGDEVRLMTPRGDEMLEVMAISY 169 >gi|46198988|ref|YP_004655.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus thermophilus HB27] gi|109157536|pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein Of Thermus Thermophilus gi|109157537|pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein Of Thermus Thermophilus gi|18034647|gb|AAL57612.1|AF456235_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus] gi|46196612|gb|AAS81028.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus thermophilus HB27] Length = 156 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 92/157 (58%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V + Sbjct: 60 ARIDSLEDILSRAVILE--EGSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G++ + ++ + Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAI 154 >gi|256370764|ref|YP_003108589.1| putative transcription elongation factor GreA [Candidatus Sulcia muelleri SMDSEM] gi|256009556|gb|ACU52916.1| putative transcription elongation factor GreA [Candidatus Sulcia muelleri SMDSEM] Length = 157 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 65/107 (60%) Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 GDLSEN+EY+ AKE Q L E ++ L+ I +ID+S ++ +++ V + +G Sbjct: 39 GDLSENSEYKIAKENQRLLEIKIFNLKKKINNTRIIDLSKINTTKVSIFTKVKVKNIETG 98 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + Y +V + E++++ +SI +PIA+ LIGK++G+I + P + Sbjct: 99 ECIYYTLVPETESNIKKLKISIYTPIAKGLIGKKIGEIAHIKLPNNK 145 >gi|50842047|ref|YP_055274.1| transcription elongation factor GreA [Propionibacterium acnes KPA171202] gi|289425793|ref|ZP_06427547.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes SK187] gi|289426784|ref|ZP_06428512.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J165] gi|295130130|ref|YP_003580793.1| transcription elongation factor GreA [Propionibacterium acnes SK137] gi|50839649|gb|AAT82316.1| transcription elongation factor GreA [Propionibacterium acnes KPA171202] gi|289153736|gb|EFD02443.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes SK187] gi|289160110|gb|EFD08286.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J165] gi|291375127|gb|ADD98981.1| transcription elongation factor GreA [Propionibacterium acnes SK137] gi|313764010|gb|EFS35374.1| transcription elongation factor GreA [Propionibacterium acnes HL013PA1] gi|313771459|gb|EFS37425.1| transcription elongation factor GreA [Propionibacterium acnes HL074PA1] gi|313791667|gb|EFS39785.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA1] gi|313802247|gb|EFS43473.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA2] gi|313808119|gb|EFS46593.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA2] gi|313811414|gb|EFS49128.1| transcription elongation factor GreA [Propionibacterium acnes HL083PA1] gi|313812597|gb|EFS50311.1| transcription elongation factor GreA [Propionibacterium acnes HL025PA1] gi|313814863|gb|EFS52577.1| transcription elongation factor GreA [Propionibacterium acnes HL059PA1] gi|313818886|gb|EFS56600.1| transcription elongation factor GreA [Propionibacterium acnes HL046PA2] gi|313820713|gb|EFS58427.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA1] gi|313822520|gb|EFS60234.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA2] gi|313825684|gb|EFS63398.1| transcription elongation factor GreA [Propionibacterium acnes HL063PA1] gi|313828026|gb|EFS65740.1| transcription elongation factor GreA [Propionibacterium acnes HL063PA2] gi|313830831|gb|EFS68545.1| transcription elongation factor GreA [Propionibacterium acnes HL007PA1] gi|313833259|gb|EFS70973.1| transcription elongation factor GreA [Propionibacterium acnes HL056PA1] gi|313839015|gb|EFS76729.1| transcription elongation factor GreA [Propionibacterium acnes HL086PA1] gi|314915042|gb|EFS78873.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA4] gi|314918627|gb|EFS82458.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA1] gi|314920435|gb|EFS84266.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA3] gi|314925628|gb|EFS89459.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA3] gi|314932109|gb|EFS95940.1| transcription elongation factor GreA [Propionibacterium acnes HL067PA1] gi|314954625|gb|EFS99031.1| transcription elongation factor GreA [Propionibacterium acnes HL027PA1] gi|314958576|gb|EFT02678.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA1] gi|314959820|gb|EFT03922.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA2] gi|314962393|gb|EFT06494.1| transcription elongation factor GreA [Propionibacterium acnes HL082PA1] gi|314968336|gb|EFT12435.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA1] gi|314973719|gb|EFT17815.1| transcription elongation factor GreA [Propionibacterium acnes HL053PA1] gi|314976366|gb|EFT20461.1| transcription elongation factor GreA [Propionibacterium acnes HL045PA1] gi|314979203|gb|EFT23297.1| transcription elongation factor GreA [Propionibacterium acnes HL072PA2] gi|314983351|gb|EFT27443.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA1] gi|314986758|gb|EFT30850.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA2] gi|314989499|gb|EFT33590.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA3] gi|315077480|gb|EFT49540.1| transcription elongation factor GreA [Propionibacterium acnes HL053PA2] gi|315080223|gb|EFT52199.1| transcription elongation factor GreA [Propionibacterium acnes HL078PA1] gi|315084105|gb|EFT56081.1| transcription elongation factor GreA [Propionibacterium acnes HL027PA2] gi|315085307|gb|EFT57283.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA3] gi|315089078|gb|EFT61054.1| transcription elongation factor GreA [Propionibacterium acnes HL072PA1] gi|315096494|gb|EFT68470.1| transcription elongation factor GreA [Propionibacterium acnes HL038PA1] gi|315098901|gb|EFT70877.1| transcription elongation factor GreA [Propionibacterium acnes HL059PA2] gi|315100859|gb|EFT72835.1| transcription elongation factor GreA [Propionibacterium acnes HL046PA1] gi|315107203|gb|EFT79179.1| transcription elongation factor GreA [Propionibacterium acnes HL030PA1] gi|315108077|gb|EFT80053.1| transcription elongation factor GreA [Propionibacterium acnes HL030PA2] gi|327326744|gb|EGE68527.1| transcription elongation factor GreA [Propionibacterium acnes HL096PA2] gi|327330559|gb|EGE72306.1| transcription elongation factor GreA [Propionibacterium acnes HL096PA3] gi|327331070|gb|EGE72810.1| transcription elongation factor GreA [Propionibacterium acnes HL097PA1] gi|327443055|gb|EGE89709.1| transcription elongation factor GreA [Propionibacterium acnes HL043PA1] gi|327445178|gb|EGE91832.1| transcription elongation factor GreA [Propionibacterium acnes HL043PA2] gi|327446896|gb|EGE93550.1| transcription elongation factor GreA [Propionibacterium acnes HL013PA2] gi|327450159|gb|EGE96813.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA3] gi|327455114|gb|EGF01769.1| transcription elongation factor GreA [Propionibacterium acnes HL092PA1] gi|327455284|gb|EGF01939.1| transcription elongation factor GreA [Propionibacterium acnes HL083PA2] gi|328752572|gb|EGF66188.1| transcription elongation factor GreA [Propionibacterium acnes HL020PA1] gi|328752825|gb|EGF66441.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA1] gi|328759252|gb|EGF72868.1| transcription elongation factor GreA [Propionibacterium acnes HL025PA2] gi|328760261|gb|EGF73834.1| transcription elongation factor GreA [Propionibacterium acnes HL099PA1] gi|332674970|gb|AEE71786.1| transcription elongation factor GreA [Propionibacterium acnes 266] Length = 168 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTAIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G G+ AP G Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153 >gi|309378808|emb|CBX22634.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 163 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V ++ Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYV 160 >gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] Length = 155 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 5/156 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ L+ +I A+V + + D G ++L + D Y++VG EA + Sbjct: 59 EGRLRYLDKLIRYAKVTHPA--ASDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQDK 116 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++I+SP+ A+ GD ++V AP G ++ + Sbjct: 117 LAINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152 >gi|298369204|ref|ZP_06980522.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014 str. F0314] gi|298283207|gb|EFI24694.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014 str. F0314] Length = 163 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPVGWQALKDELYRLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D +++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPEQREPTEQVFFGATVCLL-RGDGSEQTVRIVGADEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNGPEGREEIEILSVEYI 160 >gi|311743142|ref|ZP_07716950.1| transcription elongation factor GreA [Aeromicrobium marinum DSM 15272] gi|311313822|gb|EFQ83731.1| transcription elongation factor GreA [Aeromicrobium marinum DSM 15272] Length = 175 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D I VT + +D+++ EL + E R I I+ AR GDL EN Y AA+E Q E Sbjct: 15 TDTIWVTQEAYDRLRSELDHLRGEVRSDITSKIAAARDEGDLKENGGYHAAREEQGKTEA 74 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----ADVQ 116 R+ +LE+++ RAEV D G + G V++ D +++ ++G +E + V Sbjct: 75 RIRQLEDMLRRAEVGDKPADDG-LVEAGMKVTIRFAGDDDTESF-LLGSRELLSLDSSVD 132 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 + S +SP+ A++GK+ GD + P G T E+++ Sbjct: 133 LDVYSPTSPLGAAILGKKAGDTATYETPNGRSITVEVVEA 172 >gi|261380528|ref|ZP_05985101.1| transcription elongation factor GreB [Neisseria subflava NJ9703] gi|284796784|gb|EFC52131.1| transcription elongation factor GreB [Neisseria subflava NJ9703] Length = 163 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPEAREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR+LI GD + +N P G + EIL V +I Sbjct: 128 LARSLIKAREGDEVVLNTPEGREVIEILSVEYI 160 >gi|325197909|gb|ADY93365.1| transcription elongation factor GreB [Neisseria meningitidis G2136] Length = 163 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGNYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|282854471|ref|ZP_06263808.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J139] gi|282583924|gb|EFB89304.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J139] gi|314922876|gb|EFS86707.1| transcription elongation factor GreA [Propionibacterium acnes HL001PA1] gi|314980833|gb|EFT24927.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA3] gi|315090280|gb|EFT62256.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA4] gi|315103027|gb|EFT75003.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA2] Length = 168 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G G+ AP G Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153 >gi|271502327|ref|YP_003335353.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] gi|270345882|gb|ACZ78647.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] Length = 160 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V + + K+ ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENEEGEVKR-FRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+ K + + V P G + + + ++ Sbjct: 125 ARALLKKAVDEEAVVTTPTGPRVWYVNKI 153 >gi|55981011|ref|YP_144308.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus HB8] gi|83754983|pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1. gi|83754984|pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1. gi|83754985|pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1. gi|83754986|pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1. gi|313754180|pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754181|pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754182|pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754204|pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|313754205|pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|313754206|pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|55772424|dbj|BAD70865.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus HB8] Length = 156 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 91/157 (57%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V + Sbjct: 60 ARIDSLEDILSRAVILEEG--SGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G + + ++ + Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGRREFRVVAI 154 >gi|288576392|ref|ZP_06394360.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996] gi|288565631|gb|EFC87191.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996] Length = 256 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 102 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 161 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 162 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 220 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 221 LARCLIKAREGDEVILNTPEGREEIEILSVEYI 253 >gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium Broad-1] gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium Broad-1] Length = 169 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 9 SKG-FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 SKG FDK+ EL + + R I+ IS AR GDL EN Y AA+E Q EG++ +LE Sbjct: 15 SKGAFDKLTAELEYLKGPRRQEILAEISSARDEGDLKENGGYHAAREEQGKLEGQIQQLE 74 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS--- 123 ++ +A+ D ++ G V+ E + D+ +++ E +G V IS Sbjct: 75 ALLRKADT--TVPEDDDVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEISSAA 132 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI ALIG +GD ++ P G EIL+ Sbjct: 133 SPIGAALIGARVGDTVTYEGPRGPLKVEILKT 164 >gi|149197307|ref|ZP_01874359.1| transcript cleavage factor/unknown domain fusion protein [Lentisphaera araneosa HTCC2155] gi|149139853|gb|EDM28254.1| transcript cleavage factor/unknown domain fusion protein [Lentisphaera araneosa HTCC2155] Length = 693 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 8/157 (5%) Query: 2 VDKIP-VTS-KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 V K+P VTS + + +Q+E E P KAI+ AR +GDL EN E++AAK+ Q Sbjct: 529 VGKLPQVTSQRSYKALQEEHERLVNTEIPDNSKAIAAAREHGDLRENFEFRAAKDRQKYL 588 Query: 60 EGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ EL+ ++ + D S +R+ A V++ K+ + Y IVG + D Sbjct: 589 QLRVGELDAMLNKIGPTDFSEFKVKNRVIPAAKVTI--KSPEAETTYSIVGMLDGDPDKN 646 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S +P+A++++G ++GD S+ PGG++ EIL V Sbjct: 647 WLSFETPLAKSMLGHQVGD--SIELPGGDEA-EILAV 680 >gi|53802404|ref|YP_112932.1| transcription elongation factor [Methylococcus capsulatus str. Bath] gi|53756165|gb|AAU90456.1| putative transcription elongation factor [Methylococcus capsulatus str. Bath] Length = 166 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 +D + SGDR+ FGATV VE +G+ + Y IVG+ EAD G +S SP+ARAL+ E Sbjct: 84 VDPAARSGDRVHFGATVE-VEDEAGNVQRYSIVGEDEADAAHGKISWVSPLARALLNAEA 142 Query: 136 GDIISVNAPGGEKTYEILQV 155 GD ++ P G+K IL + Sbjct: 143 GDTVTWKRPAGDKELHILAI 162 >gi|225164446|ref|ZP_03726704.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] gi|224800944|gb|EEG19282.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] Length = 617 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 79/149 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ + +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + + A + Sbjct: 462 VSRESYERKREEYETIVSKKIPENSKAIATAREHGDLKENSEYKMAKQDQQVLMAQKALI 521 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++RA + D D I G V L ++G Y ++G ++ + +++ +P+ Sbjct: 522 EKELSRARITDFKDAPTDSIGVGNIVGLKIGSTGKTATYTLLGAWDSIPEKNIIAYKTPL 581 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + L+ K +GD + V E+TY + + Sbjct: 582 GQGLLTKRVGDTVQVKIGSAEETYTVTSI 610 >gi|119715224|ref|YP_922189.1| transcription elongation factor GreA [Nocardioides sp. JS614] gi|119535885|gb|ABL80502.1| transcription elongation factor GreA [Nocardioides sp. JS614] Length = 167 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 29/165 (17%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +DK++ EL + R II IS AR GDL EN Y AA+E Q EGR+ +L Sbjct: 12 LTQDAYDKLRAELESLKGPVRQEIIARISSARDEGDLKENGAYHAAREEQGKVEGRIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV------ 120 E+++ RAEV + G +VE G Y+ VGD E +V++ L+ Sbjct: 72 EDVLRRAEVGETPPNDG----------VVE--PGMVVTYRFVGDAEDEVETFLLGAREIE 119 Query: 121 -------SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+ A+ GK GD +S AP G++ LQV+ + Sbjct: 120 PEGLTVYSPQSPLGSAINGKAKGDTVSYLAPNGKE----LQVVIV 160 >gi|255068272|ref|ZP_05320127.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256] gi|255047464|gb|EET42928.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256] Length = 163 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDHRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V++ + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVNPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|148654263|ref|YP_001274468.1| transcription elongation factor GreA [Roseiflexus sp. RS-1] gi|229485907|sp|A5UPG5|GREA_ROSS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148566373|gb|ABQ88518.1| transcription elongation factor GreA [Roseiflexus sp. RS-1] Length = 157 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 1/156 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ E+++I+ RA++ID + G+ V++ ++ + IVG EA G Sbjct: 61 EGRIREIKSILARAQIIDEENGDNHEVRIGSRVTVRIDGEDGEETWTIVGSTEAKPSEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI AL+GK ++V P G I+ + Sbjct: 121 ISNESPIGSALLGKRPRQKVTVETPSGTMKLTIVDI 156 >gi|284036025|ref|YP_003385955.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74] gi|283815318|gb|ADB37156.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74] Length = 171 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 14/152 (9%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G ++ E ++E A A L++ E + ++L LN G++A L Sbjct: 31 VTPRGLAMLRDEFEKLEKEH----------ALAQTQLTD--ENERTRQLALLN-GQIAAL 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGLVSISSP 125 I A+V+++ D + FGATV+L +++G + IVG EAD G ++ +P Sbjct: 78 NQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFPAP 137 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IAR L+GK++GD I++ P GE EI + + Sbjct: 138 IARLLLGKKVGDFITLRTPRGENALEITSIYY 169 >gi|313679936|ref|YP_004057675.1| grea/greb family elongation factor [Oceanithermus profundus DSM 14977] gi|313152651|gb|ADR36502.1| GreA/GreB family elongation factor [Oceanithermus profundus DSM 14977] Length = 156 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 91/159 (57%), Gaps = 9/159 (5%) Query: 1 MVDKIPVTSKGFDKIQQEL--RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ +T G++++Q EL ++ EE RI++ E+ + D ++ +A +E + Sbjct: 1 MAREVKLTKAGYERLQLELAEEKKRLEEATRILQEQMES--FEDYEDSGLEEAKREKAQI 58 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--Q 116 E R+ LE+I+ RA +I+ + GD++ G+ V + ++ +G+ QIV EA V + Sbjct: 59 -EARVDALEDILHRAVIIE--SAEGDKVTLGSVVVVQDEKTGESLTLQIVAPAEATVLEE 115 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 VS SP+ +AL+G++ GD + V+ P G++ Y IL V Sbjct: 116 PMRVSDESPLGKALLGRKEGDKVRVDTPSGKRRYRILSV 154 >gi|254804573|ref|YP_003082794.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|254668115|emb|CBA04682.1| Transcription elongation factor [Neisseria meningitidis alpha14] Length = 163 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKNELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A VID + D++ F ATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVIDPELREATDQVFFSATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|197122163|ref|YP_002134114.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] gi|196172012|gb|ACG72985.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] Length = 169 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+R+ E + + +A++ RA GD + + + L L+ R+A L+ + V+ Sbjct: 27 EVRYVTPEGQAALREALARLRADRGDAARLPDAERPARLGELD-ARIAALDATLGALTVL 85 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 ++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144 Query: 137 DIISVNAPGGEKTYEILQV 155 D++ VN PGGE ++ V Sbjct: 145 DVVEVNRPGGEAELTVVAV 163 >gi|15806181|ref|NP_294886.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6458901|gb|AAF10735.1|AE001965_9 transcription elongation factor [Deinococcus radiodurans R1] Length = 158 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 88/155 (56%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + +T +G ++++++L++ + R +I + + +A GDL E+A Y A+ Q+ NE + Sbjct: 4 EPVRMTRQGKERLEEQLQYLKTTRREQISEYMGKAIEDGDLRESAAYDEARMQQSENEAK 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE+E + RA+++ + + GA V +VE ++ +IVG E DV G +S Sbjct: 64 IAEIEAQLERAQIMKDEEIDTSAVGVGARV-IVEDAQNKQRTLEIVGSFEVDVLKGKISD 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+ +AL+GK G+ P G + +++ V + Sbjct: 123 ASPMGQALLGKRPGESAVWPGPKGNVSLKVISVEY 157 >gi|241759774|ref|ZP_04757874.1| transcription elongation factor GreB [Neisseria flavescens SK114] gi|241319782|gb|EER56178.1| transcription elongation factor GreB [Neisseria flavescens SK114] Length = 163 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D+I F ATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPEAREATDQIFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR+LI GD + ++ P G + EIL V +I Sbjct: 128 LARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160 >gi|254283435|ref|ZP_04958403.1| transcription elongation factor GreB [gamma proteobacterium NOR51-B] gi|219679638|gb|EED35987.1| transcription elongation factor GreB [gamma proteobacterium NOR51-B] Length = 168 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 1/149 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++ EL+ +EERP + A+ A GD SEN +Y K+ + R+ L Sbjct: 15 ITPEGEAALRAELQALWKEERPVVTAAVQAAAGNGDRSENGDYIYGKKRLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ + FGA V L E G++ +++VG E D+Q+G +S SP+ Sbjct: 75 RKRLEELTVVRDPPSDRGKAYFGAWVDL-ENPDGERVTWRVVGPDEFDLQAGKLSCDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GK + I++++P G++ + +L V Sbjct: 134 GRALLGKPIDSEITIDSPSGDQYWYLLDV 162 >gi|196232168|ref|ZP_03131023.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] gi|196223890|gb|EDY18405.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] Length = 169 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 1/113 (0%) Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102 L E E + +++ RM L + AEVI IS GD + FG V+ + G + Sbjct: 54 LEETGEGEISRDELRRVTSRMQALSQRLADAEVIAISESRGDEVRFGMFVT-IRDAGGVE 112 Query: 103 KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 Y+IVG E D+++G +S SP+A+A++G+++GD++ AP GEK I+ V Sbjct: 113 DEYRIVGVDEVDLEAGWISWLSPLAQAIVGRKIGDVVQFQAPAGEKKLHIVAV 165 >gi|218296574|ref|ZP_03497302.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23] gi|218243116|gb|EED09648.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23] Length = 156 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 93/160 (58%), Gaps = 11/160 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T G++++ ++L ++ER R+ K + E D +++ +AAK+ + Sbjct: 1 MAREVKLTKAGYERLMKQL----EQERERLQEATKILQELMESSDDYDDSGLEAAKQEKA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V Sbjct: 57 RIEARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLE 114 Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + IS SP+ +AL+G +GD++S++ P G+K + ++ V Sbjct: 115 TPMKISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAV 154 >gi|297572051|ref|YP_003697825.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum DSM 20595] gi|296932398|gb|ADH93206.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum DSM 20595] Length = 159 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D ++ + FD++ EL + R I I EAR+ GDL EN Y AA+E Q+ E Sbjct: 1 MADTTWLSQETFDRLSAELEHLKTTGRTDIATKIEEARSEGDLRENGGYHAAREEQSKME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSG 118 GR+ EL ++ AEV D + + + +A G ++ E N +KK ++G +EA V Sbjct: 61 GRIQELTYLLEHAEVGD-APVELNEVAPGLVIT-AEVNGKEKKF--LLGSREAAEFVDID 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148 + ++P+ A++GK++GD S AP G++ Sbjct: 117 VYPETAPLGSAIMGKKVGDETSYTAPNGKE 146 >gi|291613395|ref|YP_003523552.1| transcription elongation factor GreB [Sideroxydans lithotrophicus ES-1] gi|291583507|gb|ADE11165.1| transcription elongation factor GreB [Sideroxydans lithotrophicus ES-1] Length = 186 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ ++++E ERP +++ +S A + GD SEN +Y K+ + R+ L Sbjct: 31 ITPEGYRRLKEEYMQLLDVERPALVQTVSWAASNGDRSENGDYIYGKKRLREIDRRLRFL 90 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++VID + G +++ FGATV++ + G ++ Y IVG EA+ G +S SP Sbjct: 91 AKRLENSQVIDPAQRQGCEQVFFGATVTVCHSD-GTERTYSIVGIDEANASKGHISWVSP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+ D + + P G + +++V + Sbjct: 150 LARTLLKARADDAVILQLPEGVEELVVIEVSY 181 >gi|90109221|pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1 gi|90109222|pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1 gi|90109223|pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1 gi|18034643|gb|AAL57610.1|AF456233_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus aquaticus] Length = 157 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 93/160 (58%), Gaps = 11/160 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T G++++ ++L ++ER R+ K + E D +++ +AAK+ + Sbjct: 1 MAREVKLTKAGYERLMKQL----EQERERLQEATKILQELMESSDDYDDSGLEAAKQEKA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V Sbjct: 57 RIEARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLE 114 Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + IS SP+ +AL+G +GD++S++ P G+K + ++ + Sbjct: 115 NPMKISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAI 154 >gi|225075604|ref|ZP_03718803.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens NRL30031/H210] gi|224953026|gb|EEG34235.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens NRL30031/H210] Length = 163 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPEAREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR+LI GD + ++ P G + EIL V +I Sbjct: 128 LARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160 >gi|297620326|ref|YP_003708463.1| transcription elongation factor greA [Waddlia chondrophila WSU 86-1044] gi|297375627|gb|ADI37457.1| transcription elongation factor greA [Waddlia chondrophila WSU 86-1044] Length = 721 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G+ K Q+ ++ E K + EAR++GDL EN+EY+ A E ++ + M L Sbjct: 573 TEEGYRKTQERVKRIATVEMVENAKEVEEARSHGDLRENSEYKFACEKRSRLQSEMKMLS 632 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A V+ + G V VE+ SG K+ + I+G EAD+ +G++S S IA Sbjct: 633 KQLSAARVLTPEDVDSSIAGVGCIVE-VEEPSGAKEQFTILGPWEADIDNGIISYQSQIA 691 Query: 128 RALIGKELGD 137 +A+ G ++GD Sbjct: 692 QAMSGHKIGD 701 >gi|261377902|ref|ZP_05982475.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685] gi|269145757|gb|EEZ72175.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685] Length = 163 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|153004515|ref|YP_001378840.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] gi|152028088|gb|ABS25856.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] Length = 168 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 16/149 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G ++QEL +A+ +ARA + + E+ A L L E R A + Sbjct: 31 VTPEGQAALRQEL------------EALRDARA--EAARLPEHARAARLAEL-ERRAALV 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + V+ + ++ FG V +VE G ++IVG EAD + G+VS+ SP+ Sbjct: 76 EGTLAALTVLGPESALEGKVGFGTWV-VVEDEDGRALTWRIVGPDEADPRRGMVSVHSPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+G E GD + V P G + Y +++V Sbjct: 135 ARALLGHEAGDDVEVELPAGRRGYSVIEV 163 >gi|329948133|ref|ZP_08295005.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 170 str. F0386] gi|328522866|gb|EGF49971.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 170 str. F0386] Length = 161 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 7/143 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L Sbjct: 10 LTQEAYDRLSAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123 E + A++ + + D + A + K +G ++ + + G + DV G + S Sbjct: 70 EETLENAQIGE----AADDGSISAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ +AL+G GD ++ AP G Sbjct: 126 APLGQALMGHRAGDTVAYEAPTG 148 >gi|319942272|ref|ZP_08016587.1| transcription elongation factor GreB [Sutterella wadsworthensis 3_1_45B] gi|319804145|gb|EFW01045.1| transcription elongation factor GreB [Sutterella wadsworthensis 3_1_45B] Length = 185 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GD 84 ERP ++ ++ A + GD SEN +Y K+ + R+ L I AEV+D + D Sbjct: 41 ERPDVVNVVAWAASNGDRSENGDYLYGKKRLREIDRRIRFLNKRIESAEVVDPAVHPETD 100 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV--- 141 ++ FGATV L G+++ +IVG EAD + G VS SPIAR + + GD + + Sbjct: 101 QVFFGATV-LYCNQRGEERKIRIVGIDEADAEHGDVSWISPIARVFLRRHEGDEVKLPTP 159 Query: 142 ---NAPGGEKTYEILQVLW 157 P G T EIL+V + Sbjct: 160 ATSTHPAGVDTLEILEVTY 178 >gi|227876654|ref|ZP_03994763.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243] gi|269976185|ref|ZP_06183181.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1] gi|306817605|ref|ZP_07451348.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC 35239] gi|307699804|ref|ZP_07636855.1| putative transcription elongation factor GreA [Mobiluncus mulieris FB024-16] gi|227842551|gb|EEJ52751.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243] gi|269935514|gb|EEZ92052.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1] gi|304649647|gb|EFM46929.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC 35239] gi|307614842|gb|EFN94060.1| putative transcription elongation factor GreA [Mobiluncus mulieris FB024-16] Length = 161 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD++Q EL R R I K I AR GDL EN Y AA++ Q NE R+ EL Sbjct: 10 MTQAAFDRLQSELDERSGSIRAEITKKIDLARREGDLKENGGYHAARDEQAHNETRILEL 69 Query: 67 ENIITRAEV---IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVS 121 + I+ AEV D T+S +VE G +K ++G + AD + + S Sbjct: 70 QEILKHAEVGEATDDGTIS--------PGCVVEAKVGKRKIRFLLGSRVADEGMDIDVFS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +P+ AL+G GD + AP G+K E+L V Sbjct: 122 PDAPLGAALLGHREGDQVEYLAPTGKKIQVEVLSV 156 >gi|254492017|ref|ZP_05105195.1| transcription elongation factor GreB [Methylophaga thiooxidans DMS010] gi|224462832|gb|EEF79103.1| transcription elongation factor GreB [Methylophaga thiooxydans DMS010] Length = 147 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 10/146 (6%) Query: 14 KIQQEL--RWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAELENII 70 ++ QEL RW ++ E +++A++ A A GD SENAEY KEL+ L+ R+ L+ I Sbjct: 3 RLNQELSERWARRRE---VVQALAAAAAEGDRSENAEYIYRKKELRELDR-RIRYLQKRI 58 Query: 71 TRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 V+ D+ +G R+ F A V+L E +G++ Y+IVG E D G +S+ SP+ARA Sbjct: 59 PDLNVVHDVPDDTG-RVFFAAWVTL-ETEAGEEVTYRIVGPDEIDHAKGNISVDSPLARA 116 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 L+GK + D + G K Y IL + Sbjct: 117 LLGKMIDDDAIIRVEDGRKQYYILAI 142 >gi|91202565|emb|CAJ72204.1| hypothetical protein kustd1459 [Candidatus Kuenenia stuttgartiensis] Length = 741 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 83/153 (54%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI VT G++K ++EL + + + EA + GDL ENAEYQAA+E Q + Sbjct: 585 NKIYVTKHGYEKQKKELDNIMNIQFAENARDLGEAISRGDLRENAEYQAAREKQAQLIEK 644 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L+ + + I+ T+ + ++ G V++ K+ + Y ++G +AD+ ++S Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI + L+ K+ G+ +++ P E +I+++ Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKI 737 >gi|86158541|ref|YP_465326.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85775052|gb|ABC81889.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 168 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 3/139 (2%) Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+R+ E + + +A++ RA D + + + A L +L+ R+A L+ + V+ Sbjct: 27 EVRYVTPEGQAALREALARLRAERADAARLPDAERAPRLADLD-ARVAALDATLGALTVL 85 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 ++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144 Query: 137 DIISVNAPGGEKTYEILQV 155 D++ V+ PGGE ++ V Sbjct: 145 DVVEVHRPGGEAELTVVAV 163 >gi|223936169|ref|ZP_03628082.1| GreA/GreB family elongation factor [bacterium Ellin514] gi|223895031|gb|EEF61479.1| GreA/GreB family elongation factor [bacterium Ellin514] Length = 170 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL Q E+R + A G+ S NA+ E+Q + + + +L Sbjct: 33 LTPDGAQRLRAELNRLQAEKRSQT--------ATGEFSGNAQ----TEMQLVGQ-HILQL 79 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + AE++ +++ FGATV+ V SG++ Y+IVG E D+ VS SPI Sbjct: 80 EQSLATAEIVPPPPQPWEQVRFGATVT-VRDESGNETRYRIVGVDETDIDRDWVSWLSPI 138 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALI +G+ + P GEK EI+ + + Sbjct: 139 ARALINARIGERVHFRFPAGEKQLEIVSITY 169 >gi|115378949|ref|ZP_01466082.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|310818253|ref|YP_003950611.1| transcription elongation factor, GreA/GreB family [Stigmatella aurantiaca DW4/3-1] gi|115364025|gb|EAU63127.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|309391325|gb|ADO68784.1| Transcription elongation factor, GreA/GreB family [Stigmatella aurantiaca DW4/3-1] Length = 169 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 20/158 (12%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS--ENAEYQAAKELQNLNE 60 DK +T +G+ +Q+EL AR G + E E A + + E Sbjct: 26 DKRYITPEGYRALQEEL-----------------ARLLGPEAGEEGQEAWGAADRKRERE 68 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R L + V+ R+ FGA V+L E G + Y+IVG EADV++G + Sbjct: 69 RRAHFLSETLEEVRVVAPEPSQEGRVFFGAWVTL-EDEEGAEVTYRIVGPDEADVKAGRL 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+ARAL+GKE+G+ + V P G Y + +V + Sbjct: 128 SVESPLARALLGKEVGEAVPVERPRGAVEYTLTRVAYT 165 >gi|261392938|emb|CAX50523.1| transcription elongation factor GreB (transcript cleavage factor GreB) [Neisseria meningitidis 8013] Length = 163 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L Sbjct: 9 ITPARWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AR LI GD + +N P G + EIL V +I Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|313837032|gb|EFS74746.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA2] gi|314929380|gb|EFS93211.1| transcription elongation factor GreA [Propionibacterium acnes HL044PA1] gi|314971536|gb|EFT15634.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA3] gi|328907910|gb|EGG27672.1| transcription elongation factor GreA [Propionibacterium sp. P08] Length = 168 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + + R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGKGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDIFLLGSRQVMGLDDSVDI 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G G+ AP G Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYKAPNG 153 >gi|320450007|ref|YP_004202103.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus scotoductus SA-01] gi|320150176|gb|ADW21554.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus scotoductus SA-01] Length = 156 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 93/160 (58%), Gaps = 11/160 (6%) Query: 1 MVDKIPVTSKGFDKIQQEL---RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T G++++ Q+L R R QE RI++ + E+ D +++ +AAK+ + Sbjct: 1 MAREVKLTKAGYERLMQQLLQERERLQEA-TRILQELMES---SDDYDDSGLEAAKQEKA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ LE+I++RA +I+ +T + I G+ V L + +G++ Q+V EA V Sbjct: 57 RIEARIDSLEDILSRAVIIEGATT--EVIGLGSVVELEDPVTGERLEVQVVSPAEASVLE 114 Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + IS SP+ +AL+G GD++S++ P G+K + ++ V Sbjct: 115 TPMKISDASPMGKALLGHREGDVLSLDTPKGKKEFRVVSV 154 >gi|328948722|ref|YP_004366059.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Treponema succinifaciens DSM 2489] gi|328449046|gb|AEB14762.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Treponema succinifaciens DSM 2489] Length = 914 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 65/110 (59%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P++ I EA+ GDL ENAEY AAKE Q+ ++++L+ ++RA V D +T + ++ Sbjct: 782 PKVAAEIGEAKEKGDLKENAEYIAAKEAQHRLNVQLSKLKEELSRAVVFDPTTATTSLVS 841 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 FG V+L ++ Y I+G E++V G++S SP+ L+ + G+ Sbjct: 842 FGTKVTLHNNLENNEVVYTILGPWESNVDEGIISYLSPLGNNLLDMKNGE 891 >gi|223557977|gb|ACM90983.1| transcription elongation factor GreA [uncultured bacterium URE4] Length = 112 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 58/100 (58%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 Q L E ++A L+ + A VID S +S D + + V++ N+ K +QIVG+ EAD Sbjct: 11 QGLLEVKIARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEADF 70 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 GL+S S+PI +AL+G G+++ P G ++IL + Sbjct: 71 SKGLLSASTPIGKALMGHGKGEVVEAKVPSGIMKFKILDI 110 >gi|159898200|ref|YP_001544447.1| transcription elongation factor GreA [Herpetosiphon aurantiacus ATCC 23779] gi|159891239|gb|ABX04319.1| transcription elongation factor GreA [Herpetosiphon aurantiacus ATCC 23779] Length = 155 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G K++ E+ + R + + I +A+ GD+SE+ EY+ AK Q Sbjct: 1 MTDKPFYLTKEGRAKLEAEIEELETTGRMEVAERIRQAKELGDISESGEYEDAKNKQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 EGR+ E+ NI+ A++I+ GD + G++V+ + G+++ + IVG EA + Sbjct: 61 EGRIREIRNILNNAQMIE---EDGDNREVRLGSSVT-IRYEDGEEEEWMIVGAAEASPRD 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G +S SPI AL+GK + + P G +L++ Sbjct: 117 GKISNESPIGSALMGKRARQKATASTPSGIMKMTVLKI 154 >gi|239917044|ref|YP_002956602.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] gi|281414493|ref|ZP_06246235.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] gi|239838251|gb|ACS30048.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] Length = 164 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AEL Sbjct: 11 LTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAEL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQS-GLVSIS 123 ++++ A V + + G + G V+ V +GD+ + + G++E AD +S + S Sbjct: 71 KHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTF-LFGNREIAADDESLEVYSER 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ A+ G + GD +S AP G Sbjct: 127 SPLGEAINGAKQGDKVSYTAPNG 149 >gi|289705947|ref|ZP_06502321.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Micrococcus luteus SK58] gi|289557284|gb|EFD50601.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Micrococcus luteus SK58] Length = 164 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AEL Sbjct: 11 LTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAEL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQS-GLVSIS 123 ++++ A V + + G + G V+ V +GD+ + + G++E AD +S + S Sbjct: 71 KHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTF-LFGNREIAADDESLEVYSER 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ A+ G + GD +S AP G Sbjct: 127 SPLGEAINGAKKGDKVSYTAPNG 149 >gi|257138318|ref|ZP_05586580.1| transcription elongation factor GreB [Burkholderia thailandensis E264] Length = 166 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149 Query: 126 IARALIGKELGDIIS 140 IA AL+ +GD ++ Sbjct: 150 IASALLKARVGDTVT 164 >gi|46445720|ref|YP_007085.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399361|emb|CAF22810.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 723 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 5/153 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I T +G+ KIQ +R E + I ARA GDL EN+E++ A+E + + Sbjct: 570 EEIWTTEEGYLKIQDRIRQIGTVEVVENAREIEAARALGDLRENSEFKFAQERRARLQSE 629 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L RA +I + D + G+ + L++ + G K Y I+G +AD + ++S+ Sbjct: 630 LKTLSEQFGRARIITPDDILTDEVGIGSVIDLID-SQGQKIRYSILGPWDADPEKNILSL 688 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S A+A+IGK++GD ++T+++L + Sbjct: 689 NSKFAQAMIGKKIGDQFQFK----DETFKVLSL 717 >gi|210610359|ref|ZP_03288364.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787] gi|210152509|gb|EEA83515.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787] Length = 103 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 59/96 (61%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G Sbjct: 4 EARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGK 63 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +ALIGK++GD + V A G YE+L++ Sbjct: 64 ISNESPLGKALIGKKVGDKVEVEAQAGIIEYEVLKI 99 >gi|284033490|ref|YP_003383421.1| transcription elongation factor GreA [Kribbella flavida DSM 17836] gi|283812783|gb|ADB34622.1| transcription elongation factor GreA [Kribbella flavida DSM 17836] Length = 169 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+D+++ EL + R I + ISEAR GDL EN Y AAK+ Q E R+ +L Sbjct: 12 LTQDGYDQLKSELEHLKGPARAEITQRISEARDEGDLKENGGYHAAKDEQGKIEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----ADVQSGLVS 121 E+++ RA V + G + G VS+ D + + ++G +E V + S Sbjct: 72 EDMLRRARVGETPKDDG-VVEPGMKVSITFAGDDDVETF-LLGSRELLALDTSVDIDVYS 129 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153 SP+ A++GK+ GD + AP G+ T EI+ Sbjct: 130 PQSPLGAAIMGKKKGDKATYEAPNGKDVTVEIV 162 >gi|89901919|ref|YP_524390.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] gi|89346656|gb|ABD70859.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] Length = 187 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+ +++ EL +RP++++A+ A + GD SEN +Y K+ + R+ L Sbjct: 32 ITPQGYARLRGELLDLIDNQRPQVVEAVYWAASNGDRSENGDYIYGKKRLREIDRRIRFL 91 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V D + G ++I FGA V+ VE +G ++ I+G EAD G VS SP Sbjct: 92 TQRLEIAQVTDPALHHGSEQIFFGAHVTYVEA-AGTARSVTILGIDEADSALGQVSWVSP 150 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IAR L+ +GD + + P G E++ V Sbjct: 151 IARTLLQARVGDELQLLTPVGRVEIEVIGV 180 >gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum SK46] gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum SK46] Length = 170 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 9/147 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK++ EL E RP I I+E R GDL ENA Y AA+E Q E R+ L Sbjct: 11 LTQESYDKLKSELE-ALYENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRYL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 E+++ RA V +I SG +A TV V + GD+ + + ++G + AD + S Sbjct: 70 EDLLQRATVGEIPQESG--VALVGTVVHVYYD-GDEDDTETFLIGTRGADSSNPNLETYS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148 SP+ +AL+G + G+ + +P G++ Sbjct: 127 TDSPLGKALVGAKEGETRTYTSPSGDE 153 >gi|150377254|ref|YP_001313849.1| transcription elongation factor regulatory protein [Sinorhizobium medicae WSM419] gi|150031801|gb|ABR63916.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419] Length = 160 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 71/115 (61%), Gaps = 13/115 (11%) Query: 49 YQAAKELQNLNEGR---MAELENIITRAEVIDISTM-----SGDRIAFGATVSLVEKNSG 100 Y A ++++NE R L ++ AE + + + S D +AFG+TV+ ++ G Sbjct: 50 YDATSTIEDVNERRRQAANPLRDMRYFAERVRTAQLVPGPVSFDAVAFGSTVTF-SRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++Y+IVG+ EAD +SG +S +SP+ARAL+GK +GD++SV G++ E+L + Sbjct: 109 RVQSYRIVGEDEADPRSGSISYASPVARALMGKAVGDVVSV----GDQELEVLAI 159 >gi|297538325|ref|YP_003674094.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297257672|gb|ADI29517.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 165 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN+I +ID +T D + FGATV+ VE G+ + IVG+ EAD+ VS SP Sbjct: 79 LENVI----LIDPTTQPKDTVLFGATVN-VEDEEGNPHQFTIVGEDEADIALNKVSWVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+ALIG ++G+ +S P G EIL + Sbjct: 134 IAKALIGHKVGETVSWQRPAGNLNLEILAI 163 >gi|220916942|ref|YP_002492246.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] gi|219954796|gb|ACL65180.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 168 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 3/139 (2%) Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+R+ E + + +A++ RA D + + + A L +L+ R+A L+ + V+ Sbjct: 27 EVRYVTPEGQAALREALARLRAERADAARLPDAERAPRLADLD-ARIAALDATLGALTVL 85 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 ++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144 Query: 137 DIISVNAPGGEKTYEILQV 155 +++ V+ PGGE ++ V Sbjct: 145 EVVEVHRPGGEAELTVVAV 163 >gi|254518202|ref|ZP_05130258.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA] gi|226911951|gb|EEH97152.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA] Length = 154 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R +R I K + A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENIKKLREELEYRMTVKRAEIAKEKAIAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 N+I+ A +ID + + A + +E + D V D +D ++ +SI S Sbjct: 65 LNMISTATIIDDEEIDKSTLGINSKAKIKFIEDDFEDVVTLVTVMD--SDPENMCISIES 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + AL GK++GDI+ V+AP + + EIL++L Sbjct: 123 DLGLALKGKKVGDIVEVDAPEDKYSVEILEIL 154 >gi|322435432|ref|YP_004217644.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9] gi|321163159|gb|ADW68864.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9] Length = 200 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++ E + ++RP +++ ++ A + GD SENA+YQ +K +GR+ L Sbjct: 24 ITPGGIERLKAERHFLLTKDRPAVVQVVAWAASNGDRSENADYQYSKRRLRQIDGRVRFL 83 Query: 67 ENIITRAEVIDI-STMSGDRIA---FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 I AEVID + +G R FGATV +G + IVG E ++ +S Sbjct: 84 TKRIEAAEVIDPEAPRTGQRATRAFFGATVRYANA-AGIVRVVSIVGTDEVNLDRNHISW 142 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+ RAL+ D + ++APGG +T +L+V + Sbjct: 143 ASPLGRALMKAGEDDEVVLHAPGGTETLTVLEVRY 177 >gi|218290642|ref|ZP_03494733.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius LAA1] gi|218239307|gb|EED06505.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius LAA1] Length = 133 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+ Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120 Query: 120 VSISSPIARALIG 132 +S SP+ +AL+G Sbjct: 121 ISNESPVGKALLG 133 >gi|119505414|ref|ZP_01627487.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2080] gi|119458692|gb|EAW39794.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2080] Length = 169 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G ++++EL+ + ERP + A+ A A GD SEN +Y K+ + R+ L Sbjct: 15 ITQEGEQRLREELKELWKVERPVVTAAVQAAAANGDRSENGDYIYGKKRLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ ++ FGA V+L E G ++IVG E D+ + +S SP+ Sbjct: 75 RKRLDELIVVTAGPTDPEKAYFGAYVTL-ENTEGQVHQWRIVGPDEFDISAQKLSCDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+GK + + + +P G KT+ +++V + Sbjct: 134 GRALLGKPIDAEVVIESPSGPKTWHLIEVRY 164 >gi|13357864|ref|NP_078138.1| transcription elongation factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762258|ref|YP_001752386.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920165|ref|ZP_02691337.2| transcription elongation factor GreA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508821|ref|ZP_02958274.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701835|ref|ZP_02971503.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11132421|sp|Q9PQI7|GREA_UREPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042253|sp|B1AIU2|GREA_UREP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|11279752|pir||G82906 transcription elongation factor UU304 [imported] - Ureaplasma urealyticum gi|6899280|gb|AAF30713.1|AE002128_1 transcription elongation factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827835|gb|ACA33097.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902538|gb|EDT48827.1| transcription elongation factor GreA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675786|gb|EDT87691.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701123|gb|EDU19405.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 156 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 72/129 (55%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++ Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRSTDEVS 86 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+T+ + ++ +VG ++D + +SI +P+ +AL+ ++ G ++V+ Sbjct: 87 IGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVHTLASP 146 Query: 148 KTYEILQVL 156 +I++++ Sbjct: 147 YKVKIIKII 155 >gi|171920968|ref|ZP_02932102.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179173|ref|ZP_02555812.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024325|ref|ZP_02570283.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518634|ref|ZP_02557002.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524482|ref|ZP_02558390.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867660|ref|ZP_03079662.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273725|ref|ZP_03206260.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551554|ref|ZP_03772500.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902992|gb|EDT49281.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208908|gb|EDU05951.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019005|gb|EDU57045.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997849|gb|EDU66946.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659661|gb|EDX53041.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660717|gb|EDX53972.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249753|gb|EDY74534.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379369|gb|EEH01734.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 156 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 72/129 (55%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++ Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 87 IGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLASP 146 Query: 148 KTYEILQVL 156 +I++++ Sbjct: 147 YKVKIIKII 155 >gi|121603719|ref|YP_981048.1| transcription elongation factor GreB [Polaromonas naphthalenivorans CJ2] gi|120592688|gb|ABM36127.1| transcription elongation factor GreB [Polaromonas naphthalenivorans CJ2] Length = 183 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+++++ EL ERP+++ + A + GD SEN +Y K+ + R+ L Sbjct: 30 ITPQGYNRLRVELLDLIDSERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AE+ + G D++ FGATV+ + + G ++ I+G EA G +S SP Sbjct: 90 TKRLEIAEISNPCVHHGNDQVFFGATVTYGD-DEGLERTVTILGVDEAISAMGQISWISP 148 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A AL+ +GD +++ P G + E+L+V Sbjct: 149 VASALLKARVGDEVTLVTPQGTQLLEVLKV 178 >gi|229918722|ref|YP_002887368.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b] gi|229470151|gb|ACQ71923.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b] Length = 152 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96 AR + D E+ Y A E + EL +++ A +++ ++ + + FG V + E Sbjct: 34 ARKFCDFREDVTYTEAVRQYERIEADILELNHLLDDATIVE--SVQSEVVTFGNRVVIRE 91 Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + + Y+IV + EAD++ G +S++SP+ R L+G +G I V PGG E+L + Sbjct: 92 VQQEETERYRIVSEAEADLERGSISVTSPLGRRLMGATMGQTIQVETPGGTIQVEVLHI 150 >gi|225550671|ref|ZP_03771620.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379825|gb|EEH02187.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 156 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 72/129 (55%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++ Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 87 IGSTIEIYNYQKDRKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLASP 146 Query: 148 KTYEILQVL 156 +I++++ Sbjct: 147 YKVKIIKII 155 >gi|171463505|ref|YP_001797618.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193043|gb|ACB44004.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 168 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T G+++I+ EL +R ++K + A + GD SEN +Y K+ + Sbjct: 1 MEEKNYITLAGYERIKTELLQLLNLDRLEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMS-----GDRIAFGATVS---LVEKNSGDKKNYQIVGDQE 112 R+ L + A V+D S D++ FGA+V+ L +G + + IVG E Sbjct: 61 RRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDE 120 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 D+ VS SPIA+ALI +GD + + P G EIL V ++ Sbjct: 121 VDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTGPTEIEILDVQYL 166 >gi|227494766|ref|ZP_03925082.1| transcription elongation factor GreA [Actinomyces coleocanis DSM 15436] gi|226831766|gb|EEH64149.1| transcription elongation factor GreA [Actinomyces coleocanis DSM 15436] Length = 159 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 6/148 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + + +T + +D++++EL R +R I I AR GDL EN Y AA++ Q +NE Sbjct: 1 MSESLWLTQEAYDRLKEELEHRSTIKRQEIATKIDNARQEGDLKENGGYHAARDEQAMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119 R+ +L NI+ A V +T + D I V E G + + ++G + A + L Sbjct: 61 TRINQLTNILRDAVV--GATPADDGIVEAGMVVTAEI-MGSQSTF-LLGSRMAGSEDDLE 116 Query: 120 -VSISSPIARALIGKELGDIISVNAPGG 146 SI +PI +AL G ++G+ +S AP G Sbjct: 117 VYSIDAPIGQALNGHKVGETVSYFAPNG 144 >gi|309810926|ref|ZP_07704726.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185] gi|308435080|gb|EFP58912.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185] Length = 163 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 13/151 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL + E R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQDAYDRLSAELEHLKGEGRSDIAKRIEAAREEGDLKENGGYHAAKEEQGKMEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 E+++ A V + +G I V VE GD + + +I GD + DV S Sbjct: 71 ESLLRDAVVGEAPKDNG--IVDSGMVVTVEM-FGDTETFLLGSREIAGDADIDV----YS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ A++GK++G+ S +AP G KT E+ Sbjct: 124 EQSPLGEAIMGKKVGEETSYDAPNG-KTIEV 153 >gi|320094368|ref|ZP_08026155.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 178 str. F0338] gi|319978701|gb|EFW10257.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 178 str. F0338] Length = 159 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +RP I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRPEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 + S +P+ A+IG + GD I AP G Sbjct: 117 VFSTQAPLGAAVIGHKAGDTIEFEAPTG 144 >gi|209554023|ref|YP_002284702.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238058241|sp|B5ZBB2|GREA_UREU1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|209541524|gb|ACI59753.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 156 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 72/129 (55%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++ Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 87 IGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLALP 146 Query: 148 KTYEILQVL 156 +I++++ Sbjct: 147 YKVKIIKII 155 >gi|187735038|ref|YP_001877150.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC BAA-835] gi|187425090|gb|ACD04369.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC BAA-835] Length = 615 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96 +RA GDL EN YQ AKE++ + R AELE+ + A D + R A G V+L Sbjct: 491 SRAEGDLRENGGYQDAKEVEKVLNRRRAELEHALALARGTDFAVTDTSRAAMGTKVTLQP 550 Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE--KTYEILQ 154 N G+ Y I+G + + + +VS S + + L GK +GD + + G+ K Y I + Sbjct: 551 LNGGEPVVYTILGAWDTNPEKHIVSYLSQVGKELTGKSVGDQVKIVPMDGDKKKVYTITK 610 Query: 155 V 155 + Sbjct: 611 I 611 >gi|330836574|ref|YP_004411215.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Spirochaeta coccoides DSM 17374] gi|329748477|gb|AEC01833.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Spirochaeta coccoides DSM 17374] Length = 897 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 69/148 (46%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T D + EL + P + K I EAR GDL EN+EY+ KE Q L ++ +L Sbjct: 745 TQASLDAKRAELDKIMNIDIPEVAKEIGEARELGDLRENSEYKYGKEKQTLLNAQIKKLL 804 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+VI + + FG +SL + Y ++G E++ ++S +P+ Sbjct: 805 EEIDRAQVIQPGAVDTSKTGFGTRISLHDNIEDKDVVYTLMGPWESEPSKNILSFQAPLG 864 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 L+ K +G S + + +L++ Sbjct: 865 TQLMNKTVGQNFSFEINDKKYDFTVLKI 892 >gi|313674502|ref|YP_004052498.1| transcription elongation factor greb [Marivirga tractuosa DSM 4126] gi|312941200|gb|ADR20390.1| transcription elongation factor GreB [Marivirga tractuosa DSM 4126] Length = 145 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 67/127 (52%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++GF K+++E + RP + +S A + GD SENA+Y K+ +GR+ L Sbjct: 19 ITAEGFQKLREEHDHLWKVVRPDVTAKVSWAASLGDRSENADYHYNKKRLREIDGRIRYL 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +VI ++ FGA V + + G KK +IVG +E +S+ SP+ Sbjct: 79 RKCIDNFKVIHYHPHQEGKVMFGAWVEVENIDRGLKKRLRIVGYEELIGNKDYISMDSPL 138 Query: 127 ARALIGK 133 A+AL+ K Sbjct: 139 AQALLNK 145 >gi|15895237|ref|NP_348586.1| transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|15024946|gb|AAK79926.1|AE007701_3 Transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|325509383|gb|ADZ21019.1| Transcription elongation factor GreA [Clostridium acetobutylicum EA 2018] Length = 158 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 5/141 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +DK+++E +R +R I K EA A+GD SENAEY+AAKE N R+ ++ Sbjct: 5 LTKSDYDKLKEEYEYRNTVKRHEIAKKKMEAAAFGDRSENAEYKAAKEEYYHNNRRLGQI 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS---GLVSIS 123 ++ A +++ + D + G+ + L++ + + ++V V+ +S+ Sbjct: 65 SRLLKNAIIVEEDKID-DEVNIGSEM-LLKIGADETFKAKLVTTLNISVEDEDIEYISVD 122 Query: 124 SPIARALIGKELGDIISVNAP 144 SP +AL K +GD I VN P Sbjct: 123 SPFGKALYKKHVGDSIDVNLP 143 >gi|289810362|ref|ZP_06540991.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 65 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 45/62 (72%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63 Query: 65 EL 66 ++ Sbjct: 64 DI 65 >gi|284449158|dbj|BAI67350.1| transcription elongation factor [Lactobacillus fermentum] Length = 303 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 9/149 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 +T G+ I++++ +Q+ RP +I + AR GDLSEN EY AK EL++L E + Sbjct: 20 MTPAGYRAIEEQIEALKQK-RPTLIARLKAARVLGDLSENTEYSTAKRELRHL-ESCLRY 77 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADVQSGLVSI 122 L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A + +++ Sbjct: 78 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRYQAEQASLTEEVLAF 135 Query: 123 SSPIARALIGKELGDIIS-VNAPGGEKTY 150 SP+ AL GK + + V G K Y Sbjct: 136 DSPLGLALKGKYFFHLHNEVTKDFGNKKY 164 >gi|182412163|ref|YP_001817229.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177839377|gb|ACB73629.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 166 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 6/102 (5%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGD 110 +EL+ L+E R EL+ I+ AE+I S+ + DR + FGA V++ E++ G Y+IVG Sbjct: 65 RELRKLDE-RARELQQILATAEII--SSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGI 120 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 E + +G +S SP+A+AL+G +GD I +P G + EI Sbjct: 121 DETEFYTGGISFQSPLAQALLGASVGDRIQFQSPAGPRQLEI 162 >gi|27382335|ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium japonicum USDA 110] gi|27355506|dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 15/116 (12%) Query: 49 YQAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99 Y+AA+ + ++NE R L + A+VI + S D +AFG+TV+ + Sbjct: 50 YEAAQAIDDVNEKRRQSAVPLRDARYLTERLRTAQVIP-TPASTDTVAFGSTVTF-SRPD 107 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G + Y+IVG+ EAD ++G +S SP+AR+LIGK +GD++ G + EIL + Sbjct: 108 GRVQTYRIVGEDEADPKAGSISFVSPVARSLIGKAVGDVVG----AGTQEIEILSI 159 >gi|184201417|ref|YP_001855624.1| transcription elongation factor GreA [Kocuria rhizophila DC2201] gi|183581647|dbj|BAG30118.1| transcription elongation factor GreA [Kocuria rhizophila DC2201] Length = 165 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 11/156 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++++EL + R I+ I +AR+ GDL EN Y AA+E Q NEGR+ +L Sbjct: 9 LTQEAYDRLKKELDYIAGPYRQEIVDRIEQARSEGDLKENGGYHAAREEQGKNEGRIVQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG----LV 120 ++ A+V + G A + + + +GD+ + ++G +E D+ G + Sbjct: 69 TQLLENAQVGEAPADDG---VIEAGMVVTAEIAGDEMTF-LMGSREVAEDLTGGEDLEVF 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 S SP+ A+ G ++G+ +S AP G+ T +IL+ Sbjct: 125 SERSPMGAAINGHKVGETVSYQAPNGKDITVKILKA 160 >gi|72160851|ref|YP_288508.1| transcription elongation factor GreA [Thermobifida fusca YX] gi|71914583|gb|AAZ54485.1| prokaryotic transcription elongation factor GreA [Thermobifida fusca YX] Length = 167 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + R I I AR GDL EN Y AAKE Q E R+A L Sbjct: 12 LTQEAYDRLTAELEYLSGPGRIEIADRIEAAREEGDLRENGGYHAAKEEQGKIEARIAHL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++I++ A V G + G TV++ + ++ + + +E+ + S SP+ Sbjct: 72 QSILSNARVGQAPQREG-VVGPGMTVTIKFEGDEEEMTFLLASREESGAPIDVYSPKSPL 130 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 A+ GK++G+ ++ P G E T EIL + Sbjct: 131 GEAINGKKVGEKVTYKLPSGKEATVEILDAV 161 >gi|308176537|ref|YP_003915943.1| transcription elongation factor GreA [Arthrobacter arilaitensis Re117] gi|307744000|emb|CBT74972.1| transcription elongation factor GreA [Arthrobacter arilaitensis Re117] Length = 165 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++Q EL + R I+ I +AR+ GDL EN Y AA+E Q E R+ L Sbjct: 12 LTQEAYDRLQDELTFLSGPGRAEIVARIEQARSEGDLKENGGYHAAREEQGKAEARILYL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++++ RA+V D G + +V +GD+ + ++ GD + +V S Sbjct: 72 KDLLRRADVGDAPADDG---IVEPGMLVVANIAGDETTFLFGSREVAGDTDLEV----YS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SPI A+ G ++GD +S AP G Sbjct: 125 EQSPIGVAVHGAKVGDKLSYLAPNG 149 >gi|269302530|gb|ACZ32630.1| transcription elongation factor GreA [Chlamydophila pneumoniae LPCoLN] Length = 722 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA ++ + D++ G V+L + ++G+ Y I+G +AD S ++S+ S +A Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTL-KGDAGEVVEYTILGPWDADPDSCILSLQSKLA 689 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + ++GK+L D++ + G E +Q +W Sbjct: 690 QNMLGKKLNDVVILQ--GKEYKISRIQSIW 717 >gi|294786772|ref|ZP_06752026.1| transcription elongation factor GreA [Parascardovia denticolens F0305] gi|315226395|ref|ZP_07868183.1| transcription elongation factor GreA [Parascardovia denticolens DSM 10105] gi|294485605|gb|EFG33239.1| transcription elongation factor GreA [Parascardovia denticolens F0305] gi|315120527|gb|EFT83659.1| transcription elongation factor GreA [Parascardovia denticolens DSM 10105] Length = 158 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 7/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +DK+++EL +R+ + R I I+ ARA GDLSEN YQAA+E Q NEGR+ EL Sbjct: 9 LTQEAYDKLKEELTYREGDLREEIKAKIAAARAEGDLSENGGYQAAREEQGKNEGRIQEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124 + ++++ ++ G+ V L + +G++ Y ++G + V + ++S S Sbjct: 69 TVKLRDSQILKAPKAG--KVGPGSLVVL--EIAGNEMTY-VLGSHDLAVATDFDIISPES 123 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI A+ GK+ GD ++ AP G Sbjct: 124 PIGAAINGKKKGDTVTYAAPNG 145 >gi|15618651|ref|NP_224937.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae CWL029] gi|15836273|ref|NP_300797.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae J138] gi|16752300|ref|NP_444557.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae AR39] gi|33242100|ref|NP_877041.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae TW-183] gi|7531133|sp|Q9Z7G4|GREA_CHLPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|4377048|gb|AAD18880.1| Transcription Elongation Factor [Chlamydophila pneumoniae CWL029] gi|7188943|gb|AAF37901.1| transcription elongation protein, GreA/GreB family [Chlamydophila pneumoniae AR39] gi|8979113|dbj|BAA98948.1| transcription elongation factor [Chlamydophila pneumoniae J138] gi|33236610|gb|AAP98698.1| GreA [Chlamydophila pneumoniae TW-183] Length = 722 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA ++ + D++ G V+L + ++G+ Y I+G +AD S ++S+ S +A Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTL-KGDAGEVVEYTILGPWDADPDSCILSLQSKLA 689 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 + ++GK+L D++ + G E +Q +W Sbjct: 690 QNMLGKKLNDVVILQ--GKEYKISRIQSIW 717 >gi|108761121|ref|YP_634997.1| GreA/GreB family transcription elongation factor [Myxococcus xanthus DK 1622] gi|108465001|gb|ABF90186.1| transcription elongation factor, GreA/GreB family [Myxococcus xanthus DK 1622] Length = 167 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL ++ V++ R+ FGA V L E G Y+IVG E+DV++G +S+ S Sbjct: 73 ELAAVLEDVRVVEPDASQAGRVFFGAWVEL-EDEDGGPVRYRIVGPDESDVKAGRLSVES 131 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+GKE+G+ + V+ P G Y + V + Sbjct: 132 PLARALLGKEVGESVVVDRPRGPVEYTVTAVDY 164 >gi|313201038|ref|YP_004039696.1| grea/greb family elongation factor [Methylovorus sp. MP688] gi|312440354|gb|ADQ84460.1| GreA/GreB family elongation factor [Methylovorus sp. MP688] Length = 167 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 15/151 (9%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +QQ++ +A+ + RA LS + A++ ++ + L Sbjct: 30 VTPHGLQLLQQDM------------QALEKERAT--LSARKDDPTAQQRLSMINRDLRYL 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A ++D + S +++ FGA V VE + G ++ +QIVG+ EAD+ VS SP+ Sbjct: 76 EARLEAAIIVDPTQQSREQVLFGAHVH-VEDDEGQRQVFQIVGEDEADIAQNKVSWISPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIG + G++++ P G EI+ + + Sbjct: 135 ARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165 >gi|302338551|ref|YP_003803757.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM 11293] gi|301635736|gb|ADK81163.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM 11293] Length = 894 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT K F+ +Q+L+ E K I A GDL ENAEY+A KE Q L +M +L Sbjct: 740 VTRKTFEAKKQQLQHINDVEMKETSKEIGAAIELGDLKENAEYKAGKEKQELLNIQMQKL 799 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I RA + D + +I+F V+L ++ K+ Y G E++ ++S SP Sbjct: 800 KDEIDRAVIFDPADRDTSKISFATKVTLENLDTKKKETYSFFGPWESNPNENIISYLSPF 859 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 L + G+ + Y +L++ Sbjct: 860 GGKLWNHKEGEDLEFEINERVYHYSVLKI 888 >gi|116669728|ref|YP_830661.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24] gi|116609837|gb|ABK02561.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24] Length = 164 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 13/153 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +L Sbjct: 12 LTQEAFDRLKAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++ A V + + + D I + +V + +GD++ + +I GD + DV S Sbjct: 72 TVLLRDAHVGE--SPADDGIVEPGMI-VVARIAGDEETFLLGSREIAGDSDLDV----FS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153 SP+ A++G + GD +S AP G+ T EIL Sbjct: 125 EKSPLGSAIVGHKEGDKLSYTAPNGKDITVEIL 157 >gi|152965067|ref|YP_001360851.1| transcription elongation factor GreA [Kineococcus radiotolerans SRS30216] gi|151359584|gb|ABS02587.1| transcription elongation factor GreA [Kineococcus radiotolerans SRS30216] Length = 165 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ E E R + K I +AR GDL ENA Y AAKE Q E R+ +L Sbjct: 12 LTQDAYDRLKAEYDRLSGEGRSELAKRIEQAREEGDLKENAGYHAAKEEQGKQELRIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 +++ A+V + + GA V++ + +G++ + ++G +E +GL S S Sbjct: 72 RHLLETAQVGEAPKSVAGEVTLGAVVTV--ELAGEEMRF-LLGSREMGDGAGLDVYSEKS 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ A++G++ G+ ++ AP G Sbjct: 129 PLGAAVLGRQPGEDVTYTAPSG 150 >gi|253998935|ref|YP_003050998.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|253985614|gb|ACT50471.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] Length = 167 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 15/151 (9%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +QQ++ +A+ + RA LS + A++ ++ + L Sbjct: 30 VTPHGLYLLQQDM------------QALEKERAT--LSARKDDPTAQQRLSMINRDLRYL 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A ++D + S +++ FGA V VE + G ++ +QIVG+ EAD+ VS SP+ Sbjct: 76 EARLETAIIVDPTQQSREQVLFGAHVH-VEDDEGQRQVFQIVGEDEADIAQNKVSWISPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIG + G++++ P G EI+ + + Sbjct: 135 ARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165 >gi|269125318|ref|YP_003298688.1| transcription elongation factor GreA [Thermomonospora curvata DSM 43183] gi|268310276|gb|ACY96650.1| transcription elongation factor GreA [Thermomonospora curvata DSM 43183] Length = 166 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 2/148 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + R I + I AR GDL EN Y AAKE Q EGR+ +L Sbjct: 12 LTQEAYDRLKAELEYLSGPGRIEIAQKIEAAREEGDLRENGGYHAAKEEQGKIEGRILQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++I+ + V + G + G TV++ ++ ++ + + +E+ + S SP+ Sbjct: 72 QHILENSRVGEAPRTDG-VVGPGMTVTVAFEDDDEELTFLLASREESGAPIDVYSPQSPL 130 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEIL 153 A+ GK++G+ + P G T EIL Sbjct: 131 GSAINGKKVGEKATYTLPNGRSMTVEIL 158 >gi|119963879|ref|YP_947068.1| transcription elongation factor GreA [Arthrobacter aurescens TC1] gi|119950738|gb|ABM09649.1| putative transcription elongation factor GreA [Arthrobacter aurescens TC1] Length = 164 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 12/147 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD++Q EL R I++ I AR GDL EN Y AAKE Q E R+ +L Sbjct: 12 LTQEAFDRLQAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++ A+V + G + G V V + +GD++ + +I GD + DV S Sbjct: 72 TALLRDAQVGEAPADDG-IVEPGMLV--VARIAGDEETFLLGSREIAGDSDLDV----FS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148 SP+ A+IG + GD +S AP G++ Sbjct: 125 EKSPLGAAIIGHKEGDSLSYVAPNGKE 151 >gi|146294887|ref|YP_001185311.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|145566577|gb|ABP77512.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 114 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L + +++D S +I FGA L E ++G++ Y+IVG E D + G Sbjct: 6 DSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGY 64 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++I SP+ARALIGK++ D + V P G K + I ++ Sbjct: 65 ITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINEI 100 >gi|166153977|ref|YP_001654095.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis 434/Bu] gi|166154852|ref|YP_001653107.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335174|ref|ZP_07223418.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis L2tet1] gi|165929965|emb|CAP03448.1| Transcription elongation factor [Chlamydia trachomatis 434/Bu] gi|165930840|emb|CAP06402.1| Transcription elongation factor [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 715 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDII 139 + ++GK +G+ + Sbjct: 687 QEMVGKAVGETV 698 >gi|15605367|ref|NP_220153.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis D/UW-3/CX] gi|76789375|ref|YP_328461.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia trachomatis A/HAR-13] gi|237803065|ref|YP_002888259.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis B/Jali20/OT] gi|255311460|ref|ZP_05354030.1| Transcription elongation factor [Chlamydia trachomatis 6276] gi|255317761|ref|ZP_05359007.1| Transcription elongation factor [Chlamydia trachomatis 6276s] gi|255349021|ref|ZP_05381028.1| Transcription elongation factor [Chlamydia trachomatis 70] gi|255503560|ref|ZP_05381950.1| Transcription elongation factor [Chlamydia trachomatis 70s] gi|7531128|sp|O84641|GREA_CHLTR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3329084|gb|AAC68240.1| Transcription Elongation Factor G [Chlamydia trachomatis D/UW-3/CX] gi|76167905|gb|AAX50913.1| GreA [Chlamydia trachomatis A/HAR-13] gi|231274299|emb|CAX11094.1| Transcription elongation factor [Chlamydia trachomatis B/Jali20/OT] gi|296436174|gb|ADH18348.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/9768] gi|296437102|gb|ADH19272.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/11222] gi|296438034|gb|ADH20195.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/11074] gi|297140536|gb|ADH97294.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/9301] gi|297748766|gb|ADI51312.1| GreA [Chlamydia trachomatis D-EC] gi|297749646|gb|ADI52324.1| GreA [Chlamydia trachomatis D-LC] Length = 715 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKIALERRARLQEEIHVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDII 139 + ++GK +G+ + Sbjct: 687 QEMVGKAVGETV 698 >gi|289525679|emb|CBJ15160.1| Transcription elongation factor [Chlamydia trachomatis Sweden2] Length = 715 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDII 139 + ++GK +G+ + Sbjct: 687 QEMVGKAVGETV 698 >gi|255507239|ref|ZP_05382878.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis D(s)2923] gi|296435247|gb|ADH17425.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis E/150] gi|296438966|gb|ADH21119.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis E/11023] Length = 715 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDII 139 + ++GK +G+ + Sbjct: 687 QEMVGKAVGETV 698 >gi|222106218|ref|YP_002547009.1| transcription elongation factor [Agrobacterium vitis S4] gi|221737397|gb|ACM38293.1| transcription elongation factor [Agrobacterium vitis S4] Length = 161 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 11/106 (10%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 Q A ++LN LE + A+V+ ++ D ++FG TV+ ++ G + Y+IVG Sbjct: 65 QMAGPFRDLNY-----LEERLHTAQVMP-DPITADSVSFGTTVTFT-RDDGRVQTYRIVG 117 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + EAD ++G +S SP+ARALIGK +GD++S+ G++ EI + Sbjct: 118 EDEADPKAGSISYVSPVARALIGKAVGDVVSL----GDQELEITAI 159 >gi|114049370|ref|YP_739920.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113890812|gb|ABI44863.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 113 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L + +++D S +I FGA L E +G++ Y+IVG E D + G Sbjct: 5 DSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGERVRYRIVGKDELDTKLGY 63 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 ++I SP+ARALIGK++ D + V P G K + I Sbjct: 64 ITIDSPMARALIGKQVDDEVVVQTPSGPKEWYI 96 >gi|189423237|ref|YP_001950414.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] gi|189419496|gb|ACD93894.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] Length = 142 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 56 QNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 ++L + R + ELE + +AE++D + + D + + VSL + +SG++ Y +V +AD Sbjct: 30 RSLRDSRYIEELEQELLKAEIVDATGVPPDVVTMNSRVSLQDLDSGEQLQYTLVFPGDAD 89 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + G +SI +PI AL G GD IS + PGG + +I +VL+ Sbjct: 90 LNLGKISILAPIGTALFGYRTGDRISWSVPGGVRKLKIKKVLY 132 >gi|188584758|ref|YP_001916303.1| transcription elongation factor GreA [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349445|gb|ACB83715.1| transcription elongation factor GreA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 164 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 4/134 (2%) Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 R++E RI AIS +GD+SEN+EY AK Q EGR+ LE ++ A+++D Sbjct: 34 RRKEVAERIKTAIS----FGDISENSEYDDAKNEQAFIEGRIITLEKMLRNAKIVDKDET 89 Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 ++ G TV L + ++ Y IVG E++ +S SP+ A+IGK++G+++ V Sbjct: 90 DNKVVSIGNTVVLKDLEYDEEVEYTIVGSAESNPTDQKISNESPVGEAIIGKKVGEVVEV 149 Query: 142 NAPGGEKTYEILQV 155 P G YEI+ + Sbjct: 150 KVPAGVIEYEIVDI 163 >gi|255534798|ref|YP_003095169.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium 3519-10] gi|255340994|gb|ACU07107.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium 3519-10] Length = 183 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 D S EY+ A +LN R+ L + A++ID + +S + FGATV+ N+ Sbjct: 71 DPSHEREYRIA--FNHLN-ARLQLLNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNL 127 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ +Q+VG EA++ G ++ ++P+A+ALI ++G+ +++ +EIL + Sbjct: 128 RQTFQLVGVDEANISKGKLAFTTPLAKALINSKVGEKVTLQLGDKTNIFEILSI 181 >gi|307069596|ref|YP_003878073.1| putative transcription elongation factor GreA [Candidatus Zinderia insecticola CARI] gi|306482856|gb|ADM89727.1| putative transcription elongation factor GreA [Candidatus Zinderia insecticola CARI] Length = 157 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 1/102 (0%) Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID-ISTMSGDRIAFGATVSLV 95 AR+ GDLSEN++++ AKE + + E ++ LE I ++ID + + D+I F + L Sbjct: 34 ARSNGDLSENSDFKIAKEKKYILEKKILILEKKINNFKIIDPLYIKNKDKIFFSCKLKLF 93 Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + K QIVGD E++ + +SI S +++ LI K++ D Sbjct: 94 CYLNKKKIKLQIVGDCESNFKKNKISILSKLSKVLIKKKIND 135 >gi|311746267|ref|ZP_07720052.1| transcription elongation factor GreA [Algoriphagus sp. PR1] gi|126576500|gb|EAZ80778.1| transcription elongation factor GreA [Algoriphagus sp. PR1] Length = 166 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 58/101 (57%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N ++ L+ I A+++D+S + I FGA V+L S YQ+VG EAD+ Sbjct: 66 NFISAKIKLLDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADIS 125 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SPIA LIGK++G+ +++ G++ +E++++ + Sbjct: 126 KNKISFISPIAMILIGKKVGEKATLSLTKGDRVFEVMEIKY 166 >gi|261855687|ref|YP_003262970.1| transcription elongation factor GreB [Halothiobacillus neapolitanus c2] gi|261836156|gb|ACX95923.1| transcription elongation factor GreB [Halothiobacillus neapolitanus c2] Length = 175 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 1/143 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++++G ++ EL + ER +++A+SEA A GD SENAEY K + R+ L Sbjct: 6 ISARGHARLLAELDQLWRVERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA ++L+ + + + +VG E D + L+SI SP+ Sbjct: 66 QKRLGDIKVVRQPPTDMNKVYFGARITLLYADDRE-QTVCLVGPDEIDPANQLISIDSPL 124 Query: 127 ARALIGKELGDIISVNAPGGEKT 149 A+A++GK L + + P T Sbjct: 125 AKAVLGKALDAEVVLFLPSETST 147 >gi|307319133|ref|ZP_07598563.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306895240|gb|EFN25996.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] Length = 160 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 13/115 (11%) Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 + A ++++NE G + EL R + S D +AFG+TV+ ++ G Sbjct: 50 FDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVTF-SRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + Y+IVG+ EAD ++G +S SP+AR L+GK +GD+ SV G++ EIL + Sbjct: 109 RVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASV----GDQELEILAI 159 >gi|16262532|ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium meliloti 1021] gi|307300722|ref|ZP_07580497.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|14523141|gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904256|gb|EFN34841.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 160 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 13/115 (11%) Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 + A ++++NE G + EL R + S D +AFG+TV+ ++ G Sbjct: 50 FDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVTF-SRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + Y+IVG+ EAD ++G +S SP+AR L+GK +GD+ SV G++ EIL + Sbjct: 109 RVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASV----GDQELEILAI 159 >gi|300743808|ref|ZP_07072828.1| transcription elongation factor GreA [Rothia dentocariosa M567] gi|311113051|ref|YP_003984273.1| transcription elongation factor GreA [Rothia dentocariosa ATCC 17931] gi|300380169|gb|EFJ76732.1| transcription elongation factor GreA [Rothia dentocariosa M567] gi|310944545|gb|ADP40839.1| transcription elongation factor GreA [Rothia dentocariosa ATCC 17931] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ QEL + R I+ I+ AR GDL EN Y AA++ Q NE R+ +L Sbjct: 9 LTQDAYDRLTQELEYLSGPYRQEIVDRIAAARDEGDLRENGGYHAARDEQGKNEARINQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120 ++++ A+V D + G +A G ++E + ++G +E A+ + Sbjct: 69 KHLLENAQVGDAPSDDG-VVALGM---VIEAEVASRSMKFLLGSREIEETLPANSDLKVF 124 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 S SP+ A++G + GD ++ AP G E T +I+ V Sbjct: 125 SEKSPMGAAILGAKEGDEVTYLAPNGKELTAKIVSV 160 >gi|197117702|ref|YP_002138129.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem] gi|197087062|gb|ACH38333.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem] Length = 143 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 59/106 (55%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 A+ Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V Sbjct: 28 ARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELVYTLVFPN 87 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 EAD+ SG +SI +P+ A+IG GD I+ PGG K ++ ++L+ Sbjct: 88 EADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILY 133 >gi|152981797|ref|YP_001351733.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] gi|151281874|gb|ABR90284.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] Length = 175 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 60 EGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ L+ + AEV+D S + GDRI FGA+V E +G+ IVG E D G Sbjct: 74 EQRIHYLQTRVESAEVVDASVHADGDRIFFGASVDY-ENTAGETHTATIVGLDELDPAQG 132 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+A++L+G E GD + + P G + +L V + Sbjct: 133 RISWLSPLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171 >gi|241205105|ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858995|gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 9/99 (9%) Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 Y AA ++++NE R + +L + R + S S D +AFG+TV+ ++ G Sbjct: 50 YDAASPIEDVNERRRQAASPLRDLRYLTARLRTAQLMPSPTSIDTVAFGSTVTF-RRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + Y+IVG+ EAD ++G +S SP+AR L+GK +GD++ Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDMV 147 >gi|163841781|ref|YP_001626186.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] gi|162955257|gb|ABY24772.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] Length = 163 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + F+++Q EL R ++K I +AR+ GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAFNRLQGELEQLSGPGRAEVVKKIEQARSEGDLKENGGYHAAKEEQGKIEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++ A V + +G + +V K + +K + ++ GD + DV S Sbjct: 71 TELLRDAHVGESPEDNG---VVEPGMLVVAKIANEKTTFLLGSREVAGDTDLDV----FS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SP+ A+ G + GD IS AP G+ Sbjct: 124 EKSPLGAAIQGHKAGDKISYTAPNGK 149 >gi|311898109|dbj|BAJ30517.1| putative transcription elongation factor GreA [Kitasatospora setae KM-6054] Length = 165 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++K++ E R I K I AR GDL ENA Y AAK+ Q E R+ +L Sbjct: 11 LTQDHYNKLKAEFDHLTGPWRIEIAKKIEAAREEGDLKENAGYHAAKDEQGKTEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ RA+V + SG +A G V + + + D + + + D + S SP Sbjct: 71 SQLLERAKVGEAPADSG-VVAPGMLVKVAFDGDEDDTMEFLLASREVTDGDIDVYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + RA+IGK +G+ P G+K Sbjct: 130 LGRAIIGKSVGEDAQYELPNGKK 152 >gi|296271052|ref|YP_003653684.1| transcription elongation factor GreA [Thermobispora bispora DSM 43833] gi|296093839|gb|ADG89791.1| transcription elongation factor GreA [Thermobispora bispora DSM 43833] Length = 167 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+ L Sbjct: 12 LTQEAYDRLKAEYEYLTGPARAEIAKKIEAAREEGDLRENGGYHAAKDEQGKLEARIYRL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ A+V G + G TV++ ++ + + +E+ V + S +SP+ Sbjct: 72 REILENAKVGQPPADDG-IVEPGMTVTVRFDGEDEEVTFLLASREESGVPIDVYSPNSPL 130 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +A+ GK++G+ + P G +++ EIL+ + Sbjct: 131 GKAITGKKVGERATFTLPNGKQRSVEILEAV 161 >gi|170782755|ref|YP_001711089.1| putative transcription elongation factor [Clavibacter michiganensis subsp. sepedonicus] gi|169157325|emb|CAQ02512.1| putative transcription elongation factor [Clavibacter michiganensis subsp. sepedonicus] Length = 162 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 10 LTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQGKIEARIRQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-----NYQIVGDQEADVQSGLVS 121 ++ AEV D G +L+ +GD+ N +I GD + DV S Sbjct: 70 TQLLRTAEVGDAPESHGVVEPGTVVTALI---AGDETKFLLGNREIAGDSDLDV----YS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SP+ A+IG E+G + AP G Sbjct: 123 EQSPLGAAIIGWEVGQKGAYTAPNG 147 >gi|260906828|ref|ZP_05915150.1| GreA/GreB family elongation factor [Brevibacterium linens BL2] Length = 164 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD++ QEL R I + I AR GDL EN Y AA+E Q E R+ +L Sbjct: 12 LTQEAFDRLSQELEHLSGPGRAEIAEKIEAARDEGDLKENGGYHAAREEQGKQEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 E ++ A+V S G ++ G+ V+ K +G+ + +I GD + DV S Sbjct: 72 ELLLQSAKV-GSSDSDGKTVSPGSVVTA--KVAGNDMRFLLGSREIAGDSDIDV----FS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148 SP+ A++G +G S AP G++ Sbjct: 125 EKSPLGAAVLGVAVGGKTSYEAPNGKE 151 >gi|297566645|ref|YP_003685617.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946] gi|296851094|gb|ADH64109.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946] Length = 158 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 11/161 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKA---ISEARAYGDLSENAEYQAAKELQN 57 M +I +T G++++++EL ++ER R+ A + E D +++ + AK + Sbjct: 1 MAREIRLTRDGYERLKREL----EQERARLQDATRILQELMESSDDYDDSGLEDAKREKA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQ 116 E R+ LE+ ++RA VI+ + G + GA V+L + G++ Q+V EA V Sbjct: 57 RIEARIDSLEDTLSRAVVIEGAQEKG-VVTLGAIVTLKAREGKGEQMEVQVVAPAEASVL 115 Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + IS SP+ +AL+G++LG+ + + P G + +E++ V Sbjct: 116 ENPMKISDESPMGKALLGRKLGETVHLETPKGHREFEVISV 156 >gi|237804986|ref|YP_002889140.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273286|emb|CAX10201.1| Transcription elongation factor [Chlamydia trachomatis B/TZ1A828/OT] Length = 715 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +AR GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARVLGDLRENSEYKIALERRARLQEEIHVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDII 139 + ++GK +G+ + Sbjct: 687 QEMVGKAVGETV 698 >gi|281356514|ref|ZP_06243006.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC BAA-548] gi|281317206|gb|EFB01228.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC BAA-548] Length = 698 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 6/129 (4%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GDRI 86 P +A+ ARA+GD EN+E+ AAKE +N R ELE +TR + I + ++ D Sbjct: 562 PENREALKVARAHGDFRENSEFDAAKERRNFLSRRRGELERELTRIQPISLKSVRVEDSA 621 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 G+ + L ++N G+K+ YQ++G + D + +S + + +A++ +++G S G Sbjct: 622 VIGSEIELQDEN-GEKEVYQLLGAWDGDPERRFLSYRTRLGKAVLNRKVGSEFS----DG 676 Query: 147 EKTYEILQV 155 + Y+++ V Sbjct: 677 SRQYKLIAV 685 >gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus ATCC 19977] gi|238688921|sp|B1MKJ7|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium abscessus] Length = 164 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINERREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124 + ++ A+V + T SG + + + GD + + I QE D + + S SS Sbjct: 68 QELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGKLEVYSPSS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ ALI ++G+ S P G Sbjct: 128 PLGGALIDAKVGETRSYTVPNG 149 >gi|293189385|ref|ZP_06608108.1| transcription elongation factor GreA [Actinomyces odontolyticus F0309] gi|292821848|gb|EFF80784.1| transcription elongation factor GreA [Actinomyces odontolyticus F0309] Length = 159 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 + S +P+ A+IG + GD +S AP G Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 144 >gi|315606055|ref|ZP_07881086.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 180 str. F0310] gi|315312337|gb|EFU60423.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 180 str. F0310] Length = 159 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 + S +P+ A+IG + GD +S AP G Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 144 >gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL B-59395] gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL B-59395] Length = 162 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTPESYDRLKGELD-SLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++ +A+V + SG + + + DK+ + I +E + S SSP+ Sbjct: 68 QDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEGSGDIEIYSPSSPL 127 Query: 127 ARALIGKELGDIISVNAPGG 146 ALI ++G+ + P G Sbjct: 128 GAALIDAKVGESRTYTVPSG 147 >gi|154507712|ref|ZP_02043354.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC 17982] gi|153797346|gb|EDN79766.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC 17982] Length = 178 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 20 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 79 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 80 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 135 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 + S +P+ A+IG + GD +S AP G Sbjct: 136 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 163 >gi|325962607|ref|YP_004240513.1| transcription elongation factor GreA [Arthrobacter phenanthrenivorans Sphe3] gi|323468694|gb|ADX72379.1| transcription elongation factor GreA [Arthrobacter phenanthrenivorans Sphe3] Length = 164 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 12/146 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL R I++ I +AR GDL EN Y AAKE Q E R+ +L Sbjct: 12 LTQEAFDRLKAELDHLSGPGRAEIVQKIDQARQEGDLKENGGYHAAKEEQGKIEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++ A V + G + G V V + +GD++ + +I GD + DV S Sbjct: 72 TVLLRDAHVGEAPADDG-IVEPGMIV--VARIAGDEETFLLGSREIAGDSDLDV----FS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SP+ A++G + G+ +S AP G+ Sbjct: 125 EKSPLGAAILGHKEGESLSYTAPNGK 150 >gi|220922797|ref|YP_002498099.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] gi|219947404|gb|ACL57796.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] Length = 153 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 I GD + FG+TV+ VE+ G + Y IVG+ EAD G ++ +P+ARAL GK+ GD Sbjct: 80 IEPTPGDTVHFGSTVT-VEREDGTRLTYHIVGEDEADPAKGSIAYVAPLARALTGKQAGD 138 Query: 138 IISVNAPGGEKTYEILQV 155 +++V + EI++V Sbjct: 139 VVTV----ADHEVEIIEV 152 >gi|84497875|ref|ZP_00996672.1| putative transcription elongation factor [Janibacter sp. HTCC2649] gi|84381375|gb|EAP97258.1| putative transcription elongation factor [Janibacter sp. HTCC2649] Length = 162 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL R I+ I AR GDL EN Y AA+E Q NE R+ +L Sbjct: 11 LTQEAFDRLKAELEELSGPGRADIVAKIEAAREEGDLKENGGYHAAREEQGKNEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ A I T D I + VE GD++ + + + AD + S SPI Sbjct: 71 TQLLENA--IIGETPPDDGIVEPGMLVTVEI-FGDEETFLLGSREIADGSLQVYSEQSPI 127 Query: 127 ARALIGKELGDIISVNAPGGEK 148 A+ GK+ GD ++ AP G++ Sbjct: 128 GSAVNGKKAGDSVTYEAPNGKQ 149 >gi|209549738|ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535494|gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 9/99 (9%) Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 Y AA ++++NE G + +L + R + S D +AFG+TV+ ++ G Sbjct: 50 YDAASTVEDVNERRRQAAGPLRDLRYLAARLRTAQLMADPASTDTVAFGSTVTF-SRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + Y+IVG+ EAD ++G +S SP+AR L+GK +GD++ Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDVV 147 >gi|15807365|ref|NP_296096.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6460189|gb|AAF11920.1|AE002068_3 transcription elongation factor [Deinococcus radiodurans R1] Length = 183 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 11/162 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQ--QEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M +P+T +G ++Q L Q +EE R+++ EA + +E+ + AA+E Sbjct: 24 MTQPLPLTPEGLSRLQAALEREQARREEARRVVQEQMEA----NENESLDLAAAQETLGA 79 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ELE+ + RA V+ + R A G+ V+L+ G + +V EA G Sbjct: 80 VEARIEELEDQLARAVVLAPGAGNDGRAAVGSRVTLLNIGLGRELPLHLVSAAEAAAGPG 139 Query: 119 -----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 LVS SP+ RAL+G+ G+ +V+ + Y +L V Sbjct: 140 TSGVALVSTESPVGRALLGRRAGEEFTVDLGRTQAQYRVLMV 181 >gi|297202039|ref|ZP_06919436.1| transcription elongation factor greA [Streptomyces sviceus ATCC 29083] gi|197714326|gb|EDY58360.1| transcription elongation factor greA [Streptomyces sviceus ATCC 29083] Length = 166 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + + K+++EL + R + I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYTKLKEELAYLSGPAREEVTAKIAAAREEGDLRENGGYHAAKEEQGKQELRIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ +A+V + T + +A G V++ + + D + + + A S SP Sbjct: 71 TQLLEKAKVGEAPTSTDGAVAPGMVVTIAFDGDESDTMTFLLASREYASADVETYSPQSP 130 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + +IG ++G+ P G+K Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153 >gi|271969724|ref|YP_003343920.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM 43021] gi|270512899|gb|ACZ91177.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM 43021] Length = 166 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+ L Sbjct: 12 LTQEAYDRLKAEFEYLSGPGRVDIAKKIEAAREEGDLKENGGYHAAKDEQGKMEARIFHL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 II A V + G + G TV++ + ++ + + +E+ + S SP+ Sbjct: 72 RQIIDSARVGEAPRTEG-VVGPGMTVTVRFEGDDEEVAFLLASREESGAPIDVYSPKSPL 130 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 A+ GK++G+ + P G T EIL+ + Sbjct: 131 GSAINGKKIGEKATYTMPNGRSNTVEILEAV 161 >gi|289610114|emb|CBI60320.1| unnamed protein product [Sordaria macrospora] Length = 108 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R FGATV++ +++ + + ++VGD EAD G + +SP+ARAL G +GD+ +V P Sbjct: 36 RAWFGATVTIADEDD-NHRTLELVGDDEADAGKGRIGWNSPMARALRGSAVGDVRTVALP 94 Query: 145 GGEKTYEILQV 155 G K YE++ + Sbjct: 95 AGAKEYEVMAI 105 >gi|78223803|ref|YP_385550.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] gi|78195058|gb|ABB32825.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 142 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 57/96 (59%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELE+ + RAEV++ + D I + V L + +SG++ +Y +V +A ++ +S Sbjct: 37 HLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRIS 96 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ AL+G +GD I+ PGG + ++ ++L+ Sbjct: 97 ILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILY 132 >gi|148273428|ref|YP_001222989.1| transcription elongation factor GreA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831358|emb|CAN02314.1| transcription elongation factor GreA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 162 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 10 LTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQGKIEARIRQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-----NYQIVGDQEADVQSGLVS 121 ++ AE+ D G +L+ +GD+ N +I GD + DV S Sbjct: 70 TQLLRTAELGDAPESHGVVEPGTVVTALI---AGDETKFLLGNREIAGDSDLDV----YS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SP+ A+IG E+G + AP G Sbjct: 123 EQSPLGAAIIGWEVGQKGAYTAPNG 147 >gi|253701567|ref|YP_003022756.1| GreA/GreB family elongation factor [Geobacter sp. M21] gi|251776417|gb|ACT18998.1| GreA/GreB family elongation factor [Geobacter sp. M21] Length = 143 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 59/108 (54%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 + + Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V Sbjct: 26 EKVRSTQTRDSKNLQELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSKEELVYTLVF 85 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 E+D+ SG +SI +P+ A+IG GD I+ PGG K ++ +VL+ Sbjct: 86 PNESDLASGKISILAPVGTAMIGFRTGDSITWPVPGGMKNLKVKKVLY 133 >gi|28875484|gb|AAO59965.1| GreA [uncultured bacterium] Length = 597 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 EL L E +A++ ++ A VI +++ D + FGA V +VE + G + +Q+VG+ EA Sbjct: 495 ELATL-ERELAQVSAVLQGAIVIRLASPPRDEVRFGAEV-VVEDDRGSRSRFQLVGENEA 552 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + GLV+ SP+ RAL G LG + P G Y + ++ Sbjct: 553 APERGLVNWFSPLGRALAGARLGQRVEWTTPAGRGAYVVREI 594 >gi|312194554|ref|YP_004014615.1| GreA/GreB family elongation factor [Frankia sp. EuI1c] gi|311225890|gb|ADP78745.1| GreA/GreB family elongation factor [Frankia sp. EuI1c] Length = 160 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R + I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTTTGRTELANKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ-IVG---DQEADVQ 116 R+ +L +++ A+V + + +G +A TV V + GDK+ + ++G D A + Sbjct: 61 ARIRQLNDLLRDAKVGEAAASTG--VAGPGTVVEV-RFQGDKETEKFLIGSREDHSAPID 117 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 + S +SP+ A+ G + GD ++ P G + EI+ V Sbjct: 118 --VFSPASPLGGAVTGHKAGDKVTYTLPNGRNASVEIVSV 155 >gi|253996329|ref|YP_003048393.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] gi|253983008|gb|ACT47866.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] Length = 168 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 30/144 (20%) Query: 43 LSENAEY---QAAKELQNLNEGRMAELENIITRAE------------------------- 74 +SE+ Y A ELQ L E +AEL + A+ Sbjct: 24 ISEHPNYVTPSGALELQTLEESLVAELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSA 83 Query: 75 -VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 ++D + S + + FGAT+ VE +G + + IVG+ EAD VS SP+A++L+G+ Sbjct: 84 ILVDPTKQSHETVLFGATIE-VEDGAGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQ 142 Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157 ++GD ++ P G EIL + + Sbjct: 143 KVGDTVTWQRPAGNINLEILDIHY 166 >gi|91976219|ref|YP_568878.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisB5] gi|91682675|gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB5] Length = 160 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 15/115 (13%) Query: 50 QAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 +AAK ++++NE R E + A++I T + D +AFG+TV+ ++ G Sbjct: 51 EAAKAIEDVNERRRQEAIPSRDARYFATRVRTAQLIADPT-TADVVAFGSTVTF-KRADG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + Y+IVG+ EAD + G +S SP+AR L+GK +GD+ A GE+ EI+ + Sbjct: 109 RVQTYRIVGEDEADPKVGSISFVSPVARLLMGKAVGDV----AGAGEQELEIIAI 159 >gi|145641638|ref|ZP_01797215.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145273685|gb|EDK13554.1| transcription elongation factor GreA [Haemophilus influenzae 22.4-21] Length = 58 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGF 57 >gi|256824590|ref|YP_003148550.1| transcription elongation factor [Kytococcus sedentarius DSM 20547] gi|256687983|gb|ACV05785.1| transcription elongation factor [Kytococcus sedentarius DSM 20547] Length = 164 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 5/144 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++++ EL + E R I I +AR+ GDL EN Y AAKE Q EGR+A+L Sbjct: 11 LTRAAYERLNAELEQLKGEGRREIAHRIEDARSEGDLKENGGYHAAKEEQGKMEGRIAQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV-SISS 124 ++ AEV + + G V++ + G+ + + + G++E AD V S S Sbjct: 71 TTLLQNAEVGEEPPADDGVVEPGMIVTI--EMFGETETF-LFGNREIADGDDMEVYSERS 127 Query: 125 PIARALIGKELGDIISVNAPGGEK 148 P+ +A+ G+ G+ I AP G+K Sbjct: 128 PLGKAIDGRNQGETIGYEAPNGKK 151 >gi|295395791|ref|ZP_06805979.1| transcription elongation factor GreA [Brevibacterium mcbrellneri ATCC 49030] gi|294971326|gb|EFG47213.1| transcription elongation factor GreA [Brevibacterium mcbrellneri ATCC 49030] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 11/150 (7%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D+ +T + F+++ +EL R I + I AR GDL EN Y AA+E Q E Sbjct: 7 ADQTWLTPQAFERLTKELEHLSGPGRTEIAERIESARDEGDLKENGGYHAAREEQGKLEA 66 Query: 62 RMAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ELE+++ A ++S GD + G V+L G +K ++G +E + Sbjct: 67 RIRELEHLLQNA---NVSEPDGDESTVTPGKLVTL---KMGRRKIEFLLGSREIISEEDH 120 Query: 120 VSI---SSPIARALIGKELGDIISVNAPGG 146 V + SP+ A+ GK++GD + AP G Sbjct: 121 VDVFSEKSPLGAAVNGKKVGDKVEYEAPNG 150 >gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum DSM 7109] gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 174 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 7/145 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + +E RP + I+E R GDL EN Y AA+E Q E R+A L Sbjct: 9 LTQESYDRLNAEL-FALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV--EKNSGDKKNYQI--VGDQEADVQSGLVSI 122 E ++ A + + SG +A TV V + + DK+ + I G + ++ + S Sbjct: 68 EELLDNATIGEAPQESG--VALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPELETYST 125 Query: 123 SSPIARALIGKELGDIISVNAPGGE 147 +P+ AL+G ++G+ P G+ Sbjct: 126 DAPLGAALVGAKVGETREYETPTGD 150 >gi|297559077|ref|YP_003678051.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843525|gb|ADH65545.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 166 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL R I + I AR GDL EN Y AAKE Q E R+ +L Sbjct: 12 LTQEAYDRLKSELDHLSGSGRIEIAEKIEAAREEGDLKENGGYHAAKEEQGKMEARILQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ A V + G + G TV++ D+ + + +E+ + S SP+ Sbjct: 72 TEILRTARVGEAPHTEG-VVGPGMTVTVKFDGDDDEVTFLLASREESGSPIDVYSPRSPL 130 Query: 127 ARALIGKELGDIISVNAPGGE 147 A+ GK +G+ +S P G+ Sbjct: 131 GSAINGKRVGENVSYTLPNGK 151 >gi|283458641|ref|YP_003363276.1| transcription elongation factor [Rothia mucilaginosa DY-18] gi|283134691|dbj|BAI65456.1| transcription elongation factor [Rothia mucilaginosa DY-18] Length = 189 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD++ QEL + R I+ I++AR GDL EN Y AA++ Q NE R+ +L Sbjct: 33 LTQDAFDRLTQELEYLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAKNEARIKQL 92 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120 ++++ A + D T + D + V +E + ++G +E A + Sbjct: 93 KHLLETAHIGD--TPADDGVVEHGMV--IEAEVAGRTLKFLLGSREIEDTLPAGSDLKVF 148 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148 S SP+ A++G + GD ++ AP G++ Sbjct: 149 SEKSPLGAAIMGAKQGDEVTYTAPNGKE 176 >gi|116252606|ref|YP_768444.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257254|emb|CAK08349.1| putative transcription elongation factor [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 11/100 (11%) Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99 Y AA ++++NE R + +L + R A+++ +T S D +AFG+TV+ ++ Sbjct: 50 YDAASPIEDVNERRRQAANPLRDLRYLAARLRTAQLMPAAT-SIDTVAFGSTVTF-RRDD 107 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD + Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDAV 147 >gi|84387295|ref|ZP_00990316.1| transcription elongation factor GreA [Vibrio splendidus 12B01] gi|84377942|gb|EAP94804.1| transcription elongation factor GreA [Vibrio splendidus 12B01] Length = 64 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 41/54 (75%) Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 YQIV + EA++++G +S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I Sbjct: 11 YQIVSEDEAEIKTGRISVKSPIARGLIGKMEGDEVIISTPGGDKDFEIDKVEYI 64 >gi|220912010|ref|YP_002487319.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus A6] gi|219858888|gb|ACL39230.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus A6] Length = 164 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 12/146 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +L Sbjct: 12 LTQEAFDRLKAELDQLSGPGRAEIVQKIDAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 ++ A V + + + D I + +V + +GD++ + +I GD + DV S Sbjct: 72 TVLLRDAHVGE--SPADDGIVEPGMI-VVARIAGDEETFLLGSREIAGDSDLDV----FS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SP+ A++G + G+ +S AP G+ Sbjct: 125 EKSPLGSAILGHKEGETLSYVAPNGK 150 >gi|148252734|ref|YP_001237319.1| transcription elongation factor regulatory protein [Bradyrhizobium sp. BTAi1] gi|146404907|gb|ABQ33413.1| GreA/GreB family elongation factor [Bradyrhizobium sp. BTAi1] Length = 160 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 S + IAFG+TV+ E+ G + Y+IVG+ EAD + G++S SP+AR L+GK +GD++ + Sbjct: 91 STETIAFGSTVTF-ERGDGRVQTYRIVGEDEADPKRGMISYVSPVARLLMGKSVGDVVEM 149 Query: 142 N 142 + Sbjct: 150 S 150 >gi|227534584|ref|ZP_03964633.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187833|gb|EEI67900.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 128 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ L+ +I A+V + D G ++L + D+ Y++VG EA + Sbjct: 59 EGRLRYLDKLIRYAKV--THPAASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDK 116 Query: 120 VSISSPIARAL 130 ++I+SP+ A+ Sbjct: 117 LAINSPLGAAI 127 >gi|226355352|ref|YP_002785092.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226317342|gb|ACO45338.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 162 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 9/152 (5%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 + ++ +T +GF+++Q+ L QQ E RI++ E A +E+ + AK + Sbjct: 5 IRQVRLTREGFERLQKTLEQEQQRLAEATRILQEQMETSAD---TEDTGLEDAKREKMAI 61 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118 E R+ ELE+ + RA +I+ G R+ GA V+L + + Q+V EA V G Sbjct: 62 EARLDELEDTLARATIIEDHENDG-RVELGAIVNLSNETTKKDMKVQVVSAPEAAVLGGS 120 Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEK 148 +S SP+ + L+G++ GD VN GG++ Sbjct: 121 LPRISEDSPVGKELMGRKTGDSFVVNLEGGKQ 152 >gi|188583529|ref|YP_001926974.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] gi|179347027|gb|ACB82439.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] Length = 154 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+ARAL GK +GD Sbjct: 81 VEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPATGSISYVAPLARALTGKGVGD 139 Query: 138 IISVNAPGGEKTYEILQV 155 ++VN + +EI ++ Sbjct: 140 TVTVN----DHEFEIAEI 153 >gi|227820950|ref|YP_002824920.1| transcription elongation factor regulatory protein [Sinorhizobium fredii NGR234] gi|227339949|gb|ACP24167.1| putative transcription elongation factor [Sinorhizobium fredii NGR234] Length = 160 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 13/115 (11%) Query: 49 YQAAKELQNLNEGR---MAELENIITRAEVIDISTM-----SGDRIAFGATVSLVEKNSG 100 Y AA +++ NE R L ++ AE + + + SG+ +AFG+TV+ ++ G Sbjct: 50 YSAASAIEDANERRRQAAGPLRDLRYFAERVRTAQLVPDPTSGETVAFGSTVTF-SRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + Y+IVG+ EAD + G +S SP+AR L+GK G+++S+ G++ EI+ + Sbjct: 109 RVQTYRIVGEDEADPKLGSISYVSPVARILLGKANGEVVSI----GDQELEIVAI 159 >gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea NRRL 2338] gi|166200697|sp|A4F866|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] Length = 162 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD+++ EL RP I I+EAR GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQDAFDRLKSELD-ELVGNRPVIAAKINEAREEGDLKENGGYHAAREEQGHLESRIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V D+ T +G +A +V V + D+ ++ +E L S SS Sbjct: 68 QELLRTAKVGDVPTEAG--VAKPGSVLTVRYDDEDETEKFLLATREEGAHGDLEVYSPSS 125 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ +AL+ + G+ P G Sbjct: 126 PLGQALLDAKEGETREYELPNG 147 >gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM 43827] gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM 43827] Length = 162 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQEAYDRLKAELD-EMIENRPVIAAEINARREEGDLRENGGYHAAREEQGKQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSISS 124 + ++ A+V + T++G IA V V D+ ++ +E G + S SS Sbjct: 68 QELLRVAKVGEAPTVTG--IAAPGMVLTVRYEGDDETEEFLLATREEGAHGGTEVYSPSS 125 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ +AL+G + G+ P G Sbjct: 126 PLGKALLGAKEGETREYELPNG 147 >gi|316932887|ref|YP_004107869.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315600601|gb|ADU43136.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 174 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 S D IAFG+TV+ + G + Y+IVG+ EAD + G +S SP+AR+L+GK +GD++ Sbjct: 105 STDEIAFGSTVTF-RRADGRVQTYRIVGEDEADPKQGTISFVSPVARSLMGKSVGDVVGK 163 Query: 142 NA 143 A Sbjct: 164 GA 165 >gi|158312680|ref|YP_001505188.1| transcription elongation factor GreA [Frankia sp. EAN1pec] gi|158108085|gb|ABW10282.1| transcription elongation factor GreA [Frankia sp. EAN1pec] Length = 161 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +++++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A V S+ + G V + + + + I ++ + Sbjct: 61 ARIRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSASIEVF 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 S +SP+ A+ G + GD + P G T EI+ V Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156 >gi|120435907|ref|YP_861593.1| GreA-like transcription elongation factor [Gramella forsetii KT0803] gi|117578057|emb|CAL66526.1| GreA-like transcription elongation factor [Gramella forsetii KT0803] Length = 166 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 15/133 (11%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +++QEL+ + E RA+ + + E + A Q+L +G++ L Sbjct: 31 VTPNGLAELKQELKDLEYE------------RAHVEAENDTEKRRA---QSLIDGKINLL 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A ++D D I FGA V L + SG + +QIVG EAD++ ++ +PI Sbjct: 76 SERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVAPI 135 Query: 127 ARALIGKELGDII 139 A+A+ G+++G+ I Sbjct: 136 AKAVTGRKVGEEI 148 >gi|317124131|ref|YP_004098243.1| transcription elongation factor GreA [Intrasporangium calvum DSM 43043] gi|315588219|gb|ADU47516.1| transcription elongation factor GreA [Intrasporangium calvum DSM 43043] Length = 160 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL R I + I EAR GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTKEAYDRLKAELDQLTGVGRIEIARKIEEAREEGDLKENGGYHAAREEQGKMEARIRQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++ A V + T D + V VE G+++ + + + AD + S SP+ Sbjct: 69 QDLLHNAVVGE--TPPDDGVVEPGMVVTVEL-FGEQEKFLLGSREIADDDLQVFSEKSPM 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 A+ GK +GD S AP G KT E+ Sbjct: 126 GAAVNGKSVGDTTSYEAPTG-KTIEV 150 >gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM 43247] gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM 43247] Length = 164 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I I+E R GDL EN Y AA+E Q E R+ +L+ ++ A+V + T SG + Sbjct: 28 RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQELLNNAKVGEAPTQSG--V 85 Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141 A +V V + GD+K+ + ++ +E Q G S SSP+ ALI ++G+ Sbjct: 86 ALPGSVVTVYYD-GDEKDTETFLIATREEGAQGGDLETYSPSSPLGSALIDAKVGETREY 144 Query: 142 NAPGG 146 + P G Sbjct: 145 SVPSG 149 >gi|170740603|ref|YP_001769258.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46] gi|168194877|gb|ACA16824.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 I GD + FG+TV +VE+ G ++ Y++VG+ EAD G ++ +P+ARAL GK GD Sbjct: 80 IEPTPGDTVHFGSTV-VVEREDGSRQTYRVVGEDEADPARGSIAYVAPLARALTGKLAGD 138 Query: 138 IISVNAPGGEKTYEILQV 155 ++ V + EI++V Sbjct: 139 VVRV----ADHDVEIIEV 152 >gi|171912645|ref|ZP_02928115.1| transcript cleavage factor/unknown domain fusion protein [Verrucomicrobium spinosum DSM 4136] Length = 627 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 58/110 (52%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P+ K I AR YGDL EN EY++A++ Q + + E + RA D +S + + Sbjct: 485 PQNKKDIQIAREYGDLRENFEYKSARQHQAVLLRMQSTYERELRRARGTDFVGVSTETVG 544 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 G V L + +G + I+G + D ++S S +A+ALIGK +GD Sbjct: 545 IGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEMAKALIGKRVGD 594 >gi|134093324|ref|YP_001098399.1| putative transcription elongation factor GreA/GreB [Herminiimonas arsenicoxydans] gi|133737227|emb|CAL60270.1| putative transcription elongation factor GreB [Herminiimonas arsenicoxydans] Length = 193 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +Q EL+ E + ++ E SE + + +E+ E R+ L Sbjct: 29 ITLAGYRHLQSELQRLMNEAQSAAVR--EENPDNATFSEMSPERTVREI----EQRIHYL 82 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + AE++D +G+ +I FGA V+ + SG++++ IVG E D +G +S SP Sbjct: 83 QARLEMAEIVDPGVHAGEEQIFFGANVTY-QHESGEQQSVTIVGLDELDPANGRISWLSP 141 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A++L+G GD +++ +P G++ ++L V + Sbjct: 142 VAQSLLGAYAGDEVTLESPAGKEVLKVLAVHY 173 >gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis SK121] gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis SK121] Length = 167 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 12 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124 + ++ A+V + T SG + + + D + + I +E D + + S +S Sbjct: 71 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPNS 130 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+ ++GD N P G Sbjct: 131 PLGGALLEAKVGDTREYNLPNG 152 >gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4] gi|259647649|sp|C1A2Y4|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4] Length = 164 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124 + ++ A+V + T SG + + + D + + I +E D + + S +S Sbjct: 68 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPNS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+ ++GD N P G Sbjct: 128 PLGGALLEAKVGDTREYNLPNG 149 >gi|218510131|ref|ZP_03508009.1| transcription elongation factor regulatory protein [Rhizobium etli Brasil 5] Length = 160 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 Y AA ++++NE R + +L + R + + S D +AFG+TV+ ++ G Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTARVMPNPTSADVVAFGSTVTF-RRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + Y+IVG+ EAD ++G +S SP+AR L+GK GD + Sbjct: 109 RVQTYRIVGEDEADPKAGSISHVSPVARLLMGKAAGDAV 147 >gi|29839773|ref|NP_828879.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila caviae GPIC] gi|29834120|gb|AAP04757.1| transcription elongation factor GreA [Chlamydophila caviae GPIC] Length = 717 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +AR GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLSGKEMVDNAKEIEDARVLGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D++ G VSL ++N G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDKVGVGCKVSLEDEN-GNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI--LQVLW 157 S +A+ ++ K +G + K Y+I +Q +W Sbjct: 683 KSKLAQEMLDKSVGAAVQFQG----KKYKISRIQSIW 715 >gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS] gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS] gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS] gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS] gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS] gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS] Length = 164 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 + ++ A+V + SG +A +V V + GD+K+ + ++G +E V G + S Sbjct: 68 QELLNNAKVGEAPKQSG--VALPGSVVKVYYD-GDEKDTETFLIGTREQAVNDGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ + P G Sbjct: 125 PASPLGAALIDAKVGETRTYTVPSG 149 >gi|296128797|ref|YP_003636047.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM 20109] gi|296020612|gb|ADG73848.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM 20109] Length = 161 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ +EL + Q R I I+ AR GDL EN Y AA+E Q E R+ EL Sbjct: 10 LTQEAYDRLTEELEYLQTVGRKEITDRIAAARDEGDLKENGGYHAAREEQAKQEARIREL 69 Query: 67 ENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120 + + + I T D + G V+ V +GD+ + +I G + DV Sbjct: 70 Q---AKLRNVQIGTPPDDGVVEPGMVVTAV--VAGDEMTFLLGSREIAGTADIDV----F 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148 S +SP+ A+ G ++GD + AP G + Sbjct: 121 SPTSPLGAAIHGHKVGDSTTYEAPNGRQ 148 >gi|39995838|ref|NP_951789.1| nucleoside diphosphate kinase regulator protein [Geobacter sulfurreducens PCA] gi|39982602|gb|AAR34062.1| nucleoside diphosphate kinase regulator protein, putative [Geobacter sulfurreducens PCA] gi|307634737|gb|ADI83574.2| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400] Length = 142 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 56/96 (58%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELE+ + RAEV++ + D + + V+L + +G++ Y++V +A ++ +S Sbjct: 37 HLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVYELVFPSDARLEENRIS 96 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ AL+G GD I+ PGG + +I ++L+ Sbjct: 97 ILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILY 132 >gi|332671448|ref|YP_004454456.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484] gi|332340486|gb|AEE47069.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484] Length = 161 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + E R I I+ AR GDL EN Y AA+E Q E R+ EL Sbjct: 10 LTQEAYDRLTAELDRLKGEGRAEITARIAAARDEGDLKENGGYHAAREEQAKQEARIREL 69 Query: 67 ENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120 E + + I T D + G V+ V +GD+ + +I G E DV Sbjct: 70 E---AKLRNVQIGTPPDDGVVEPGMVVTAV--VAGDEMVFLLGSREIAGTAEIDV----F 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148 S +SP+ A+ G ++GD S AP G++ Sbjct: 121 SPTSPLGAAINGTKVGDTTSYTAPNGKE 148 >gi|218680300|ref|ZP_03528197.1| transcription elongation factor regulatory protein [Rhizobium etli CIAT 894] Length = 160 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 9/98 (9%) Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 Y AA + ++NE G + +L + R + S D +AFG+TV+ ++ G Sbjct: 50 YDAANTIDDVNERRRQAAGPLRDLRYLKARLRTAQLMADASSTDAVAFGSTVTF-RRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 + Y+IVG+ EAD ++G +S SP+AR L+GK +GD+ Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDV 146 >gi|327187956|gb|EGE55188.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CNPAF512] Length = 160 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 11/100 (11%) Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99 Y AA ++++NE R + +L + R A+V+ T S D +AFG+TV+ ++ Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTAQVMPNPT-SVDVVAFGSTVTF-RRDD 107 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 G + Y+IVG+ EAD ++G +S SP+AR L+GK GD + Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAAGDAV 147 >gi|190892195|ref|YP_001978737.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CIAT 652] gi|218516641|ref|ZP_03513481.1| transcription elongation factor regulatory protein [Rhizobium etli 8C-3] gi|190697474|gb|ACE91559.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CIAT 652] Length = 160 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 11/100 (11%) Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99 Y AA ++++NE R + +L + R A+V+ T S D +AFG+TV+ ++ Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTAQVMPNPT-SVDVVAFGSTVTF-RRDD 107 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 G + Y+IVG+ EAD ++G +S SP+AR L+GK GD + Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAAGDAV 147 >gi|323359453|ref|YP_004225849.1| transcription elongation factor [Microbacterium testaceum StLB037] gi|323275824|dbj|BAJ75969.1| transcription elongation factor [Microbacterium testaceum StLB037] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ QEL R I K I AR GDL EN Y AAK+ Q E R+ L Sbjct: 10 LTQDAYDRLAQELEHLSTTGREEIAKRIEIAREEGDLKENGGYHAAKDEQGKQEARIRTL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK---KNYQIVGDQEADVQSGLVSIS 123 + ++ A+V + G + G V+ V +K N +I + E DV S + Sbjct: 70 QQLLKDAKVGEAPESHG-VVESGTVVTAVVAGGEEKFLLGNREIAANSELDV----YSEA 124 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 SP+ A+IG + G+ S AP G E + EI++V Sbjct: 125 SPLGAAIIGLKEGEKGSYTAPNGKEISVEIVKV 157 >gi|89898809|ref|YP_515919.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila felis Fe/C-56] gi|89332181|dbj|BAE81774.1| transcription elongation and transcript cleavage factor [Chlamydophila felis Fe/C-56] Length = 717 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D++ G VSL E G Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDVVFTDKVGVGCKVSL-EDEKGSLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +A+ ++ K +G S+ G + +Q +W Sbjct: 683 KSKLAQEMLDKSVG--ASLQFQGKKYKISRIQSIW 715 >gi|332286963|ref|YP_004421864.1| fused trancript cleavage factor/uncharacterized domain-containing protein [Chlamydophila psittaci 6BC] gi|325506501|gb|ADZ18139.1| fused trancript cleavage factor/uncharacterized domain-containing protein [Chlamydophila psittaci 6BC] gi|328914193|gb|AEB55026.1| transcription elongation factor GreA [Chlamydophila psittaci 6BC] Length = 717 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVDKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +A+ ++ K +G S+ G + +Q +W Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715 >gi|282889896|ref|ZP_06298434.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500219|gb|EFB42500.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 731 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 1/133 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I T +G+ + Q+ +R E + I AR+ GDL EN+EY+ A E ++ +G + Sbjct: 580 IWTTEEGYLQTQERIRQIGTTEVVENAREIEAARSLGDLRENSEYKFALEKRSRLQGELK 639 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + RA +I + ++++ G+ V L E + Y I+G +AD + ++S S Sbjct: 640 RLSEQLNRARIITKDDIYLNQVSVGSIVEL-EDPEKNVVTYTILGPWDADADTNILSFQS 698 Query: 125 PIARALIGKELGD 137 A A++G+++G+ Sbjct: 699 KFAEAMLGRKVGE 711 >gi|300770814|ref|ZP_07080692.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33861] gi|300762371|gb|EFK59189.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33861] Length = 79 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 43/64 (67%) Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151 V + K +G + YQ+V + EAD++SG +S+ SPIA+ L+GK GD ++ P G+ +E Sbjct: 14 VRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGLLGKSKGDTATIEVPAGKIEFE 73 Query: 152 ILQV 155 I+++ Sbjct: 74 IMEI 77 >gi|86742583|ref|YP_482983.1| GreA/GreB family elongation factor [Frankia sp. CcI3] gi|86569445|gb|ABD13254.1| GreA/GreB family elongation factor [Frankia sp. CcI3] Length = 160 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A+V + +G+ G V + + + + I ++ + Sbjct: 61 ARIRQLTDLLRDAQVGEAPAATGE-AGPGTVVEVRFSGERETEKFLIGSREDHSTPIEVF 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S +SP+ A+ G + G+ +S P G Sbjct: 120 SPASPLGGAVSGHKAGETVSYTLPNG 145 >gi|170750231|ref|YP_001756491.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans JCM 2831] gi|170656753|gb|ACB25808.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans JCM 2831] Length = 157 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 78 ISTMSGDRIAFGATVSLV-EKNSGD--KKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 + GD + FG+TV++V E SG ++ ++IVG+ EAD G +S +P+ARA+ GK Sbjct: 80 VEPKGGDTVQFGSTVTVVREDESGKETRQTFRIVGEDEADPHKGSISYVAPLARAITGKT 139 Query: 135 LGDIISVN 142 +GD++ VN Sbjct: 140 IGDVVEVN 147 >gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1] Length = 162 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQDAYDRLKSELDGLI-ENRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V + S D A G ++L ++ D + ++G +E L +S +S Sbjct: 68 QELLRTAQV-GTAPSSADEAAPGTVLTLKYEDDDDTEKV-LLGSREEGSHGDLQVISPNS 125 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G + GD P G Sbjct: 126 PLGAALLGAKPGDTREYQLPDG 147 >gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC 12478] Length = 164 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEA--DVQSGLVSI 122 +++++ A+V + T SG +A +V V N D + + I QE D + + S Sbjct: 68 QDLLSNAKVGEAPTQSG--VALPGSVVKVYYNGDESDTETFLIATRQEGVNDGKLEVYSP 125 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 126 NSPLGGALIDAKVGETRSYKVPNG 149 >gi|254563199|ref|YP_003070294.1| GreA/GreB family transcription elongation factor [Methylobacterium extorquens DM4] gi|254270477|emb|CAX26477.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens DM4] Length = 154 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 I GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD Sbjct: 81 IEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139 Query: 138 IISVNAPGGEKTYEILQV 155 ++VN + +EI ++ Sbjct: 140 TVTVN----DHEFEIAEI 153 >gi|222086639|ref|YP_002545173.1| transcription elongation factor protein [Agrobacterium radiobacter K84] gi|221724087|gb|ACM27243.1| transcription elongation factor protein [Agrobacterium radiobacter K84] Length = 160 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+A+ L+GK +GD+ SV Sbjct: 93 DIVAFGSTVTF-SRDDGRVQTYRIVGEDEADPKTGSISFVSPVAKLLMGKSVGDVASV-- 149 Query: 144 PGGEKTYEILQV 155 G++ EI+ + Sbjct: 150 --GDQELEIIAI 159 >gi|260576470|ref|ZP_05844460.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2] gi|259021353|gb|EEW24659.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2] Length = 167 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + A +D S+ +AFGA V V G ++ +QI G+ EAD ++ SP Sbjct: 72 LEARLRSAIPVDPSSQPAGEVAFGARVE-VALADGSRQVWQITGEDEADATQNRIAPQSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+G E+GD++ P G E+L + + Sbjct: 131 LARALLGAEVGDLVIWRKPSGPVELEVLAIAY 162 >gi|256833112|ref|YP_003161839.1| transcription elongation factor GreA [Jonesia denitrificans DSM 20603] gi|256686643|gb|ACV09536.1| transcription elongation factor GreA [Jonesia denitrificans DSM 20603] Length = 160 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL R I I++AR GDL EN Y AA+E Q NE R+ EL Sbjct: 9 LTQEAYDRLRAELDHLSGPARQEITNRIAQARDEGDLKENGGYHAAREEQGKNEARIHEL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125 E + I I T D + + +V +GD+ + + + AD + S SP Sbjct: 69 EEKLRN---IRIGTPPDDGVVEPGMI-VVADVAGDEMTFLLGSREIADTTDLDVYSEQSP 124 Query: 126 IARALIGKELGDIISVNAPGG 146 + A+ G+++G+ + AP G Sbjct: 125 LGSAINGRKVGESTAYTAPNG 145 >gi|149378117|ref|ZP_01895837.1| transcription elongation factor GreB [Marinobacter algicola DG893] gi|149357602|gb|EDM46104.1| transcription elongation factor GreB [Marinobacter algicola DG893] Length = 108 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 ++ FGA V+ +E GD+ Y++VG E D+ G +SI SP+ARAL+GK + D + V P Sbjct: 30 KMFFGAWVT-IESEDGDESTYRLVGPDEFDLSRGYLSIDSPMARALLGKRIDDEVGVRTP 88 Query: 145 GG 146 G Sbjct: 89 DG 90 >gi|117929094|ref|YP_873645.1| transcription elongation factor GreA [Acidothermus cellulolyticus 11B] gi|117649557|gb|ABK53659.1| transcription elongation factor GreA [Acidothermus cellulolyticus 11B] Length = 162 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++++ E R I + I ARA GDL EN Y AAKE Q E R+ +L Sbjct: 10 LTQEAYERLTAEYNHLIGPARAEIARKIEAARAEGDLRENGGYHAAKEEQGKMEARIRQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I+ A+V + + D + V V G++ + + +E+ S +SP+ Sbjct: 70 RQILENAKVGEPP--ADDGVVEPGMVVTVRYEDGEELTFLLGSREESAAGIEAFSPNSPL 127 Query: 127 ARALIGKELGDIISVNAPGG 146 AL+GK +GD S P G Sbjct: 128 GSALLGKRVGDSASYTLPTG 147 >gi|255327346|ref|ZP_05368420.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC 25296] gi|255295626|gb|EET74969.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC 25296] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD++ QEL R I+ I++AR GDL EN Y AA++ Q NE R+ +L Sbjct: 9 LTQDAFDRLTQELEHLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAKNEARIKQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120 ++++ A++ + G ++ G ++E + ++G +E A + Sbjct: 69 KHLLETAQIGEAPVDDG-VVSHGM---VIEAEVAGRTLKFLLGSREIEDTLPAGTDLKVF 124 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S SP+ A++G + GD ++ AP G Sbjct: 125 SEKSPLGAAIMGAKQGDEVTYQAPNG 150 >gi|318056471|ref|ZP_07975194.1| transcription elongation factor GreA [Streptomyces sp. SA3_actG] gi|318080242|ref|ZP_07987574.1| transcription elongation factor GreA [Streptomyces sp. SA3_actF] gi|333026761|ref|ZP_08454825.1| putative transcription elongation factor GreA [Streptomyces sp. Tu6071] gi|332746613|gb|EGJ77054.1| putative transcription elongation factor GreA [Streptomyces sp. Tu6071] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A S SP Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + + GK++GD P G+K Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152 >gi|229819572|ref|YP_002881098.1| transcription elongation factor GreA [Beutenbergia cavernae DSM 12333] gi|229565485|gb|ACQ79336.1| transcription elongation factor GreA [Beutenbergia cavernae DSM 12333] Length = 160 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 12/146 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T FD+++ E R I I AR GDL EN Y AA+E Q E R+ +L Sbjct: 8 LTQDAFDRLKAEHDHLTGVGRVEIADKIEAAREEGDLKENGGYHAAREEQAKQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121 E I+ A+V + G + G V+ K +GD+ + ++ GD + DV S Sbjct: 68 EEILRTAQVGEAPADDG-VVEPGMVVTA--KVAGDEMRFLLGSREVAGDTDLDV----YS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SSP+ A++GK++G+ P G+ Sbjct: 121 PSSPLGAAIMGKKVGEKAEYRTPSGK 146 >gi|295838659|ref|ZP_06825592.1| transcription elongation factor GreA [Streptomyces sp. SPB74] gi|197699092|gb|EDY46025.1| transcription elongation factor GreA [Streptomyces sp. SPB74] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A S SP Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + + GK++GD P G+K Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152 >gi|329942321|ref|ZP_08291131.1| transcription elongation factor GreA domain protein [Chlamydophila psittaci Cal10] gi|313847560|emb|CBY16548.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|328815231|gb|EGF85219.1| transcription elongation factor GreA domain protein [Chlamydophila psittaci Cal10] Length = 717 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +A+ ++ K +G S+ G + +Q +W Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715 >gi|163853276|ref|YP_001641319.1| transcription elongation factor GreA/GreB domain-containing protein [Methylobacterium extorquens PA1] gi|163664881|gb|ABY32248.1| transcription elongation factor GreA/GreB domain protein [Methylobacterium extorquens PA1] Length = 154 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD Sbjct: 81 VEAFEGDTVRFGATVTVLREDDT-RQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139 Query: 138 IISVNAPGGEKTYEILQV 155 ++VN + +EI ++ Sbjct: 140 TVTVN----DHEFEIAEI 153 >gi|167949283|ref|ZP_02536357.1| transcription elongation factor GreB [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589334|gb|ABG77176.1| transcription elongation factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 166 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%) Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRM 63 +TS G ++ E + W+++ E ++KA+S A A GD SENAEY KEL+ ++ R+ Sbjct: 39 ITSDGHQRLLAEEQGLWKRRRE---VVKALSAAAAEGDRSENAEYIYRKKELREIDR-RI 94 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L+ I +V++ + ++ F A V+L E G Y+IVG E D Q+ +S+ Sbjct: 95 RYLQKRIPELKVVEQPPSNRQQVFFAAWVTL-EDEQGVTHRYRIVGPDEIDHQADYISMD 153 Query: 124 SPI 126 SP+ Sbjct: 154 SPL 156 >gi|302519408|ref|ZP_07271750.1| transcription elongation factor greA [Streptomyces sp. SPB78] gi|302428303|gb|EFL00119.1| transcription elongation factor greA [Streptomyces sp. SPB78] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A S SP Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + + GK++GD P G+K Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152 >gi|218532092|ref|YP_002422908.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218524395|gb|ACK84980.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 154 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD Sbjct: 81 VEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139 Query: 138 IISVNAPGGEKTYEILQV 155 ++VN + +EI ++ Sbjct: 140 TVTVN----DHEFEIAEI 153 >gi|62184651|ref|YP_219436.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila abortus S26/3] gi|62147718|emb|CAH63462.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 717 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +A+ ++ K +G S+ G + +Q +W Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715 >gi|146343253|ref|YP_001208301.1| transcription elongation factor regulatory protein [Bradyrhizobium sp. ORS278] gi|146196059|emb|CAL80086.1| putative transcription elongation factor (greB) (Transcript cleavage factor greB) [Bradyrhizobium sp. ORS278] Length = 174 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 IAFG+TV+ + G + Y+IVG+ EAD + G +S SP+AR L+GK GD++ V Sbjct: 109 IAFGSTVTF-RRGDGRTQTYRIVGEDEADPKHGTISHVSPVARRLMGKTAGDVVEVTG-- 165 Query: 146 GEKTYEILQV 155 + EIL++ Sbjct: 166 --QELEILRI 173 >gi|192292723|ref|YP_001993328.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris TIE-1] gi|192286472|gb|ACF02853.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] Length = 160 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 S D IAFG+TV+ + G + Y+IVG+ EAD +G +S +P+AR L+GK +GD++ Sbjct: 91 STDEIAFGSTVTF-RRADGRVQTYRIVGEDEADPNAGTISFVAPVARLLMGKSVGDVV 147 >gi|116749867|ref|YP_846554.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] gi|116698931|gb|ABK18119.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] Length = 141 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 51/92 (55%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + +AEV+ + D + + V + + ++G + Y +V EADV+ +S+ +P Sbjct: 40 LEEELRKAEVVAARNIPRDTVTMNSKVRVKDLDTGIETIYHLVFPGEADVKQNRISVLAP 99 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I ALIG +GD+I N P G K I ++L+ Sbjct: 100 IGTALIGYAVGDVIQWNVPAGTKKLRIEEILY 131 >gi|111225557|ref|YP_716351.1| transcription elongation factor GreA [Frankia alni ACN14a] gi|111153089|emb|CAJ64836.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Frankia alni ACN14a] Length = 163 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E R+ +L Sbjct: 10 LTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEARIRQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++ A+V + +G+ G V + + + + I ++ + S +SP+ Sbjct: 70 SDLLRDAQVGESPATTGE-AGPGTVVEVRFPGEQETEKFLIGSREDHSAPIDVFSPASPL 128 Query: 127 ARALIGKELGDIISVNAPGG 146 A+ G + G+ +S P G Sbjct: 129 GGAVNGHKAGETVSYTLPNG 148 >gi|207111191|ref|ZP_03245353.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_CA4C1] Length = 60 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 35/52 (67%) Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +Y IVG E+D GL+S SPIA++LIGK GD +S+ P GE +EIL + Sbjct: 8 SYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDI 59 >gi|269794151|ref|YP_003313606.1| transcription elongation factor [Sanguibacter keddieii DSM 10542] gi|269096336|gb|ACZ20772.1| transcription elongation factor [Sanguibacter keddieii DSM 10542] Length = 160 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D++Q EL E R I I+ AR GDL EN Y AA+E Q NE R+ EL Sbjct: 9 LTQEAHDRLQAELAHLTGEGRTDITDRIAAARDEGDLKENGGYHAAREEQAKNEARIREL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125 + + I T D + V E +GD+ + + + AD + S SP Sbjct: 69 ---TEKLRSVRIGTPPDDGVVEQGMVVTAEV-AGDEMVFLLGSREIADTTDIDVYSEKSP 124 Query: 126 IARALIGKELGDIISVNAPGGE 147 + A++GK++G+ + AP G+ Sbjct: 125 LGAAILGKKIGETAAYTAPNGK 146 >gi|330881018|gb|EGH15167.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + V+ S R+ FGA V +E +GD K ++IVG E Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDE 110 >gi|269957418|ref|YP_003327207.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM 15894] gi|269306099|gb|ACZ31649.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM 15894] Length = 160 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL R I + I+ AR GDL EN Y AA+E Q NE R+ EL Sbjct: 9 LTQEAHDRLKAELENLSGPARTEIAERIAAARDEGDLKENGGYHAAREEQAKNEARIREL 68 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120 + + + T D + G V + + +G+ + +I G + DV Sbjct: 69 TE---KLRTVQVGTPPDDGMVEVGMLVDV--RLAGEPMTFLLGSREIAGTTDVDV----Y 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 S +SP+ A+ G +GD +S AP G E T EI Sbjct: 120 SPTSPLGAAIDGHSIGDTVSYTAPNGKEFTVEI 152 >gi|255596472|ref|XP_002536547.1| Transcription elongation factor greA, putative [Ricinus communis] gi|223519331|gb|EEF25837.1| Transcription elongation factor greA, putative [Ricinus communis] Length = 196 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 11/102 (10%) Query: 49 YQAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99 Y+AA ++++NE R + AEV+ + S + + FG+TV+ + Sbjct: 86 YEAASAIEDINERRRQTAIPLRDARYFAERVRTAEVMP-APASSEVVVFGSTVTY-SRED 143 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 G + Y+IVG+ EAD ++G +S SP+AR L+GK +GDI+++ Sbjct: 144 GRVQKYRIVGEDEADPKAGSISYVSPVARLLMGKTVGDILTL 185 >gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK] gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1] gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK] gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1] Length = 164 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTEEAYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV--EKNSGDKKNYQIVGDQEADVQSG---LVS 121 + ++ A+V + SG IA +V V + + D + + ++G +E V G + S Sbjct: 68 QELLNDAKVGEAPKQSG--IALPGSVVKVYYDDDENDTETF-LIGTREQGVNDGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 125 PNSPLGGALIDAKVGESRSYTVPSG 149 >gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC BAA-974] gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC BAA-974] Length = 163 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP + I+E R GDL EN Y AA+E Q E R+ +L++++ A+V T SG + Sbjct: 27 RPALAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQDLLATAKVGAAPTQSG--V 84 Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141 A +V V + GDK + + ++ +E QSG + S +SP+ AL+ ++G+ Sbjct: 85 ALPGSVVTVYYD-GDKNDTETFLIATREEGAQSGKLEVYSPNSPLGGALLDAKVGETREY 143 Query: 142 NAPGG 146 P G Sbjct: 144 TVPNG 148 >gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4] gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4] Length = 165 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I I+E R GDL ENA Y AA+E Q E R+ +++++ A+V + T SG + Sbjct: 29 RPVIAAEINERREEGDLKENAGYHAAREQQGQEEARIRTIDDLLANAQVGETPTESGVAL 88 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVSISSPIARALIGKELGDIISV 141 G+ V + D K ++G + + D++ + S SP+ +A++G + G+ Sbjct: 89 -IGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLE--IYSPDSPLGKAVLGAKNGETREY 145 Query: 142 NAPGGEK 148 AP G+K Sbjct: 146 TAPNGKK 152 >gi|294631104|ref|ZP_06709664.1| transcription elongation factor GreA [Streptomyces sp. e14] gi|292834437|gb|EFF92786.1| transcription elongation factor GreA [Streptomyces sp. e14] Length = 166 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + + +A G V++ + + D + + + A S SP Sbjct: 71 TQLLENAKVGEAPASTDGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQSP 130 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + +IG ++G+ P G+K Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153 >gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Rv] gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis CDC1551] gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis AF2122/97] gi|121637009|ref|YP_977232.1| transcription elongation factor GreA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660865|ref|YP_001282388.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|148822289|ref|YP_001287043.1| transcription elongation factor GreA [Mycobacterium tuberculosis F11] gi|167967359|ref|ZP_02549636.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|215402903|ref|ZP_03415084.1| transcription elongation factor GreA [Mycobacterium tuberculosis 02_1987] gi|215410693|ref|ZP_03419501.1| transcription elongation factor GreA [Mycobacterium tuberculosis 94_M4241A] gi|215426369|ref|ZP_03424288.1| transcription elongation factor GreA [Mycobacterium tuberculosis T92] gi|215429946|ref|ZP_03427865.1| transcription elongation factor GreA [Mycobacterium tuberculosis EAS054] gi|215445235|ref|ZP_03431987.1| transcription elongation factor GreA [Mycobacterium tuberculosis T85] gi|218752760|ref|ZP_03531556.1| transcription elongation factor GreA [Mycobacterium tuberculosis GM 1503] gi|219556957|ref|ZP_03536033.1| transcription elongation factor GreA [Mycobacterium tuberculosis T17] gi|224989482|ref|YP_002644169.1| putative transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253799884|ref|YP_003032885.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 1435] gi|254363991|ref|ZP_04980037.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis str. Haarlem] gi|254550071|ref|ZP_05140518.1| transcription elongation factor GreA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186001|ref|ZP_05763475.1| transcription elongation factor GreA [Mycobacterium tuberculosis CPHL_A] gi|260200115|ref|ZP_05767606.1| transcription elongation factor GreA [Mycobacterium tuberculosis T46] gi|260204309|ref|ZP_05771800.1| transcription elongation factor GreA [Mycobacterium tuberculosis K85] gi|289442507|ref|ZP_06432251.1| transcription elongation factor greA [Mycobacterium tuberculosis T46] gi|289446666|ref|ZP_06436410.1| transcription elongation factor greA [Mycobacterium tuberculosis CPHL_A] gi|289555137|ref|ZP_06444347.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 605] gi|289569068|ref|ZP_06449295.1| transcription elongation factor greA [Mycobacterium tuberculosis T17] gi|289573723|ref|ZP_06453950.1| transcription elongation factor greA [Mycobacterium tuberculosis K85] gi|289744820|ref|ZP_06504198.1| transcription elongation factor greA [Mycobacterium tuberculosis 02_1987] gi|289749613|ref|ZP_06508991.1| transcription elongation factor greA [Mycobacterium tuberculosis T92] gi|289753143|ref|ZP_06512521.1| transcription elongation factor greA [Mycobacterium tuberculosis EAS054] gi|289757165|ref|ZP_06516543.1| transcription elongation factor greA [Mycobacterium tuberculosis T85] gi|289761218|ref|ZP_06520596.1| transcription elongation factor greA (transcript cleavage factor greA) [Mycobacterium tuberculosis GM 1503] gi|294993263|ref|ZP_06798954.1| transcription elongation factor GreA [Mycobacterium tuberculosis 210] gi|297633615|ref|ZP_06951395.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN 4207] gi|297730600|ref|ZP_06959718.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN R506] gi|298524578|ref|ZP_07011987.1| transcription elongation factor greA [Mycobacterium tuberculosis 94_M4241A] gi|306775228|ref|ZP_07413565.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu001] gi|306781857|ref|ZP_07420194.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu002] gi|306783784|ref|ZP_07422106.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu003] gi|306788143|ref|ZP_07426465.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu004] gi|306792476|ref|ZP_07430778.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu005] gi|306796872|ref|ZP_07435174.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu006] gi|306802759|ref|ZP_07439427.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu008] gi|306806942|ref|ZP_07443610.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu007] gi|306967143|ref|ZP_07479804.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu009] gi|306971331|ref|ZP_07483992.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu010] gi|307079059|ref|ZP_07488229.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu011] gi|307083622|ref|ZP_07492735.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu012] gi|313657927|ref|ZP_07814807.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN V2475] gi|54037218|sp|P64280|GREA_MYCBO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041328|sp|P64279|GREA_MYCTU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200676|sp|A1KHL8|GREA_MYCBP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200679|sp|A5U1C6|GREA_MYCTA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799563|sp|C1AM72|GREA_MYCBT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2896717|emb|CAA17196.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage factor greA) [Mycobacterium tuberculosis H37Rv] gi|13880692|gb|AAK45367.1| transcription elongation factor GreA [Mycobacterium tuberculosis CDC1551] gi|31617859|emb|CAD93969.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage factor greA) [Mycobacterium bovis AF2122/97] gi|121492656|emb|CAL71125.1| Probable transcription elongation factor greA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149505|gb|EBA41550.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis str. Haarlem] gi|148505017|gb|ABQ72826.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|148720816|gb|ABR05441.1| transcription elongation factor greA [Mycobacterium tuberculosis F11] gi|224772595|dbj|BAH25401.1| putative transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253321387|gb|ACT25990.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 1435] gi|289415426|gb|EFD12666.1| transcription elongation factor greA [Mycobacterium tuberculosis T46] gi|289419624|gb|EFD16825.1| transcription elongation factor greA [Mycobacterium tuberculosis CPHL_A] gi|289439769|gb|EFD22262.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 605] gi|289538154|gb|EFD42732.1| transcription elongation factor greA [Mycobacterium tuberculosis K85] gi|289542822|gb|EFD46470.1| transcription elongation factor greA [Mycobacterium tuberculosis T17] gi|289685348|gb|EFD52836.1| transcription elongation factor greA [Mycobacterium tuberculosis 02_1987] gi|289690200|gb|EFD57629.1| transcription elongation factor greA [Mycobacterium tuberculosis T92] gi|289693730|gb|EFD61159.1| transcription elongation factor greA [Mycobacterium tuberculosis EAS054] gi|289708724|gb|EFD72740.1| transcription elongation factor greA (transcript cleavage factor greA) [Mycobacterium tuberculosis GM 1503] gi|289712729|gb|EFD76741.1| transcription elongation factor greA [Mycobacterium tuberculosis T85] gi|298494372|gb|EFI29666.1| transcription elongation factor greA [Mycobacterium tuberculosis 94_M4241A] gi|308216254|gb|EFO75653.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu001] gi|308325405|gb|EFP14256.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu002] gi|308331446|gb|EFP20297.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu003] gi|308335256|gb|EFP24107.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu004] gi|308339062|gb|EFP27913.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu005] gi|308342739|gb|EFP31590.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu006] gi|308346614|gb|EFP35465.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu007] gi|308350538|gb|EFP39389.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu008] gi|308355188|gb|EFP44039.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu009] gi|308359143|gb|EFP47994.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu010] gi|308363058|gb|EFP51909.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu011] gi|308366711|gb|EFP55562.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu012] gi|323720471|gb|EGB29557.1| transcription elongation factor greA [Mycobacterium tuberculosis CDC1551A] gi|326904695|gb|EGE51628.1| transcription elongation factor greA [Mycobacterium tuberculosis W-148] gi|328459629|gb|AEB05052.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 4207] Length = 164 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 +++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S Sbjct: 68 QDLLSNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDSETFLIATRQEGVSDGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149 >gi|269219222|ref|ZP_06163076.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211369|gb|EEZ77709.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 848 str. F0332] Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 84/154 (54%), Gaps = 12/154 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ + +++++ EL R I + I AR GDL EN YQAA+E Q+ EGR+AEL Sbjct: 10 LSPESYERLRAELEEMTTVRRAEIARKIEAARNEGDLRENGGYQAAREEQSKLEGRIAEL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----DVQSGLVSI 122 +++ A V + + A V + K +G+++ + ++G +EA D++ + Sbjct: 70 THLLENATVSEPPAAT----EVQAGVIVTAKIAGEEERF-LIGSREASDHLDIE--IYPE 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 S+P+ +A++G + G+ P G K + EI+++ Sbjct: 123 SAPLGKAILGLKEGESTKFATPTGRKISVEIVKI 156 >gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii PYR-1] gi|166200681|sp|A1TE43|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii PYR-1] Length = 164 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTEESYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ-IVGDQEADVQSG---LVSI 122 + ++ A+V + SG IA +V V + +K ++G +E V G + S Sbjct: 68 QELLNNAKVGEAPKQSG--IALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGKLEVYSP 125 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 126 NSPLGGALIDAKVGESRSYTVPSG 149 >gi|15834629|ref|NP_296388.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Nigg] gi|270284795|ref|ZP_06194189.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Nigg] gi|270288825|ref|ZP_06195127.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Weiss] gi|301336175|ref|ZP_07224377.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia muridarum MopnTet14] gi|14194799|sp|Q9PLU1|GREA_CHLMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7190045|gb|AAF38898.1| transcription elongation protein, GreA/GreB family [Chlamydia muridarum Nigg] Length = 714 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+ F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 567 TSESFTRMKAKLQSLIGKEMVDNAKEIEDARALGDLRENSEYKFALERRARLQEEIRVLS 626 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + + + G V L E G++ Y I+G +A+ + ++S+ S +A Sbjct: 627 EEINRAKILTKDAVFTNSVGVGCKVVL-EDEQGEEDCYTILGPWDANPEEKILSLKSKLA 685 Query: 128 RALIGKELGD 137 + ++GK +G+ Sbjct: 686 QEMVGKTVGE 695 >gi|325283338|ref|YP_004255879.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] gi|324315147|gb|ADY26262.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] Length = 165 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 7/159 (4%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +I +T +G++++++ L ++QE + + E SE+ + AK + E R+ Sbjct: 9 QIKLTKEGYERLEKAL-AQEQERLTEATRIVQEQMENSTDSEDTGLEDAKREKRQVEARI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----L 119 ELE+ + RA VI+ G + GATV L + + + ++V EA V+ G Sbjct: 68 EELEDTLARATVIEGGADDG-AVNLGATVVLSNETAKKEMTVKVVSAAEASVRGGDKTPR 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +S SP+ R L+G+ GD VN GG++ Y++ V + Sbjct: 127 ISDDSPVGRELMGRREGDAFVVNLEGGKQVKYKVKSVSY 165 >gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp. avium ATCC 25291] gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10] gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium] Length = 164 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 ++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S Sbjct: 68 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149 >gi|288917982|ref|ZP_06412341.1| transcription elongation factor GreA [Frankia sp. EUN1f] gi|288350637|gb|EFC84855.1| transcription elongation factor GreA [Frankia sp. EUN1f] Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 66/146 (45%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELEYLTGTWRTEIATKIEAAREEGDLRENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A V + + G V + + + + I ++ + Sbjct: 61 ARIRQLMDLLRDARVGETAPAVSGEAGPGMIVEIRFPGEKETEKFLIGSREDHSTSIEVF 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S +SP+ A+ G + G+ ++ P G Sbjct: 121 SPASPLGGAVTGHKAGETVNYTLPNG 146 >gi|84386347|ref|ZP_00989375.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378771|gb|EAP95626.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 107 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGL 119 R+ L + ++D S ++ FGA V +E + G+ K ++IVG +E D + G Sbjct: 8 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEMKKFRIVGPEEIYGDAK-GY 65 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +SI SP+ARAL+ KE+ D +V P G+K + I Sbjct: 66 ISIDSPMARALLKKEVDDEFTVTTPEGDKEWFI 98 >gi|90423091|ref|YP_531461.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisB18] gi|90105105|gb|ABD87142.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 160 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 11/103 (10%) Query: 50 QAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 +AA+ + ++NE R E L + AE++ + + S D +AFG+TV+ + G Sbjct: 51 EAAQAIADVNERRRQEAGPLRDARYLAARVRTAELMPVPS-SSDIVAFGSTVTF-RRGDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 ++++IVG+ EAD ++G +S SP+AR L+ K +GD++ A Sbjct: 109 RVQSFRIVGEDEADPKAGSISFVSPVARLLLRKSVGDVVGSGA 151 >gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104] gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104] Length = 159 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 4 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 62 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 ++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S Sbjct: 63 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 120 PNSPLGGALIDAKVGETRSYTVPNG 144 >gi|86358113|ref|YP_470005.1| transcription elongation factor regulatory protein [Rhizobium etli CFN 42] gi|86282215|gb|ABC91278.1| transcription elongation factor protein [Rhizobium etli CFN 42] Length = 160 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 11/102 (10%) Query: 47 AEYQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEK 97 A Y A ++++NE R + +L + R A++I T S D +AFG TV+ + Sbjct: 48 AAYDTAIAIEDVNERRRQAANPLRDLRYLSARLRTAQLIPDPT-SADVVAFGLTVTFT-R 105 Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + G + Y++VG+ EAD ++G +S SP+A+ L+GK +GD++ Sbjct: 106 DDGRVQTYRLVGEDEADPKAGSISYVSPVAQLLMGKAVGDVV 147 >gi|39936890|ref|NP_949166.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris CGA009] gi|39650747|emb|CAE29270.1| putative transcription elongation factor greA homologue [Rhodopseudomonas palustris CGA009] Length = 176 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 D IAFG+TV+ + G + Y+IVG+ EAD +G +S +P+AR L+GK +GD++ Sbjct: 109 DEIAFGSTVTF-RRADGRVQTYRIVGEDEADPNAGTISFVAPVARLLMGKSVGDVV 163 >gi|159036522|ref|YP_001535775.1| transcription elongation factor GreA [Salinispora arenicola CNS-205] gi|157915357|gb|ABV96784.1| transcription elongation factor GreA [Salinispora arenicola CNS-205] Length = 165 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ + +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L Sbjct: 12 LSQEAYDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 + ++ A+V + T D IA G V++ + D ++G +E + L S S Sbjct: 71 KELLRTAQVGEAPT--ADTIAPGMVVTIYFDDDKDDTERFLLGSREIASTTDLTVYSPES 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 I +A++G G + AP G Sbjct: 129 AIGQAILGCRSGQTCTYTAPSG 150 >gi|240140684|ref|YP_002965164.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens AM1] gi|240010661|gb|ACS41887.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens AM1] Length = 154 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A++L GK +GD Sbjct: 81 VEAFEGDTVRFGATVTVLREDDT-RQTFRIVGEDEADPAAGSISYVAPLAQSLTGKGVGD 139 Query: 138 IISVNAPGGEKTYEILQV 155 ++VN + +EI ++ Sbjct: 140 TVTVN----DHEFEIAEI 153 >gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99] gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M] gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99] gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M] Length = 164 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-HLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEA--DVQSGLVSI 122 ++++ A+V + SG IA +V V N D + + I QE D + + S Sbjct: 68 QDLLNNAKVGEAPKQSG--IALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGKLEVYSP 125 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 126 NSPLGGALIDAKVGETRSYTVPNG 149 >gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola DSM 20162] gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola DSM 20162] Length = 164 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I I+E R GDL EN Y AA+E Q E R+ +L+ ++ A+V + T SG + Sbjct: 28 RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQELLNNAKVGEAPTQSG--V 85 Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141 A +V V + GD+K+ + ++ +E Q G + S +SP+ ALI ++G+ Sbjct: 86 ALPGSVVKVYYD-GDEKDTETFLIATREEGAQDGELEVYSPNSPLGAALIDAKVGESREY 144 Query: 142 NAPGG 146 P G Sbjct: 145 TIPSG 149 >gi|297170470|gb|ADI21501.1| transcription elongation factor [uncultured myxobacterium HF0070_11L13] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +++D S ++ FGA V +E + G ++IVG E + +SI SP+ARAL+ K Sbjct: 6 KIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKK 64 Query: 134 ELGDIISVNAPGGEKTYEI 152 E+GD+ VN P GE ++ + Sbjct: 65 EVGDLAVVNTPAGEASWYV 83 >gi|298206901|ref|YP_003715080.1| transcription elongation factor, putative [Croceibacter atlanticus HTCC2559] gi|83849535|gb|EAP87403.1| transcription elongation factor, putative [Croceibacter atlanticus HTCC2559] Length = 166 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +M +L+ + A ++D D + FGATV L K S + +QIVG EA+++ + Sbjct: 70 AKMNQLKERLASARLLDPKDQPKDEVRFGATVKLKNKTSNLVQEFQIVGVDEANIKKQKI 129 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ A+IG ++ + +S N G + EIL + + Sbjct: 130 AFVAPLVSAIIGAKVNENVSFNLGGEVRELEILSITY 166 >gi|118581250|ref|YP_902500.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] gi|118503960|gb|ABL00443.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 5/105 (4%) Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 +L E A+ + +++ +N+ ELE + RA+V+ + D I + V L + +SG+ Sbjct: 22 ELIEGAKARVSRDSRNI-----VELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGE 76 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + Y +V +A+++SG +S+ +P+ A+IG GD IS PGG Sbjct: 77 ELVYTLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGG 121 >gi|297157679|gb|ADI07391.1| transcription elongation factor GreA [Streptomyces bingchenggensis BCW-1] Length = 165 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + +G +A G V++ + + D + + + A S SP Sbjct: 71 TQLLQHAKVGEAPADTG-VVAPGMVVTIAFDGDPDDSLTFLLASREYASSDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK++G+ S P G Sbjct: 130 LGSGVNGKKVGEDASYELPNG 150 >gi|257069437|ref|YP_003155692.1| transcription elongation factor GreA [Brachybacterium faecium DSM 4810] gi|256560255|gb|ACU86102.1| transcription elongation factor GreA [Brachybacterium faecium DSM 4810] Length = 163 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 10/150 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ +EL + R I + I+ AR GDL EN Y AA+E Q E R+A+L Sbjct: 10 LTQDAYDRLAKELEELEGPGRTEIAERIAAARDEGDLKENGGYHAAREEQGKMEARIADL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI----VGDQEADVQSGLVSI 122 + ++ A V + G + +V +G ++ + + + D + D++ + S Sbjct: 70 QRLLKNAVVGEAPKDDG---VVEPGMVVVISMAGKERTFLLGNREIADGDEDLE--VYSS 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ A+ G +GD + AP G K++ I Sbjct: 125 ESPLGSAIHGSRVGDTVDYTAPNG-KSFPI 153 >gi|302536479|ref|ZP_07288821.1| transcription elongation factor greA [Streptomyces sp. C] gi|302445374|gb|EFL17190.1| transcription elongation factor greA [Streptomyces sp. C] Length = 165 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQAAYDQLKAELDYLSGPARTEIAMKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V SG+ +A G V++ + + D + + + A S SP Sbjct: 71 TQLLENAKVGTAPAASGE-VAPGTLVTIAFDGDEDDTLEFLLASREYASDDFETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155 + + GK++G+ P G+K T IL V Sbjct: 130 LGAGVNGKKVGEDAQYELPNGKKATVRILAV 160 >gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] gi|166200678|sp|A0R2X1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] Length = 164 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQEAFDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124 + ++ A+V + SG + + + D + + I QE +D + + S +S Sbjct: 68 QELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGKLEVYSPNS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+ ++G+ + P G Sbjct: 128 PLGGALLDAKVGESRTYTVPSG 149 >gi|94985913|ref|YP_605277.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] gi|94556194|gb|ABF46108.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] Length = 158 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 10/158 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57 M ++IP+T++G+ ++Q+ L ++ER R+ A + A D + E+ +QAA+ Sbjct: 1 MAEEIPMTAEGYRRLQETL----EKERQRLEDATTSMAATLDDAMDLEDRSFQAAQYDLP 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQ 116 E R+ ELE+++ RA +++ +A G+ V L ++ + Q+V E D + Sbjct: 57 TMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRDEQHDRELRVQLVSAVEVDALA 116 Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEI 152 G +S SP+ +AL+G+ G+ V+ Y + Sbjct: 117 EGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARYTV 154 >gi|194246641|ref|YP_002004280.1| Transcription elongation factor [Candidatus Phytoplasma mali] gi|193806998|emb|CAP18433.1| Transcription elongation factor [Candidatus Phytoplasma mali] Length = 162 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++L + R +K + EAR GDLSENA+Y AA+ Q L E + ++ Sbjct: 10 LTKSGVLELKEQLHHLTEIRRIENLKILKEAREQGDLSENADYDAARNEQALIENEILKI 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +NI+ + ++I I ++ +EKN KK++ +VG E D +SI P+ Sbjct: 70 KNILKKIKIIKSLKNKEVNIGKLVELNFLEKNI--KKSFYLVGILETDPSLNKISIDCPL 127 Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155 + + G ++GD I++ + G+ EIL+V Sbjct: 128 GKGIRGHQVGDKITIQSETGKNFQVEILKV 157 >gi|145593481|ref|YP_001157778.1| transcription elongation factor GreA [Salinispora tropica CNB-440] gi|145302818|gb|ABP53400.1| transcription elongation factor GreA [Salinispora tropica CNB-440] Length = 165 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ + D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L Sbjct: 12 LSQEAHDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRIVYL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SISS 124 + ++ A+V + T D +A G V++ + D ++G +E + L S S Sbjct: 71 KELLRTAQVGEAPT--ADTVAPGMVVTIYFDDDKDDTERFLLGSREISSTTDLTVYSPES 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 I +A++G G + AP G Sbjct: 129 AIGQAILGCRPGQTCTYTAPSG 150 >gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM 44985] gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM 44985] Length = 163 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL RP + I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 8 LTQEAHDRLKAELD-SLIANRPVLAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 ++++ A+V T SG +A +V V + GDK + + ++ +E Q G + S Sbjct: 67 QDLLATAKVGAAPTQSG--VALPGSVVTVYYD-GDKSDTETFLIATREEGAQGGKLEVYS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ AL+ ++G+ P G Sbjct: 124 PNSPLGGALLDAKVGETREYTVPNG 148 >gi|239929251|ref|ZP_04686204.1| transcription elongation factor GreA [Streptomyces ghanaensis ATCC 14672] gi|291437589|ref|ZP_06576979.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC 14672] gi|291340484|gb|EFE67440.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC 14672] Length = 165 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G +A G V++ + + D + + + A + S SP Sbjct: 71 TQLLENAKVGEAPAADGT-VAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + +IG+++G+ P G Sbjct: 130 LGTGVIGRKVGENAEYELPNG 150 >gi|329935321|ref|ZP_08285287.1| transcription elongation factor GreA [Streptomyces griseoaurantiacus M045] gi|329305144|gb|EGG49003.1| transcription elongation factor GreA [Streptomyces griseoaurantiacus M045] Length = 166 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ +A+V + + G V++ + + D ++ + + A S SP Sbjct: 71 TQLLEQAQVGEAQASEDGAVGPGMVVTIAFDGDEDDTLSFLLASREYASSDIETYSPQSP 130 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + +IG ++G+ P G+K Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153 >gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] Length = 163 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+++ EL + RP I I+ R GDL EN Y AA+E Q E R+ +L Sbjct: 11 LTQEAFDRLKNELD-QLIANRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V T + +A TV V + D + ++G +E L +S +S Sbjct: 70 QELLRTAQVGTAPTSTD--VASPGTVLTVRYDDDDTEQV-LLGSREEGSHGDLQVISPNS 126 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G ++G+ + P G Sbjct: 127 PLGAALLGAKVGETREYSLPDG 148 >gi|330444026|ref|YP_004377012.1| transcription elongation factor greA [Chlamydophila pecorum E58] gi|328807136|gb|AEB41309.1| Transcription elongation factor greA [Chlamydophila pecorum E58] Length = 721 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 77/139 (55%), Gaps = 2/139 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D VTS+ F +++++L+ +E + I +ARA GDL EN+EY+ A E + + Sbjct: 569 DVFWVTSQSFSRMKEKLQSLVGKEMVDNAREIEDARALGDLRENSEYKFALERRARLQEE 628 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I +A+++ + + ++ G V+L +++ Y ++G +AD + ++S+ Sbjct: 629 IRVLSEEINKAKILTKADVHTHKVGVGCRVTL--EDAQGSIEYTLLGSWDADSEKNILSL 686 Query: 123 SSPIARALIGKELGDIISV 141 S +A+ L+GK + + + + Sbjct: 687 QSKLAQMLLGKNIDERVQL 705 >gi|328950624|ref|YP_004367959.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis DSM 14884] gi|328450948|gb|AEB11849.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis DSM 14884] Length = 156 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 8/159 (5%) Query: 1 MVDKIPVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M +I +T G+++++ +L +++ E RI++ E+ + D ++ A +E + Sbjct: 1 MAREIKLTKAGYERLKAQLEQEYQRLAEATRILQEQMES--FEDYEDSGLEDAKREKARI 58 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ LE+ ++RA +++ + G +A G+ + L + SG+ QIV EA V Sbjct: 59 -EARIDSLEDTLSRAVILE-DSQGGQVVALGSRLVLQDAESGEGYEIQIVAPAEASVLEE 116 Query: 119 LVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + IS SP+ AL+G+ G+ + V P G + Y I+ V Sbjct: 117 PLKISDESPVGSALLGRREGESVRVETPRGIREYRIISV 155 >gi|159185796|ref|NP_357050.2| transcription elongation factor regulatory protein [Agrobacterium tumefaciens str. C58] gi|159140930|gb|AAK89835.2| transcription elongation factor [Agrobacterium tumefaciens str. C58] Length = 160 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 9/100 (9%) Query: 50 QAAKELQNLNEGR---MAELENIITRAEVIDISTMSGDR-----IAFGATVSLVEKNSGD 101 +AA ++++NE R + L ++ AE + + + D +AFG+ V+ ++ G Sbjct: 51 EAANAIEDINERRRLSASPLRDMRYFAERVRTAQLMPDPQADGVVAFGSLVTF-SRDDGR 109 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + ++IVG+ EAD +G +S SP+AR L+GK +GD++S+ Sbjct: 110 TQRFRIVGEDEADPAAGTMSYVSPVARVLMGKTIGDVVSL 149 >gi|320334564|ref|YP_004171275.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319755853|gb|ADV67610.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 160 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57 M KI +T +G++++++ L + ER R +A + A D + E+ QAA+ Sbjct: 1 MTQKIQMTREGYERLERAL----EHERQRRDEATASMAAVLDDAIDLEDRSLQAAQHDFA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-Q 116 + R+ ELE+ + RAE++D + + G+ V L + Q+V E + Sbjct: 57 GMDARIMELEDALVRAEIVDTVDDADGHVRIGSVVDLHDNTQNRDVRVQLVSAVETTLLD 116 Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G+ +S SP+ +AL+G++ GD +V+ +K Y + V Sbjct: 117 EGITHVSDDSPVGKALLGRQRGDTFTVDLGDRQKDYTVQNV 157 >gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare ATCC 13950] gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 164 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121 ++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S Sbjct: 68 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 125 PNSPLGGALIDAKVGETRSYVVPNG 149 >gi|319441736|ref|ZP_07990892.1| transcription elongation factor GreA [Corynebacterium variabile DSM 44702] Length = 173 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + RP + I+E R GDL EN Y AA+E Q E R+ L Sbjct: 9 LTQESYDRLNDELAALKGN-RPALAAEINERREEGDLKENGGYHAAREQQGQEEARIVYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121 E ++ A + + SG + G+ V + D K ++G + D+++ S Sbjct: 68 EELLDNATIGEAPAESGVAL-VGSVVHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148 +P+ AL+G + G+ AP G K Sbjct: 125 TDAPLGAALVGAKEGETREYAAPNGSK 151 >gi|289643503|ref|ZP_06475621.1| transcription elongation factor GreA [Frankia symbiont of Datisca glomerata] gi|289506687|gb|EFD27668.1| transcription elongation factor GreA [Frankia symbiont of Datisca glomerata] Length = 160 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D++++EL R I I AR GDL EN Y AAKE Q E Sbjct: 1 MSQQTWLTQEAYDRLREELDHLTGTGRVEIANKIEAAREEGDLKENGGYHAAKEEQGKLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GL 119 R+ +L +++ A V G A TV V D+ ++G +E S + Sbjct: 61 SRIRQLTDLLRDARVGQAPQFDG--AAGPGTVVEVRFPGDDETERFLIGSREDHSTSLEV 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 S SP+ A+ G GD ++ P G Sbjct: 119 YSAQSPLGGAVSGHRAGDTVTYTLPNG 145 >gi|302553811|ref|ZP_07306153.1| transcription elongation factor greA [Streptomyces viridochromogenes DSM 40736] gi|302471429|gb|EFL34522.1| transcription elongation factor greA [Streptomyces viridochromogenes DSM 40736] Length = 165 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKAELEYLTGPARAEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ A+V + G +A G V++ D ++ +E AD+++ S Sbjct: 71 TQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASADIET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ +IG ++G+ P G+K Sbjct: 128 SPLGAGVIGHKVGEDAEYELPNGKK 152 >gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris AB-18-032] gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris AB-18-032] Length = 165 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +D+++ EL RP I I+ R GDL EN Y AA+E Q EGR+ L Sbjct: 12 LSQDAYDRLKAELD-ELIANRPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 + ++ A+V + T D +A G V++ + D ++G +E + L S S Sbjct: 71 KELLRTAQVGEAPT--ADAVAPGMVVTIYFDDDADDTETFLLGSREIASTTDLTVYSPES 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 + +A++G + G + AP G Sbjct: 129 ALGKAILGGKAGQTCTYTAPSG 150 >gi|213162024|ref|ZP_03347734.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 47 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 35/47 (74%) Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 EAD + L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 1 EADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 47 >gi|320335054|ref|YP_004171765.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319756343|gb|ADV68100.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 160 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQ--EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M I +T +GF+++Q+ L ++ EE RI++ EA A +E+ + AK + Sbjct: 1 MARDIKLTREGFERLQRTLDHERERLEEATRILQEQMEASAD---NEDTGLEDAKREKMS 57 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +LE+ + RA +I+ + +A GA V L + + QIV EA V G Sbjct: 58 IEARIDDLEDTLARATLIEDHSEDAGHVALGAIVVLHNEATKKDMRVQIVSAPEASVLGG 117 Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +S SP+ L+G++ G+ VN G++ Y++ V + Sbjct: 118 SLPKISDDSPVGTQLLGRKTGESFVVNLENGKQVKYKVKNVEY 160 >gi|315127999|ref|YP_004070002.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] gi|315016513|gb|ADT69851.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] Length = 96 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 M L I +++D S + ++ FGA V +E +G+ K ++IVG E ++ +SI Sbjct: 1 MRYLRKRIPDLKIVDYSPVQDGKVFFGAWVE-IENEAGECKKFRIVGPDEIYDRNDYISI 59 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ K++ D V P G K + + Sbjct: 60 DSPMARALLKKQVDDDFEVMTPQGAKQWYV 89 >gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S] gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707] gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S] gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707] Length = 164 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124 + ++ A+V + T SG + + + D + + I +E D + + S +S Sbjct: 68 QELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNKLEVYSPNS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+ ++G+ P G Sbjct: 128 PLGGALLNAKVGETREYTLPNG 149 >gi|332557443|ref|ZP_08411765.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N] gi|332275155|gb|EGJ20470.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N] Length = 164 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE I A ++D +T D +AFG V+ VE +G + ++I G+ EA + ++ +P Sbjct: 72 LEARIASAILVDPATQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+G LG+ + P GE T + Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157 >gi|218673855|ref|ZP_03523524.1| transcription elongation factor regulatory protein [Rhizobium etli GR56] Length = 160 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 9/101 (8%) Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100 Y AA ++++NE R + +L + R + S D +AFG+TV+ ++ G Sbjct: 50 YDAASIIEDVNERRRQTANPLRDLRYLAARLRTAQLMPDPTSADVVAFGSTVTF-RRDDG 108 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + Y+IVG+ EA+ ++ +S SP+AR L+GK GD + V Sbjct: 109 RVQTYRIVGEDEAEPKAASISYLSPVARLLMGKAAGDAVEV 149 >gi|218662438|ref|ZP_03518368.1| transcription elongation factor regulatory protein [Rhizobium etli IE4771] Length = 160 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 11/100 (11%) Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99 Y A ++++NE R + +L + R A+++ T S + +AFG TV+ ++ Sbjct: 50 YDATNTIEDVNERRRQAANPLRDLRYLAARLRTAQLMPYPT-SVNVVAFGNTVTF-RRDD 107 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD + Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDAV 147 >gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4] gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4] Length = 163 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ L Sbjct: 9 LTQDAYDRLKHELD-EMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRHL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V + G A V V+ + D++ ++ +E + L S S Sbjct: 68 QELLRNAKVGEAPDDDG--TAGPGKVLTVKYDGDDEEEKFLLATREEGAEGALDVYSPES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ +AL+G + G+ P G KT ++ V Sbjct: 126 PLGKALLGAKEGESREYELPNG-KTMKVTLV 155 >gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC 43734] gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC 43734] Length = 173 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ L Sbjct: 9 LTQESYDRLNTELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121 E ++ A + + SG + G+ + + D K ++G + D+++ S Sbjct: 68 EELLDSATIGEAPQESGVAL-VGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 +P+ A++G ++G+ P G+ Sbjct: 125 TDAPLGAAIVGAKVGETREYQTPAGD 150 >gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium K411] gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411] Length = 173 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ L Sbjct: 9 LTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121 E ++ A + + SG + G+ + + D K ++G + D+++ S Sbjct: 68 EELLDSATIGEAPQESGVAL-VGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 +P+ A++G ++G+ P G+ Sbjct: 125 TDAPLGAAIVGAKVGETREYQTPAGD 150 >gi|89897729|ref|YP_521216.1| hypothetical protein DSY4983 [Desulfitobacterium hafniense Y51] gi|219670878|ref|YP_002461313.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense DCB-2] gi|89337177|dbj|BAE86772.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541138|gb|ACL22877.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense DCB-2] Length = 138 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 71/132 (53%), Gaps = 14/132 (10%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R R++K I++ R +G ++N +Y + +LE+ + A+V+ + G+ Sbjct: 11 DRERLLKLINKEREFGS-AKNKDY-------------LKDLEHELNGADVVPSEKIPGNA 56 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 I + + L + +G++ Y +V ++AD+ +SI +P+ A++G GDII PG Sbjct: 57 ITMNSRILLKDLETGEETVYTLVYPEDADLLEDKISILAPVGTAILGYLEGDIIDWKVPG 116 Query: 146 GEKTYEILQVLW 157 G +++ ++L+ Sbjct: 117 GVVRFKVEKILY 128 >gi|21223338|ref|NP_629117.1| transcription elongation factor GreA [Streptomyces coelicolor A3(2)] gi|256785558|ref|ZP_05523989.1| transcription elongation factor GreA [Streptomyces lividans TK24] gi|289769454|ref|ZP_06528832.1| transcription elongation factor greA [Streptomyces lividans TK24] gi|25453008|sp|Q9ADK2|GREA_STRCO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|20520966|emb|CAD30950.1| putative transcription elongation factor [Streptomyces coelicolor A3(2)] gi|289699653|gb|EFD67082.1| transcription elongation factor greA [Streptomyces lividans TK24] Length = 165 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K+++EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKEELEYLTGPARTEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G +A G V++ + + D + + + A S SP Sbjct: 71 TQLLESAKVGEAPAADG-VVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + ++G ++GD P G Sbjct: 130 LGSGVLGHKVGDDAQYELPNG 150 >gi|254381990|ref|ZP_04997353.1| transcription elongation factor greA [Streptomyces sp. Mg1] gi|194340898|gb|EDX21864.1| transcription elongation factor greA [Streptomyces sp. Mg1] Length = 165 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQAAYDQLKAELDYLSGPARTEIATKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + S +A G V + + + D + + + A + S SP Sbjct: 71 TQLLENAKV-GTAPASDGVVAPGTLVKIAFDGDEDDTMEFLLASREYASSEFETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155 + ++ K++G+ P G+K T +IL V Sbjct: 130 LGSGVLNKKIGEDAEYELPNGKKATVKILDV 160 >gi|302542896|ref|ZP_07295238.1| transcription elongation factor GreA [Streptomyces hygroscopicus ATCC 53653] gi|302460514|gb|EFL23607.1| transcription elongation factor GreA [Streptomyces himastatinicus ATCC 53653] Length = 165 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYDQLKAELEYLSGPARIEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ A+V + +G +A G V++ D ++ +E ADV++ S Sbjct: 71 TQLLEHAKVGEAPADTG-VVAPGMVVTIAFDGDPDDTLTFLLASREYASADVET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ + GK++G P G Sbjct: 128 SPLGTGVNGKKVGQDAEYELPNG 150 >gi|302039171|ref|YP_003799493.1| transcription elongation factor, greA/greB family [Candidatus Nitrospira defluvii] gi|300607235|emb|CBK43568.1| Transcription elongation factor, greA/greB family [Candidatus Nitrospira defluvii] Length = 138 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + LEN + RA V+D S + D + + V + + +G + Y +V +A +Q +S Sbjct: 33 HLESLENELDRAHVVDPSAVPHDVVTMNSQVRIEDVETGAENVYTLVFPSDAGIQEKKLS 92 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +PI AL+G G+ + + P G +T I +VL+ Sbjct: 93 ILAPIGTALLGARAGETVDWSVPAGVRTVRIKEVLY 128 >gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium kroppenstedtii DSM 44385] gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii DSM 44385] Length = 168 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++++EL + RP I I+E R GDL EN Y AA+E Q E R+A L Sbjct: 10 LTQEAYDRLKKELD-DLKANRPVIAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI----VGDQEADVQSGLVSI 122 E ++ A + + + SG + + + D + + I V D+++ S Sbjct: 69 EELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLET--YST 126 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +P+ A++G + G+ P G Sbjct: 127 DAPLGAAIVGAKEGETREYQTPNG 150 >gi|148557737|ref|YP_001265319.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148502927|gb|ABQ71181.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 157 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L TR ++I + GD AFG V + +G +K IVGD EAD +GLVS S Sbjct: 67 DLRYWTTRHATMEIQPPADGDEAAFGTRVRY--RLNGQEKAVAIVGDDEADPAAGLVSFS 124 Query: 124 SPIARALIGKELGDI 138 SP+ARALIG GD Sbjct: 125 SPLARALIGAGEGDF 139 >gi|302558762|ref|ZP_07311104.1| transcription elongation factor GreA [Streptomyces griseoflavus Tu4000] gi|302476380|gb|EFL39473.1| transcription elongation factor GreA [Streptomyces griseoflavus Tu4000] Length = 165 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKVELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G +A G V++ + + D + + + A + S SP Sbjct: 71 TQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + ++G ++G+ P G+K Sbjct: 130 LGSGVMGHKVGEDAEYELPNGKK 152 >gi|319784595|ref|YP_004144071.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170483|gb|ADV14021.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 157 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + FG V+ +E + G K +++IVG+ EAD G +S SP+A AL GK++GD+ SVN Sbjct: 88 DVVRFGMGVT-IESDDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKIGDLASVNG 146 Query: 144 PGGEKTYEILQV 155 K +EI+++ Sbjct: 147 ----KEWEIVKL 154 >gi|326388482|ref|ZP_08210077.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326207030|gb|EGD57852.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 4/73 (5%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 G +AFG TV+ + +G + IVGD EAD +GL+S S+P++RA++ E+G+++ + Sbjct: 91 GSHVAFGCTVTF--RMNGKTRTVTIVGDDEADPAAGLLSFSAPLSRAMMDAEVGELVDFS 148 Query: 143 APGGEKTYEILQV 155 G + EI+ + Sbjct: 149 --GKPEAIEIVAI 159 >gi|227504093|ref|ZP_03934142.1| transcription elongation factor GreA [Corynebacterium striatum ATCC 6940] gi|227199327|gb|EEI79375.1| transcription elongation factor GreA [Corynebacterium striatum ATCC 6940] Length = 173 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 + RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A + G Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTERTAIQEG- 84 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLVSISSPIARALIGKELGDII 139 A G+ V + D K ++G + A D+++ S SP+ ALIG G+ Sbjct: 85 VAAIGSVVHVYYNGDKDDKETFLIGTRAAASDNKDLET--YSEQSPLGAALIGAHEGETR 142 Query: 140 SVNAPGG 146 AP G Sbjct: 143 EYTAPNG 149 >gi|320334324|ref|YP_004171035.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319755613|gb|ADV67370.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 157 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 31/167 (18%) Query: 1 MVDKIPVTSKGFDKIQQELR------------WRQQEERPRIIKAISEARAYGDLSENAE 48 M I VT+ G ++Q L R+Q E +EA + G L+E + Sbjct: 1 MASPIQVTAAGLQRLQGSLDRERERAEEARRVLREQME-------ANEAESLG-LTEAQQ 52 Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 + AA E R+ ELE +I AEV+ ST D +A G+T++L+ +G + ++V Sbjct: 53 HLAAIE------ARIEELEGMIADAEVLPAST--SDAVALGSTLTLLNVENGQVRRVRLV 104 Query: 109 GDQEADVQS---GLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 EA L+S SP+ AL+G+ +G+ SV G Y++ Sbjct: 105 SPVEATGSVDGVALISTQSPVGAALLGRRVGETFSVRLGGRTAEYQV 151 >gi|291295876|ref|YP_003507274.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279] gi|290470835|gb|ADD28254.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279] Length = 157 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 10/157 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKA---ISEARAYGDLSENAEYQAAKELQN 57 M ++ +T G++++ EL ++ER R+ A + E D +++ + AK + Sbjct: 1 MAREVKLTKSGYERLVAEL----EQERARLQDATRILQELMESSDDYDDSGLEDAKREKA 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ L + ++RA++++ ++ GA VSL K G+ Q+V EA V Sbjct: 57 RIEARIDSLTDTLSRAQIMEEEGTKVSQVTLGAIVSLRSKE-GEIMEVQVVAPAEASVLE 115 Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEI 152 + IS SP+ RAL+G+++G + + P G+K ++I Sbjct: 116 RPMKISDESPMGRALLGQQVGAKVLLETPKGKKEFKI 152 >gi|13476329|ref|NP_107899.1| transcription elongation factor greA [Mesorhizobium loti MAFF303099] gi|14027090|dbj|BAB54044.1| transcription elongation factor; GreA [Mesorhizobium loti MAFF303099] Length = 157 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + FG V+L E + G K +++IVG+ EAD G +S SP+A AL GK++GD+ +VN Sbjct: 88 DVVRFGMGVTL-EADDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKVGDVAAVNG 146 Query: 144 PGGEKTYEILQV 155 K +EI+++ Sbjct: 147 ----KEWEIVKL 154 >gi|312963140|ref|ZP_07777625.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] gi|311282651|gb|EFQ61247.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] Length = 165 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S D++ G+ V+ + +++ Q+VG+ +AD +GL++ SP+ RA Sbjct: 78 VQSAQVVPPAT-SCDKVQIGSWVTFANEQD-EQQRVQLVGEDQADANAGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 L+G ++GD + P G++ E+L+V Sbjct: 136 LLGAQVGDEVLWKRPVGDQLIEVLRV 161 >gi|77461094|ref|YP_350601.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1] gi|77385097|gb|ABA76610.1| putative transcription elongation factor [Pseudomonas fluorescens Pf0-1] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 9/101 (8%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V T S D++ G+ V+ +++ G ++ Q+VG+ +AD Sbjct: 63 RLADLERDLRYFNQRVASAQVAPAPT-SNDKVQIGSWVTYADEH-GTERRVQLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +GL++ +SP+ RAL+G L D + P G++ E++++ Sbjct: 121 AANGLINWASPLGRALLGARLNDEVLWQRPAGDQVIEVIRI 161 >gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN] gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923] gi|6226624|sp|P46808|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799564|sp|B8ZT53|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae] gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923] Length = 164 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG---LVS 121 ++++ A+V + SG +A +V V N D + + I QE V G + S Sbjct: 68 QDLLNIAKVGEAPKQSG--VALPGSVVKVYYNDDKSDTETFLIATRQEG-VNEGKLEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149 >gi|307324420|ref|ZP_07603628.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu 4113] gi|306890151|gb|EFN21129.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu 4113] Length = 165 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ +A+V + +G +A G V++ + + D + + + A S SP Sbjct: 71 TQLLQQAKVGEAPADTG-VVAPGMVVTIAFDGDPDDTLTFLLASREYASANIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK++G P G Sbjct: 130 LGSGVNGKKVGQDAEYELPNG 150 >gi|239979735|ref|ZP_04702259.1| transcription elongation factor GreA [Streptomyces albus J1074] gi|291451596|ref|ZP_06590986.1| transcription elongation factor [Streptomyces albus J1074] gi|291354545|gb|EFE81447.1| transcription elongation factor [Streptomyces albus J1074] Length = 165 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEISKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ +A+V + G + G V++ D ++ +E AD+++ S Sbjct: 71 TQLLAQAKVGEPPADDG-IVEPGMVVTIAFDGDPDDTLTFLMASREYASADIET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ + GK++GD P G++ Sbjct: 128 SPLGTGVNGKKVGDTAEYELPNGKR 152 >gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae] Length = 202 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 47 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 105 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG---LVS 121 ++++ A+V + SG +A +V V N D + + I QE V G + S Sbjct: 106 QDLLNIAKVGEAPKQSG--VALPGSVVKVYYNDDKSDTETFLIATRQEG-VNEGKLEVYS 162 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SP+ ALI ++G+ S P G Sbjct: 163 PNSPLGGALIDAKVGETRSYTVPNG 187 >gi|50955274|ref|YP_062562.1| transcription elongation factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951756|gb|AAT89457.1| transcription elongation factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 163 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL R I K I AR GDL EN Y AAK+ Q E R+ +L Sbjct: 10 LTQDAYDRLAAELEELSVNGRAEIAKRIEAAREEGDLKENGGYHAAKDEQGKIEARIVQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 ++ R+ + + S + G V+ +GD+ + ++G++E + L S S Sbjct: 70 TALL-RSATVGAAPESHGIVEPGTVVTAT--IAGDESAF-LIGNREIATGTELPVYSEQS 125 Query: 125 PIARALIGKELGDIISVNAPGGEK 148 P+ A++G ++GD AP G + Sbjct: 126 PLGAAILGLKIGDTTEYTAPNGRQ 149 >gi|307140091|ref|ZP_07499447.1| transcription elongation factor GreB [Escherichia coli H736] Length = 93 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAF 88 + L + +++D S ++ F Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFF 87 >gi|227501557|ref|ZP_03931606.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49725] gi|306835715|ref|ZP_07468721.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49726] gi|227077582|gb|EEI15545.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49725] gi|304568433|gb|EFM43992.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49726] Length = 173 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 + RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ + + TM Sbjct: 26 DHRPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISELLANS-TTERGTMQEG 84 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141 G+ V + + D K ++G + A + S SP+ A+IG + G+ Sbjct: 85 VAYTGSVVHVYYNGNKDDKETFLIGTRAAATDNKDLETYSEQSPLGAAIIGAQEGETREY 144 Query: 142 NAPGG 146 +AP G Sbjct: 145 SAPNG 149 >gi|262369483|ref|ZP_06062811.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] gi|262315551|gb|EEY96590.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] Length = 100 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSPIARALIGK 133 +ID S +I FGA V +E + G++K +IVG D+ D +SI SP+ARAL+ K Sbjct: 10 IIDFSEEQAGKIYFGAWVE-IENDEGEQKTLRIVGVDEIYDHHPQHISIDSPMARALLSK 68 Query: 134 ELGDIISVNAPGGEKTYEI 152 ++ D I V P G+K + + Sbjct: 69 QVDDEIEVLTPTGKKHWYV 87 >gi|325286071|ref|YP_004261861.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489] gi|324321525|gb|ADY28990.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90 YG L E EY K+L NL+ + +A+L N + A V D M D I F + Sbjct: 3 YGGLIIEKKEYVLLKKLMNLSGYHKDATYKKSIAKLNNELKTAAVKDEKDMPTDVIRFNS 62 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150 V+ V + G +K++Q+V ++D+++ +SI +P+ A+IG GD + P GEKT Sbjct: 63 IVT-VTADEGWQKSFQLVKPSDSDLKNKKLSILTPMGTAVIGYAKGDKLLWEFPAGEKTL 121 Query: 151 EILQV 155 + V Sbjct: 122 TVNNV 126 >gi|298291344|ref|YP_003693283.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296927855|gb|ADH88664.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 166 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 14/106 (13%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 QA++EL+ + R A E + AE G+ I FG V+L E G ++ ++IVG Sbjct: 60 QASRELRYWS-SRRANAEPVDPPAE--------GEAITFGMQVTL-EAEDGAQRRFRIVG 109 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + EA+ + G ++ SP+ARAL+GK +GD +S+ P G T EI+ V Sbjct: 110 EDEAEPREGRIAWISPVARALMGKWIGDEVSL--PVG--TMEIVAV 151 >gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] Length = 167 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ L Sbjct: 12 LTQDAYDRLKHELD-EMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRHL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A+V + G E + D+K ++ A+ + + S SP+ Sbjct: 71 QELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDEDEKFLLATREEGAEGELDVYSPESPL 130 Query: 127 ARALIGKELGDIISVNAPGG 146 +AL+G + G+ P G Sbjct: 131 GKALLGAKEGESREYELPNG 150 >gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1] gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4] gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1] gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4] Length = 164 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKSELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124 + ++ A+V + T SG + + + D + + I +E D + + S +S Sbjct: 68 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNKLEVYSPNS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+ ++G+ P G Sbjct: 128 PLGGALLEAKVGETREYTLPNG 149 >gi|295690226|ref|YP_003593919.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756] gi|295432129|gb|ADG11301.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756] Length = 160 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 9/65 (13%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 GDR+ F E+ G + ++IVG+ EAD G VS +PIARAL+GK +G+ + Sbjct: 98 GDRVTF-------EREDGRVQTFRIVGEDEADPAKGSVSYIAPIARALLGKAVGE--TAP 148 Query: 143 APGGE 147 APGGE Sbjct: 149 APGGE 153 >gi|77462558|ref|YP_352062.1| putative transcription elongation factor [Rhodobacter sphaeroides 2.4.1] gi|126461492|ref|YP_001042606.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] gi|77386976|gb|ABA78161.1| putative transcription elongation factor [Rhodobacter sphaeroides 2.4.1] gi|126103156|gb|ABN75834.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] Length = 164 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE I A ++D + D +AFG V+ VE +G + ++I G+ EA + ++ +P Sbjct: 72 LEARIASAILVDPAAQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+G LG+ + P GE T + Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157 >gi|300934084|ref|ZP_07149340.1| transcription elongation factor GreA [Corynebacterium resistens DSM 45100] Length = 173 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+A L Sbjct: 9 LTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121 E ++ A + + SG + G+ + + + D K ++G + D+++ S Sbjct: 68 EELLDNATIGEAPQESGVAL-VGSVIHVYYDDDEDDKETFLIGTRGLESSNPDLET--YS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 +P+ A++G ++G+ P G+ Sbjct: 125 TDAPLGAAIVGAKVGESREYQTPNGD 150 >gi|70732647|ref|YP_262410.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] gi|68346946|gb|AAY94552.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 9/101 (8%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 RMAELE + A+V+ + S D++ G+ V+ ++ +++ Q+VG+ +AD Sbjct: 96 RMAELERDLRYFTQRLHSAQVVTTAN-STDKVQIGSRVTFADEQD-RQQSVQLVGEDQAD 153 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 GL++ +SP+ RAL+G + GD + P G + EI+++ Sbjct: 154 AAKGLINWASPLGRALLGAQPGDEVLWQRPAGNQLIEIIRI 194 >gi|312602260|ref|YP_004022105.1| regulator of nucleoside diphosphate kinase [Burkholderia rhizoxinica HKI 454] gi|312169574|emb|CBW76586.1| Regulator of nucleoside diphosphate kinase [Burkholderia rhizoxinica HKI 454] Length = 195 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 12/140 (8%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78 LRWR + + + + D+S + A Q+ G L+ ++ RA V++ Sbjct: 57 LRWRNKMKTCYLTET--------DVSRLERHAAQASPQS---GYQTMLDALLERAAVVEA 105 Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 + + + +TV+L +SG++ + +V AD G +++ SP+ AL+G GD Sbjct: 106 TDIDPSVVTMNSTVTLSNPSSGERMTWTVVYPPNADFSQGRLNVFSPVGLALLGATPGDE 165 Query: 139 ISVNAP-GGEKTYEILQVLW 157 + V P G +T ++ Q+++ Sbjct: 166 LRVTPPSGAPQTLKVEQIVF 185 >gi|221638413|ref|YP_002524675.1| transcription elongation factor [Rhodobacter sphaeroides KD131] gi|221159194|gb|ACM00174.1| Transcription elongation factor [Rhodobacter sphaeroides KD131] Length = 164 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE I A ++D + D +AFG V+ VE +G + ++I G+ EA + ++ +P Sbjct: 72 LEARIASAILVDPAAQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 +ARAL+G LG+ + P GE T + Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157 >gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM 10152] gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica IFM 10152] Length = 164 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKSELDALIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 + ++ A+V T SG + + + D + + I +E S L + S S Sbjct: 68 QELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSDLETYSPNS 127 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ ALI ++G+ P G Sbjct: 128 PLGGALIDAKVGETREYTLPNG 149 >gi|46206102|ref|ZP_00047698.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 74 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+ARAL GK +GD ++VN Sbjct: 7 DVVRFGATVTVLREDD-TRQIFRIVGEDEADPAAGSISYVAPLARALTGKGVGDTVTVNG 65 Query: 144 PGGEKTYEILQV 155 +EI ++ Sbjct: 66 ----HDFEIAEI 73 >gi|297192437|ref|ZP_06909835.1| transcription elongation factor [Streptomyces pristinaespiralis ATCC 25486] gi|197717974|gb|EDY61882.1| transcription elongation factor [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 6/145 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ A+V + G + G V++ D ++ +E AD+++ S Sbjct: 71 TQLLDNAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASADIET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ + GK++GD P G+K Sbjct: 128 SPLGVGVNGKKVGDDAEYELPNGKK 152 >gi|90420487|ref|ZP_01228394.1| possible transcription elongation factor, GreA/GreB family [Aurantimonas manganoxydans SI85-9A1] gi|90335215|gb|EAS48968.1| possible transcription elongation factor, GreA/GreB family [Aurantimonas manganoxydans SI85-9A1] Length = 158 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 +G FG+ VS +E+ G + + IVG EAD +GL+S SP+AR+LIG+ +GDI+ Sbjct: 85 TGGTAQFGSVVS-IEREDGRTQQFTIVGIDEADPSAGLISYLSPLARSLIGRTVGDIV 141 >gi|170695928|ref|ZP_02887067.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M] gi|170139112|gb|EDT07301.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV+++SG++ + +V +AD G +++ SP Sbjct: 37 LDDVLERAVIVDSREIPANVVTMNSQATLVDESSGEQMTWTVVYPPDADFAHGRLNVFSP 96 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G + G+ I P G EK ++ ++L+ Sbjct: 97 VGLALLGAKRGEHIHFMPPSGAEKVLKLEKILY 129 >gi|167589792|ref|ZP_02382180.1| GreA/GreB family elongation factor [Burkholderia ubonensis Bu] Length = 132 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 58/95 (61%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++L+++ + +K + IV +EA+++ G +++ Sbjct: 28 AMLDALLERADIVQPDAIKANVVTMNSQITLLDETNHEKTTWTIVYPEEANLEQGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + G ++ V P G EK ++ ++++ Sbjct: 88 SPVGMALLGTQRGQLVKVMQPSGTEKLMKVAEIVF 122 >gi|328884670|emb|CCA57909.1| Transcription elongation factor GreA [Streptomyces venezuelae ATCC 10712] Length = 165 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 3/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNKLKDELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A S SP Sbjct: 71 TQLLQHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTMTFLLASREYASGDIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEIL 153 + + GK+ GD P G+K T +IL Sbjct: 130 LGVGVNGKKAGDDAQYELPNGKKATVKIL 158 >gi|115523623|ref|YP_780534.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisA53] gi|115517570|gb|ABJ05554.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisA53] Length = 160 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 S + +AFG TV+ + G + Y+IVG+ EAD ++G +S SP+AR L+ K +GD++ Sbjct: 91 STEAVAFGHTVTF-RRADGRVQTYRIVGEDEADPKAGSISFVSPVARLLMRKAVGDVVG- 148 Query: 142 NAPGGEKTYEILQV 155 G+ EI+ + Sbjct: 149 ---AGDHELEIIAI 159 >gi|331644106|ref|ZP_08345235.1| transcription elongation factor GreB (Transcript cleavage factorgreB) [Escherichia coli H736] gi|331036400|gb|EGI08626.1| transcription elongation factor GreB (Transcript cleavage factorgreB) [Escherichia coli H736] Length = 114 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FGA V +E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE Sbjct: 43 FGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGE 101 Query: 148 KTYEI 152 ++ + Sbjct: 102 ASWYV 106 >gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca ATCC 27029] gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5] gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca ATCC 27029] gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5] Length = 166 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L Sbjct: 13 LSQDAYDRLQAELD-ELIANRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124 + ++ A+V + D ++ G V + + D ++G +E + L S S Sbjct: 72 KELLRTAKVGEAPDT--DAVSPGMVVKIYFDDDADDSETFLLGSREIASTTDLTVYSPES 129 Query: 125 PIARALIGKELGDIISVNAPGG 146 + +A++G + G + AP G Sbjct: 130 ALGKAILGGKAGQTCTYTAPSG 151 >gi|170723669|ref|YP_001751357.1| GreA/GreB family elongation factor [Pseudomonas putida W619] gi|169761672|gb|ACA74988.1| GreA/GreB family elongation factor [Pseudomonas putida W619] Length = 165 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V ++ G ++ Q+VG+ EAD GL++ SP+ RA Sbjct: 78 VQSAQVVPAAT-SNSKVQIGSRVRFADEQ-GQEQTVQLVGEDEADASRGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L+G GD ++ P G++ E++ ++ Sbjct: 136 LLGAGPGDEVTWRRPAGDQVIEVMDIV 162 >gi|229592705|ref|YP_002874824.1| putative transcription elongation factor [Pseudomonas fluorescens SBW25] gi|229364571|emb|CAY52453.1| putative transcription elongation factor [Pseudomonas fluorescens SBW25] Length = 162 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S D++ G+ V+ + +++ Q+VG+ +AD +GL++ SP+ RA Sbjct: 75 LQSAQVVAPAT-STDKVQIGSWVTFANEQD-EQQRIQLVGEDQADANAGLINWGSPLGRA 132 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 L+G ++GD + P G++ E+L++ Sbjct: 133 LLGAQVGDEVLWKRPVGDQLIEVLRI 158 >gi|29829843|ref|NP_824477.1| transcription elongation factor GreA [Streptomyces avermitilis MA-4680] gi|81719423|sp|Q82I57|GREA_STRAW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|29606952|dbj|BAC71012.1| putative transcription elongation factor [Streptomyces avermitilis MA-4680] Length = 165 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G +A G V++ + + D ++ + + A S SP Sbjct: 71 TQLLENAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLDFLLASREYASADIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK++G+ P G Sbjct: 130 LGSGVNGKKVGEDAQYELPNG 150 >gi|330811840|ref|YP_004356302.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379948|gb|AEA71298.1| Putative transcription factor, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 163 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 ++ S D++ G V+ V++ +++ Q+VG+ +AD SGL++ SP+ RAL+G ++GD Sbjct: 84 VAPTSSDQVRIGHWVTFVDEQDHEQR-VQLVGEDQADAASGLINWGSPLGRALLGAKVGD 142 Query: 138 IISVNAPGGEKTYEILQV 155 ++ P G E++ + Sbjct: 143 EVTWERPLGNLAIEVVAI 160 >gi|91774873|ref|YP_544629.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91708860|gb|ABE48788.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 138 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 52/93 (55%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A LE+ + R+E + + D + + V L ++ +G + + +V +AD + +S+ Sbjct: 34 LARLEDELARSEEVPSEQVGADVVTMNSRVLLRDEANGHEMSCTLVFPSDADASANRISV 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +P+ A++G +GD+I PGG + Y IL++ Sbjct: 94 VAPLGTAILGYRVGDVIDWAMPGGVRQYRILKI 126 >gi|290957897|ref|YP_003489079.1| transcription elongation factor [Streptomyces scabiei 87.22] gi|260647423|emb|CBG70528.1| putative transcription elongation factor [Streptomyces scabiei 87.22] Length = 166 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLRAELDYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + + +A G V++ + + D + + + A S SP Sbjct: 71 TQLLENAKVGEAPASADGAVAPGMVVTIAFDGDEDDTVTFLLASREYASSDIETYSPQSP 130 Query: 126 IARALIGKELGDIISVNAPGGE 147 + + GK++G P G+ Sbjct: 131 LGSGVTGKKVGQDAQYELPNGK 152 >gi|94498026|ref|ZP_01304589.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58] gi|94422461|gb|EAT07499.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58] Length = 156 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 GD +AFG V+ + SG K+ +VGD EAD G +S SSP+ARA++ E+G+ + Sbjct: 82 GDVVAFGTRVTY--RQSGQDKSVVLVGDDEADPHDGRISFSSPVARAMMDAEVGEKV 136 >gi|89891757|ref|ZP_01203260.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7] gi|89516092|gb|EAS18756.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7] Length = 139 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 9/108 (8%) Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 +++ K LQ L + EL+N A+++D M D I F + ++ V+ N G K QI Sbjct: 28 DFETQKSLQRLTD----ELKN----AQILDELDMPQDVIRFNSKIT-VKSNKGWSKKIQI 78 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 V D+ +SI +P+A AL+G DII N P G + EI++V Sbjct: 79 VIPALKDLDLDRISILTPLASALLGYAQSDIIQWNLPSGLQELEIVEV 126 >gi|323526690|ref|YP_004228843.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001] gi|323383692|gb|ADX55783.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001] Length = 139 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV++ SG++ + +V +AD G +++ SP Sbjct: 37 LDDVLERAVIVDSRDIPANVVTMNSQATLVDETSGEEMTWTVVYPPDADFTHGRLNVFSP 96 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G + G+ I P G EK ++ ++L+ Sbjct: 97 VGLALLGAKRGEQIRFMPPSGDEKVLKLAKILY 129 >gi|16126441|ref|NP_421005.1| transcription elongation factor regulatory protein [Caulobacter crescentus CB15] gi|221235222|ref|YP_002517658.1| transcription elongation factor regulatory protein [Caulobacter crescentus NA1000] gi|13423705|gb|AAK24173.1| transcription elongation factor GreA/GreB, family [Caulobacter crescentus CB15] gi|220964394|gb|ACL95750.1| transcription elongation factor greB [Caulobacter crescentus NA1000] Length = 160 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 9/65 (13%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 GDR+ F E+ G + ++IVG+ +AD G +S +PIARAL+GK +G++ + Sbjct: 98 GDRVTF-------EREDGRVQTFRIVGEDQADPAKGTISYIAPIARALLGKAVGEVSA-- 148 Query: 143 APGGE 147 APGGE Sbjct: 149 APGGE 153 >gi|53717174|ref|YP_105968.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 23344] gi|67643290|ref|ZP_00442037.1| transcription elongation factor [Burkholderia mallei GB8 horse 4] gi|76817365|ref|YP_337627.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710b] gi|121598026|ref|YP_989947.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei SAVP1] gi|124381514|ref|YP_001024430.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10229] gi|126445041|ref|YP_001062285.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 668] gi|126447434|ref|YP_001078147.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10247] gi|167000163|ref|ZP_02265983.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei PRL-20] gi|167819370|ref|ZP_02451050.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 91] gi|167827743|ref|ZP_02459214.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 9] gi|167897815|ref|ZP_02485217.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 7894] gi|167922382|ref|ZP_02509473.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei BCC215] gi|226197683|ref|ZP_03793258.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pakistan 9] gi|254174295|ref|ZP_04880957.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 10399] gi|254183333|ref|ZP_04889925.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1655] gi|254189966|ref|ZP_04896475.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pasteur 52237] gi|254193144|ref|ZP_04899579.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei S13] gi|254200813|ref|ZP_04907178.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei FMH] gi|254204783|ref|ZP_04911136.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei JHU] gi|254265246|ref|ZP_04956111.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710a] gi|254357032|ref|ZP_04973307.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei 2002721280] gi|52423144|gb|AAU46714.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 23344] gi|76581838|gb|ABA51312.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710b] gi|121225824|gb|ABM49355.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei SAVP1] gi|124289534|gb|ABM98803.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10229] gi|126224532|gb|ABN88037.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 668] gi|126240288|gb|ABO03400.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10247] gi|147748425|gb|EDK55500.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei FMH] gi|147754369|gb|EDK61433.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei JHU] gi|148026059|gb|EDK84182.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei 2002721280] gi|157937643|gb|EDO93313.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pasteur 52237] gi|160695341|gb|EDP85311.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 10399] gi|169649898|gb|EDS82591.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei S13] gi|184213866|gb|EDU10909.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1655] gi|225930292|gb|EEH26304.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pakistan 9] gi|238524601|gb|EEP88033.1| transcription elongation factor [Burkholderia mallei GB8 horse 4] gi|243063816|gb|EES46002.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei PRL-20] gi|254216248|gb|EET05633.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710a] Length = 132 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + + L+++ +G + + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I+++++ Sbjct: 90 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122 >gi|15806968|ref|NP_295693.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6459759|gb|AAF11523.1|AE002035_6 transcription elongation factor [Deinococcus radiodurans R1] Length = 161 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 4 KIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +GF+++++ L Q E RI++ E A D + A +E N+ E Sbjct: 6 QVRLTREGFERLEKALEQEQNRLNEATRILQEQMETSA--DNEDTGLEDAKREKMNI-EA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118 R+ ELE+ + RA +I+ +G R+ GA V L + S Q+V EA + G Sbjct: 63 RIDELEDTLARATLIE-DQENGGRVELGAIVQLSNETSKKDMKVQVVSAAEAAMVGGSIT 121 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148 +S SP+ R L+G++ G+ V GG++ Sbjct: 122 RISEESPVGRELMGRKKGESFVVTLEGGKQ 151 >gi|256389881|ref|YP_003111445.1| transcription elongation factor GreA [Catenulispora acidiphila DSM 44928] gi|256356107|gb|ACU69604.1| transcription elongation factor GreA [Catenulispora acidiphila DSM 44928] Length = 164 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL+ R I + I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQDAYDRLTAELQQLSGPGRVEIAQKIEAAREEGDLRENGGYHAAKEEQGKIELRIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125 ++ A+V D S SG + GA V++ D ++G +E A + S SP Sbjct: 71 TQLLEHAKVGD-SVESGVAVP-GAVVTIAFDGDEDDTLTFLLGSREDAADNMEVYSAQSP 128 Query: 126 IARALIGKELGDIISVNAPGGE 147 + A+ GK++G+ P G+ Sbjct: 129 LGGAINGKKIGEQAEYELPNGK 150 >gi|53721904|ref|YP_110889.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52212318|emb|CAH38342.1| putative transcription elongation factor [Burkholderia pseudomallei K96243] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + + L+++ +G + + IV A+ + G +++ SP Sbjct: 34 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSP 93 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I+++++ Sbjct: 94 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 126 >gi|307729138|ref|YP_003906362.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307583673|gb|ADN57071.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 139 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV++ SG+ + +V EAD G +++ SP Sbjct: 37 LDDVLERAVIVDSREIPANVLTMNSQATLVDEASGEHMTWTVVYPPEADFAHGRLNVFSP 96 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G + G+ I P G EK ++ ++L+ Sbjct: 97 VGLALLGAKRGEQIRFMPPSGDEKVLKLEKILY 129 >gi|260462428|ref|ZP_05810636.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] gi|259031922|gb|EEW33190.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] Length = 157 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + FG V+L E + G K +++IVG+ EA+ G +S SP+A AL GK++G++++VN Sbjct: 88 DLVRFGMGVTL-EGDDGRKVHWKIVGEDEANPSKGSISHVSPMAVALFGKKVGEVVTVNG 146 Query: 144 PGGEKTYEILQV 155 K +EI+++ Sbjct: 147 ----KEWEIVKL 154 >gi|300023335|ref|YP_003755946.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525156|gb|ADJ23625.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] Length = 152 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 19/117 (16%) Query: 53 KELQ-NLNEGRMAELENIITRAE-----------VIDISTMSGDR--IAFGATVSLVEKN 98 K LQ +LN R ++ N I RA ++ + D +AFG+ V+L E++ Sbjct: 40 KRLQEDLNAARESDDRNAIARASHDLRYWSQRLATAELQPPASDASVVAFGSRVTL-ERD 98 Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G + ++IVG+ EAD G +S SP+A+AL+GK GD +V A GE EI+++ Sbjct: 99 DGRMQKFRIVGEDEADPAKGSISYVSPLAQALLGKAAGD--TVKAGSGEA--EIIKI 151 >gi|300858139|ref|YP_003783122.1| transcription elongation factor [Corynebacterium pseudotuberculosis FRC41] gi|300685593|gb|ADK28515.1| Transcription elongation factor [Corynebacterium pseudotuberculosis FRC41] gi|302205860|gb|ADL10202.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis C231] gi|302330418|gb|ADL20612.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis 1002] gi|308276095|gb|ADO25994.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis I19] Length = 173 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ I+ + + + G Sbjct: 27 HRPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEILANSTTERVGIVEG-- 84 Query: 86 IAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGDI 138 +A +V V N GDK + + ++G + A D+++ S SP+ A+IG + G+ Sbjct: 85 VAHIGSVVHVYYN-GDKNDKETFLIGTRAAASDNKDLET--FSEQSPLGAAVIGAKEGET 141 Query: 139 ISVNAPGG 146 AP G Sbjct: 142 REYTAPNG 149 >gi|302381565|ref|YP_003817388.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides ATCC 15264] gi|302192193|gb|ADK99764.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides ATCC 15264] Length = 158 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 RA + T + R+ FG +V+ +E+ G + ++IVG+ EAD +G VS SP+ARAL Sbjct: 79 RANAQVVETAAEGRVRFGGSVT-IEREDGRTQTWRIVGEDEADPANGSVSHVSPLARALT 137 Query: 132 GKELGD 137 GK +GD Sbjct: 138 GKGVGD 143 >gi|254785677|ref|YP_003073106.1| transcription elongation factor GreA [Teredinibacter turnerae T7901] gi|237684826|gb|ACR12090.1| transcription elongation factor GreA [Teredinibacter turnerae T7901] Length = 126 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 L +L + AEL + A V+D + G R+ FG+ V++ + +++++QIV E+ Sbjct: 21 LSSLPDTDAAELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIVSSDESL 80 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 GL+ SP+A+AL G G+++ V G YE+ + Sbjct: 81 SGRGLLDQRSPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122 >gi|146275634|ref|YP_001165794.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|145322325|gb|ABP64268.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 151 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V+D D +AFG+TV+ V +G + IVG EAD +GL++ S+P+ARAL G Sbjct: 74 AQVMD--PPQADVVAFGSTVTFV--LNGQNRRITIVGHDEADPTAGLIAFSAPLARALNG 129 Query: 133 KELGDIISVNAPGGEKTYEILQV 155 E G+ +V+ G E+L + Sbjct: 130 AEAGE--TVDFGGRADAIEVLSI 150 >gi|110639992|ref|YP_680202.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] gi|110282673|gb|ABG60859.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] Length = 149 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88 RI + I+EA+ + +S +A + L G++ E E I + + Sbjct: 26 RIQQCINEAKQFKSISV---VEANSLMNELKLGKLVEPEEI------------PNNVVTM 70 Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V++V +S + +Q+V +ADV++ +SI SPIA ALIG ++GD I P G Sbjct: 71 HSIVTIVFMDSNKRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAG 128 >gi|104780044|ref|YP_606542.1| transcription elongation factor [Pseudomonas entomophila L48] gi|95109031|emb|CAK13727.1| putative transcription elongation factor [Pseudomonas entomophila L48] Length = 165 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V V++N G Q+VG+ +AD GLV+ SP+ RA Sbjct: 78 LHSAQVVPAAT-STQKVQIGSRVRFVDEN-GQAHQVQLVGEDQADAVHGLVNWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 L+G GD + P G++ EI+ V Sbjct: 136 LLGAGPGDEVLWRRPAGDQMIEIIGV 161 >gi|88856089|ref|ZP_01130750.1| transcription elongation factor [marine actinobacterium PHSC20C1] gi|88814657|gb|EAR24518.1| transcription elongation factor [marine actinobacterium PHSC20C1] Length = 163 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 14/156 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + FD+ EL E R I K I AR GDL EN Y AAKE Q E R+ L Sbjct: 10 LTQEAFDRRTAELEQLTGEARYDIAKKIEAAREEGDLKENGGYHAAKEEQGKIEARIRVL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGD-QEADVQSGLV 120 ++ A V D+ G + G V+ K G++ + +IV D + DV S Sbjct: 70 TELLRHAVVGDVQDADG-LVEPGILVT--AKIMGEESVFLLGSREIVADGSDLDVYSE-- 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 SP+ A+ G ++G + AP G+ T EIL+V Sbjct: 125 --KSPLGLAINGLKVGSSATYTAPNGKDITVEILKV 158 >gi|91202773|emb|CAJ72412.1| similar to regulator of nucleoside diphosphate kinase [Candidatus Kuenenia stuttgartiensis] Length = 139 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 56/106 (52%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 A+E + +A L + RAEV+ + D + + V L + ++ +K Y +V + Sbjct: 24 AEEFGGQDRKDLASLAEELERAEVVSSKDVPADVVTMNSKVVLRDLSTSEKMTYVLVFPK 83 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A++ +G +S+ +P+ A++G GD++ + P G + I VL+ Sbjct: 84 DANIAAGAISVLAPVGTAILGYAKGDVVEWSVPSGVRRIRIDDVLY 129 >gi|254419345|ref|ZP_05033069.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Brevundimonas sp. BAL3] gi|196185522|gb|EDX80498.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Brevundimonas sp. BAL3] Length = 163 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + FG +VS +E+ G + ++IVG+ EAD G VS SP+ARAL+GK +GD Sbjct: 98 VRFGGSVS-IEREDGRTQTWRIVGEDEADPAKGSVSHVSPLARALLGKRIGD 148 >gi|94985009|ref|YP_604373.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] gi|94555290|gb|ABF45204.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] Length = 162 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 4 KIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +GF+++Q+ L Q E RI++ E A D + A +E N+ E Sbjct: 7 QVRLTREGFERLQRTLAQEQARLAEATRILQEQMETSA--DNEDTGLEDAKREKLNI-EA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118 R+ ELE+ + RA +I+ +G R+ GA V+L + + Q+V EA V G Sbjct: 64 RIEELEDTLARATLIEDHENAG-RVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLP 122 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148 +S SP+ R L+G++ + VN G++ Sbjct: 123 RISEESPVGRQLMGRKKDETFVVNLENGKQ 152 >gi|325109624|ref|YP_004270692.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM 5305] gi|324969892|gb|ADY60670.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM 5305] Length = 138 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 51/85 (60%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V++ + + + +T+ + E + + + Y +V + AD+ G +S+ +PI A++G Sbjct: 45 AQVVNSEEVPPNVVTMNSTIRMREVRTREMETYTLVYPERADIAEGKLSVLAPIGTAILG 104 Query: 133 KELGDIISVNAPGGEKTYEILQVLW 157 ++GDI+ N PGG ++I ++++ Sbjct: 105 YQVGDIVEWNVPGGTIRFKIEELVF 129 >gi|167647164|ref|YP_001684827.1| transcription elongation factor regulatory protein [Caulobacter sp. K31] gi|167349594|gb|ABZ72329.1| GreA/GreB family elongation factor [Caulobacter sp. K31] Length = 161 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + FG +V+ ++ G ++ ++IVG+ EAD G VS SP+ARAL+GK +GD V Sbjct: 92 DVLQFGGSVTF-DREDGRRQTFRIVGEDEADPTQGSVSYVSPVARALLGKAVGDTAIVA- 149 Query: 144 PGGE 147 GGE Sbjct: 150 -GGE 152 >gi|302062497|ref|ZP_07254038.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato K40] Length = 165 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 GL++ SP+ RALIG + GD ++ P G+ + E+L Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVTWQRPAGDLSIEVL 159 >gi|28871733|ref|NP_794352.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213966755|ref|ZP_03394906.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|301383263|ref|ZP_07231681.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato Max13] gi|302133480|ref|ZP_07259470.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854985|gb|AAO58047.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213928605|gb|EEB62149.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|331018897|gb|EGH98953.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 GL++ SP+ RALIG + GD ++ P G+ + E+L Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVTWQRPAGDLSIEVL 159 >gi|291298253|ref|YP_003509531.1| transcription elongation factor GreA [Stackebrandtia nassauensis DSM 44728] gi|290567473|gb|ADD40438.1| transcription elongation factor GreA [Stackebrandtia nassauensis DSM 44728] Length = 167 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 12/146 (8%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ + +D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+ L Sbjct: 13 LSQEAYDRLKAELD-EHIANRPAMAAEINARREEGDLRENGGYHAAKDEQGKIESRIRYL 71 Query: 67 ENIITRAEV----IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV-- 120 E+ + +A+V +D+ ++ G+ V++ + + ++G +E + L Sbjct: 72 EDFLRKAQVGEAPVDVKGVTP-----GSVVTIAFDDDPEDTETFLLGSREISATTDLTVY 126 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S S + A++G GD ++ AP G Sbjct: 127 SPESALGAAILGHAEGDTVTYTAPSG 152 >gi|134094680|ref|YP_001099755.1| hypothetical protein HEAR1457 [Herminiimonas arsenicoxydans] gi|133738583|emb|CAL61628.1| Putative transcription elongation factor GreA [Herminiimonas arsenicoxydans] Length = 139 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 47/82 (57%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL +II+ + ++ I+ D ++ +TVS NS +K++ IV Q+A+ Q L+S + Sbjct: 35 ELIDIISTSVILPINAPRKDCVSLYSTVSYSPYNSDEKRSITIVCPQDANPQLALISTLT 94 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI ALIG+++ I V P Sbjct: 95 PIGLALIGRKVSSTIEVELPSN 116 >gi|332716346|ref|YP_004443812.1| Transcription elongation factor [Agrobacterium sp. H13-3] gi|325063031|gb|ADY66721.1| Transcription elongation factor [Agrobacterium sp. H13-3] Length = 163 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 +AFG+ V+ ++ G + ++IVG+ EAD +G +S SP+A L+GK GD++S+ Sbjct: 98 VAFGSVVTF-SRDDGRTQRFRIVGEDEADPANGSMSYVSPVAGLLMGKSAGDVVSL---- 152 Query: 146 GEKTYEILQV 155 G K EI++V Sbjct: 153 GGKEIEIIEV 162 >gi|226356455|ref|YP_002786195.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226318445|gb|ACO46441.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 162 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 1 MVDKIPVTSKGFDKIQQEL---RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M D + +T +G+++++Q L R R +E + + +A + S NA Q +E Sbjct: 1 MPDAVQLTREGYERLEQSLEKERQRLEETITSLANTVDDAMDLENRSLNA-AQIGQERIA 59 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + E R+ ELE+++ RA +++ + ++A G+ V L + G + Q+V E + Sbjct: 60 I-EARILELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMT 118 Query: 118 -GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 G+ +S SP+ +AL+G+ G+ V G Y + V Sbjct: 119 EGVTQVSDDSPVGKALMGRREGETFDVELEAGRVQYTVRSV 159 >gi|90422718|ref|YP_531088.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] gi|90104732|gb|ABD86769.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 154 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 ++ FG+TV+ + +N ++ ++IVG+ EAD +G +S P+AR+L GK +GD++ Sbjct: 88 KVRFGSTVT-IRRNDDRRQTFRIVGEDEADPPNGTISHVLPLARSLFGKRVGDVV 141 >gi|319952551|ref|YP_004163818.1| grea/greb family elongation factor [Cellulophaga algicola DSM 14237] gi|319421211|gb|ADV48320.1| GreA/GreB family elongation factor [Cellulophaga algicola DSM 14237] Length = 139 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90 YG ++ E EY K +L+ + + +L ++ A+V + + M D I F + Sbjct: 3 YGTITIEKKEYVMLKRFLHLSGYHRDTTFKKSIRKLSEELSFAKVCNNNEMPKDVIRFNS 62 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150 V++ N+G K +Q+V +++D+++ VSI +P+ A+IG GD IS P GE+ Sbjct: 63 IVTITA-NNGWTKEFQLVTPKDSDLKNNKVSILTPMGAAVIGYAEGDTISWEFPSGEQQL 121 Query: 151 EILQV 155 + +V Sbjct: 122 TVSKV 126 >gi|239831415|ref|ZP_04679744.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG 3301] gi|239823682|gb|EEQ95250.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG 3301] Length = 157 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 + + D + FG TV L + G + + IVG+ EAD +G +S +P+A L GK + Sbjct: 79 LSVPAADSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPV 138 Query: 136 GDIISVN 142 GD++ +N Sbjct: 139 GDVVKIN 145 >gi|238062787|ref|ZP_04607496.1| transcription elongation factor greA [Micromonospora sp. ATCC 39149] gi|237884598|gb|EEP73426.1| transcription elongation factor greA [Micromonospora sp. ATCC 39149] Length = 166 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L+ ++ Sbjct: 18 HDRLQAELD-ELIANRPAIAAEINARREEGDLRENGGYHAAREEQGKQEGRILYLKELLR 76 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SISSPIARA 129 A+V + S D ++ G V++ + D ++G +E + L S S + ++ Sbjct: 77 TAQVGEAP--SADTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTELTVYSPESALGKS 134 Query: 130 LIGKELGDIISVNAPGG 146 ++G G ++ AP G Sbjct: 135 ILGTRPGQTVTYTAPSG 151 >gi|319795584|ref|YP_004157224.1| grea/greb family elongation factor [Variovorax paradoxus EPS] gi|315598047|gb|ADU39113.1| GreA/GreB family elongation factor [Variovorax paradoxus EPS] Length = 135 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 55 LQNLNEGRM---AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 L L GR A L +++ AEV+ + D + + LV+ ++G ++ + + Sbjct: 19 LSKLLPGRALLPAHLADLLASAEVMSSRAVPCDVVTMNSRAELVDVHTGRRQTLTVCFPK 78 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +A+ +G +S+ SP+ +L+G +GDI + P G+ E+ VL+ Sbjct: 79 DAEPAAGFISVLSPVGSSLLGLRVGDIARWHTPNGDDCAAEVAAVLF 125 >gi|169830342|ref|YP_001716324.1| GreA/GreB family elongation factor [Candidatus Desulforudis audaxviator MP104C] gi|169637186|gb|ACA58692.1| GreA/GreB family elongation factor [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ RA V++ G + + + + G + +++V E + +G VS SP+ R Sbjct: 63 LLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGHVSFLSPVGR 122 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+ KE G +++V APGG Y ++ V + Sbjct: 123 GLLLKEPGQVLAVQAPGGTFRYRVVSVTY 151 >gi|62289525|ref|YP_221318.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82699455|ref|YP_414029.1| transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189023782|ref|YP_001934550.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237815022|ref|ZP_04594020.1| Transcription elongation factor greA [Brucella abortus str. 2308 A] gi|254688843|ref|ZP_05152097.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 6 str. 870] gi|254696973|ref|ZP_05158801.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 2 str. 86/8/59] gi|254729874|ref|ZP_05188452.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 4 str. 292] gi|256257090|ref|ZP_05462626.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 9 str. C68] gi|260545721|ref|ZP_05821462.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|260754325|ref|ZP_05866673.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str. 870] gi|260757544|ref|ZP_05869892.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str. 292] gi|260761369|ref|ZP_05873712.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str. 86/8/59] gi|260883350|ref|ZP_05894964.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str. C68] gi|297247937|ref|ZP_06931655.1| transcription elongation factor regulatory protein [Brucella abortus bv. 5 str. B3196] gi|62195657|gb|AAX73957.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82615556|emb|CAJ10536.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189019354|gb|ACD72076.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237789859|gb|EEP64069.1| Transcription elongation factor greA [Brucella abortus str. 2308 A] gi|260097128|gb|EEW81003.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|260667862|gb|EEX54802.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str. 292] gi|260671801|gb|EEX58622.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str. 86/8/59] gi|260674433|gb|EEX61254.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str. 870] gi|260872878|gb|EEX79947.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str. C68] gi|297175106|gb|EFH34453.1| transcription elongation factor regulatory protein [Brucella abortus bv. 5 str. B3196] Length = 156 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTS G +I EL R+ ++EA G+ S A +L Sbjct: 28 VTSAGLKQIDDEL--------ARLQHDLAEANIAGERSAVARISR-------------DL 66 Query: 67 ENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + R E ++S + D + FG TV L + G + + IVG+ EAD G +S + Sbjct: 67 RYWMARRETAELSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVA 126 Query: 125 PIARALIGKELGDIISVN 142 P++ L GK +GD++ +N Sbjct: 127 PVSILLFGKPVGDVVKIN 144 >gi|237801440|ref|ZP_04589901.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024299|gb|EGI04356.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 116 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 +S D++ G+ V+ +++ +++ +VG+ +AD +GL++ SP+ RALIG GD + Sbjct: 38 AVSTDKVQIGSWVTFADEDD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGARQGDEV 96 Query: 140 SVNAPGGEKTYEIL 153 P G+ + E+L Sbjct: 97 VWQRPAGDLSIEVL 110 >gi|28493647|ref|NP_787808.1| transcription elongation factor [Tropheryma whipplei str. Twist] gi|28476689|gb|AAO44777.1| transcription elongation factor [Tropheryma whipplei str. Twist] Length = 172 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R I K I +AR+ GDL EN Y AAKE Q EGR+ +L++++ A V G Sbjct: 39 RKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRIQQLQDLLRHARVGQAPKARG--- 95 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--SSPIARALIGKELGDIISVNAP 144 V + + G ++ + ++G++E S L + SS I +A++G + G I +P Sbjct: 96 VVEPGVVVTARIGGSERRF-LLGNREIAHTSSLATYSESSAIGQAILGLKEGSEIECKSP 154 Query: 145 GG 146 G Sbjct: 155 TG 156 >gi|153010033|ref|YP_001371248.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] gi|151561921|gb|ABS15419.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] Length = 156 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 + + D + FG TV L + G + + IVG+ EAD +G +S +P+A L GK + Sbjct: 78 LSVPVPDSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPV 137 Query: 136 GDIISVN 142 GD++ +N Sbjct: 138 GDVVKIN 144 >gi|167565571|ref|ZP_02358487.1| regulator of nucleoside diphosphate kinase [Burkholderia oklahomensis EO147] Length = 132 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMTWTIVYPDAANFEQGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I ++++ Sbjct: 90 VGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122 >gi|256426014|ref|YP_003126667.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588] gi|256040922|gb|ACU64466.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588] Length = 131 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA ++D ++ I + VS+ E NSG +++IV +AD++ +SI +P+ A Sbjct: 44 LNRAVIVDNESLPVGTIRLNSLVSVKEVNSGKVTDFRIVMPIDADIKQKKISILAPLGAA 103 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 LIG GD + P G K + +L V Sbjct: 104 LIGFRKGDEVEWKMPAGVKRFTVLNV 129 >gi|126458551|ref|YP_001075250.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106a] gi|134279304|ref|ZP_01766017.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 305] gi|167723223|ref|ZP_02406459.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei DM98] gi|167742194|ref|ZP_02414968.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 14] gi|167849216|ref|ZP_02474724.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei B7210] gi|167906159|ref|ZP_02493364.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei NCTC 13177] gi|167914483|ref|ZP_02501574.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 112] gi|217418762|ref|ZP_03450269.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 576] gi|237508824|ref|ZP_04521539.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei MSHR346] gi|242312653|ref|ZP_04811670.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106b] gi|254300234|ref|ZP_04967680.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 406e] gi|126232319|gb|ABN95732.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106a] gi|134249723|gb|EBA49804.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 305] gi|157810014|gb|EDO87184.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 406e] gi|217398066|gb|EEC38081.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 576] gi|235001029|gb|EEP50453.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei MSHR346] gi|242135892|gb|EES22295.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106b] Length = 132 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDMAWTIVYPDAANFEQGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I+++++ Sbjct: 90 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122 >gi|28572840|ref|NP_789620.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27] gi|28410973|emb|CAD67358.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27] Length = 162 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R I K I +AR+ GDL EN Y AAKE Q EGR+ +L++++ A V G Sbjct: 29 RKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRIQQLQDLLRHARVGQAPKARG--- 85 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--SSPIARALIGKELGDIISVNAP 144 V + + G ++ + ++G++E S L + SS I +A++G + G I +P Sbjct: 86 VVEPGVVVTARIGGSERRF-LLGNREIAHTSSLATYSESSAIGQAILGLKEGSEIECKSP 144 Query: 145 GG 146 G Sbjct: 145 TG 146 >gi|192360518|ref|YP_001983831.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus Ueda107] gi|190686683|gb|ACE84361.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus Ueda107] Length = 180 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 46 NAEYQAAKELQNLNEGRMAELENI-ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 N++YQ +L N+ AE +I I RA ++ + + D +A + V+ + +SG++K Sbjct: 65 NSDYQRLVQLIEDNDSPAAEALDIEIGRATLVADAQLPADVVAMDSEVTFEDLDSGEQKT 124 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 Q+V +A+V +SI SP+ ALIG +G I P G+ Sbjct: 125 IQLVFPAQANVDQLKISILSPVGSALIGLRIGSSIDWPVPQGK 167 >gi|114706677|ref|ZP_01439578.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi HTCC2506] gi|114538069|gb|EAU41192.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi HTCC2506] Length = 156 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + FG V+ +E++ G K+++ IVG EAD + G +S SP+AR L+GK +G+ + V A Sbjct: 89 VQFGTRVT-IERDDGQKQSFTIVGIDEADPRDGYLSYLSPLARNLVGKNVGEEVKVGASN 147 Query: 146 GE 147 E Sbjct: 148 AE 149 >gi|227877960|ref|ZP_03995964.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] gi|227862430|gb|EEJ69945.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] Length = 85 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 ++ G TV L + + + Y++VG EAD+ +G VS SP+ +A++ KE G +V AP Sbjct: 14 KVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAIMKKEAGTTATVAAP 73 Query: 145 GGEKTYEILQV 155 GE I++V Sbjct: 74 VGEYQVTIVEV 84 >gi|23501445|ref|NP_697572.1| transcription elongation factor GreA domain-containing protein [Brucella suis 1330] gi|161618529|ref|YP_001592416.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|254703897|ref|ZP_05165725.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686] gi|261754547|ref|ZP_05998256.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686] gi|23347347|gb|AAN29487.1| transcription elongation factor GreA domain protein [Brucella suis 1330] gi|161335340|gb|ABX61645.1| Transcription elongation factor greA [Brucella canis ATCC 23365] gi|261744300|gb|EEY32226.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686] Length = 156 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S Sbjct: 65 DLRYWMARRETAELSVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124 Query: 123 SSPIARALIGKELGDIISVN 142 +P++ L GK +GD++ +N Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144 >gi|316932410|ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315600124|gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 134 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%) Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 + +RP I +A G L+E A Y A E L + RA V S Sbjct: 6 RTQRPPITLRSRDAERLGQLAEVAAQRYPATAEF----------LAGEVARASVAPDSAP 55 Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + + ++ + +G +K+ +V EADV++G +SI +PI ALIG +G IS Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISF 115 Query: 142 NAPGGEK 148 P GE+ Sbjct: 116 ETPSGER 122 >gi|320008884|gb|ADW03734.1| transcription elongation factor GreA [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTPEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ A+V + G + G V++ D ++ +E AD+++ S Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDPDDTVTFLLASREYASADIET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ + GK GD P G+K Sbjct: 128 SPLGTGVNGKRTGDEAEYELPNGKK 152 >gi|229817907|ref|ZP_04448189.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM 20098] gi|229784807|gb|EEP20921.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM 20098] Length = 114 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 7/105 (6%) Query: 44 SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103 SEN Y AA+E Q +N+GR+ EL + A++ ++ ++ G+ V+L +G +K Sbjct: 1 SENGGYHAAREAQRVNQGRIEELTFKLRHAKI--LTAPPAGKVGDGSLVTL--DMNGREK 56 Query: 104 NYQIVGDQEADVQS--GLVSISSPIARALIGKELGDIISVNAPGG 146 + ++G + + + ++S SPI A+ G ++GD +S AP G Sbjct: 57 VF-VLGSHDLAIATDQAIISPESPIGAAIYGAKVGDTVSYKAPNG 100 >gi|118594647|ref|ZP_01551994.1| transcription elongation factor, putative [Methylophilales bacterium HTCC2181] gi|118440425|gb|EAV47052.1| transcription elongation factor, putative [Methylophilales bacterium HTCC2181] Length = 166 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 +++ FGA + L E G+ ++Y+IVG+ EAD+ +S SP+A++++G LGD +++ Sbjct: 92 NKVLFGALIEL-EDEKGETESYEIVGEDEADLALRKISYVSPLAKSVMGNSLGDEVTLIK 150 Query: 144 PGGEKTYEILQVLW 157 P T I + + Sbjct: 151 PTATVTLTIKNITY 164 >gi|260566855|ref|ZP_05837325.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260156373|gb|EEW91453.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] Length = 156 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S Sbjct: 65 DLRYWMARRETAELSVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124 Query: 123 SSPIARALIGKELGDIISVN 142 +P++ L GK +GD++ +N Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144 >gi|17987660|ref|NP_540294.1| transcription elongation factor GREB [Brucella melitensis bv. 1 str. 16M] gi|148560110|ref|YP_001258556.1| transcription elongation factor GreA domain-containing protein [Brucella ovis ATCC 25840] gi|163842833|ref|YP_001627237.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|225627062|ref|ZP_03785100.1| Transcription elongation factor greA [Brucella ceti str. Cudo] gi|225852085|ref|YP_002732318.1| Transcription elongation factor greA [Brucella melitensis ATCC 23457] gi|254693324|ref|ZP_05155152.1| Transcription elongation factor greA [Brucella abortus bv. 3 str. Tulya] gi|254701352|ref|ZP_05163180.1| Transcription elongation factor greA [Brucella suis bv. 5 str. 513] gi|254707727|ref|ZP_05169555.1| Transcription elongation factor greA [Brucella pinnipedialis M163/99/10] gi|254709691|ref|ZP_05171502.1| Transcription elongation factor greA [Brucella pinnipedialis B2/94] gi|254712888|ref|ZP_05174699.1| Transcription elongation factor greA [Brucella ceti M644/93/1] gi|254716758|ref|ZP_05178569.1| Transcription elongation factor greA [Brucella ceti M13/05/1] gi|256031182|ref|ZP_05444796.1| Transcription elongation factor greA [Brucella pinnipedialis M292/94/1] gi|256044265|ref|ZP_05447169.1| Transcription elongation factor greA [Brucella melitensis bv. 1 str. Rev.1] gi|256060689|ref|ZP_05450853.1| Transcription elongation factor greA [Brucella neotomae 5K33] gi|256113099|ref|ZP_05453976.1| Transcription elongation factor greA [Brucella melitensis bv. 3 str. Ether] gi|256159272|ref|ZP_05457075.1| Transcription elongation factor greA [Brucella ceti M490/95/1] gi|256254589|ref|ZP_05460125.1| Transcription elongation factor greA [Brucella ceti B1/94] gi|256264405|ref|ZP_05466937.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 2 str. 63/9] gi|256368997|ref|YP_003106503.1| transcription elongation factor GreA domain protein [Brucella microti CCM 4915] gi|260168317|ref|ZP_05755128.1| transcription elongation factor GreA domain protein [Brucella sp. F5/99] gi|260563619|ref|ZP_05834105.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|261213571|ref|ZP_05927852.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str. Tulya] gi|261218555|ref|ZP_05932836.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1] gi|261221763|ref|ZP_05936044.1| GreA/GreB family elongation factor [Brucella ceti B1/94] gi|261315220|ref|ZP_05954417.1| GreA/GreB family elongation factor [Brucella pinnipedialis M163/99/10] gi|261317221|ref|ZP_05956418.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94] gi|261320596|ref|ZP_05959793.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1] gi|261324679|ref|ZP_05963876.1| GreA/GreB family elongation factor [Brucella neotomae 5K33] gi|261751889|ref|ZP_05995598.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513] gi|261757777|ref|ZP_06001486.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|265988260|ref|ZP_06100817.1| GreA/GreB family elongation factor [Brucella pinnipedialis M292/94/1] gi|265990676|ref|ZP_06103233.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str. Rev.1] gi|265994508|ref|ZP_06107065.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str. Ether] gi|265997727|ref|ZP_06110284.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1] gi|294851925|ref|ZP_06792598.1| transcription elongation factor regulatory protein [Brucella sp. NVSL 07-0026] gi|17983373|gb|AAL52558.1| transcription elongation factor greb [Brucella melitensis bv. 1 str. 16M] gi|148371367|gb|ABQ61346.1| transcription elongation factor GreA domain protein [Brucella ovis ATCC 25840] gi|163673556|gb|ABY37667.1| Transcription elongation factor greA [Brucella suis ATCC 23445] gi|225617897|gb|EEH14941.1| Transcription elongation factor greA [Brucella ceti str. Cudo] gi|225640450|gb|ACO00364.1| Transcription elongation factor greA [Brucella melitensis ATCC 23457] gi|255999155|gb|ACU47554.1| transcription elongation factor GreA domain protein [Brucella microti CCM 4915] gi|260153635|gb|EEW88727.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|260915178|gb|EEX82039.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str. Tulya] gi|260920347|gb|EEX87000.1| GreA/GreB family elongation factor [Brucella ceti B1/94] gi|260923644|gb|EEX90212.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1] gi|261293286|gb|EEX96782.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1] gi|261296444|gb|EEX99940.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94] gi|261300659|gb|EEY04156.1| GreA/GreB family elongation factor [Brucella neotomae 5K33] gi|261304246|gb|EEY07743.1| GreA/GreB family elongation factor [Brucella pinnipedialis M163/99/10] gi|261737761|gb|EEY25757.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|261741642|gb|EEY29568.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513] gi|262552195|gb|EEZ08185.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1] gi|262765621|gb|EEZ11410.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str. Ether] gi|263001460|gb|EEZ14035.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str. Rev.1] gi|263094699|gb|EEZ18478.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 2 str. 63/9] gi|264660457|gb|EEZ30718.1| GreA/GreB family elongation factor [Brucella pinnipedialis M292/94/1] gi|294820514|gb|EFG37513.1| transcription elongation factor regulatory protein [Brucella sp. NVSL 07-0026] gi|326408580|gb|ADZ65645.1| Transcription elongation factor greA [Brucella melitensis M28] gi|326538299|gb|ADZ86514.1| transcription elongation factor greA [Brucella melitensis M5-90] Length = 156 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S Sbjct: 65 DLRYWMARRETAELSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124 Query: 123 SSPIARALIGKELGDIISVN 142 +P++ L GK +GD++ +N Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144 >gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum SK141] gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium ATCC 33035] gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum SK141] gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium ATCC 33035] Length = 173 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 12/129 (9%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 + RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A + G Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTERGAVQEG- 84 Query: 85 RIAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGD 137 +A +V V N GDK + + ++G + A D+++ S SP+ A++G + G+ Sbjct: 85 -VAHTGSVVHVYYN-GDKDDKETFLIGTRAAASDNKDLET--YSEQSPLGAAILGAQEGE 140 Query: 138 IISVNAPGG 146 AP G Sbjct: 141 TREYTAPNG 149 >gi|83716392|ref|YP_439713.1| nucleoside diphosphate kinase regulator [Burkholderia thailandensis E264] gi|257142852|ref|ZP_05591114.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis E264] gi|83650217|gb|ABC34281.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis E264] Length = 132 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGWLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I+++++ Sbjct: 90 VGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122 >gi|329847111|ref|ZP_08262139.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Asticcacaulis biprosthecum C19] gi|328842174|gb|EGF91743.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Asticcacaulis biprosthecum C19] Length = 159 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 + FG TV+ +E+ G + ++IVG+ EAD + G +S SP+A+AL+GK L D + ++ Sbjct: 94 VVFGCTVT-IERADGRTQTFRIVGEDEADPKQGSISYVSPLAQALMGKTLDDEVRLD 149 >gi|21111854|gb|AAM40146.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 135 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N A L + + RA V+ + GD + + + ++ G++ +V EADVQ Sbjct: 26 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 85 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 +S+ +P+ AL+G +G I APGG Sbjct: 86 RISVLAPVGTALLGLSVGQSIDWRAPGG 113 >gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita DSM 44233] gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita DSM 44233] Length = 163 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL RP I I+ R GDL EN Y AA++ Q E R+ L Sbjct: 9 LTQEAHDRLKHELD-ELVLHRPVIAAEINARREEGDLKENGGYHAARDEQAKQESRIRHL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V ++ + G V++ D K ++G +E V + S S Sbjct: 68 QELLRDAQV-GVAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVHGSMPVYSPQS 126 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ +A++G G+ P G Sbjct: 127 PLGQAILGASRGESREYTLPNG 148 >gi|77747771|ref|NP_636222.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992915|ref|YP_001904925.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. B100] gi|167734675|emb|CAP52885.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris] Length = 143 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N A L + + RA V+ + GD + + + ++ G++ +V EADVQ Sbjct: 34 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 93 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 +S+ +P+ AL+G +G I APGG Sbjct: 94 RISVLAPVGTALLGLSVGQSIDWRAPGG 121 >gi|167572677|ref|ZP_02365551.1| regulator of nucleoside diphosphate kinase [Burkholderia oklahomensis C6786] Length = 132 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMAWTIVYPDAANFEQGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I ++++ Sbjct: 90 VGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122 >gi|330888755|gb|EGH21416.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori str. 301020] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V+ + +S +++ G+ V+ ++ + +++ +VG+ +AD GL++ SP+ RALIG Sbjct: 81 AQVV-TTAVSTEKVQIGSWVTFADEEN-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138 Query: 133 KELGDIISVNAPGGEKTYEIL 153 + GD + P G ++ EIL Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159 >gi|298488825|ref|ZP_07006852.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156666|gb|EFH97759.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RA Sbjct: 78 LQSAQVV-TTAVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153 LIG + GD + P G ++ EIL Sbjct: 136 LIGAQKGDEVVWEPPAGNQSIEIL 159 >gi|167578153|ref|ZP_02371027.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis TXDOH] gi|167616284|ref|ZP_02384919.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis Bt4] Length = 132 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G G+ + V PGG + T +I+++++ Sbjct: 90 VGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122 >gi|331089360|ref|ZP_08338260.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405423|gb|EGG84958.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium 3_1_46FAA] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 34/48 (70%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53 +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK Sbjct: 4 KLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAK 51 >gi|254389866|ref|ZP_05005089.1| transcription elongation factor greA [Streptomyces clavuligerus ATCC 27064] gi|294814692|ref|ZP_06773335.1| Transcription elongation factor [Streptomyces clavuligerus ATCC 27064] gi|326443074|ref|ZP_08217808.1| transcription elongation factor GreA [Streptomyces clavuligerus ATCC 27064] gi|197703576|gb|EDY49388.1| transcription elongation factor greA [Streptomyces clavuligerus ATCC 27064] gi|294327291|gb|EFG08934.1| Transcription elongation factor [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEHLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A S SP Sbjct: 71 TQLLDSAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASSNIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK++GD P G Sbjct: 130 LGTGVNGKKVGDTAEYELPNG 150 >gi|145295136|ref|YP_001137957.1| transcription elongation factor GreA [Corynebacterium glutamicum R] gi|140845056|dbj|BAF54055.1| hypothetical protein [Corynebacterium glutamicum R] Length = 174 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++ ++ + + G +A G+ V + + + DK+ + I A L Sbjct: 63 RIKQISELLANSTTEREGIIEG--VANVGSVVHVYYDGDENDKETFLIGTRAGASENPDL 120 Query: 120 VSIS--SPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G + GD AP G Sbjct: 121 ETYSEQSPLGAAILGAQEGDTRQYTAPNG 149 >gi|284989519|ref|YP_003408073.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM 43160] gi|284062764|gb|ADB73702.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM 43160] Length = 167 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP + I+ R GDL EN Y AAK+ Q E R+ +L Sbjct: 14 LTQEAHDRLRAELD-QLVAGRPAMAAEINARREEGDLRENGGYHAAKDEQGKQEARIRQL 72 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 E+++ +A V D T + A G +++ + D + + ++G +E +GL S S Sbjct: 73 EDLLRKARVGDAPTTA-THAATGTVITIRFRGEDDTEKF-LLGSREIAGTTGLQVYSPES 130 Query: 125 PIARALIGKELGDIISVNAPGG 146 + A++G E G ++ AP G Sbjct: 131 ALGSAILGAEPGTTVTYQAPNG 152 >gi|66047490|ref|YP_237331.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae B728a] gi|63258197|gb|AAY39293.1| Prokaryotic transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae B728a] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 +S +++ G+ V+ ++ +++ +VG+ +AD +GL++ SP+ RALIG + GD + Sbjct: 87 AVSTEKVQIGSWVTFADEQD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEV 145 Query: 140 SVNAPGGEKTYEIL 153 P G+++ E+L Sbjct: 146 LWQRPAGDQSIEVL 159 >gi|315500720|ref|YP_004089521.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB 48] gi|315418732|gb|ADU15370.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB 48] Length = 159 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + +++ FG TV + ++ G + ++IVG+ EA+ + G +S SP+ARAL+G+E GD Sbjct: 90 NANKVVFGCTVEIA-RDDGRVQTFKIVGEDEANPKVGKISYVSPLARALLGREAGD 144 >gi|307140092|ref|ZP_07499448.1| transcription elongation factor GreB [Escherichia coli H736] Length = 68 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 3 IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV 60 >gi|306842173|ref|ZP_07474842.1| transcription elongation factor GREB [Brucella sp. BO2] gi|306287760|gb|EFM59191.1| transcription elongation factor GREB [Brucella sp. BO2] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 + + D + FG TV L + G + + IVG+ EAD G +S +P++ L GK + Sbjct: 78 LSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPVSILLFGKPV 137 Query: 136 GDIISVN 142 GD++ +N Sbjct: 138 GDVVKIN 144 >gi|306845170|ref|ZP_07477746.1| transcription elongation factor GREB [Brucella sp. BO1] gi|306274329|gb|EFM56136.1| transcription elongation factor GREB [Brucella sp. BO1] Length = 156 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 65 ELENIITRAEVIDISTMS--GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S Sbjct: 65 DLRYWMARRETAELSVPAPGSDVVRFGMTVELENLDDGSTRCWTIVGEDEADPSRGKISH 124 Query: 123 SSPIARALIGKELGDIISVN 142 +P++ L GK +GD++ +N Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144 >gi|197123173|ref|YP_002135124.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] gi|196173022|gb|ACG73995.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] Length = 149 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65 +T +GF ++ E E RPRI+ + A A GD SENAEY K+L+ L+ R+ Sbjct: 8 ITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 L + V++ R FGA V+ VE+ G ++ ++VG E DV +G Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQERRVRLVGPDEFDVAAG 118 >gi|330969544|gb|EGH69610.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 +S +++ G+ V+ ++ +++ +VG+ +AD +GL++ SP+ RALIG + GD + Sbjct: 87 AVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEV 145 Query: 140 SVNAPGGEKTYEIL 153 P G+++ E+L Sbjct: 146 LWQRPAGDQSIEVL 159 >gi|19552211|ref|NP_600213.1| transcription elongation factor GreA [Corynebacterium glutamicum ATCC 13032] gi|62389876|ref|YP_225278.1| transcription elongation factor GreA [Corynebacterium glutamicum ATCC 13032] gi|21323753|dbj|BAB98379.1| Transcription elongation factor [Corynebacterium glutamicum ATCC 13032] gi|41325211|emb|CAF19692.1| Transcription elongation factor [Corynebacterium glutamicum ATCC 13032] Length = 174 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++ ++ + + G +A G+ V + + + DK+ + I A L Sbjct: 63 RIKQISELLANSTTEREGIIEG--VANVGSVVHVYYDGDENDKETFLIGTRAGASENPDL 120 Query: 120 VSIS--SPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G + GD AP G Sbjct: 121 ETYSEQSPLGAAILGAQEGDTRQYTAPNG 149 >gi|289628327|ref|ZP_06461281.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650125|ref|ZP_06481468.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 2250] gi|330869003|gb|EGH03712.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 165 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RALIG Sbjct: 81 AQVV-TTAISTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138 Query: 133 KELGDIISVNAPGGEKTYEIL 153 + GD + P G ++ EIL Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159 >gi|71735306|ref|YP_276410.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482138|ref|ZP_05636179.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71555859|gb|AAZ35070.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265608|dbj|BAF32869.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola] gi|320322617|gb|EFW78710.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. B076] gi|320330598|gb|EFW86577.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] gi|330873441|gb|EGH07590.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] gi|330987544|gb|EGH85647.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011394|gb|EGH91450.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RALIG Sbjct: 81 AQVV-TTAVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138 Query: 133 KELGDIISVNAPGGEKTYEIL 153 + GD + P G ++ EIL Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159 >gi|296158435|ref|ZP_06841266.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295891379|gb|EFG71166.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 136 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV++ SG+ + +V AD G +++ SP Sbjct: 34 LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G + G+ I P G EK ++ ++L+ Sbjct: 94 AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126 >gi|91784350|ref|YP_559556.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] gi|91688304|gb|ABE31504.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 136 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV++ SG+ + +V AD G +++ SP Sbjct: 34 LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G + G+ I P G EK ++ ++L+ Sbjct: 94 AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126 >gi|254718708|ref|ZP_05180519.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. 83/13] gi|265983683|ref|ZP_06096418.1| GreA/GreB family elongation factor [Brucella sp. 83/13] gi|306837756|ref|ZP_07470623.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. NF 2653] gi|264662275|gb|EEZ32536.1| GreA/GreB family elongation factor [Brucella sp. 83/13] gi|306407165|gb|EFM63377.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. NF 2653] Length = 156 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65 VTS G +I EL R+ ++EA G+ S A + +++L+ R AE Sbjct: 28 VTSAGLKQIDDEL--------ARLQHDLAEANIAGERS--AVARISRDLRYWTARRETAE 77 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + D + FG TV L + G + + IVG+ EAD G +S +P Sbjct: 78 LS----------VPAPDSDVVRFGMTVELENLDDGSIRRWTIVGEDEADPSRGKISHVAP 127 Query: 126 IARALIGKELGDIISVN 142 ++ L GK +GD++ +N Sbjct: 128 VSILLFGKPVGDVVKIN 144 >gi|296118180|ref|ZP_06836761.1| transcription elongation factor GreA [Corynebacterium ammoniagenes DSM 20306] gi|295968738|gb|EFG81982.1| transcription elongation factor GreA [Corynebacterium ammoniagenes DSM 20306] Length = 172 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A G Sbjct: 27 RPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTEREGIQDG-VA 85 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLVSISSPIARALIGKELGDIISV 141 A G+ V + + K ++G + A D+++ S SP+ A++G + G+ Sbjct: 86 AIGSVVHVYYNGDEEDKETFLIGTRAAASDNKDLET--YSEQSPLGAAILGAQEGETREY 143 Query: 142 NAPGG 146 AP G Sbjct: 144 TAPNG 148 >gi|26987412|ref|NP_742837.1| GreA/GreB family elongation factor [Pseudomonas putida KT2440] gi|24982070|gb|AAN66301.1|AE016258_7 transcription elongation factor, putative [Pseudomonas putida KT2440] Length = 165 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V V+ ++ Q+VG+ EAD GL++ SP+ RA Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDAQD-QEQVVQLVGEDEADAGHGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L+G GD + P GE+ E++++L Sbjct: 136 LLGAGPGDEVVWRRPVGEQVIEVVEIL 162 >gi|330952915|gb|EGH53175.1| transcription elongation factor GreA/GreB [Pseudomonas syringae Cit 7] Length = 165 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 +GL++ SP+ RALIG + GD + P G+++ E+L Sbjct: 121 AANGLINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159 >gi|319787977|ref|YP_004147452.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis 11-1] gi|317466489|gb|ADV28221.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis 11-1] Length = 143 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAEV+ + D + + V + SG+K +V EADV+ G VS+ +P+ A Sbjct: 45 LNRAEVLPPEQVPADVVTMHSQVECEDIASGEKHVLTLVYPNEADVEKGRVSVLAPVGSA 104 Query: 130 LIGKELGDIISVNAPGG 146 L+G +G I APGG Sbjct: 105 LLGLSVGQSIDWQAPGG 121 >gi|213622210|ref|ZP_03374993.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 42 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 31/40 (77%) Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 3 LISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 42 >gi|187924646|ref|YP_001896288.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN] gi|187715840|gb|ACD17064.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++D + + + + +LV++ SG++ + +V AD G +++ SP Sbjct: 34 LDDVLERAVIVDSREIPANVVTMNSQATLVDETSGEQMTWTVVYPPNADFAHGRLNVFSP 93 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G + G+ I P G EK ++ ++L+ Sbjct: 94 AGIALLGAKRGERIRFTPPSGTEKVLKLEKILY 126 >gi|313497038|gb|ADR58404.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V V+ ++ Q+VG+ EAD GL++ SP+ RA Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDAQD-QEQLVQLVGEDEADAGRGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L+G GD + P GE+ E++++L Sbjct: 136 LLGAGPGDEVVWQRPVGEQVIEVVEIL 162 >gi|330961596|gb|EGH61856.1| transcription elongation factor GreB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 S +++ G+ V+ +++ +++ +VG+ +AD +GL++ SP+ RALIG + GD + Sbjct: 89 STEKVQIGSWVTFADEDD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEVVW 147 Query: 142 NAPGGEKTYEIL 153 P G+ + E+L Sbjct: 148 QRPAGDLSIEVL 159 >gi|302187999|ref|ZP_07264672.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae 642] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 GL++ SP+ RALIG + GD + P G+++ E+L Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159 >gi|239943845|ref|ZP_04695782.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL 15998] gi|239990301|ref|ZP_04710965.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL 11379] gi|291447308|ref|ZP_06586698.1| transcription elongation factor [Streptomyces roseosporus NRRL 15998] gi|291350255|gb|EFE77159.1| transcription elongation factor [Streptomyces roseosporus NRRL 15998] Length = 165 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A + S SP Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLLASREYASTEIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK GD P G Sbjct: 130 LGLGVNGKRTGDDADYELPNG 150 >gi|295677010|ref|YP_003605534.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295436853|gb|ADG16023.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 134 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 42 DLSENAEYQAAK-ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 D++ +Y AA +LQ++ L++++ RA ++D + D + + +L++ SG Sbjct: 14 DVTRLEKYAAANAKLQHM-------LDDVLERAVIVDSHDIPADVVTMNSQATLIDTASG 66 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 ++ + +V AD G +++ SP AL+G G+ I P G++ Sbjct: 67 EQMTWTVVYPPNADFAQGRLNVFSPAGLALLGARRGESIRFTPPSGDQ 114 >gi|147676876|ref|YP_001211091.1| hypothetical protein PTH_0541 [Pelotomaculum thermopropionicum SI] gi|146272973|dbj|BAF58722.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E +NL E + L+ +I A I+ + G+ V + + + Y IV + Sbjct: 42 EFENLIENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVNPFYS 101 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +V+ G +S SP+ ++L+ K++GD + V APGG Y+I Sbjct: 102 EVREGHISFLSPVGKSLLLKKVGDEVEVKAPGGVFRYKI 140 >gi|297617314|ref|YP_003702473.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] gi|297145151|gb|ADI01908.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] Length = 150 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 6/102 (5%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE-KNSGDKKN--YQIVGD 110 E + L E + +++ +I + + S+ +G+++ F S VE +N DK+ Y+I+ Sbjct: 42 EFEILLENYIKQVDELIRK---VKKSSKAGNKLPFVTIGSEVEIQNLSDKETHKYRIITP 98 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 V+ G +S SP+ ++L+ +++GD+I V APGG Y+I Sbjct: 99 FRGSVKDGDISYLSPVGKSLLLRKVGDVIEVKAPGGIFHYKI 140 >gi|325105687|ref|YP_004275341.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] gi|324974535|gb|ADY53519.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] Length = 126 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 54/99 (54%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 NL++ +LE + A+V+ + + GD + + V + ++ +Q+V QEA+++ Sbjct: 25 NLSDFNKQKLEKELNEAKVLADAELPGDVVRLESVVKIESVDNNKTFTFQLVMPQEANMK 84 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ +PI AL+G + G I+ P G K ++I+ V Sbjct: 85 KQKLSVFAPIGIALLGYQTGTIVEWEMPDGVKKFKIIDV 123 >gi|149279968|ref|ZP_01886094.1| nucleoside diphosphate kinase regulator protein, putative [Pedobacter sp. BAL39] gi|149229348|gb|EDM34741.1| nucleoside diphosphate kinase regulator protein, putative [Pedobacter sp. BAL39] Length = 129 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 48 EYQAAKEL---QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 +YQ K N + G M+ L ++RA ++ D I +TV + ++++G+ Sbjct: 15 DYQLLKPYFTKTNPHAGEMS-LSAELSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIME 73 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IV Q A+++ +S+ +PIA ALIG GD + P G K + I +V Sbjct: 74 LIIVLPQHANIKEKKISVLTPIAAALIGFRQGDAVQWKVPAGLKNFRITEV 124 >gi|163757146|ref|ZP_02164248.1| transcription elongation factor [Kordia algicida OT-1] gi|161322874|gb|EDP94221.1| transcription elongation factor [Kordia algicida OT-1] Length = 139 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 40 YGDL-SENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90 YG L E EY K + N++ + + +L + A ++D S M D I F + Sbjct: 3 YGSLILEKKEYVYLKRILNISGYTGDFEVQNSLLQLNKELKNALIVDESEMPNDIIRFNS 62 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 VS+ +N+ KK QIV E D++ +SI +P+ +LIG+ D I + GE+ Sbjct: 63 IVSISAENNW-KKTLQIVIPTEVDIEKNKISILTPLGASLIGRSSNDNIQCTSNSGEQ 119 >gi|154246865|ref|YP_001417823.1| transcription elongation factor regulatory protein [Xanthobacter autotrophicus Py2] gi|154160950|gb|ABS68166.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2] Length = 158 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 + FGATV+ + + G ++ ++IVG+ EAD G VS SP+A+AL+ K +GD+ Sbjct: 93 VQFGATVT-ISREDGRRQVFRIVGEDEADPAKGSVSYVSPLAKALMSKVVGDV 144 >gi|330873471|gb|EGH07620.1| transcription elongation factor GreB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 165 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP+ AL+G + GD + Sbjct: 88 LSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSPLGSALLGAQKGDEVM 146 Query: 141 VNAPGGEKTYEIL 153 P G++T E+L Sbjct: 147 WKRPAGDQTIEVL 159 >gi|115265559|dbj|BAF32821.1| transcription elongation factor [Pseudomonas syringae pv. actinidiae] gi|330965293|gb|EGH65553.1| transcription elongation factor GreB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 165 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP+ AL+G + GD + Sbjct: 88 LSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSPLGSALLGAQKGDEVM 146 Query: 141 VNAPGGEKTYEIL 153 P G++T E+L Sbjct: 147 WKRPAGDQTIEVL 159 >gi|158426269|ref|YP_001527561.1| transcription elongation factor regulatory protein [Azorhizobium caulinodans ORS 571] gi|158333158|dbj|BAF90643.1| transcription elongation factor protein [Azorhizobium caulinodans ORS 571] Length = 159 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + FG TV+L+ ++ ++ ++IVG+ EAD G VS SP+A AL+GK +GD+ V Sbjct: 94 VQFGVTVTLLREDD-RRQTFRIVGEDEADPAQGSVSYVSPLAAALMGKGVGDVALV 148 >gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae NCTC 13129] gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae] Length = 173 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ I+ + + G Sbjct: 27 HRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEILANSTTERAGIVEG-- 84 Query: 86 IAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGDI 138 +A +V V N GDK + + ++G + A D+++ S SP+ A++G + G+ Sbjct: 85 VAHIGSVVHVYYN-GDKNDKETFLIGTRAAASDNKDLET--YSEQSPLGAAVVGAQEGET 141 Query: 139 ISVNAPGG 146 +AP G Sbjct: 142 RQYSAPNG 149 >gi|66575033|gb|AAY50443.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 135 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N A L + + RA V+ + GD + + + ++ G++ +V EADVQ Sbjct: 26 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 85 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 +S+ +P AL+G +G I APGG Sbjct: 86 RISVLAPAGTALLGLSVGQSIDWRAPGG 113 >gi|148545953|ref|YP_001266055.1| GreA/GreB family elongation factor [Pseudomonas putida F1] gi|148510011|gb|ABQ76871.1| GreA/GreB family elongation factor [Pseudomonas putida F1] Length = 165 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V V+ + ++ ++VG+ EAD GL++ SP+ RA Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDTHD-QEQVVRLVGEDEADAGHGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L+G GD + P GE+ E++++L Sbjct: 136 LLGAGPGDEVVWRRPVGEQVIEVVEIL 162 >gi|77761289|ref|YP_244463.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 143 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N A L + + RA V+ + GD + + + ++ G++ +V EADVQ Sbjct: 34 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 93 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 +S+ +P AL+G +G I APGG Sbjct: 94 RISVLAPAGTALLGLSVGQSIDWRAPGG 121 >gi|296447424|ref|ZP_06889349.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] gi|296255044|gb|EFH02146.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] Length = 155 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + FG V +VE G +++Y++VG+ EAD GL+ +P+A+ L+GK +GD V Sbjct: 90 VRFGHRV-VVEDEKGQRRSYRLVGEDEADPSKGLIPYVAPLAKELLGKSVGDSAEV---- 144 Query: 146 GEKTYEILQV 155 G + IL + Sbjct: 145 GRHSATILDI 154 >gi|84394549|ref|ZP_00993255.1| transcription elongation factor GreA [Vibrio splendidus 12B01] gi|84374818|gb|EAP91759.1| transcription elongation factor GreA [Vibrio splendidus 12B01] Length = 51 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53 ++K+P+T +G K++ EL R + RP I AI EAR GDL ENAEY AA+ Sbjct: 1 MEKVPMTVRGAQKLRDELD-RLLKLRPIISAAIGEARELGDLKENAEYHAAR 51 >gi|323135884|ref|ZP_08070967.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242] gi|322398975|gb|EFY01494.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242] Length = 155 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 22/132 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G ++I++EL R+ I +A A D +A A ++L+ R + Sbjct: 30 VTPEGLEQIERELH--------RLHGEIEKATANDD--NHALALAQRDLRYWTARRAS-- 77 Query: 67 ENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 AEVI I+ S + FG V +VE G+++ +++VG+ EAD GL+ +P Sbjct: 78 ------AEVIRPIADHS--HVRFGHRV-VVELEGGERRAFRLVGEDEADPAKGLIPYVAP 128 Query: 126 IARALIGKELGD 137 +A AL+GK +GD Sbjct: 129 LATALMGKTVGD 140 >gi|288940256|ref|YP_003442496.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180] gi|288895628|gb|ADC61464.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180] Length = 137 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 52 AKELQNLNEGR-------MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 A+ L+NL E M ELE + RAEV+D M + ++ +TV ++ + Sbjct: 14 AERLENLIESLPRNAFPGMDELEAELARAEVVDPREMPPNVVSMNSTVRFRVMSTNEAFT 73 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 +V ++ D G +SI +P+ AL+G GD I PGG Sbjct: 74 LTLVYPKDMDASGGKISILAPVGSALLGLSSGDEIEWPKPGG 115 >gi|227832751|ref|YP_002834458.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC 700975] gi|262182759|ref|ZP_06042180.1| transcription elongation factor GreA [Corynebacterium aurimucosum ATCC 700975] gi|227453767|gb|ACP32520.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC 700975] Length = 173 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 12/129 (9%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 + RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ + + G Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANSTTERTAVQEG- 84 Query: 85 RIAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGD 137 +A +V V N GD+++ + ++G + A D+++ S SP+ AL+G G+ Sbjct: 85 -VAHIGSVVHVYYN-GDEEDRETFLIGTRAAASDNKDLET--YSEQSPLGAALLGAAEGE 140 Query: 138 IISVNAPGG 146 AP G Sbjct: 141 TREYTAPNG 149 >gi|332981932|ref|YP_004463373.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON] gi|332699610|gb|AEE96551.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON] Length = 138 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + G+TV + + + + +V E++ G +S SPI ++L+ K+ G+I+SV P Sbjct: 67 VIIGSTVKVRDIDDDYTITFTLVCPHESNPVKGCISYLSPIGKSLLLKKAGEIVSVVTPN 126 Query: 146 GEKTYEILQV 155 GE YEIL++ Sbjct: 127 GEVRYEILEI 136 >gi|254467874|ref|ZP_05081280.1| GreA/GreB family elongation factor [beta proteobacterium KB13] gi|207086684|gb|EDZ63967.1| GreA/GreB family elongation factor [beta proteobacterium KB13] Length = 164 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 +++ FGA V L+++N K +QIVG+ EAD++ +S SP+A+ LIG +GD Sbjct: 91 NNKVLFGAHVILIDENDEAYK-FQIVGEDEADIKQNKLSYVSPLAKELIGSLIGD 144 >gi|299783423|gb|ADJ41421.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Lactobacillus fermentum CECT 5716] Length = 69 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G ++ E + ++Y IVG+ E+D SG +S SP+A+ L+G ++GD + + P G Sbjct: 1 MGREITFQELPDEEPESYTIVGESESDPLSGKISNESPMAKGLLGHKVGDTVEIEIPNGS 60 Query: 148 KTYEILQV 155 +IL V Sbjct: 61 MKVKILSV 68 >gi|282865260|ref|ZP_06274312.1| transcription elongation factor GreA [Streptomyces sp. ACTE] gi|282559733|gb|EFB65283.1| transcription elongation factor GreA [Streptomyces sp. ACTE] Length = 165 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 7/151 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123 ++ A+V + G + G V++ D ++ +E D+++ S Sbjct: 71 TQLLEHAKVGEPPADDG-VVEPGMVVTIAFDGDPDDTLTFLLASREYATGDIET--YSPQ 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEIL 153 SP+ + GK +G+ P G+K T +IL Sbjct: 128 SPLGTGVNGKRMGEEAEYELPNGKKATVKIL 158 >gi|154499214|ref|ZP_02037592.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC 29799] gi|150272054|gb|EDM99280.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC 29799] Length = 163 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77 +LR +++++ A A A GD SENAE+Q A + + L N + + Sbjct: 31 QLRLKEEQD------AAQRASAMGDRSENAEWQIANDNIARYTVSIMSLVNTLDTYKKFS 84 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 S ++ G+T+ +V++ +I + + G +S ++P+ A++GK G Sbjct: 85 ASYTPTGKVMVGSTLKVVDRRHNSTLYIKIYPAGLGNAKIGAISTATPLGSAVLGKTAGT 144 Query: 138 IISVNAPGGEKTYEILQVL 156 + V AP G+ Y I +VL Sbjct: 145 EVIVKAPLGDIPYYIEEVL 163 >gi|182412842|ref|YP_001817908.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177840056|gb|ACB74308.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 204 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 13/133 (9%) Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS-----TMSGDRIAFGA 90 EA + GDL EN ++AAKE + +M L+ + R ++ T S D + G Sbjct: 49 EAHSQGDLRENFGFKAAKEAIRAVDRKMMALDRFVARNTFKEVDPAAWLTKSTDTLQLGH 108 Query: 91 TVSLVEKNSGDKKNYQIV------GDQEADVQSGLVSI--SSPIARALIGKELGDIISVN 142 ++ +++ K+ + G+ +D SGL + +SP+A A++G G V Sbjct: 109 VTTIEKQDVTTKRTHSFTFLVTTYGETASDPDSGLECLPHTSPLATAVLGLAAGAQTKVM 168 Query: 143 APGGEKTYEILQV 155 P GE ++ + Sbjct: 169 LPAGESLLTLISI 181 >gi|86132956|ref|ZP_01051546.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] gi|85816474|gb|EAQ37662.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] Length = 167 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 16/152 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTS G ++++EL + L E E + + L LN R L Sbjct: 31 VTSHGLTQLKEELSTLDNK--------------ISTLDETDERERRRALAVLNGKRNLLL 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I + A ++D G+ I FGATV+ QIVG EA V+ ++ ++PI Sbjct: 77 ERIQS-ARLLDHIKDEGE-IRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAPI 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK++ + + EK I + ++ Sbjct: 135 ARALIGKKVDETTTFQLGNEEKKLTIKNIAYV 166 >gi|299140453|ref|ZP_07033593.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597567|gb|EFI53765.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 125 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++E ++ ++RP + ++ A + GD SENA+YQ AK +GR+ L Sbjct: 22 ITPGGLERLKEEHQFLLNKDRPAVAVVVAWAASNGDRSENADYQYAKRRLRQIDGRIRHL 81 Query: 67 ENIITRAEVIDI----STMSGDRIAFGATV 92 + AEV+D S + ++ FGATV Sbjct: 82 SKRMEAAEVVDPEAPRSGLRATKVYFGATV 111 >gi|325528774|gb|EGD05833.1| GreA/GreB family elongation factor [Burkholderia sp. TJI49] Length = 132 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP Sbjct: 30 LDTLLERADIVRPDAIKANVVTMNSQITLLDETTQEQATWTIVYPDAANLELGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G + G ++ V P G EK ++ ++++ Sbjct: 90 VGMALLGTQRGQLVKVTQPSGAEKLMKVAEIVF 122 >gi|91975331|ref|YP_567990.1| transcription elongation factor GreA/GreB region [Rhodopseudomonas palustris BisB5] gi|91681787|gb|ABE38089.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB5] Length = 138 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RAE++ S + I G+ V+ + SG ++ +V + ADV++ +SI +PI A Sbjct: 44 IERAEILPDSQLLPGLIMMGSEVTFRDDISGQERCVTLVYPEAADVEANKISIITPIGAA 103 Query: 130 LIGKELGDIISVNAPGG 146 LIG G I PGG Sbjct: 104 LIGLSAGQTIEFQTPGG 120 >gi|300781602|ref|ZP_07091456.1| transcription elongation factor GreA [Corynebacterium genitalium ATCC 33030] gi|300533309|gb|EFK54370.1| transcription elongation factor GreA [Corynebacterium genitalium ATCC 33030] Length = 174 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I I+E R GDL ENA Y AA+E Q+ E R+ ++ ++ + + G + Sbjct: 28 RPAIAAEINERREEGDLKENAGYDAAREQQDQEEARIKQISELLANSTTERTGVVEGMAV 87 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISVNA 143 G+ V + + K ++G + A + S SP+ A++G G+ + A Sbjct: 88 -VGSVVHVYYNGDENDKETFLIGTRAASTDNKDLETYSEQSPLGAAVLGATEGETRTYTA 146 Query: 144 PGG 146 P G Sbjct: 147 PNG 149 >gi|254254276|ref|ZP_04947593.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia dolosa AUO158] gi|124898921|gb|EAY70764.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia dolosa AUO158] Length = 132 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++LV++ + ++ + IV A+++ G +++ Sbjct: 28 AMLDTLLERADIVRPDAIKANVVTMNSQITLVDEATQEQATWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + G ++ V P G EK ++ ++++ Sbjct: 88 SPVGMALLGTQRGQMVKVMQPSGIEKLMKVAEIVF 122 >gi|239833979|ref|ZP_04682307.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium LMG 3301] gi|239822042|gb|EEQ93611.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium LMG 3301] Length = 142 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 ++ L+ + E MAEL+ RA+V+ + D I G+TV N G ++ +V Sbjct: 29 SERLEEIAEELMAELD----RAKVVPAKRLPQDVIHMGSTVEF-RSNDGQQRRVALVYPG 83 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 EAD+ G +SI +PI ALIG G IS A G K +E+ Sbjct: 84 EADIAQGKISILTPIGTALIGLAPGQSISWTARDG-KQHEL 123 >gi|182436357|ref|YP_001824076.1| transcription elongation factor GreA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776981|ref|ZP_08236246.1| transcription elongation factor GreA [Streptomyces cf. griseus XylebKG-1] gi|178464873|dbj|BAG19393.1| putative transcription elongation factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657314|gb|EGE42160.1| transcription elongation factor GreA [Streptomyces cf. griseus XylebKG-1] Length = 165 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++++ EL R I I+ AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQEAYNQLKAELEHLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ A+V + G + G V++ + + D + + + A + S SP Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTLTFLLASREYASTEIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGG 146 + + GK GD P G Sbjct: 130 LGLGVNGKRTGDDADYELPNG 150 >gi|261341234|ref|ZP_05969092.1| regulator of nucleoside diphosphate kinase [Enterobacter cancerogenus ATCC 35316] gi|288316534|gb|EFC55472.1| regulator of nucleoside diphosphate kinase [Enterobacter cancerogenus ATCC 35316] Length = 136 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP+II +A L E EY + LNE EL+ RA++ +M D + Sbjct: 3 RPKIIINELDAERIDRLLEKPEYASLPVADALNE----ELD----RAQMCTPESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V+ +G++ +V + + +S+ +P+ AL+G GD I + PGG Sbjct: 55 TMNSQVTFRNLTTGEELTRTLVYPAQMTDSATQLSVLAPVGAALLGLRTGDTIHWDLPGG 114 Query: 147 EKTY-EILQVLW 157 T+ E+L +L+ Sbjct: 115 ASTHLEVLALLY 126 >gi|294665206|ref|ZP_06730505.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605029|gb|EFF48381.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 146 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ Sbjct: 39 AALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVL 98 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G +G I P G Sbjct: 99 APVGSALLGLSIGQSIDWRTPDG 121 >gi|149926906|ref|ZP_01915165.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105] gi|149824458|gb|EDM83676.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105] Length = 122 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/100 (23%), Positives = 46/100 (46%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 + LN EL + AE I + D + + ++VE SG + +A+ Sbjct: 9 ISKLNAPFPPELNAALDNAEFIKPQDIPADVVTMNSLFTIVETESGSTNKLMLCYPSDAE 68 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 G +S+ SP+ +L+G++ G + P GE+ + +++ Sbjct: 69 PAKGYISVLSPVGASLLGRKAGTVAQWATPNGEQHFAVVK 108 >gi|289675905|ref|ZP_06496795.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae FF5] Length = 123 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD Sbjct: 21 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 78 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 G ++ SP+ RALIG + GD + P G+++ E+L Sbjct: 79 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 117 >gi|294626142|ref|ZP_06704749.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599591|gb|EFF43721.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 146 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ Sbjct: 39 AALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVL 98 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G +G I P G Sbjct: 99 APVGSALLGLSVGQSIDWRTPDG 121 >gi|260062078|ref|YP_003195158.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata HTCC2501] gi|88783640|gb|EAR14811.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata HTCC2501] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 38 RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97 + Y +LS A Y A Q++ + + EL++ A+++D + M D + F + +++ + Sbjct: 17 KRYVNLS--AHYHDATLWQSI-QKLLTELDS----AKIVDEAEMQNDVVRFHSIITVTSE 69 Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 N G + Q+V E DV +SI +P+ AL G GD +S P G K I +V Sbjct: 70 N-GWSRRVQLVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSGPKRLRIEKV 126 >gi|302389044|ref|YP_003824865.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] gi|302199672|gb|ADL07242.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--- 108 A+EL++L + + ++ I+ + D + S + + V + + + + N+++V Sbjct: 41 ARELEHLLDNYIKFMDEFISSVQQEDTADESFPYVVINSRVQVQDIENDETYNFRVVLPS 100 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G+ +D + VS+ SP+ ++L+ K+ G+ + VNAPGG YEI + + Sbjct: 101 GNIASDPEIYSVSVLSPVGKSLLLKKPGEKVQVNAPGGMFLYEIKAIYF 149 >gi|85715886|ref|ZP_01046864.1| transcription elongation factor GreA/GreB region [Nitrobacter sp. Nb-311A] gi|85697293|gb|EAQ35173.1| transcription elongation factor GreA/GreB region [Nitrobacter sp. Nb-311A] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 18/119 (15%) Query: 55 LQNLNEGRMAE-------LENIITRAEVID-----ISTMSGDR-----IAFGATVSLVEK 97 L++L E M + L I RAE+I I +SG R + + V+ V+ Sbjct: 22 LRHLAEAAMEKYPTTAEFLAREIDRAEIIPADRSIIDDISGLRRKINLVTMQSEVTFVDD 81 Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155 SG+K+ +V ++ADV +G +SI SPI ALIG G I P GG ++ ++ V Sbjct: 82 ISGEKRKVVLVYPEDADVDAGKISILSPIGAALIGLSTGQSIEFQTPSGGWRSLTVMAV 140 >gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum DSM 44291] gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum DSM 44291] Length = 174 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I I+E R GDL ENA Y AA+E Q+ E R+ ++ I+ A + G + Sbjct: 28 RPVIAAEINERREEGDLKENAGYDAAREQQDQEEARIKQISEILANATTERSGVIEG--V 85 Query: 87 A-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISVN 142 A G+ V + K ++G + A + S +SP+ A++G G+ + + Sbjct: 86 AQVGSVVHVFYNGDESDKETFLIGTRAASTGNKDLETYSENSPLGAAVVGASEGETRTYS 145 Query: 143 APGG 146 AP G Sbjct: 146 APNG 149 >gi|148550773|ref|YP_001260212.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148503192|gb|ABQ71445.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 137 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I SEA DL+ +A A L +++ + EL RA + + GD + Sbjct: 9 RPPIHMIDSEADILADLATSA----ATRLPQVSQLLLEEL----GRATIHKADRIPGDIV 60 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG-DIISVNAPG 145 + V + SG + YQ+V ++AD+ G +SI +P+ LIG G I+ + G Sbjct: 61 TMHSVVQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWPDRDG 120 Query: 146 GEKTYEILQV 155 E+ I +V Sbjct: 121 HERLLTIAKV 130 >gi|39933943|ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] gi|192289362|ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] gi|39647790|emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] gi|192283111|gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] Length = 134 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%) Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVI-DIST 80 + +RP I +A G L+E A Y A + L + RA V D Sbjct: 6 RTQRPPITIRSRDAERLGQLAEAAAQRYPATADF----------LAGEVARANVAPDHDP 55 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + G + + ++ + +G +K+ +V EADV++G +S+ +PI ALIG +G IS Sbjct: 56 LPGI-VCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSIS 114 Query: 141 VNAPGGEK 148 P GE+ Sbjct: 115 FETPSGER 122 >gi|172063609|ref|YP_001811260.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6] gi|171996126|gb|ACB67044.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6] Length = 132 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++ Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122 >gi|92118882|ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] gi|91801776|gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 141 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 8/109 (7%) Query: 55 LQNLNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 L++L E M + L I RAE+I + + + + V+ ++ SG K+ + Sbjct: 22 LRHLAEAAMEKYPATAEFLAREIDRAEIIPADRSARNIVTMQSEVTFIDDISGQKRTVIL 81 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155 V ++ADV +G +SI +PI ALIG G I P GG ++ ++ V Sbjct: 82 VYPEDADVDAGKISILTPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 130 >gi|115358874|ref|YP_776012.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD] gi|170700327|ref|ZP_02891339.1| GreA/GreB family elongation factor [Burkholderia ambifaria IOP40-10] gi|115284162|gb|ABI89678.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD] gi|170134761|gb|EDT03077.1| GreA/GreB family elongation factor [Burkholderia ambifaria IOP40-10] Length = 132 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++ Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQATWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122 >gi|225022977|ref|ZP_03712169.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii ATCC 33806] gi|305681896|ref|ZP_07404700.1| transcription elongation factor GreA [Corynebacterium matruchotii ATCC 14266] gi|224944200|gb|EEG25409.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii ATCC 33806] gi|305658369|gb|EFM47872.1| transcription elongation factor GreA [Corynebacterium matruchotii ATCC 14266] Length = 175 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 11/146 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E R+ + Sbjct: 9 ITPESKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKHI 67 Query: 67 ENIITRAEVIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLV 120 I+ + + G +A G+ V + + K ++G + A D+++ Sbjct: 68 SEILANSTTERSGIIEG--VAHVGSVVHVYYNGKPENKETFLIGTRAAASDNKDLET--Y 123 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S SP+ A++G G+ AP G Sbjct: 124 SEQSPLGAAILGAHEGETREYTAPNG 149 >gi|182414436|ref|YP_001819502.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177841650|gb|ACB75902.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 143 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 54/96 (56%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 G ++L + ++R V+D + + I G+TV + + SG+ + Y +V ++A+V + Sbjct: 26 PGTPSQLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIETYTLVLPEQANVDARK 85 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ +PI A+IG G ++ + PGG + I +V Sbjct: 86 LSVLAPIGTAVIGCLQGAEVAWSTPGGTRRLRIGRV 121 >gi|330937778|gb|EGH41648.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. pisi str. 1704B] gi|330981878|gb|EGH79981.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 G ++ SP+ RALIG + GD + P G+++ E+L Sbjct: 121 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159 >gi|171321848|ref|ZP_02910748.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5] gi|171092867|gb|EDT38120.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++ Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGVEKLMKVAAIVF 122 >gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis DSM 43017] gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis DSM 43017] Length = 172 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D+++ EL RP I I+ +R GDL EN Y AA+E Q E R+ L Sbjct: 12 LTQDAYDRLKNELD-ELIANRPVIAAKINASREEGDLKENGGYHAAREEQGQQEARIRHL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124 + ++ A+V + G IA V V + D + ++ +E L S S Sbjct: 71 QELLRSAKVGEAPKDDG--IAEPGMVLTVRYDGDDDEETFLLATREEGGSGSLEVYSPDS 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ +AL+G + + P G Sbjct: 129 PLGKALLGAKENESREYQLPNG 150 >gi|108762200|ref|YP_632099.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK 1622] gi|108466080|gb|ABF91265.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK 1622] Length = 138 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 61 GRMAELENII----TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 GR AE ++ TRA V+ + D + + V ++ SG+++ +V ++A Sbjct: 27 GRTAEFAEMLDAELTRARVVASEEVPPDVVTMNSKVVFEDEQSGERREVTLVYPRDASSD 86 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +S+ +PI ALIG +G I+ PGG Sbjct: 87 DGRISVLAPIGSALIGLTVGQTITWPLPGG 116 >gi|239820663|ref|YP_002947848.1| GreA/GreB family elongation factor [Variovorax paradoxus S110] gi|239805516|gb|ACS22582.1| GreA/GreB family elongation factor [Variovorax paradoxus S110] Length = 133 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +++ AEV + G+ + + V +V+ ++ ++ I +EA +GL+S+ SP Sbjct: 31 LADLLDCAEVTSSRAVPGNIVTMCSRVEIVDAHTRRRQTLTICYPEEAKPAAGLISVLSP 90 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + L+G ++GD AP GE E+ +L+ Sbjct: 91 VGTGLLGLKVGDTARWQAPNGEACAAEVAAILF 123 >gi|330895488|gb|EGH27800.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 165 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%) Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 G ++ SP+ RALIG + GD + P G+++ E+L Sbjct: 121 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159 >gi|254250301|ref|ZP_04943621.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|124876802|gb|EAY66792.1| Transcription elongation factor [Burkholderia cenocepacia PC184] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA+++ + + + + + ++L+++ + ++ + IV A+++ G +++ SP Sbjct: 30 LDTLLERADIVQPNAIKANVVTMNSQITLLDEATQEQATWTIVYPDSANLELGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G + G ++ V P G EK ++ +++ Sbjct: 90 VGMALLGTQRGQMVKVMQPSGAEKLMKVASIVF 122 >gi|78061874|ref|YP_371782.1| GreA/GreB family elongation factor [Burkholderia sp. 383] gi|77969759|gb|ABB11138.1| GreA/GreB family elongation factor [Burkholderia sp. 383] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP Sbjct: 30 LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G + G ++ V P G EK ++ +++ Sbjct: 90 VGMALLGTQRGQMVKVTQPSGAEKLMKVAAIVF 122 >gi|325928206|ref|ZP_08189414.1| transcription elongation factor [Xanthomonas perforans 91-118] gi|325541422|gb|EGD12956.1| transcription elongation factor [Xanthomonas perforans 91-118] Length = 157 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 52 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 111 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 112 VGSALLGLSVGQSIDWRTPDG 132 >gi|167839479|ref|ZP_02466163.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis MSMB43] Length = 132 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/93 (21%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA++++ + + + + + L+++++G + IV A+ + G +++ SP Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDESAGQDMIWTIVYPDAANFEQGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPG-GEKTYEILQVLW 157 + AL+G G+ + V PG + T +I+++++ Sbjct: 90 VGMALLGARRGERVKVTLPGAADATLKIVEIVY 122 >gi|21107037|gb|AAM35791.1| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 138 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 33 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 92 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 93 VGSALLGLSVGQRIDWRTPDG 113 >gi|77748553|ref|NP_641255.2| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 146 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 101 VGSALLGLSVGQRIDWRTPDG 121 >gi|313676808|ref|YP_004054804.1| grea/greb family elongation factor [Marivirga tractuosa DSM 4126] gi|312943506|gb|ADR22696.1| GreA/GreB family elongation factor [Marivirga tractuosa DSM 4126] Length = 149 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 ++ A+ E QN E + +L N ++ A V + M D I G+ V VE G + N + Sbjct: 43 KFLASDETQN--EAWIIKLTNELSNAIVKRENEMPVDVIKIGSKVD-VETPYGRRNNIIL 99 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 V E ++ +S+ SP+ ALIG GD + + P G+ T +IL V+ Sbjct: 100 VKPTEKNINENKISLLSPMGSALIGYAKGDEVDWDLPKGKSTIKILNVV 148 >gi|78046496|ref|YP_362671.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034926|emb|CAJ22571.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 146 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121 >gi|289670900|ref|ZP_06491975.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 143 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121 >gi|187929940|ref|YP_001900427.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J] gi|187726830|gb|ACD27995.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J] Length = 135 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP Sbjct: 34 VDDLIARANVVPSNKIPADVVTMNSVVCVVD-DAGAEQKWTLVYPEEANVASAKLSVLSP 92 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + AL+G G + +AP G + Sbjct: 93 MGAALLGARAGKSVKYSAPNGAQ 115 >gi|289663515|ref|ZP_06485096.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 143 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121 >gi|269137850|ref|YP_003294550.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202] gi|267983510|gb|ACY83339.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202] gi|304557903|gb|ADM40567.1| Regulator of nucleoside diphosphate kinase [Edwardsiella tarda FL6-60] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + A Q LNE EL+ RA+++ + M D + Sbjct: 3 RPAIIINELDAERLDRLLERPAFAAQPVAQALNE----ELD----RAQLLAPAAMPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + N+ ++ +V D +S+ +PI AL+G +GD I P G Sbjct: 55 TMNSRVRFRDLNTNEEHVRTLVYPHLQDSAEDGLSVMAPIGAALLGLRVGDAIRWTLPNG 114 Query: 147 EKTY-EILQVLW 157 +T+ E+L +L+ Sbjct: 115 NQTHIEVLALLY 126 >gi|91215744|ref|ZP_01252714.1| transcription elongation factor GreB [Psychroflexus torquis ATCC 700755] gi|91186210|gb|EAS72583.1| transcription elongation factor GreB [Psychroflexus torquis ATCC 700755] Length = 164 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 +G++ L+ + A+V++ + I FGA V K +G ++++IVG EA+++ Sbjct: 69 DGKLKLLDERLNSAQVLNPEQQNKSEIRFGAHVKF--KMNGSIQDFKIVGVDEANIKEKK 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++ +SP+A A+ K+ GD + EIL + + Sbjct: 127 IAFTSPLAMAMTSKKKGDNFEFKLSQDSRPIEILGINY 164 >gi|85859428|ref|YP_461630.1| transcription elongation factor [Syntrophus aciditrophicus SB] gi|85722519|gb|ABC77462.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 134 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + A V+ M D + + V + +G+++ +V +A++ SG VS+ +P Sbjct: 32 LEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQANMASGRVSVLAP 91 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + ALIG +G I P G K I++VL+ Sbjct: 92 VGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLY 124 >gi|332293562|ref|YP_004432171.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] gi|332171648|gb|AEE20903.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] Length = 167 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 16/151 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTS G ++++EL + L E E + + L LN R L Sbjct: 31 VTSHGLSQLKEELSTLDTK--------------ISTLDETDERERRRALAVLNGKRNLLL 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I + ++D G+ I FGATV+ QIVG EA V+ ++ ++PI Sbjct: 77 ERIQS-VRLLDHIKDEGE-IRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAPI 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK + + + E+ I +++ Sbjct: 135 ARALIGKRIDETTTFQLGNEERKLTIKNIVY 165 >gi|134293951|ref|YP_001117687.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4] gi|134137108|gb|ABO58222.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4] Length = 132 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/93 (21%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA+++ + + + + + ++L+++ S ++ + IV A+++ G +++ SP Sbjct: 30 LDTLLERADIVQPNAVKANVVTMNSQITLLDETSQEQTTWTIVYPDAANLELGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G + G + V P G EK ++ +++ Sbjct: 90 VGMALLGTQRGQSVKVMQPSGIEKLMKVAAIVF 122 >gi|107025987|ref|YP_623498.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU 1054] gi|116692828|ref|YP_838361.1| GreA/GreB family elongation factor [Burkholderia cenocepacia HI2424] gi|170737905|ref|YP_001779165.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3] gi|206563773|ref|YP_002234536.1| putative transcription elongation factor [Burkholderia cenocepacia J2315] gi|105895361|gb|ABF78525.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU 1054] gi|116650828|gb|ABK11468.1| GreA/GreB family elongation factor [Burkholderia cenocepacia HI2424] gi|169820093|gb|ACA94675.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3] gi|198039813|emb|CAR55787.1| putative transcription elongation factor [Burkholderia cenocepacia J2315] Length = 132 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP Sbjct: 30 LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G + G ++ V P G EK ++ +++ Sbjct: 90 VGMALLGTQRGQMVKVMQPSGAEKLMKVAAIVF 122 >gi|310816463|ref|YP_003964427.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare Y25] gi|308755198|gb|ADO43127.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare Y25] Length = 129 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 ++RA+V+ + + D + G+TV+ ++ +G + + + AD+ G +S+++PI A Sbjct: 41 LSRAKVVKSAALPVDTVDLGSTVTFRDETTGKSQTVTLALPENADINEGRISVATPIGVA 100 Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153 LIG G S A G K +E+L Sbjct: 101 LIGLSAGAKFSWLANTGTK-HELL 123 >gi|221196032|ref|ZP_03569079.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M] gi|221202706|ref|ZP_03575725.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2] gi|221176640|gb|EEE09068.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2] gi|221182586|gb|EEE14986.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M] Length = 132 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/95 (22%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RAE++ + + + + ++L+++ + + + IV A+++ G +++ Sbjct: 28 AMLDTLLERAEIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + G + V P G EK ++ ++++ Sbjct: 88 SPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122 >gi|260896883|ref|ZP_05905379.1| transcription elongation factor GreA [Vibrio parahaemolyticus Peru-466] gi|308086278|gb|EFO35973.1| transcription elongation factor GreA [Vibrio parahaemolyticus Peru-466] Length = 38 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 28/38 (73%) Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 1 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 38 >gi|325982230|ref|YP_004294632.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212] gi|325531749|gb|ADZ26470.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212] Length = 136 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA V++ + + D I +T+ V+ +G + +V EA G +SI++P+ A Sbjct: 39 IDRASVVEPTEVPSDVITMNSTIRFVDDMNGSEHQLTLVYPDEAGAH-GTISIAAPVGSA 97 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156 L+G +G I PGG E +L+V+ Sbjct: 98 LLGLSVGQSIRWQVPGGRELNLRVLEVI 125 >gi|25027606|ref|NP_737660.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] gi|23492888|dbj|BAC17860.1| putative transcription elongation factor GreA [Corynebacterium efficiens YS-314] Length = 217 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 15 IQQELRWRQQEE-------RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 I E++ + +EE RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ Sbjct: 52 ITPEMKAKLEEELNTLIARRPIVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQIS 111 Query: 68 NIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123 ++ A + G +A G+ V + + + DK+ + I A L + S Sbjct: 112 EVLANATTEREGIVEG--VANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLETYSEQ 169 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ A++G G+ P G Sbjct: 170 SPLGAAILGAHEGETREYTTPNG 192 >gi|295134424|ref|YP_003585100.1| GreA-like transcription elongation factor [Zunongwangia profunda SM-A87] gi|294982439|gb|ADF52904.1| GreA-like transcription elongation factor [Zunongwangia profunda SM-A87] Length = 166 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 48/98 (48%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 +G++ L A +I + D + FGA V L + + +QIVG EA+V+ Sbjct: 69 DGKLKLLAERRASARIIHPNQQPDDEVRFGAHVKLKNHTANSIQQFQIVGVDEANVKQQK 128 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++ +PIA+A+ G ++G+ + EIL + + Sbjct: 129 IAFVAPIAKAVTGLKVGEKAEFKLGTETRILEILDITY 166 >gi|163747966|ref|ZP_02155295.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] gi|161378763|gb|EDQ03203.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] Length = 146 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%) Query: 54 ELQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 L+ L EG M + I RA++++ M GD + G+ V+ ++ +G K+ Sbjct: 27 HLEELAEGMMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVTYRDETTGQNKSVT 86 Query: 107 IVGDQEADVQSGLVSISSPIARALIG 132 +V ++AD+ VS+ +PI AL+G Sbjct: 87 LVYPEDADITRSQVSVITPIGVALLG 112 >gi|120612663|ref|YP_972341.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] gi|120591127|gb|ABM34567.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] Length = 136 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +++ A+V T+ D + + V LV+ +G ++ I ++AD+ +G VS+ SP Sbjct: 34 LADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRDADLAAGFVSVLSP 93 Query: 126 IARALIGKELGDIISVNAPGGEKT 149 + +L+G +G P GE Sbjct: 94 VGSSLLGLRVGQTARWCTPRGEAC 117 >gi|309781359|ref|ZP_07676095.1| regulator of nucleoside diphosphate kinase [Ralstonia sp. 5_7_47FAA] gi|308919772|gb|EFP65433.1| regulator of nucleoside diphosphate kinase [Ralstonia sp. 5_7_47FAA] Length = 135 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP Sbjct: 34 VDDLIARANVVPGNKIPADVVTMNSVVCVVD-DTGAEQEWTLVYPEEANVASAKLSVLSP 92 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + AL+G G + +AP G + Sbjct: 93 MGAALLGARAGKSVKYSAPNGAQ 115 >gi|303239530|ref|ZP_07326056.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] gi|302592908|gb|EFL62630.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] Length = 147 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 15 IQQELRWRQQEERPRIIKAIS--EARAYGDLSENAEYQAAK-ELQNLNEGRMAELENIIT 71 +Q++L QQ + + E R + + EY + + E + L + ++ L++++ Sbjct: 1 MQKKLTLTQQAYENLLAHLVDFEERRKHIIMLYFPEYNSQRVEFEVLIDDYISALDDVVR 60 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKN---SGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 + S SG+ F S++E + + NY ++ + D + ++I SP+ + Sbjct: 61 N---VSFSDKSGNDFPFVCLNSVIEVEDVENTETFNYMLILPEANDYGTNCITILSPMGK 117 Query: 129 ALIGKELGDIISVNAPGGEKTYEI 152 AL+ K+ G+ +SVN P G Y I Sbjct: 118 ALLCKKDGETVSVNTPSGVYRYRI 141 >gi|296103416|ref|YP_003613562.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057875|gb|ADF62613.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 136 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ + LNE EL+ RA++ +M D + Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVADALNE----ELD----RAQMCTPESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V +G++ +V + S +S+ +P+ AL+G GD I PGG Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSAQLSVLAPVGAALLGLRTGDTIHWELPGG 114 Query: 147 EKTY-EILQVLW 157 T+ E+L +L+ Sbjct: 115 ASTHLEVLALLY 126 >gi|197105386|ref|YP_002130763.1| transcription elongation factor GreA/GreB, family [Phenylobacterium zucineum HLK1] gi|196478806|gb|ACG78334.1| transcription elongation factor GreA/GreB, family [Phenylobacterium zucineum HLK1] Length = 161 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A+V++ S D +AFG V+ K+ G + ++VG+ EA+ G +S +P+ARA+IG Sbjct: 74 AQVVE-SPADPDEVAFGTRVTF-RKDGGAPETVELVGEDEAEPAQGRLSWVAPLARAMIG 131 Query: 133 KELGDIISVNAPGGEKTYEILQV 155 G+ + + EIL V Sbjct: 132 AMPGETVELETRTPAIRLEILAV 154 >gi|56476179|ref|YP_157768.1| transcription elongation factor [Aromatoleum aromaticum EbN1] gi|56312222|emb|CAI06867.1| Transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 158 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AELE RA V+ + + + V +++ SG+++ Q+V +EADV +G VS+ Sbjct: 60 AELE----RAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVF 115 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 +P+ AL+G + +I + P G + Sbjct: 116 APVGAALLGLSVDQVIEWDFPRGPR 140 >gi|75675115|ref|YP_317536.1| transcription elongation factor GreA/GreB region [Nitrobacter winogradskyi Nb-255] gi|74419985|gb|ABA04184.1| GreA/GreB family elongation factor [Nitrobacter winogradskyi Nb-255] Length = 151 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%) Query: 70 ITRAEVI--DISTMSGDR--------IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 I RAE+I D S + R + + V+ ++ SG K+ +V ++ADV +G Sbjct: 45 IDRAEIIPADGSLLDDTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGK 104 Query: 120 VSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155 +SI SPI ALIG G I P GG ++ ++ V Sbjct: 105 ISILSPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 141 >gi|241664050|ref|YP_002982410.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D] gi|240866077|gb|ACS63738.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D] Length = 135 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP Sbjct: 34 VDDLIARANVVPGNKIPADVVTMNSVVCVVD-DTGAEQEWTLVYPEEANVASAKLSVLSP 92 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + AL+G G I AP G + Sbjct: 93 MGAALLGARAGKSIKYAAPNGAQ 115 >gi|259506992|ref|ZP_05749892.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] gi|259165444|gb|EEW49998.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] Length = 174 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 15 IQQELRWRQQEE-------RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 I E++ + +EE RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ Sbjct: 9 ITPEMKAKLEEELNTLIARRPIVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQIS 68 Query: 68 NIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123 ++ A + G +A G+ V + + + DK+ + I A L + S Sbjct: 69 EVLANATTEREGIVEG--VANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLETYSEQ 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ A++G G+ P G Sbjct: 127 SPLGAAILGAHEGETREYTTPNG 149 >gi|77165386|ref|YP_343911.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707] gi|254434724|ref|ZP_05048232.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27] gi|76883700|gb|ABA58381.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707] gi|207091057|gb|EDZ68328.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27] Length = 129 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 62/110 (56%), Gaps = 7/110 (6%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTM-----SGDRI-AFGATVSLVEKNSGDKKNYQIV 108 + +L+ GR+ L AE +D +T+ DR+ + + +++N+G+++ ++V Sbjct: 9 ITDLDYGRLRALGEQTLLAEELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELV 68 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 +EA+ ++G +S+ +P+ AL+G +G+ I P GE + + Q+L+ Sbjct: 69 YPEEANTRAGKISVLAPVGSALLGLSVGESIDWKFPSGEVRRLSVEQILF 118 >gi|34497951|ref|NP_902166.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum ATCC 12472] gi|34103806|gb|AAQ60167.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum ATCC 12472] Length = 134 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Query: 61 GRM-AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ AELE RA+V+D M + + ++V + G +K +V ++AD + G Sbjct: 32 GRLEAELE----RADVVDPQAMPSNVVTMNSSVR-IRLGDGQEKQLTLVYPRDADSEQGR 86 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S+ +PI AL+G G + P G +L++ + Sbjct: 87 ISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITY 124 >gi|83592278|ref|YP_426030.1| nucleoside diphosphate kinase regulator [Rhodospirillum rubrum ATCC 11170] gi|83575192|gb|ABC21743.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC 11170] Length = 136 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA V+ ++ D + GA V+ ++++G + +V EAD+ G +SI +PI A Sbjct: 46 IDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVA 105 Query: 130 LIGKELGDIIS-VNAPGGEKTYEILQV 155 LIG +G I + G E+ +L V Sbjct: 106 LIGLAVGASIDWLTRDGDERHLSVLAV 132 >gi|300114334|ref|YP_003760909.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] gi|299540271|gb|ADJ28588.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] Length = 129 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTM-----SGDRI-AFGATVSLVEKNSGDKKNYQIV 108 + +L+ GR+ L AE +D +T+ DR+ + + +++N+G+++ ++V Sbjct: 9 ITDLDYGRLRALGEQTLLAEELDRATVIPRERVPDRVVTMHSRLIYLDENTGERREVELV 68 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +EA++++G +S+ +P+ AL+G +G+ I P GE Sbjct: 69 YPEEANMRAGKISVLAPVGSALLGLSVGESIDWKFPSGE 107 >gi|194364464|ref|YP_002027074.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia R551-3] gi|194347268|gb|ACF50391.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia R551-3] Length = 134 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 SG+K +V +EA+V G VS+ +P+ AL+G +G I NAPGG K Sbjct: 72 SGEKHVLTLVFPREANVDEGKVSVLAPVGSALLGLSIGQSIDWNAPGGRK 121 >gi|227877958|ref|ZP_03995963.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] gi|227862461|gb|EEJ69975.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] Length = 90 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53 MV +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK Sbjct: 20 MVYFQKMTPEGYQQIEDEIA-RLKKDRPRRIKILQAARALGDLSENTEYTEAK 71 >gi|149369863|ref|ZP_01889714.1| transcription elongation factor [unidentified eubacterium SCB49] gi|149356354|gb|EDM44910.1| transcription elongation factor [unidentified eubacterium SCB49] Length = 139 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%) Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 A+++ K + LNE EL+ I ++D M D I F + V + KN G KK +Q Sbjct: 27 ADFEIQKSFKRLNE----ELKTAI----IVDEEEMPTDVIRFNSQVLISTKN-GWKKEFQ 77 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IV DV++ +SI + + AL G GD + P G+ I +V Sbjct: 78 IVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKNLITIEKV 126 >gi|295096632|emb|CBK85722.1| Transcription elongation factor [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 136 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ + LNE EL+ RA++ TM D + Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVSDALNE----ELD----RAQMCTPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V +G++ +V + S +S+ +P+ AL+G GD I PGG Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114 Query: 147 EKTY-EILQVLW 157 + E+L++L+ Sbjct: 115 ASAHLEVLELLY 126 >gi|190572883|ref|YP_001970728.1| putative regulator of nucleoside diphosphate kinase [Stenotrophomonas maltophilia K279a] gi|190010805|emb|CAQ44414.1| putative regulator of nucleoside diphosphate kinase [Stenotrophomonas maltophilia K279a] Length = 134 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 SG+K +V +EA+V G VS+ +P+ AL+G +G I NAPGG K Sbjct: 72 SGEKHVLTLVFPREANVDEGKVSVLAPVGSALLGLSIGQSIDWNAPGGRK 121 >gi|255035431|ref|YP_003086052.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM 18053] gi|254948187|gb|ACT92887.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM 18053] Length = 134 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 51/108 (47%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 Q A+ + N L + RA V++ + + I + V + E + + + IV Sbjct: 20 QFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVM 79 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++AD+ +SI +P+ ALIG G+ + P G + ++IL V + Sbjct: 80 PKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGIRRFKILDVWY 127 >gi|319763041|ref|YP_004126978.1| transcription elongation factor grea/greb domain-containing protein [Alicycliphilus denitrificans BC] gi|330825121|ref|YP_004388424.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] gi|317117602|gb|ADV00091.1| transcription elongation factor GreA/GreB domain-containing protein [Alicycliphilus denitrificans BC] gi|329310493|gb|AEB84908.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] Length = 135 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V D M + + +TV SG +V +E D V Sbjct: 30 GRDA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKV 88 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SI +P+ AL+G +GD + +P G+ T + Sbjct: 89 SIFAPVGIALLGLAVGDEFQMPSPTGQVTVRV 120 >gi|289208904|ref|YP_003460970.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] gi|288944535|gb|ADC72234.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] Length = 136 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A+LE + RA+V+D + G + + V SG++ + +V ++ D G +SI Sbjct: 32 ADLEAELDRADVVDSREIPGTVVTMNSKVRFRVTESGEEFSLTLVYPRDVDDSGGTLSIL 91 Query: 124 SPIARALIGKELGDIISVNAPGGEKTY 150 +P+ AL+G GD I PGG + + Sbjct: 92 APVGSALLGLSEGDEIEWPRPGGGQMH 118 >gi|254521305|ref|ZP_05133360.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp. SKA14] gi|219718896|gb|EED37421.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp. SKA14] Length = 134 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+ A Sbjct: 43 LNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVGSA 102 Query: 130 LIGKELGDIISVNAPGGEK 148 L+G +G I NAPGG K Sbjct: 103 LLGLAIGQSIDWNAPGGRK 121 >gi|325914289|ref|ZP_08176639.1| transcription elongation factor [Xanthomonas vesicatoria ATCC 35937] gi|325539544|gb|EGD11190.1| transcription elongation factor [Xanthomonas vesicatoria ATCC 35937] Length = 172 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA ++ + GD + + + ++ G++ +V EADVQ G +S+ +P Sbjct: 67 LSDELGRARLLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G +G I P G Sbjct: 127 VGSALLGLSVGQSIDWRTPDG 147 >gi|163748064|ref|ZP_02155383.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] gi|161378670|gb|EDQ03120.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] Length = 145 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 54 ELQNLNEGRM-------AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 EL+ L+EG M +L + RA ++ + D + G V+ ++ +G Sbjct: 25 ELEALSEGMMRRNPELAEQLVEELGRARIVTPQRLRADVVDLGREVTYHDEATGKDHTVT 84 Query: 107 IVGDQEADVQSGLVSISSPIARALIG 132 +V Q AD+ +GLVS+ +PI ALIG Sbjct: 85 LVLPQTADISNGLVSVMTPIGVALIG 110 >gi|114320917|ref|YP_742600.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii MLHE-1] gi|114227311|gb|ABI57110.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii MLHE-1] Length = 137 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---AELENIITRAEVIDISTMS 82 ERP I+ + +A DL L +L G + AEL+ + RAE+++ + Sbjct: 3 ERPNIVISTLDADRLYDL-----------LDSLPAGGVPSKAELKAELERAEIVEPEDIP 51 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 ++ +TV +S ++ +V ++ D SG +S+ +P+ AL+G GD I Sbjct: 52 PTVVSMNSTVRFRVASSSEEFTLTLVYPKDMDATSGKISVLAPVGSALLGLSQGDEIEWP 111 Query: 143 APGG 146 PGG Sbjct: 112 KPGG 115 >gi|225157643|ref|ZP_03725033.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] gi|224802710|gb|EEG20963.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] Length = 148 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 50 QAAKELQNLNEGR-----MAELENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKK 103 Q L + EGR +A L RA +I D + M + V L + ++ + + Sbjct: 16 QIRARLNLIAEGRHDRENLARLRAEFDRALIIEDDTAMPDGVVTLHCEVRLQDLDTNEIE 75 Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 Y + + AD ++ +SI +PI AL+G ++ ++++ PGG + IL+ Sbjct: 76 TYTLTLPEHADPEAHRISILAPIGTALLGYQVDNVVTWEMPGGARRLRILE 126 >gi|300703154|ref|YP_003744756.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CFBP2957] gi|299070817|emb|CBJ42114.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CFBP2957] Length = 134 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V V SG + + +V EAD+ + +S+ SP Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVR-VRTESGVAQQWTLVYPDEADLAAARLSVCSP 91 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + AL+G GD + AP G T LQ+ Sbjct: 92 MGAALLGGRAGDAVHYVAPDG--TTHALQI 119 >gi|209884060|ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] gi|209872256|gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] Length = 134 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 33 AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATV 92 AIS AR G L AE AA + +E E+E RAE+ D +A + V Sbjct: 13 AIS-ARDAGRLRHLAEV-AAGQYPETSEFLAREIE----RAEIRAADQSMRDIVAMQSEV 66 Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYE 151 + + G + +V ++ADV +G +S+ +PI ALIG ++G I P GG ++ Sbjct: 67 TFRDDIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAGGWRSLT 126 Query: 152 ILQVL 156 +++V+ Sbjct: 127 VIKVV 131 >gi|167031723|ref|YP_001666954.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] gi|166858211|gb|ABY96618.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] Length = 165 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNY-QIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + S ++ G+ V V+ D+++ ++VG+ EAD GL++ SP+ RAL+G GD Sbjct: 86 AAASRSKVQIGSRVRFVDAQ--DQEHVVRLVGEDEADAGRGLINWGSPLGRALLGAGPGD 143 Query: 138 IISVNAPGGEKTYEILQV 155 + P G++ EIL++ Sbjct: 144 EVVWRRPVGDQVIEILEI 161 >gi|262369473|ref|ZP_06062801.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] gi|262315541|gb|EEY96580.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] Length = 50 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ Sbjct: 6 ITRAGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQ 49 >gi|153011001|ref|YP_001372215.1| nucleoside diphosphate kinase regulator [Ochrobactrum anthropi ATCC 49188] gi|151562889|gb|ABS16386.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] Length = 142 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 ++ L+ + E M EL+ RA+V+ + + I G+TV N G ++ +V Sbjct: 29 SERLEEIAEELMVELD----RAKVVPAKRLPQNVIHMGSTVEF-RSNDGQERRVTLVYPG 83 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 EAD+ G +SI +PI ALIG G IS A G K +E+ Sbjct: 84 EADIAQGKISILTPIGTALIGLAPGQSISWTARDG-KQHEL 123 >gi|146280909|ref|YP_001171062.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri A1501] gi|145569114|gb|ABP78220.1| regulator of nucleoside diphosphate kinase [Pseudomonas stutzeri A1501] gi|327479178|gb|AEA82488.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri DSM 4166] Length = 134 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 L +L++ G AE LE ++RA+V++ S M + + V ++ SG + +V + Sbjct: 21 LDSLDDYGPAAEALEQELSRAQVVERSEMPAGVVTMNSRVHCRDEGSGKDYHLTLVYPHD 80 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 A + G VS+ +P+ AL+G +G I APGG+ Sbjct: 81 AG-KEGTVSVLAPVGTALLGMSVGQHIDWPAPGGK 114 >gi|161520489|ref|YP_001583916.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC 17616] gi|189353320|ref|YP_001948947.1| regulator of nucleoside diphosphate kinase [Burkholderia multivorans ATCC 17616] gi|221209737|ref|ZP_03582718.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1] gi|160344539|gb|ABX17624.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC 17616] gi|189337342|dbj|BAG46411.1| regulator of nucleoside diphosphate kinase [Burkholderia multivorans ATCC 17616] gi|221170425|gb|EEE02891.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1] Length = 132 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/95 (21%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA+++ + + + + ++L+++ + + + IV A+++ G +++ Sbjct: 28 AMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + G + V P G EK ++ ++++ Sbjct: 88 SPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122 >gi|86751649|ref|YP_488145.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] gi|86574677|gb|ABD09234.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] Length = 134 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +RP I+ +A G L+E A Q + G +A RA V Sbjct: 8 QRPPIVLRSRDAERLGQLAEAA-AQRHPATADFLAGEVA-------RAAVTPDGEPLPGI 59 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + ++ ++++G +K +V +ADV++G +S+ +PI ALIG +G I+ P Sbjct: 60 VCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPIGAALIGLSVGQSITFETPS 119 Query: 146 GEK 148 GE+ Sbjct: 120 GER 122 >gi|332290966|ref|YP_004429575.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] gi|332169052|gb|AEE18307.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] Length = 139 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%) Query: 41 GDLSENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGATV 92 G + E EY K + N++ + + L N + A ++D M + I F + V Sbjct: 5 GLILEKREYVFLKRVLNISGYVDDFETQKSLQRLSNELKSAHIVDDCDMPLNVIRFNSKV 64 Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 + V + G +K Q+V + DV VS+ +P+ A+ G + G II+ P G + I Sbjct: 65 T-VSSDRGWEKTLQVVAPADKDVALSKVSVLTPMGSAIFGNKEGAIINWMFPSGMQELTI 123 Query: 153 LQVL 156 +V+ Sbjct: 124 TKVI 127 >gi|329847121|ref|ZP_08262149.1| regulator of nucleoside diphosphate kinase [Asticcacaulis biprosthecum C19] gi|328842184|gb|EGF91753.1| regulator of nucleoside diphosphate kinase [Asticcacaulis biprosthecum C19] Length = 142 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%) Query: 39 AYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN 98 A GDL+ A+Y L + RA V+ ++ + G+ VS Sbjct: 34 ATGDLAPAAQY----------------LRRELDRAAVVATMKLNPAVVRLGSVVSYA-AG 76 Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQV 155 G ++ Q+V EAD+ +G +SI +P+ ALIG G I+ A G +++ E+ +V Sbjct: 77 KGAERTVQLVLPGEADISTGCISILTPVGAALIGLRAGQSITFTTAQGRQQSLEVFRV 134 >gi|325277076|ref|ZP_08142731.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] gi|324097783|gb|EGB95974.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] Length = 165 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + A+V+ +T S ++ G+ V V+ ++VG+ EAD GL++ SP+ RA Sbjct: 78 VQSAQVVPPAT-SHSKVQIGSRVRFVDAQD-QAHEVRLVGEDEADAGRGLINWGSPLGRA 135 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L+G GD + P GE E+ V+ Sbjct: 136 LLGAGPGDEVVWQRPVGELVIEVTDVI 162 >gi|300690546|ref|YP_003751541.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum PSI07] gi|299077606|emb|CBJ50241.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum PSI07] Length = 134 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 59 NEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N +AEL +++I RA V+ + D + + V V SG + + +V EA++ + Sbjct: 25 NSSPLAELVDDLIARANVVPSDMIPADVVTMNSVVR-VRAGSGAAQEWTLVYPDEANLAA 83 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 +S+ SP+ AL+G GD + AP G Sbjct: 84 ARLSVLSPMGSALLGGRAGDEVHYAAPDG 112 >gi|146305312|ref|YP_001185777.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina ymp] gi|145573513|gb|ABP83045.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp] Length = 135 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ + RAEV+ + + + + V E++SG + +V Q+A + G VSI Sbjct: 32 AALQAELDRAEVVGLDEVPAGLVTMNSRVHCREESSGKDYHLTLVYPQDAGGE-GTVSIL 90 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 +P+ AL+G +G I APGG++ Sbjct: 91 APVGSALLGLSVGQHIDWPAPGGKQ 115 >gi|149174289|ref|ZP_01852916.1| nucleoside diphosphate kinase regulator protein, putative [Planctomyces maris DSM 8797] gi|148846834|gb|EDL61170.1| nucleoside diphosphate kinase regulator protein, putative [Planctomyces maris DSM 8797] Length = 137 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 52/99 (52%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N+ ++ L + A +++ + D + +TV L + + + + Y +V Q+A+++ G Sbjct: 30 NKPYLSGLHAELAVAHIVESEEIPADIVTMNSTVRLRDLETDELETYTLVYPQDANIKEG 89 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI +PI A++G +GD + A G + ++L+ Sbjct: 90 KLSILTPIGTAILGYRIGDQLRSRALAGGSKIRVEEILF 128 >gi|325290512|ref|YP_004266693.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM 8271] gi|324965913|gb|ADY56692.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM 8271] Length = 138 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 14/133 (10%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 ++R RI+K I + +G N+ + +LE + RA ++ + + Sbjct: 10 KDRERILKLIEREKEFG--------------TGRNKEPLRDLEQELNRANIVSSEEIPHE 55 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 I + V L + G++ Y +V ++A + +S+ +PI A++G GD+I P Sbjct: 56 SITMNSKVLLKDLALGEETIYTLVYPEDAKLSENKISVLAPIGTAILGFREGDVIDWKVP 115 Query: 145 GGEKTYEILQVLW 157 G + ++L+ Sbjct: 116 AGTVQLRVEKILY 128 >gi|330812543|ref|YP_004357005.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380651|gb|AEA72001.1| putative transcriptional regulator, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 136 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ EV D + + V E++SG + +V Q+A+ G +SI +P+ Sbjct: 41 ENVVGHEEV------PADVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGRISILAPV 94 Query: 127 ARALIGKELGDIISVNAPGGE 147 AL+G ++G I APGG+ Sbjct: 95 GSALLGLKVGQHIDWPAPGGK 115 >gi|256821334|ref|YP_003145297.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069] gi|256794873|gb|ACV25529.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069] Length = 136 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 45/82 (54%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + RAE+++ + + + +TV +S ++ Y +V ++AD + +SI + Sbjct: 33 ELEIELERAEIVEPKEVPANVVTMNSTVRFKVASSKEEFEYTLVYPKDADGSNNKISILA 92 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ A++G + GD I PGG Sbjct: 93 PVGSAMLGLKEGDEIEWPKPGG 114 >gi|146310806|ref|YP_001175880.1| nucleoside diphosphate kinase regulator [Enterobacter sp. 638] gi|145317682|gb|ABP59829.1| GreA/GreB family elongation factor [Enterobacter sp. 638] Length = 136 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA++ +M D + + V + SG++ +V + S +S+ +P Sbjct: 34 LNDELDRAQMCTAESMPHDVVTMNSQVRFRDLTSGEEHTRTLVYPAQMTDSSTQLSVLAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G GD I PGG + E+L++L+ Sbjct: 94 VGAALLGLRTGDTIHWELPGGASAHLEVLELLY 126 >gi|77359225|ref|YP_338800.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas haloplanktis TAC125] gi|76874136|emb|CAI85357.1| putative regulator of nucleoside diphosphate kinase [Pseudoalteromonas haloplanktis TAC125] Length = 161 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + RA ++D + + +TV+ V ++S ++ N +V ++ D +SI + Sbjct: 58 ELEAELGRATIVDPKDVPATIVTMNSTVNFVVESSKEEFNLTLVYPKDLDASGQKISILA 117 Query: 125 PIARALIGKELGDIISVNAPGG 146 PI AL+G GD I PGG Sbjct: 118 PIGGALLGLSQGDEIEWPKPGG 139 >gi|134299378|ref|YP_001112874.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1] gi|134052078|gb|ABO50049.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1] Length = 137 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 53/105 (50%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 KE ++ + LE + A+V+ + D I + V L + ++ ++ Y +V + Sbjct: 23 KEFNPASKEYLKSLEEELKLAQVVPSKEIPQDVITMNSKVLLKDLDADEELTYSLVYPAD 82 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 AD+ +SI +P+ A++G +GD+++ P G ++ +L+ Sbjct: 83 ADLLEDKISILAPVGTAILGYRVGDVVNWKVPDGVVQLKVENILY 127 >gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis C] gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis C] Length = 110 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67 Query: 67 ENIITRAEVIDISTMSG 83 +++++ A+V + SG Sbjct: 68 QDLLSNAKVGEAPKQSG 84 >gi|183222143|ref|YP_001840139.1| putative transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912206|ref|YP_001963761.1| transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776882|gb|ABZ95183.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780565|gb|ABZ98863.1| Putative transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 138 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 53/102 (51%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 +N + + +L I RA+ +D + + + + + + + K +++V +++++ Sbjct: 27 RNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVYPEDSNL 86 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI +PIA A IG + GD+I N P G ++I ++ + Sbjct: 87 DQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKY 128 >gi|299132174|ref|ZP_07025369.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] gi|298592311|gb|EFI52511.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] Length = 134 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RAE+ D +A + V+ + G + +V ++ADV +G +S+ +PI A Sbjct: 44 IERAEIRSADQSMRDIVAMQSEVTFRDDIGGQSRTVTLVYPEDADVGAGKISVLTPIGAA 103 Query: 130 LIGKELGDIISVNAP-GGEKTYEILQVL 156 LIG +G I P GG ++ + +VL Sbjct: 104 LIGMSVGKSIEFQTPAGGWRSLTVTKVL 131 >gi|294010092|ref|YP_003543552.1| transcription elongation factor [Sphingobium japonicum UT26S] gi|292673422|dbj|BAI94940.1| transcription elongation factor [Sphingobium japonicum UT26S] Length = 156 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV-NAP 144 +AFG+ V+ + +G +K IVGD EA+ G ++ S+P+ARA++ E G+ + P Sbjct: 85 VAFGSRVTY--RLNGREKRIDIVGDDEAEPAEGRIAFSAPLARAMMDAEEGETVDFAGKP 142 Query: 145 GG 146 G Sbjct: 143 GA 144 >gi|42521926|ref|NP_967306.1| regulator of nucleoside diphosphate kinase [Bdellovibrio bacteriovorus HD100] gi|39574456|emb|CAE77960.1| regulator of nucleoside diphosphate kinase [Bdellovibrio bacteriovorus HD100] Length = 138 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EG AE LE ++RA VI + + + + V +++ SG + +V Q+A ++ G Sbjct: 29 EGPFAEALEEELSRANVIAQKEIPKNVVTMNSRVQFLDEVSGQESEMTLVYPQDAKLEEG 88 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE 147 +SI +P+ AL+G +G I+ P G+ Sbjct: 89 RLSILAPVGIALLGLSVGQEINWKLPNGQ 117 >gi|254000392|ref|YP_003052455.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|313202349|ref|YP_004041007.1| grea/greb family elongation factor [Methylovorus sp. MP688] gi|253987071|gb|ACT51928.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|312441665|gb|ADQ85771.1| GreA/GreB family elongation factor [Methylovorus sp. MP688] Length = 118 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R L + + RA V+ M D + + V+ V++++G + ++V +EA+++ G +S Sbjct: 21 RHHALSDELDRAIVVPSEKMPPDIVGLNSRVTYVDESNGVSRTIELVLPEEANMEQGKIS 80 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 + +P+ AL+G + G I P G Sbjct: 81 VLAPVGTALLGLKAGQSIEWPFPNG 105 >gi|237746097|ref|ZP_04576577.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS] gi|229377448|gb|EEO27539.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS] Length = 140 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ERP I + + NA+Y+ N MA+L+ + RA V++ + D Sbjct: 13 ERPPITVTTHDYERLEQMLRNAKYR--------NIPGMADLQRELDRANVVEPEELPEDV 64 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 I +T ++ + D+ +V +AD S +S+ +P+ AL+G G I PG Sbjct: 65 ITINSTARFIDDCTNDQYEITLVYPDKADGVSK-ISVLAPVGSALLGLSAGQSIPWQVPG 123 Query: 146 GEK 148 +K Sbjct: 124 RQK 126 >gi|117619344|ref|YP_857300.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560751|gb|ABK37699.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 131 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N + L+ + RAE+ + + M D + +TV +SG++ +V ++ Sbjct: 22 NHPQHLALQEELDRAEMREPADMPPDVVTMNSTVRFKMPSSGNEFCLTLVYPKDVQGDES 81 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +S+ +P+ AL+G ++GD I+ P G EIL+V++ Sbjct: 82 KISVLAPVGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121 >gi|206580755|ref|YP_002239725.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae 342] gi|288936567|ref|YP_003440626.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|290510377|ref|ZP_06549747.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55] gi|206569813|gb|ACI11589.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae 342] gi|288891276|gb|ADC59594.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|289777093|gb|EFD85091.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55] Length = 136 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA+++ M D + + V + SG+++ +V + + +S+ +P Sbjct: 34 LNDELDRAQMLAPEAMPHDVVTMNSKVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G ++G I PGG T+ E+L++L+ Sbjct: 94 VGAALLGLKVGSTIHWELPGGASTHLEVLELLY 126 >gi|160897843|ref|YP_001563425.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1] gi|160363427|gb|ABX35040.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1] Length = 134 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V++ M + + +TV SG +V +E D S V Sbjct: 29 GREA-LEAELDRADVLEPKEMPPNVVTMNSTVRFTLLESGKSNTLTLVYPKEMDGSSDKV 87 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S+ +P+ AL+G +GD + P G+ T + Sbjct: 88 SVFAPVGIALLGLSVGDQSRMAGPSGQVTVRV 119 >gi|30250064|ref|NP_842134.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] gi|30139171|emb|CAD86041.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 137 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 QN GR +LE + RAEV+D + + +TV ++S ++ +V ++ D Sbjct: 26 QNAFPGR-DDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT 84 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146 +SI +P+ AL+G GD I PGG Sbjct: 85 SGEKISILAPVGSALLGLAQGDEIEWPKPGG 115 >gi|83747221|ref|ZP_00944263.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum UW551] gi|207721693|ref|YP_002252132.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum MolK2] gi|207744206|ref|YP_002260598.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum IPO1609] gi|83726045|gb|EAP73181.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum UW551] gi|206586855|emb|CAQ17440.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum MolK2] gi|206595611|emb|CAQ62538.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum IPO1609] Length = 134 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V V SG + + +V EAD+ + +S+ SP Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVR-VRAASGVAQQWTLVYPDEADLAAARLSVCSP 91 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+G GD + AP G Sbjct: 92 MGAALLGGRAGDAVHYVAPDG 112 >gi|260466738|ref|ZP_05812924.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] gi|259029468|gb|EEW30758.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] Length = 140 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + + RA + D + M D + G+TV+ V GD + +V EAD+ +S+ + Sbjct: 40 ELLSEMDRAVIADAAAMPADVVRMGSTVA-VSSEGGDIQRITLVYPGEADIAENRISVLT 98 Query: 125 PIARALIGKELGDIIS 140 P+ ALIG +G ++ Sbjct: 99 PMGTALIGAAIGQVVC 114 >gi|94312386|ref|YP_585596.1| GreA/GreB family elongation factor [Cupriavidus metallidurans CH34] gi|93356238|gb|ABF10327.1| regulator of nucleoside diphosphate kinase [Cupriavidus metallidurans CH34] gi|222871747|gb|EEF08878.1| predicted protein [Populus trichocarpa] Length = 145 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 41/81 (50%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ RA ++ + D + + V + +++ +V +AD+ +G +S+ SP Sbjct: 43 LDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSP 102 Query: 126 IARALIGKELGDIISVNAPGG 146 I +AL+G GD + P G Sbjct: 103 IGQALLGARSGDTVDYRLPDG 123 >gi|238893687|ref|YP_002918421.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae NTUH-K2044] gi|238546003|dbj|BAH62354.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 136 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+++ M D + + V + SG+++ +V + + +S+ +P+ A Sbjct: 38 LDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAA 97 Query: 130 LIGKELGDIISVNAPGGEKTY-EILQVLW 157 L+G ++G I PGG T+ E+L++L+ Sbjct: 98 LLGLKVGSTIHWELPGGASTHLEVLELLY 126 >gi|152969224|ref|YP_001334333.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041289|ref|ZP_06014500.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006064|ref|ZP_08305482.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3] gi|150954073|gb|ABR76103.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041405|gb|EEW42465.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536002|gb|EGF62415.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3] Length = 140 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+++ M D + + V + SG+++ +V + + +S+ +P+ A Sbjct: 42 LDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAA 101 Query: 130 LIGKELGDIISVNAPGGEKTY-EILQVLW 157 L+G ++G I PGG T+ E+L++L+ Sbjct: 102 LLGLKVGSTIHWELPGGASTHLEVLELLY 130 >gi|307293531|ref|ZP_07573375.1| transcription elongation factor GreA/GreB domain-containing protein [Sphingobium chlorophenolicum L-1] gi|306879682|gb|EFN10899.1| transcription elongation factor GreA/GreB domain-containing protein [Sphingobium chlorophenolicum L-1] Length = 156 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 +AFG+ V+ + +G +K +VGD EA+ G ++ S+P+ARA++ E G+ + Sbjct: 85 VAFGSRVTY--RLNGKEKRIDLVGDDEAEPAEGRIAFSAPLARAMMDAEEGEAVDFGGKP 142 Query: 146 G 146 G Sbjct: 143 G 143 >gi|294634651|ref|ZP_06713184.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC 23685] gi|291091897|gb|EFE24458.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC 23685] Length = 140 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ Q LNE EL+ RA+++ M D + Sbjct: 7 RPAIIINELDAERLDRLLERPEFANQPIAQALNE----ELD----RAQLLAPEAMPTDVV 58 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + V + +S ++ ++ D + GL S+ +PI AL+G +GD I + P Sbjct: 59 TMNSRVRFRDLSSNEEHVRTLIYPHLPNDAEDGL-SVMAPIGAALLGLHVGDAIRWHLPN 117 Query: 146 GEKTY-EILQVLW 157 G +T+ E+L +L+ Sbjct: 118 GSQTHIEVLALLY 130 >gi|221065879|ref|ZP_03541984.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1] gi|220710902|gb|EED66270.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1] Length = 135 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V+D + M + + +TV G +V ++ D + V Sbjct: 30 GRDA-LEAELDRADVLDPAEMPANVVTMNSTVRFTMLEIGKSSTLTLVYPKDMDGSADKV 88 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SI +P+ AL+G +GD + +P G+ T + Sbjct: 89 SIFAPVGIALLGLSVGDEFKMPSPTGQVTVRV 120 >gi|213582301|ref|ZP_03364127.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 62 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL 43 IP+T +G +K+++EL + + RP II AI+EAR +GDL Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDL 42 >gi|153004547|ref|YP_001378872.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] gi|152028120|gb|ABS25888.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] Length = 138 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 59 NEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + R AE L+ + RA + I D + A V+ V+ SG ++ +V ++ADV + Sbjct: 28 RDARAAEQLDAELDRA--VPIEVAPPDLVTMNARVAFVDLASGVRRELVLVYPRDADVAA 85 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 G VS+ +PI AL+G +G+ I P G Sbjct: 86 GRVSVLAPIGAALLGLSVGEEIDWPLPDG 114 >gi|73542981|ref|YP_297501.1| transcription elongation factor GreA/GreB region [Ralstonia eutropha JMP134] gi|72120394|gb|AAZ62657.1| Prokaryotic transcription elongation factor GreA/GreB region [Ralstonia eutropha JMP134] Length = 139 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 61 GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 G MA+ L+ ++ RA ++ + D + + + + + + +V EAD +G Sbjct: 31 GPMADMLDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYPDEADFDAGR 90 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150 +S+ SP+ +AL+G G+ +S P G + + Sbjct: 91 LSVLSPVGQALLGARAGETVSYRLPDGREQH 121 >gi|74095577|emb|CAJ27343.1| conserved hypothetical protein [Cronobacter sakazakii] Length = 136 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA ++ M D + + V + SG+ +V Q A +S+ +P Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFSDLASGETYERLLVYPQNAGSSPEALSVMAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G +GD I P G +T+ E+L++L+ Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126 >gi|145298530|ref|YP_001141371.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851302|gb|ABO89623.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida subsp. salmonicida A449] Length = 131 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N + L+ + RAE+ + + M D + +TV +NS ++ +V ++ Sbjct: 22 NHPQHLALQEELDRAEMREPADMPPDVVTMNSTVRFKMQNSENEFCLTLVYPKDVQGDES 81 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +S+ +P+ AL+G ++GD I+ P G EIL+V++ Sbjct: 82 RISVLAPVGSALLGLKVGDSIAWPGPAGRTIQVEILEVVY 121 >gi|121595126|ref|YP_987022.1| GreA/GreB family elongation factor [Acidovorax sp. JS42] gi|120607206|gb|ABM42946.1| GreA/GreB family elongation factor [Acidovorax sp. JS42] Length = 135 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V D M + + +TV +G +V +E D V Sbjct: 30 GREA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKV 88 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S+ +P+ AL+G +GD + +P G+ T + Sbjct: 89 SVFAPVGIALLGLGVGDEFQMPSPTGQVTVRV 120 >gi|156934868|ref|YP_001438784.1| nucleoside diphosphate kinase regulator [Cronobacter sakazakii ATCC BAA-894] gi|156533122|gb|ABU77948.1| hypothetical protein ESA_02716 [Cronobacter sakazakii ATCC BAA-894] Length = 136 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA ++ M D + + V + SG+ +V Q A +S+ +P Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G +GD I P G +T+ E+L++L+ Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126 >gi|194291135|ref|YP_002007042.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis LMG 19424] gi|193224970|emb|CAQ70981.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis LMG 19424] Length = 139 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 40/83 (48%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++ + D + V +N+ +V AD +G +S+ SP Sbjct: 37 LDSLLARATIVAPEEIPTDVVTMNTRVVCTLPGEQAPRNWTLVYPDAADFDAGRLSVLSP 96 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + +AL+G G+ +S P G + Sbjct: 97 VGQALLGARAGETVSYRLPDGRE 119 >gi|222111468|ref|YP_002553732.1| grea/greb family elongation factor [Acidovorax ebreus TPSY] gi|221730912|gb|ACM33732.1| GreA/GreB family elongation factor [Acidovorax ebreus TPSY] Length = 135 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V D M + + +TV +G +V +E D V Sbjct: 30 GREA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKV 88 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 S+ +P+ AL+G +GD + +P G+ T + Sbjct: 89 SVFAPVGIALLGLGVGDEFQMPSPTGQVTVRV 120 >gi|326802507|ref|YP_004320326.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21] gi|326553271|gb|ADZ81656.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21] Length = 124 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 RA+V+ + +R+ + V + + +S + ++IV AD++ +S+ +P+ ALI Sbjct: 40 RAKVLAKDAIEKERVKLNSQVMVKDLDSQNTMVFRIVTPDLADMKQQKISVLTPMGSALI 99 Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 G + GD + P G K Y IL+V Sbjct: 100 GFKEGDQVEWKMPIGIKRYVILKV 123 >gi|332995758|gb|AEF05813.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 87 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 +D S +++ FGA V +E G ++VG E + +SI SP+ARAL+GKE Sbjct: 1 MDYSPEQENKVYFGAWVE-IENEQGQVLELRLVGYDEIFGRRDYISIDSPMARALVGKEE 59 Query: 136 GDIISVNAPGGEKTYEI 152 D I+V K + I Sbjct: 60 DDDITVKTETDVKEWWI 76 >gi|37527898|ref|NP_931243.1| nucleoside diphosphate kinase regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787334|emb|CAE16418.1| Regulator of nucleoside diphosphate kinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 136 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V ++ S +++ +V S +S+ +P+ A Sbjct: 38 LDRAEIVPPAEIPSDVVTMNSRVRFIDLTSNEERVRTLVYPASLQDSSDQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +GD IS P GE+T ++L++L+ Sbjct: 98 LLGLRIGDEISWELPNGEETRVKVLELLY 126 >gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM 44728] gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM 44728] Length = 152 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%) Query: 52 AKELQNLNEGRM--AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIV 108 A+ELQ + + ++ A +E + R + +T D + G+TV++ + S D + Sbjct: 47 AQELQRVTDLQLLDARVEKLTARLDASATATQGRTDLVDVGSTVTI--RFSDDTTETLHI 104 Query: 109 GDQEADVQSGL-VSISSPIARALIGKELGDIISVNAPGGEKT 149 G + ADV L V+ SP+ RAL+G GD +S N P G T Sbjct: 105 G-EIADVDDQLLVTAGSPLGRALLGHRAGDTVSYNTPSGHAT 145 >gi|255531969|ref|YP_003092341.1| transcription elongation factor GreA/GreB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344953|gb|ACU04279.1| transcription elongation factor GreA/GreB domain protein [Pedobacter heparinus DSM 2366] Length = 125 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 41/75 (54%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + D + + + +G + +++V +EA++++ VS+ +PI AL G GD I+ Sbjct: 48 LPSDVVCLKSEARIANVKTGKEFTFKLVMPEEANIKAQKVSVFAPIGIALFGYRTGDSIN 107 Query: 141 VNAPGGEKTYEILQV 155 P G + ++IL+V Sbjct: 108 WEMPDGIQEFKILEV 122 >gi|330820196|ref|YP_004349058.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3] gi|327372191|gb|AEA63546.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3] Length = 132 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 17/83 (20%), Positives = 45/83 (54%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ ++ RA++++ M + + + +L ++ + + + +V +A +G +++ Sbjct: 28 AMLDTLLERADIVNADAMKANVVTMNSQFTLTDEATHEAITWTLVYPDQARSDAGRLNVF 87 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+G G+ +++ P G Sbjct: 88 SPVGMALLGARQGEHVNITLPNG 110 >gi|253991158|ref|YP_003042514.1| nucleoside diphosphate kinase regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782608|emb|CAQ85772.1| regulator of nucleoside diphosphate kinase [Photorhabdus asymbiotica] Length = 136 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V ++ S +++ +V S +S+ +P+ A Sbjct: 38 LDRAEIVPPAEIPSDVVTMNSRVRFLDLTSSEERVRTLVYPASLQDSSNQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +GD IS P GE+T ++L++L+ Sbjct: 98 LLGLRIGDEISWKLPNGEETRVKVLELLY 126 >gi|119897107|ref|YP_932320.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp. BH72] gi|119669520|emb|CAL93433.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp. BH72] Length = 135 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+V + M D I + E+ SG + + ++AD +G VS+ SP A Sbjct: 37 LDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDADGAAGKVSVFSPAGSA 96 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G G I P G ++L+V+W Sbjct: 97 LLGLAAGQAIDWRTPEGSAIRLQVLEVVW 125 >gi|260597037|ref|YP_003209608.1| nucleoside diphosphate kinase regulator [Cronobacter turicensis z3032] gi|260216214|emb|CBA29098.1| Regulator of nucleoside diphosphate kinase [Cronobacter turicensis z3032] Length = 136 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA ++ M D + + V + SG+ +V Q A +S+ +P Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGNSPEALSVMAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G +GD I P G +T+ E+L++L+ Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126 >gi|306841739|ref|ZP_07474425.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2] gi|306288144|gb|EFM59531.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2] Length = 169 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|319426662|gb|ADV54736.1| regulator of nucleoside diphosphate kinase, Rnk [Shewanella putrefaciens 200] Length = 135 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N G+MA LE + RAE++ + M + + + V +S D ++V ++A+ + Sbjct: 26 NAFPGKMA-LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE 84 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +SI +P+ AL+G GD I PGG Sbjct: 85 -GTISILAPVGSALLGLSQGDDIEWPGPGG 113 >gi|237748358|ref|ZP_04578838.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13] gi|229379720|gb|EEO29811.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13] Length = 130 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 46 NAEYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 + +Y+ ++ LN+ R + EL++ + RA V++ + D I +T +++ S + Sbjct: 11 SCDYERLTQMLMLNKYRTLPGIDELQDELDRANVVEPEELPNDVITINSTARFLDETSNE 70 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +V +AD + +S+ +P+ AL+G +G I PG +K +L+VL Sbjct: 71 QFEITLVYPDKADGATK-ISVLAPVGSALLGMSVGQSIPWQVPGRQKL--LLKVL 122 >gi|302755804|ref|XP_002961326.1| hypothetical protein SELMODRAFT_403115 [Selaginella moellendorffii] gi|300172265|gb|EFJ38865.1| hypothetical protein SELMODRAFT_403115 [Selaginella moellendorffii] Length = 413 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 14/107 (13%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+GF ++ +E+ + E+ P + + + + A+ +L E E + K L N ++ + + Sbjct: 321 TSQGFPRVLEEILY--TEKNPEVARLMFQFEAFCNLVEPNE-KTCKLLAN----KLLQKD 373 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 +I VID + + SL+EK+ GD++N + GD+E+D Sbjct: 374 MVIEAQFVIDTCCRTHPK-------SLIEKDFGDEENEEHFGDEESD 413 >gi|256829378|ref|YP_003158106.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM 4028] gi|256578554|gb|ACU89690.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM 4028] Length = 137 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 39/83 (46%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE + RA ++D + + +TV +G++ +V D Q +SI Sbjct: 33 AALEEELDRARIVDPKNVPPTVVTMNSTVKFKLMPAGEEFCLTLVYPGRVDDQGTTISIL 92 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G LGD I PGG Sbjct: 93 APVGSALLGLSLGDEIQWPRPGG 115 >gi|114328079|ref|YP_745236.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] gi|114316253|gb|ABI62313.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] Length = 164 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 A+++ + + + +AFG TV L K G Y+IVG+ EAD + GL+S +SP Sbjct: 80 AQLVPTAPENAEEVAFGDTVKL--KLGGRTVTYRIVGEDEADPKQGLISYASP 130 >gi|254695666|ref|ZP_05157494.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] gi|261216066|ref|ZP_05930347.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] gi|260917673|gb|EEX84534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] Length = 169 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|23500358|ref|NP_699798.1| nucleoside diphosphate kinase regulator [Brucella suis 1330] gi|62317530|ref|YP_223383.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 1 str. 9-941] gi|161620676|ref|YP_001594562.1| nucleoside diphosphate kinase regulator [Brucella canis ATCC 23365] gi|225629104|ref|ZP_03787137.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo] gi|254691027|ref|ZP_05154281.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|254698811|ref|ZP_05160639.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254699850|ref|ZP_05161678.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|254702988|ref|ZP_05164816.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|254705890|ref|ZP_05167718.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|254711118|ref|ZP_05172929.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|254712423|ref|ZP_05174234.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|254715495|ref|ZP_05177306.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|254732258|ref|ZP_05190836.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|256015391|ref|YP_003105400.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915] gi|256029499|ref|ZP_05443113.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|256157694|ref|ZP_05455612.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|256253334|ref|ZP_05458870.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|256256212|ref|ZP_05461748.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|260167410|ref|ZP_05754221.1| nucleoside diphosphate kinase regulator [Brucella sp. F5/99] gi|260568099|ref|ZP_05838568.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260756623|ref|ZP_05868971.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|260760053|ref|ZP_05872401.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|260763292|ref|ZP_05875624.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882440|ref|ZP_05894054.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|261217230|ref|ZP_05931511.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|261220450|ref|ZP_05934731.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|261313320|ref|ZP_05952517.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|261318709|ref|ZP_05957906.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|261320101|ref|ZP_05959298.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|261750323|ref|ZP_05994032.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|261753597|ref|ZP_05997306.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|261756820|ref|ZP_06000529.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|265986507|ref|ZP_06099064.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|265996199|ref|ZP_06108756.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|294853589|ref|ZP_06794261.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026] gi|297249569|ref|ZP_06933270.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5 str. B3196] gi|23463975|gb|AAN33803.1| transcriptional regulator Rnk, putative [Brucella suis 1330] gi|62197723|gb|AAX76022.1| hypothetical Rnk transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|161337487|gb|ABX63791.1| GreA/GreB family elongation factor [Brucella canis ATCC 23365] gi|225615600|gb|EEH12649.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo] gi|255998051|gb|ACU49738.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915] gi|260154764|gb|EEW89845.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260670371|gb|EEX57311.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|260673713|gb|EEX60534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676731|gb|EEX63552.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|260871968|gb|EEX79037.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|260919034|gb|EEX85687.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|260922319|gb|EEX88887.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|261292791|gb|EEX96287.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|261297932|gb|EEY01429.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|261302346|gb|EEY05843.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|261736804|gb|EEY24800.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|261740076|gb|EEY28002.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|261743350|gb|EEY31276.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|262550496|gb|EEZ06657.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|264658704|gb|EEZ28965.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|294819244|gb|EFG36244.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026] gi|297173438|gb|EFH32802.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5 str. B3196] Length = 169 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|159043110|ref|YP_001531904.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] gi|157910870|gb|ABV92303.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] Length = 143 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 39/63 (61%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA ++ S M + ++ G+ V+ ++ +G +K+ +V +EAD+ VS+++PI A Sbjct: 50 IARARIVAPSKMPKNVVSMGSRVTYRDEATGQEKSVTLVYPEEADIARLRVSVTTPIGVA 109 Query: 130 LIG 132 L+G Sbjct: 110 LLG 112 >gi|254720401|ref|ZP_05182212.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|265985419|ref|ZP_06098154.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|306839022|ref|ZP_07471843.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653] gi|264664011|gb|EEZ34272.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|306405928|gb|EFM62186.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653] Length = 170 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|83269510|ref|YP_418801.1| nucleoside diphosphate kinase regulator [Brucella melitensis biovar Abortus 2308] gi|189022785|ref|YP_001932526.1| nucleoside diphosphate kinase regulator [Brucella abortus S19] gi|237817078|ref|ZP_04596070.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308 A] gi|260544766|ref|ZP_05820587.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|82939784|emb|CAJ12792.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189021359|gb|ACD74080.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237787891|gb|EEP62107.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308 A] gi|260098037|gb|EEW81911.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] Length = 169 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|217969327|ref|YP_002354561.1| GreA/GreB family elongation factor [Thauera sp. MZ1T] gi|217506654|gb|ACK53665.1| GreA/GreB family elongation factor [Thauera sp. MZ1T] Length = 135 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 +G AELE RA+V + M D I + VE+ +G + + ++A+ ++ Sbjct: 31 DGLRAELE----RADVREPQDMPADVITMNSRARFVEEGTGREYELTLAYPKDANAEAHR 86 Query: 120 VSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQVLW 157 VSI SP AL+G G I +A G E ++L+V W Sbjct: 87 VSIFSPAGSALLGLSAGQSIDWKSADGKEIRLKVLEVTW 125 >gi|330830261|ref|YP_004393213.1| transcription elongation factor GreA/GreB [Aeromonas veronii B565] gi|328805397|gb|AEB50596.1| Transcription elongation factor GreA/GreB [Aeromonas veronii B565] Length = 131 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAE+ + + M D + + V ++SG++ +V ++A +S+ +P Sbjct: 29 LQEELDRAEIREPADMPPDVVTMNSKVRFKMQSSGNEFCLTLVYPRDAKGDESNISVLAP 88 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G ++GD I+ P G EIL+V++ Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121 >gi|306845947|ref|ZP_07478514.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1] gi|306273582|gb|EFM55427.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1] Length = 169 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|319653573|ref|ZP_08007672.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2] gi|317394772|gb|EFV75511.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 ++ G V+++ D+++Y I ++D +G +S SP+ R L+ K +G+ S+ P Sbjct: 71 KVLIGTKVTVLFDGEDDREDYHICLPDQSDPDNGCISFLSPVGRQLLLKNMGEQTSLIIP 130 Query: 145 GGE 147 G+ Sbjct: 131 SGQ 133 >gi|113969979|ref|YP_733772.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|114047214|ref|YP_737764.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113884663|gb|ABI38715.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|113888656|gb|ABI42707.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 135 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N GR A LE + RA+++ + M G+ + + V +S D ++V ++A Sbjct: 26 NAFPGRTA-LEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKDA-TG 83 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +SI +P+ AL+G GD I PGG Sbjct: 84 EGTISILAPVGSALLGLSQGDEIEWPGPGG 113 >gi|227328600|ref|ZP_03832624.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 79 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL 43 + + P+T +G +K+++EL + RP II AI+EAR +GDL Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDL 42 >gi|159042970|ref|YP_001531764.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] gi|157910730|gb|ABV92163.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] Length = 148 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA ++ + M + I G + + ++ +G ++ +V ++AD+ VS+ +PI A Sbjct: 53 IARARIVPAAKMPLNVIGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTPIGVA 112 Query: 130 LIGKELGDIISVNAPGGEK 148 L+G G + N G E+ Sbjct: 113 LLGLAEGAVFHWNTRGEER 131 >gi|149243253|pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243254|pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243255|pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243256|pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea Length = 141 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 QN GR +LE + RAEV+D + + +TV ++S ++ +V ++ D Sbjct: 28 QNAFPGR-DDLEAELARAEVVDPEEIPPTVVTXNSTVRFRVESSAEEFXLTLVYPKDVDT 86 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146 +SI +P+ AL+G GD I PGG Sbjct: 87 SGEKISILAPVGSALLGLAQGDEIEWPKPGG 117 >gi|84499314|ref|ZP_00997602.1| putative nucleoside diphosphate kinase regulator [Oceanicola batsensis HTCC2597] gi|84392458|gb|EAQ04669.1| putative nucleoside diphosphate kinase regulator [Oceanicola batsensis HTCC2597] Length = 147 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA ++ + + + +A G V+ ++ +G +K V ++AD+ G +SI +PI A Sbjct: 49 IGRARIVPAAKLPQNVVAIGRAVTYRDETTGQEKRVTPVFPEDADIARGRISILTPIGVA 108 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158 LIG G + + GE+ +L VL + Sbjct: 109 LIGLAEGASLHWDTRDGER--RVLTVLHV 135 >gi|332186877|ref|ZP_08388619.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Sphingomonas sp. S17] gi|332013210|gb|EGI55273.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Sphingomonas sp. S17] Length = 154 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL TRA +++ D + G+ V++ + +G K IVG EAD ++ + Sbjct: 63 ELRYWNTRAATAELAPAPAEDEVGIGSVVTI--RLNGQTKALTIVGHDEADPSQDRIAYA 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +P+ARAL+G G++++ G EIL V Sbjct: 121 APLARALMGAMAGEMVAFG--GKADAVEILDV 150 >gi|260430269|ref|ZP_05784243.1| GreA/GreB family elongation factor [Citreicella sp. SE45] gi|260418741|gb|EEX11997.1| GreA/GreB family elongation factor [Citreicella sp. SE45] Length = 147 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA ++ + + + +A G V+ ++++G +K V ++AD+ G +SI +PI A Sbjct: 49 IGRARIVPAAKLPQNVVAIGRAVTYRDESNGQEKTVTPVFPEDADIARGRISILTPIGVA 108 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158 LIG G + + GE+ +L VL + Sbjct: 109 LIGLAEGASLHWDTRDGER--RVLTVLHV 135 >gi|310822870|ref|YP_003955228.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1] gi|309395942|gb|ADO73401.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1] Length = 144 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + L+ +LE + RA V+ + D + + V + ++G ++ +V +E Sbjct: 29 RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 88 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 A++ VSI +P+ A++G ++GDII P IL+VL+ Sbjct: 89 ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 134 >gi|315127894|ref|YP_004069897.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp. SM9913] gi|315016408|gb|ADT69746.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp. SM9913] Length = 137 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 42/82 (51%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + RA +++ + + +TV+ V +++G++ +V + D +SI + Sbjct: 34 ELEAELGRANIVEPHEVPSTVVTMNSTVNFVVESTGEEFTLTLVYPKNIDSSGNKISILA 93 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G GD I PGG Sbjct: 94 PVGSALLGLSQGDQIEWPKPGG 115 >gi|70733293|ref|YP_263067.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens Pf-5] gi|68347592|gb|AAY95198.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens Pf-5] Length = 137 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E++SG + +V Q+A+ G +SI +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREESSGKDYHLTLVYPQDANADEGKISILAPVGSALLGLQVGQYIDWPAPG 114 Query: 146 GE 147 G+ Sbjct: 115 GK 116 >gi|115377129|ref|ZP_01464343.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca DW4/3-1] gi|115365838|gb|EAU64859.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca DW4/3-1] Length = 149 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + L+ +LE + RA V+ + D + + V + ++G ++ +V +E Sbjct: 34 RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 93 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 A++ VSI +P+ A++G ++GDII P IL+VL+ Sbjct: 94 ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 139 >gi|297581555|ref|ZP_06943478.1| transcription elongation factor GreB [Vibrio cholerae RC385] gi|297534393|gb|EFH73231.1| transcription elongation factor GreB [Vibrio cholerae RC385] Length = 47 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 30/42 (71%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 +T G++K++QEL + +E+RP I + +S A + GD SENA+ Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENAD 47 >gi|15964020|ref|NP_384373.1| nucleoside diphosphate kinase regulator [Sinorhizobium meliloti 1021] gi|307301166|ref|ZP_07580928.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|307321067|ref|ZP_07600472.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|15073196|emb|CAC41704.1| Putative regulator of nucleoside diphosphate kinase [Sinorhizobium meliloti 1021] gi|306893239|gb|EFN24020.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306903622|gb|EFN34209.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 135 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A + ++ E ++EL+ RA + + D + G+TV+ + ++G K ++V Sbjct: 29 SALDRVPDVAEALLSELD----RARIAAPGKLPKDSVQMGSTVAF-DADNGFAKEVRLVY 83 Query: 110 DQEADVQSGLVSISSPIARALIGKELG 136 EAD+++G +S+ +PI ALIG +G Sbjct: 84 PGEADIEAGKISVLTPIGAALIGLSVG 110 >gi|229593308|ref|YP_002875427.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens SBW25] gi|229365174|emb|CAY53437.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens SBW25] Length = 136 Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++ + RAE V+ + + ++V E+ SG + +V ++A+ G +SI + Sbjct: 33 LQHELDRAEEVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDANADEGKISILA 92 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 P+ AL+G ++G I APGG+ E+L V Sbjct: 93 PVGSALLGLKVGQHIDWPAPGGKTLKLELLSV 124 >gi|114332047|ref|YP_748269.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91] gi|114309061|gb|ABI60304.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91] Length = 137 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 Q++ GR +LE + RA+V+D + + +TV ++S ++ +V ++ D Sbjct: 26 QSVFPGR-DDLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT 84 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146 +SI +P+ AL+G GD I PGG Sbjct: 85 SGEKISILAPVGSALLGLSQGDEIEWPKPGG 115 >gi|121998926|ref|YP_001003713.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1] gi|121590331|gb|ABM62911.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1] Length = 137 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 44/82 (53%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN + RAE+++ + + + +TV + + ++ + +V ++ D G +SI + Sbjct: 34 DLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFA 93 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G G+ I PGG Sbjct: 94 PVGSALLGLSQGEEIEWPRPGG 115 >gi|117920161|ref|YP_869353.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] gi|117612493|gb|ABK47947.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] Length = 135 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N GR A LE + RA+++ + M G+ + + V +S D ++V ++A Sbjct: 26 NAFPGRAA-LEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKDA-AG 83 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +SI +P+ AL+G GD I PGG Sbjct: 84 EGTISILAPVGSALLGLSQGDEIEWPGPGG 113 >gi|119387447|ref|YP_918481.1| nucleoside diphosphate kinase regulator [Paracoccus denitrificans PD1222] gi|119378022|gb|ABL72785.1| GreA/GreB family elongation factor [Paracoccus denitrificans PD1222] Length = 137 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%) Query: 55 LQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 L+ L E MA + + RA V+ + M D G+ V+ ++ +G ++ + Sbjct: 19 LERLAEAAMARNPELADRLLAELARARVLPPARMPADVAGIGSAVTFRDETTGREQTVVL 78 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 V ++AD+ + S+ +PI ALIG G + + GE Sbjct: 79 VWPEDADIAAARASVLTPIGVALIGLRAGARFTWDTRAGE 118 >gi|320352605|ref|YP_004193944.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM 2032] gi|320121107|gb|ADW16653.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM 2032] Length = 137 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L +++ V+ M + + + V L + + G+ +V +E D Q VSI S Sbjct: 36 KLHYDMSQGHVVSAGEMPSNVVTTHSWVVLCDLSDGEVFGLTLVFPEEVDSQGNRVSILS 95 Query: 125 PIARALIGKELGDIISVNAPGG 146 I ALIG++ GD I+ + P G Sbjct: 96 SIGAALIGRQKGDTIAYSTPSG 117 >gi|293606854|ref|ZP_06689202.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814706|gb|EFF73839.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 140 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 8/130 (6%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88 ++I A+ AR G ++ A L+ + + ++ A +I I ++ D I Sbjct: 8 KLITALDHARLLGMITRPASAA------TLSRDAIDAAQELLDSAPIIPIEEVTPDIITM 61 Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG-GE 147 + V L+ + GD+ + +A++ G VS+ SP+ +LIG G +++ AP E Sbjct: 62 RSRVRLL-NDKGDEMVVTLCYPADANLAQGQVSVMSPLGLSLIGSRTGQLVTWTAPNQTE 120 Query: 148 KTYEILQVLW 157 + I ++L+ Sbjct: 121 HSASIEEILY 130 >gi|317494056|ref|ZP_07952472.1| prokaryotic transcription elongation factor [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917829|gb|EFV39172.1| prokaryotic transcription elongation factor [Enterobacteriaceae bacterium 9_2_54FAA] Length = 136 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L N + RAE++ M D + + V + +S ++ +V + +S+ +P Sbjct: 34 LNNELDRAEMLSPENMPADVVTMNSRVKFRDLSSKEEHVRTLVYPASLKDSAAELSVMAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 I AL+G +GD I P G+ T+ E+L++ + Sbjct: 94 IGAALLGLRVGDAIQWELPNGQTTHIEVLELQY 126 >gi|312963811|ref|ZP_07778282.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] gi|311281846|gb|EFQ60456.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] Length = 136 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%) Query: 62 RMAELENIIT-------RAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 RM E + +T RAE V+ + + ++V E+ SG + +V ++A Sbjct: 22 RMGETQPGVTALQAELDRAEAVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDA 81 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 + G +SI +P+ AL+G ++G I APGG+ E+L V Sbjct: 82 NADEGKISILAPVGSALLGLQVGQHIDWPAPGGKTLKLELLSV 124 >gi|253997382|ref|YP_003049446.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] gi|253984061|gb|ACT48919.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] Length = 125 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 44/78 (56%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 ++RA V+ + D + + V ++++SG + ++V + AD++ G +S+ SP+ A Sbjct: 30 LSRAIVVPADQVPADVVRINSRVIYLDESSGLSREVELVFPEGADLKFGKISVLSPVGSA 89 Query: 130 LIGKELGDIISVNAPGGE 147 L+G + G +I P G+ Sbjct: 90 LLGLKEGQVIDWPFPHGQ 107 >gi|254670249|emb|CBA05481.1| Transcription elongation factor [Neisseria meningitidis alpha153] Length = 40 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 30/40 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++G Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHG 40 >gi|299065804|emb|CBJ36982.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CMR15] Length = 138 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V V +G + + +V EA++ + +S+ SP Sbjct: 37 VDDLIARANVVPGDRIPADVVTMNSVVR-VHAGAGTAQAWTLVYPDEANLAAARLSVLSP 95 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + AL+G +GD + AP G Sbjct: 96 MGAALLGGRVGDEVHYAAPDGST 118 >gi|218549803|ref|YP_002383594.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii ATCC 35469] gi|218357344|emb|CAQ89981.1| regulator of nucleoside diphosphate kinase [Escherichia fergusonii ATCC 35469] gi|324114743|gb|EGC08711.1| hypothetical protein ERIG_00737 [Escherichia fergusonii B253] gi|325498198|gb|EGC96057.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii ECD227] Length = 136 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDMLLEQPAYAGLPIADALN----AELD----RAQMCSPETMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 TSTHLEVLEL 124 >gi|77461715|ref|YP_351222.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens Pf0-1] gi|77385718|gb|ABA77231.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens Pf0-1] Length = 136 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + D + + V E++SG + +V + A+ G VSI +P+ AL+G ++G I Sbjct: 49 VPADVVTMNSRVHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHID 108 Query: 141 VNAPGGE 147 APGG+ Sbjct: 109 WPAPGGK 115 >gi|125975505|ref|YP_001039415.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC 27405] gi|256004207|ref|ZP_05429190.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM 2360] gi|281419462|ref|ZP_06250476.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|125715730|gb|ABN54222.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC 27405] gi|255991797|gb|EEU01896.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM 2360] gi|281406868|gb|EFB37132.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|316939625|gb|ADU73659.1| transcription elongation factor GreA/GreB domain-containing protein [Clostridium thermocellum DSM 1313] Length = 160 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 34 ISEARAYGDLSENAEY-QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATV 92 +SE D+ N Y + KE N E L+ I + + + + F Sbjct: 18 VSEIEKERDMLLNEHYAEETKESINFQEFFKNYLDRINSYLNTVRVDKNGSEACPFVIIN 77 Query: 93 SLVEKNSGD---KKNYQIV--GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 S+VE + K Y+IV +E D S SP+ RAL+ K + D +SV P G Sbjct: 78 SIVEVFDCEEEEKCKYRIVLPFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGM 137 Query: 148 KTYEILQV 155 Y IL + Sbjct: 138 LHYTILDI 145 >gi|325104691|ref|YP_004274345.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] gi|324973539|gb|ADY52523.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] Length = 135 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AELE +AEV+ T+ ++ + + E+ SG + + +V ++A + +SI Sbjct: 43 AELE----KAEVLTEKTLPEGFVSVNTKLKIEEEQSGKELEFILVEPKKAKQKLNKLSIL 98 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SPI AL G + GD +S P G + Y I +V Sbjct: 99 SPIGVALAGYKSGDKVSWEMPDGIRNYFIKEV 130 >gi|163844766|ref|YP_001622421.1| nucleoside diphosphate kinase regulator [Brucella suis ATCC 23445] gi|163675489|gb|ABY39599.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 169 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +S +PI ALIG G IS A G++ +L+V+ Sbjct: 82 PGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129 >gi|311280477|ref|YP_003942708.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1] gi|308749672|gb|ADO49424.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1] Length = 136 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA++ +M D ++ + V + +G+++ +V + S +S+ +P Sbjct: 34 LNDELDRAQMCAPESMPHDVVSMNSKVRFRDLTTGEERVRTLVFPTQMTDSSTQLSVLAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + AL+G +G I P G T+ E+L++L+ Sbjct: 94 VGAALLGLRVGSTIHWELPNGTATHLEVLELLY 126 >gi|255535437|ref|YP_003095808.1| transcription elongation factor [Flavobacteriaceae bacterium 3519-10] gi|255341633|gb|ACU07746.1| transcription elongation factor [Flavobacteriaceae bacterium 3519-10] Length = 170 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 17/124 (13%) Query: 24 QEERPRIIKAISEARAYGDL-SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 +++ RI K+I +A+ + +E+AE + L+ L+ ++ E +I Sbjct: 42 KQDSTRIHKSIMDAKKNNSIKAEDAE----RLLRELHSAKIVESADI------------P 85 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 D + + V + +N+ ++IV ++A+++ +SI SP+A ALIG + D I Sbjct: 86 ADVVTMNSVVKIHFENNKTVTEFKIVYPEQANIKDRKISIFSPVAAALIGYSVNDEIDWI 145 Query: 143 APGG 146 P G Sbjct: 146 VPSG 149 >gi|58427865|gb|AAW76902.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 252 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 37/82 (45%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P Sbjct: 150 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 209 Query: 126 IARALIGKELGDIISVNAPGGE 147 + AL G +G I P G Sbjct: 210 VGSALGGLSVGQRIDWRTPDGR 231 >gi|118580491|ref|YP_901741.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] gi|118503201|gb|ABK99683.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] Length = 172 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 10/78 (12%) Query: 86 IAFGATVSLVEKNSGDKKNYQI--------VGDQEADVQSGLVSISSPIARALIGKELGD 137 I A V+L + G KN I V DQ +V +++ +SP+ R+LIG++ GD Sbjct: 96 IRLTALVTLRAGDDGTAKNVFIGPREGGLKVMDQGEEVM--VITPASPLGRSLIGRQQGD 153 Query: 138 IISVNAPGGEKTYEILQV 155 I + G + YEI+QV Sbjct: 154 CIETGSGAGIREYEIVQV 171 >gi|13473408|ref|NP_104975.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti MAFF303099] gi|14024157|dbj|BAB50761.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti MAFF303099] Length = 140 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 RA V D + M D + G+ V+ V G + +V EAD+ +S+ +P+ ALI Sbjct: 47 RAVVTDAAAMPADVVRMGSAVT-VRGEGGATQRIMLVYPGEADIAENRISVLTPMGTALI 105 Query: 132 GKELGDIISVNAPGGEK 148 G +G + ++ GG + Sbjct: 106 GASIGQAVCWSSRGGRE 122 >gi|122879281|ref|YP_202287.6| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 143 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 37/81 (45%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P Sbjct: 41 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL G +G I P G Sbjct: 101 VGSALGGLSVGQRIDWRTPDG 121 >gi|84625107|ref|YP_452479.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369047|dbj|BAE70205.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 143 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 37/81 (45%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P Sbjct: 41 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL G +G I P G Sbjct: 101 VGSALGGLSVGQRIDWRTPDG 121 >gi|229817908|ref|ZP_04448190.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM 20098] gi|229784512|gb|EEP20626.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM 20098] Length = 44 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 25/35 (71%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41 +T + +DK+Q+EL+WR+ E R II +S ARA G Sbjct: 10 LTQEAYDKMQEELKWREGEYRDEIIAKVSAARAEG 44 >gi|330964215|gb|EGH64475.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 135 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCCEEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + G VS+ +P+ ALIG ++G I APGG+ Sbjct: 84 AE-GTVSVLAPMGSALIGLQVGQHIDWPAPGGK 115 >gi|94499055|ref|ZP_01305593.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter sp. RED65] gi|94428687|gb|EAT13659.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter sp. RED65] Length = 135 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 55 LQNLNEGRM---AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 L+ L +G + +ELE+ + RA +++ + + + ++ + V ++ + +V + Sbjct: 19 LETLPKGHVMGGSELEDELDRANLVEPTEIPPNIVSMNSKVKFEVVSTNQEFELTLVYPK 78 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + D + +SI +P+ AL+G +GD I ++PGG Sbjct: 79 DLDQEGKTISILAPVGSALLGLSIGDSIEWSSPGG 113 >gi|226941111|ref|YP_002796185.1| Transcription elongation factor [Laribacter hongkongensis HLHK9] gi|226716038|gb|ACO75176.1| Transcription elongation factor [Laribacter hongkongensis HLHK9] Length = 135 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RA+V+D M + + V + +G + +Q+ ++ +S+ + Sbjct: 33 QLETELARADVVDPQDMPAGVVTMNSRVRFADA-AGATREFQLCYPKDMTGSPDQLSVLA 91 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ AL+G G I P GG +L V+W Sbjct: 92 PVGAALLGLSAGQAIDWPLPDGGHTRLTVLDVVW 125 >gi|120598560|ref|YP_963134.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1] gi|146293361|ref|YP_001183785.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|120558653|gb|ABM24580.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1] gi|145565051|gb|ABP75986.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 135 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N G+ A LE + RAE++ + M + + + V +S D ++V ++A+ + Sbjct: 26 NAFPGKTA-LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE 84 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +SI +P+ AL+G GD I PGG Sbjct: 85 -GTISILAPVGSALLGLSQGDDIEWPGPGG 113 >gi|18034019|gb|AAL57322.1|AF395125_3 GreA [Borrelia hermsii] Length = 81 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + FG V+++ K++G ++ Y I G E++ G++S SP L+ + GD Sbjct: 6 VGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDAKEGD 57 >gi|326318708|ref|YP_004236380.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375544|gb|ADX47813.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 139 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSL----VEKNSGDKKNYQIVGDQEADVQSGL 119 A L +++ A+V + D + + V L + G ++ + Q+AD +G Sbjct: 31 ASLADLLATADVTGSRAVDADVVTMNSRVELEGSGTDGADGARQVLTLCYPQDADAAAGR 90 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT 149 VS+ SP+ +L+G +GD+ + P GE Sbjct: 91 VSVLSPVGCSLLGLRVGDVAAWRTPQGEDC 120 >gi|51892882|ref|YP_075573.1| putative transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51856571|dbj|BAD40729.1| putative transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 154 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + V+LV++ G ++ Y +V +E D G +S SP+ AL+ K + D + ++A Sbjct: 76 DVVFMDVPVTLVDETDGTEEVYTVVLPEEGDPAKGHISCLSPLGLALLLKRVNDRVVIDA 135 Query: 144 PGGEKTYEILQV 155 PGG TY I V Sbjct: 136 PGGRFTYRIAAV 147 >gi|17547355|ref|NP_520757.1| regulator of nucleoside diphosphate kinase transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429658|emb|CAD16343.1| putative regulator of nucleoside diphosphate kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 134 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V V +G + + +V EA++ + +S+ SP Sbjct: 33 VDDLIVRANVVPGDRIPADVVTMNSVVR-VHAGAGTAQEWTLVYPDEANLAAARLSVLSP 91 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + AL+G GD + AP G Sbjct: 92 MGAALLGGRAGDEVHYAAPDGST 114 >gi|150398653|ref|YP_001329120.1| nucleoside diphosphate kinase regulator [Sinorhizobium medicae WSM419] gi|150030168|gb|ABR62285.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419] Length = 135 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A + + E + EL+ RA + + D + G+TV+ ++G K ++V Sbjct: 29 SALDRIPEVAEALLLELD----RARIAAPGKLPKDSVQMGSTVAF-HADNGFAKEVRLVY 83 Query: 110 DQEADVQSGLVSISSPIARALIGKELG 136 EAD+++G +S+ +PI ALIG +G Sbjct: 84 PGEADIEAGKISVLTPIGAALIGLSVG 110 >gi|56675424|emb|CAA83788.2| transcription elongation factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 44 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 23/30 (76%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQ 56 RP++I+ + EAR GDLSENA+Y AA+ Q Sbjct: 8 RPKVIEELVEARNQGDLSENADYDAARNRQ 37 >gi|24373499|ref|NP_717542.1| regulator of nucleoside diphosphate kinase [Shewanella oneidensis MR-1] gi|24347802|gb|AAN54986.1|AE015637_2 regulator of nucleoside diphosphate kinase [Shewanella oneidensis MR-1] Length = 135 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N GR A LE + RA+++ + M + + + V +S D ++V ++A Sbjct: 26 NAFPGR-AALEAELDRADIVPAAQMPANVVTMNSEVKFRVSSSNDTFCLRLVYPKDA-TG 83 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146 G +SI +P+ AL+G GD I PGG Sbjct: 84 EGTISILAPVGSALLGLSQGDQIEWPGPGG 113 >gi|82702067|ref|YP_411633.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] gi|82410132|gb|ABB74241.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 137 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 40/83 (48%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL+ + RAE+++ + + +TV +SG +V ++ D +S+ Sbjct: 33 AELQAELERAEIVEPEQIPPTVVTMNSTVRFSIDSSGQDFRLTLVYPKDVDGSGNKISVL 92 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G GD I PGG Sbjct: 93 APVGSALLGLSTGDEIEWPRPGG 115 >gi|188575425|ref|YP_001912354.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519877|gb|ACD57822.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 215 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 37/82 (45%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P Sbjct: 113 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 172 Query: 126 IARALIGKELGDIISVNAPGGE 147 + AL G +G I P G Sbjct: 173 VGSALGGLSVGQRIDWRTPDGR 194 >gi|62179216|ref|YP_215633.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582450|ref|YP_002636248.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126849|gb|AAX64552.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466977|gb|ACN44807.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713681|gb|EFZ05252.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 136 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 TSTHLEVLEL 124 >gi|148558514|ref|YP_001257600.1| nucleoside diphosphate kinase regulator [Brucella ovis ATCC 25840] gi|148369799|gb|ABQ62671.1| putative transcriptional regulator Rnk [Brucella ovis ATCC 25840] Length = 146 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A++ + + E MAEL+ A+V+ + + + G+TV N G ++ +V Sbjct: 4 NASERFEEIAEELMAELDC----AKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 58 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD+ +SI +PI ALIG G IS A G++ +L+V+ Sbjct: 59 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 106 >gi|304310570|ref|YP_003810168.1| transcription elongation factor GreA/GreB [gamma proteobacterium HdN1] gi|301796303|emb|CBL44511.1| transcription elongation factor GreA/GreB [gamma proteobacterium HdN1] Length = 137 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + RA V++ + + + V ++S D+ +V ++ D +SI S Sbjct: 34 ELEAELDRANVVEPHEVPPTVVTMNSKVKFNVESSSDEFELTLVYPKDMDASGKTISILS 93 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G GD I PGG Sbjct: 94 PVGSALLGLSQGDEIEWPKPGG 115 >gi|283834084|ref|ZP_06353825.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae ATCC 29220] gi|291070230|gb|EFE08339.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae ATCC 29220] Length = 136 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN AEL+ RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALN----AELD----RAQMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY 150 T+ Sbjct: 115 TSTH 118 >gi|162450982|ref|YP_001613349.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum 'So ce 56'] gi|161161564|emb|CAN92869.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum 'So ce 56'] Length = 140 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE I RA+V+ + + + + + V LV+ ++ ++ +V ADV+SG +S+ +P Sbjct: 39 LEIEIERADVVKPADIPPNVVTMNSRVELVDLDTEERLCVTVVFPGNADVKSGRISVLAP 98 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G D + P + I ++ + Sbjct: 99 MGLALLGCREADEVEWPTPSRTRRLRIERIAY 130 >gi|298292903|ref|YP_003694842.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296929414|gb|ADH90223.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 142 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%) Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99 YG L++ A A ++ E E+E RA+V+ +T+ + G+TV + Sbjct: 20 YGRLTKLAT-AALDRFPDVAEELQIEME----RAQVLSTATIPEGVVQMGSTVEY-HSDV 73 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQV 155 ++ +V EAD+ G VSI +PI ALIG G I V+ G E +L+V Sbjct: 74 EQRRRITLVYPGEADIAEGRVSILTPIGAALIGLSAGQSIRWVSRDGREHVLTVLKV 130 >gi|59711263|ref|YP_204039.1| transcription elongation factor [Vibrio fischeri ES114] gi|59479364|gb|AAW85151.1| transcription elongation factor [Vibrio fischeri ES114] Length = 161 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 9/74 (12%) Query: 89 GATVSLVEKNSGDKKNYQIVGDQ-------EADVQSGLVSISSPIARALIGKELGDIISV 141 GA V+LV N D ++ +G D+ L++ S+P+ +A+IG+++GD + Sbjct: 89 GALVTLV--NQDDVESTFFIGPSAGGVKVAHQDLVFSLITPSAPLGKAMIGQQVGDEFEL 146 Query: 142 NAPGGEKTYEILQV 155 N G ++ YEI+ V Sbjct: 147 NLAGKKQQYEIIDV 160 >gi|114049385|ref|YP_739935.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113890827|gb|ABI44878.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 56 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 30/44 (68%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y+ Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYR 49 >gi|197334352|ref|YP_002155417.1| transcription elongation factor [Vibrio fischeri MJ11] gi|197315842|gb|ACH65289.1| transcription elongation factor [Vibrio fischeri MJ11] Length = 161 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 D+ L++ S+P+ +A+IG++LGD +N G ++ YEI+ V Sbjct: 119 DLVFSLITPSAPLGKAIIGQQLGDEFELNLAGKKQQYEIIDV 160 >gi|114563174|ref|YP_750687.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB 400] gi|114334467|gb|ABI71849.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB 400] Length = 137 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE + RA ++D + + +TV + S ++ +V ++ D++ +SI Sbjct: 32 ISELEEELARAIIVDPKEIPTTIVTMNSTVKFTVEASREEFLMTLVYPKDLDLKGDKISI 91 Query: 123 SSPIARALIGKELGDIISVNAPGG 146 +P+ AL+G GD I PGG Sbjct: 92 LAPVGSALLGLAQGDQIEWPKPGG 115 >gi|241765275|ref|ZP_04763255.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] gi|241365031|gb|EER59928.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] Length = 137 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL+ + RA+V+ + + + +TV +G + +V ++ D + +SI Sbjct: 33 AELQAELDRADVVAPEEIPPNVVTMNSTVQFTMLETGKEFCLTLVYPRDMDGSADRISIL 92 Query: 124 SPIARALIGKELGDIISVNAPGGE 147 +P+ AL+G +GD ++ PGG+ Sbjct: 93 APVGGALLGLSVGDELAWPGPGGK 116 >gi|258516280|ref|YP_003192502.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans DSM 771] gi|257779985|gb|ACV63879.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans DSM 771] Length = 135 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 53 KELQNLNEGRMA------ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 K L + EG A +LEN + RA ++D + D I + +L++ N D + Sbjct: 17 KILDKMPEGNQASDKSVKKLENELYRAIIVDSQQVPRDVITMNSK-ALLQLNDEDIE-VS 74 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +V ++AD+ + +SI SPI A++G + G+ I P G I ++L+ Sbjct: 75 LVYPEDADLGAMKLSIFSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILY 125 >gi|288962542|ref|YP_003452837.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510] gi|288914808|dbj|BAI76293.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510] Length = 166 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query: 62 RMAELENIIT----RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 R+ E+ +T RA VI+ ++ + GA V+ ++ +G ++ +V ++AD+ + Sbjct: 56 RLPEVYAYLTVELERAAVIEEGELATGVVTMGARVAFRDEVTGQERTVTLVYPRDADLAA 115 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 VS+ +PI ALIG G I+ GE +IL VL + Sbjct: 116 CRVSVLTPIGAALIGVAEGQSITWYTREGEA--KILTVLAV 154 >gi|161504212|ref|YP_001571324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865559|gb|ABX22182.1| hypothetical protein SARI_02319 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 136 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPSDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 ASTHLEVLEL 124 >gi|16759576|ref|NP_455193.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763993|ref|NP_459608.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142651|ref|NP_805993.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414248|ref|YP_151323.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161615176|ref|YP_001589141.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550854|ref|ZP_02344610.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990616|ref|ZP_02571716.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231621|ref|ZP_02656679.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236603|ref|ZP_02661661.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240457|ref|ZP_02665389.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260874|ref|ZP_02682847.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465785|ref|ZP_02699667.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450939|ref|YP_002044647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471151|ref|ZP_03077135.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735601|ref|YP_002113733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250140|ref|YP_002145589.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263195|ref|ZP_03163269.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363171|ref|YP_002142808.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245388|ref|YP_002214607.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390133|ref|ZP_03216744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930449|ref|ZP_03221379.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351905|ref|YP_002225706.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856082|ref|YP_002242733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023434|ref|ZP_03337881.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051866|ref|ZP_03344744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417566|ref|ZP_03350708.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425121|ref|ZP_03357871.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613069|ref|ZP_03370895.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647691|ref|ZP_03377744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850322|ref|ZP_03381220.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911567|ref|ZP_04655404.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829888|ref|ZP_06547376.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511993|pir||AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419127|gb|AAL19567.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501868|emb|CAD05093.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138282|gb|AAO69853.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128505|gb|AAV78011.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364540|gb|ABX68308.1| hypothetical protein SPAB_02944 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409243|gb|ACF69462.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457515|gb|EDX46354.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711103|gb|ACF90324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631988|gb|EDX50508.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094648|emb|CAR60171.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213843|gb|ACH51240.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241450|gb|EDY24070.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290337|gb|EDY29693.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939904|gb|ACH77237.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602578|gb|EDZ01124.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320383|gb|EDZ05586.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271686|emb|CAR36516.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324214|gb|EDZ12053.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330837|gb|EDZ17601.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334065|gb|EDZ20829.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339721|gb|EDZ26485.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349901|gb|EDZ36532.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707885|emb|CAR32173.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245889|emb|CBG23690.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992344|gb|ACY87229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157217|emb|CBW16704.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911647|dbj|BAJ35621.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084884|emb|CBY94674.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226194|gb|EFX51245.1| Regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613251|gb|EFY10194.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621321|gb|EFY18178.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623740|gb|EFY20578.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629012|gb|EFY25791.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631734|gb|EFY28488.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637530|gb|EFY34232.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641870|gb|EFY38500.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646715|gb|EFY43221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651415|gb|EFY47795.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653134|gb|EFY49468.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658854|gb|EFY55109.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664876|gb|EFY61069.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668878|gb|EFY65030.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670616|gb|EFY66749.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675357|gb|EFY71433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682172|gb|EFY78197.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684997|gb|EFY80994.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128933|gb|ADX16363.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193943|gb|EFZ79145.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197965|gb|EFZ83087.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201988|gb|EFZ87048.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207121|gb|EFZ92074.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211668|gb|EFZ96502.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214352|gb|EFZ99103.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221503|gb|EGA05917.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225547|gb|EGA09777.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231105|gb|EGA15221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234063|gb|EGA18152.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238242|gb|EGA22300.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242524|gb|EGA26548.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248499|gb|EGA32433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251285|gb|EGA35157.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259213|gb|EGA42856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261516|gb|EGA45095.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264803|gb|EGA48304.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272360|gb|EGA55767.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622360|gb|EGE28705.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626944|gb|EGE33287.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987561|gb|AEF06544.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 136 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 ASTHLEVLEL 124 >gi|113869543|ref|YP_728032.1| transcription elongation factor GreA [Ralstonia eutropha H16] gi|113528319|emb|CAJ94664.1| transcription elongation factor GreA [Ralstonia eutropha H16] Length = 139 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ RA ++ + D + + +N+ +V AD +G +S+ SP Sbjct: 37 LDSLLARATIVAPEEIPTDVVTMNTRLVCNLPGEQAPRNWTLVYPDAADFDAGRLSVLSP 96 Query: 126 IARALIGKELGDIISVNAPGGEK 148 + +AL+G G +S P G + Sbjct: 97 VGQALLGARAGQTVSYRLPDGRE 119 >gi|213584821|ref|ZP_03366647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 131 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 ASTHLEVLEL 124 >gi|27367044|ref|NP_762571.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus CMCP6] gi|320158922|ref|YP_004191300.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus MO6-24/O] gi|27358612|gb|AAO07561.1| Regulator of nucleoside diphosphate kinase [Vibrio vulnificus CMCP6] gi|319934234|gb|ADV89097.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus MO6-24/O] Length = 135 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQSGLVS 121 + +LEN + RA V+ M + + +TV S +V DQ + VS Sbjct: 31 LEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQVRNPDD--VS 88 Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 I +P+ AL+G +G ++ PGG EKT EIL+V + Sbjct: 89 IFAPVGSALLGLSVGQQLTWPMPGGAEKTIEILEVTY 125 >gi|168818764|ref|ZP_02830764.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344225|gb|EDZ30989.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 136 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIAYALN----AELD----RAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 ASTHLEVLEL 124 >gi|330501242|ref|YP_004378111.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina NK-01] gi|328915528|gb|AEB56359.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina NK-01] Length = 135 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 L +L+E G AE L+ + RAEV+ + + + V E++SG + +V Q+ Sbjct: 21 LDSLDEFGPGAEALQAELDRAEVVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQD 80 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 A G VSI +P+ AL+G +G I PGG++ Sbjct: 81 AG-GDGKVSILAPVGSALLGLSVGQHIDWPVPGGKQ 115 >gi|188583383|ref|YP_001926828.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] gi|179346881|gb|ACB82293.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] Length = 137 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + R +++ T GD G+ V + ++G ++ +V +AD+ G VSI +P Sbjct: 41 LSDELDRVQIVRGGTAEGDFARMGSRVDFRDNSTGRMQSVTLVYPGDADIAQGKVSILTP 100 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155 I ALIG G I GE + +L+V Sbjct: 101 IGAALIGLSKGQSIDWATRTGEIRRLTVLEV 131 >gi|166011342|ref|ZP_02232240.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. E1979001] gi|167420627|ref|ZP_02312380.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|165989726|gb|EDR42027.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. E1979001] gi|166961433|gb|EDR57454.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 150 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V ++ NS ++ +V + +S+ +P+ A Sbjct: 52 LDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 111 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G + D IS PGG++T +L++L+ Sbjct: 112 LLGLHVNDEISWKLPGGDETRITVLELLY 140 >gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae ATCC 10712] Length = 155 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 6 PVTSKGFDKIQQEL-RWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRM 63 P+++ + +++EL R + E + GD ++ A E Q EL L+ R+ Sbjct: 7 PISAAAREALERELDELRTEREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDR-RI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL + A V D + G+TV+ V G + QI G+ A + + +V+ Sbjct: 66 DELHGRLREAAVAGAPRT--DAVGVGSTVT-VRFEDGTETTVQI-GEVAAVLDATMVTAD 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ AL+G GD ++ P G T ++ + Sbjct: 122 SPLGGALLGHRAGDTVTYVTPQGRTTAVVVSL 153 >gi|304412090|ref|ZP_07393700.1| transcription elongation factor GreA/GreB domain-containing protein [Shewanella baltica OS183] gi|307305985|ref|ZP_07585731.1| transcription elongation factor GreA/GreB domain protein [Shewanella baltica BA175] gi|304349640|gb|EFM14048.1| transcription elongation factor GreA/GreB domain-containing protein [Shewanella baltica OS183] gi|306911478|gb|EFN41904.1| transcription elongation factor GreA/GreB domain protein [Shewanella baltica BA175] Length = 49 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 29/43 (67%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49 +T +G+ + +EL++ +E RP+I + EA A GD SENA++ Sbjct: 6 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADF 48 >gi|197104061|ref|YP_002129438.1| transcription elongation factor [Phenylobacterium zucineum HLK1] gi|196477481|gb|ACG77009.1| transcription elongation factor [Phenylobacterium zucineum HLK1] Length = 214 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 55 LQNL--NEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 L NL ++G AEL + RA V+ S + G+TV ++ + + ++V Sbjct: 107 LLNLADHDGPGAELLARELDRAIVVREGEKSRPFVRLGSTVEYRDRLTEKVRTVELVPPD 166 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 AD+ + +S+ SP+ AL+G +GD S AP G Sbjct: 167 AADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDG 201 >gi|49076904|gb|AAT49613.1| PA5274 [synthetic construct] Length = 135 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 L L+E G AE LE ++RA+V+ + + +TV E++SG K Y + Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77 Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147 DV G VSI +P+ AL+G +G I AP G+ Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113 >gi|83644422|ref|YP_432857.1| transcription elongation factor [Hahella chejuensis KCTC 2396] gi|83632465|gb|ABC28432.1| Transcription elongation factor [Hahella chejuensis KCTC 2396] Length = 160 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 9/79 (11%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEA------DVQSGLV-SISSPIARALIGKELG 136 D +A A V+L ++ +++ + VG + A D Q LV + SPI L+GK +G Sbjct: 83 DEVAVFALVTLEAEDGSERRLF--VGPEAAGFKFLLDEQEVLVITRRSPIGMKLMGKMVG 140 Query: 137 DIISVNAPGGEKTYEILQV 155 D++++ A GEK +EI+++ Sbjct: 141 DVVALVAGNGEKEFEIVEI 159 >gi|22124088|ref|NP_667511.1| nucleoside diphosphate kinase regulator [Yersinia pestis KIM 10] gi|45443579|ref|NP_995118.1| nucleoside diphosphate kinase regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597830|ref|YP_072021.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis IP 32953] gi|108809699|ref|YP_653615.1| nucleoside diphosphate kinase regulator [Yersinia pestis Antiqua] gi|108813637|ref|YP_649404.1| nucleoside diphosphate kinase regulator [Yersinia pestis Nepal516] gi|145597618|ref|YP_001161694.1| nucleoside diphosphate kinase regulator [Yersinia pestis Pestoides F] gi|153948732|ref|YP_001399422.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis IP 31758] gi|153997370|ref|ZP_02022470.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CA88-4125] gi|162421792|ref|YP_001605709.1| nucleoside diphosphate kinase regulator [Yersinia pestis Angola] gi|165928305|ref|ZP_02224137.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937429|ref|ZP_02225992.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. IP275] gi|166212183|ref|ZP_02238218.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167400655|ref|ZP_02306164.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167426754|ref|ZP_02318507.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468355|ref|ZP_02333059.1| regulator of nucleoside diphosphate kinase [Yersinia pestis FV-1] gi|170022744|ref|YP_001719249.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis YPIII] gi|186897022|ref|YP_001874134.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis PB1/+] gi|218930702|ref|YP_002348577.1| nucleoside diphosphate kinase regulator [Yersinia pestis CO92] gi|229836848|ref|ZP_04457013.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides A] gi|229839254|ref|ZP_04459413.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899819|ref|ZP_04514960.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. India 195] gi|229904131|ref|ZP_04519242.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|270488565|ref|ZP_06205639.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM D27] gi|294505286|ref|YP_003569348.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003] gi|21956837|gb|AAM83762.1|AE013616_8 regulator of nucleoside diphosphate kinase [Yersinia pestis KIM 10] gi|45438449|gb|AAS63995.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Microtus str. 91001] gi|51591112|emb|CAH22776.1| regulator of nucleoside diphosphate kinase [Yersinia pseudotuberculosis IP 32953] gi|108777285|gb|ABG19804.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|108781612|gb|ABG15670.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Antiqua] gi|115349313|emb|CAL22282.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CO92] gi|145209314|gb|ABP38721.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides F] gi|149289007|gb|EDM39087.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CA88-4125] gi|152960227|gb|ABS47688.1| regulator of nucleoside diphosphate kinase [Yersinia pseudotuberculosis IP 31758] gi|162354607|gb|ABX88555.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Angola] gi|165914534|gb|EDR33148.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. IP275] gi|165919693|gb|EDR37026.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. F1991016] gi|166206929|gb|EDR51409.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167050023|gb|EDR61431.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054281|gb|EDR64102.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749278|gb|ACA66796.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis YPIII] gi|186700048|gb|ACC90677.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis PB1/+] gi|229678249|gb|EEO74354.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|229687311|gb|EEO79386.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695620|gb|EEO85667.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705791|gb|EEO91800.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides A] gi|262363349|gb|ACY60070.1| nucleoside diphosphate kinase regulator [Yersinia pestis D106004] gi|262367273|gb|ACY63830.1| nucleoside diphosphate kinase regulator [Yersinia pestis D182038] gi|270337069|gb|EFA47846.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM D27] gi|294355745|gb|ADE66086.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003] gi|320017137|gb|ADW00709.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 136 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V ++ NS ++ +V + +S+ +P+ A Sbjct: 38 LDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G + D IS PGG++T +L++L+ Sbjct: 98 LLGLHVNDEISWKLPGGDETRITVLELLY 126 >gi|15600467|ref|NP_253961.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1] gi|107104376|ref|ZP_01368294.1| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2] gi|116053423|ref|YP_793748.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894376|ref|YP_002443246.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa LESB58] gi|254238029|ref|ZP_04931352.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa C3719] gi|254243839|ref|ZP_04937161.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 2192] gi|296392131|ref|ZP_06881606.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAb1] gi|313106689|ref|ZP_07792907.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 39016] gi|9951587|gb|AAG08659.1|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1] gi|115588644|gb|ABJ14659.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169960|gb|EAZ55471.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa C3719] gi|126197217|gb|EAZ61280.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 2192] gi|218774605|emb|CAW30422.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa LESB58] gi|310879409|gb|EFQ38003.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 39016] Length = 134 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 L L+E G AE LE ++RA+V+ + + +TV E++SG K Y + Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77 Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147 DV G VSI +P+ AL+G +G I AP G+ Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113 >gi|194444344|ref|YP_002039856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403007|gb|ACF63229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 136 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPVNMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 ASTHLEVLEL 124 >gi|110634551|ref|YP_674759.1| nucleoside diphosphate kinase regulator [Mesorhizobium sp. BNC1] gi|110285535|gb|ABG63594.1| GreA/GreB family elongation factor [Chelativorans sp. BNC1] Length = 135 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 L E ++ELE RA V++ + + + G+T++ + G+ + +V EAD+ Sbjct: 33 LAETMISELE----RARVVEDAALPDTVVRMGSTLTYT-ADDGEPQTVSLVYPGEADIAQ 87 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 G VS+++P+ ALIG + I A G Sbjct: 88 GRVSVTTPVGTALIGLSVNQTIDWTARDG 116 >gi|152985312|ref|YP_001351332.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PA7] gi|150960470|gb|ABR82495.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PA7] Length = 134 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 L L+E G AE LE ++RA+V+ + + +TV E++SG K Y + Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77 Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147 DV G VSI +P+ AL+G +G I AP G+ Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113 >gi|297625162|ref|YP_003706596.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] gi|297166342|gb|ADI16053.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] Length = 154 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 16/149 (10%) Query: 1 MVDKIPVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLS--ENAEYQAAKELQ 56 M ++ VT +G ++Q L+ +++ EE RI++ ++ + D S E+A+ + A+ Sbjct: 1 MTREVYVTPEGMRRLQATLQEEYKRLEEATRILQELTSSSDDYDDSGLEDAKQEKAR--- 57 Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 E R+ +LE ++RA VI+ + + G+ V+L + G++ Q+V EA+V Sbjct: 58 --LERRIDQLEEQLSRAVVIEEHART--QADLGSIVTL--QGDGEEITVQLVAPVEAEVI 111 Query: 117 S---GLVSISSPIARALIGKELGDIISVN 142 S +S SP+ +AL+G+++G+ V Sbjct: 112 SEDIPHISNESPLGKALMGRKVGERFEVK 140 >gi|218533326|ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218525629|gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 137 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + R +++ GD G+ V + ++G ++ +V EAD++ G VSI +P Sbjct: 41 LSDELDRVQIVRGGAAQGDFARMGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTP 100 Query: 126 IARALIGKELGDII 139 I ALIG G I Sbjct: 101 IGAALIGLSKGQSI 114 >gi|332995744|gb|AEF05799.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 56 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 K P +T KG+ K++QEL + ERP + ++ A + GD SENA++ Sbjct: 2 KTPLITRKGYLKLKQELDHLWRVERPETTRKVTWAASLGDRSENADFH 49 >gi|330903801|gb|EGH34373.1| transcription elongation factor GreB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 37 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 16/27 (59%), Positives = 21/27 (77%) Query: 124 SPIARALIGKELGDIISVNAPGGEKTY 150 SP+ARAL+ KE+GD + VN P GEK + Sbjct: 2 SPMARALLKKEVGDEVLVNTPEGEKLW 28 >gi|331089361|ref|ZP_08338261.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405424|gb|EGG84959.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium 3_1_46FAA] Length = 101 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD--IISV 141 D I TV + ++ + + Y+IV +GLVSI SP+ +AL+G + GD I V Sbjct: 15 DEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESPLGKALLGHKEGDRVFIKV 74 Query: 142 NAPGG 146 N G Sbjct: 75 NDDFG 79 >gi|124267233|ref|YP_001021237.1| regulator of nucleoside diphosphate kinase [Methylibium petroleiphilum PM1] gi|124260008|gb|ABM95002.1| regulator of nucleoside diphosphate kinase [Methylibium petroleiphilum PM1] Length = 136 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A +E ++ V+ + D + + V L + SG + + +A+ +G VS+ Sbjct: 32 AAIEPLLDACTVVPSRQVRPDVVTMYSQVLLQDLASGLRSRLTLCYPADAEPAAGFVSVL 91 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 SP+ +L+G +G + + P GE ++ E++ +L+ Sbjct: 92 SPVGCSLLGLTVGAVARWSTPSGEARSAEVVALLF 126 >gi|255534407|ref|YP_003094778.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium 3519-10] gi|255340603|gb|ACU06716.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium 3519-10] Length = 127 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 37/75 (49%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + D + V + + ++ Y VG EA + SI S +A A +G ++GD+I Sbjct: 47 LPEDVVTVDRKVRIKDHTQNKEQEYIFVGIAEAKPKRNKHSILSEMALATVGYKVGDVIE 106 Query: 141 VNAPGGEKTYEILQV 155 GGE+ EIL+V Sbjct: 107 WPFEGGERKIEILKV 121 >gi|238758339|ref|ZP_04619517.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC 35236] gi|238703462|gb|EEP96001.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC 35236] Length = 150 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ A Sbjct: 52 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 111 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G + D IS PGG++T +L++L+ Sbjct: 112 LLGMHVNDEISWQLPGGDETRITVLELLY 140 >gi|264679555|ref|YP_003279462.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] gi|299530414|ref|ZP_07043837.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] gi|262210068|gb|ACY34166.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] gi|298721639|gb|EFI62573.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] Length = 135 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR A LE + RA+V+D + + + + +TV +V ++ D + V Sbjct: 30 GRDA-LEAELDRADVLDPAEIPANVVTMNSTVRFTILEIAKTNTLTLVYPKDMDGSADKV 88 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152 SI +P+ AL+G +GD + +P G+ T + Sbjct: 89 SIFAPVGIALLGLSVGDEFKMPSPTGQVTVRV 120 >gi|325168694|ref|YP_004280484.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] gi|325064417|gb|ADY68106.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] Length = 137 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E + ELE RA+V++ D +A G+TVS + + G ++ + AD++ + Sbjct: 37 EKLLIELE----RADVVEDDQFPADAVAVGSTVSYLTEG-GARRTVTLCYPGLADIERSM 91 Query: 120 VSISSPIARALIGKELG 136 VS+ +PI AL+G G Sbjct: 92 VSVLTPIGAALLGLSPG 108 >gi|319780959|ref|YP_004140435.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166847|gb|ADV10385.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 140 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + + RA V ++M + + G+ V+ + + G+ + +V EAD+ +S+ + Sbjct: 40 ELLSEMDRAVVTAAASMPANVVRMGSAVT-IRNDGGNIQRVTLVYPGEADISENRISVLT 98 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ ALIG G + ++ GG + ++V+ Sbjct: 99 PMGTALIGATAGQTVCWSSRGGRELSATIEVV 130 >gi|146299949|ref|YP_001194540.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] gi|146154367|gb|ABQ05221.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] Length = 132 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 47 AEYQAAKEL-----QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 ++YQ +EL + N +L + RA + S + I + V++ + + Sbjct: 10 SDYQFLRELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIEDVKANK 69 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + QIV ADV+ +SI +P++ A+IG + D + P G KT +I+ V Sbjct: 70 QMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKTLKIVAV 123 >gi|37676834|ref|NP_937230.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus YJ016] gi|37201378|dbj|BAC97200.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 135 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQSGLVS 121 + +LEN + RA V+ M + + +TV S +V DQ + VS Sbjct: 31 LEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQVRNPDD--VS 88 Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 I +P+ AL+G +G ++ PGG E+T EIL+V + Sbjct: 89 IFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEVTY 125 >gi|292493343|ref|YP_003528782.1| transcription elongation factor [Nitrosococcus halophilus Nc4] gi|291581938|gb|ADE16395.1| transcription elongation factor [Nitrosococcus halophilus Nc4] Length = 129 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 43/82 (52%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + I A V+ + +S + + + V ++ +G ++ ++V +EA+ +G +S+ +P Sbjct: 26 LAHKIDYAIVVPVGHISSNIVTMHSRVIYLDGKTGIRREVELVYPKEANSDTGKISVLAP 85 Query: 126 IARALIGKELGDIISVNAPGGE 147 I AL+G +G P GE Sbjct: 86 IGSALLGLSVGQATDWVFPSGE 107 >gi|87198849|ref|YP_496106.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|87134530|gb|ABD25272.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 159 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 62 RMAELENI----ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 R+ E+ + I RA+++ + D +A + V ++ +G + +V EAD+ Sbjct: 53 RLPEISRMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQ 112 Query: 118 GLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQVL 156 VSI +P+ LIG G I N G ++ I QV+ Sbjct: 113 DRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVI 152 >gi|237730594|ref|ZP_04561075.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2] gi|226906133|gb|EEH92051.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2] Length = 136 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN AEL+ RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALN----AELD----RAQMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPATMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY 150 T+ Sbjct: 115 TSTH 118 >gi|270602105|ref|ZP_06221570.1| transcription elongation factor GreA [Haemophilus influenzae HK1212] gi|270318242|gb|EFA29436.1| transcription elongation factor GreA [Haemophilus influenzae HK1212] Length = 33 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D +++ PGG ++I++V +I Sbjct: 1 IARGLIGKELDDTVNITTPGGIVEFDIIEVNYI 33 >gi|315178622|gb|ADT85536.1| hypothetical protein/transcription elongation factor GreA [Vibrio furnissii NCTC 11218] Length = 138 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 13/130 (10%) Query: 29 RIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 R I A +A R + S YQ+ L L + + RIA Sbjct: 4 RFIMACGDAIRTWWLTSRFVTYQSPLRLLQLQH------------TCALQKRCRNATRIA 51 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G TV LV+ + +V + SG ++ S + AL+G+ D++ + G Sbjct: 52 LGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLELRILGRS 111 Query: 148 KTYEILQVLW 157 + Y I ++++ Sbjct: 112 RRYAITEIVY 121 >gi|253686674|ref|YP_003015864.1| GreA/GreB family elongation factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753252|gb|ACT11328.1| GreA/GreB family elongation factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 136 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ +++ + + V + N+ ++ +V +S+ +P+ A Sbjct: 38 LDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +G+ I+ P GE+T E+L++L+ Sbjct: 98 LLGMHVGNAITWQLPNGEETRIEVLELLY 126 >gi|209694346|ref|YP_002262274.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238] gi|208008297|emb|CAQ78443.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238] Length = 173 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 D+ L++ S+P+ +A+IGK+LGD ++ G ++ YEI+ V Sbjct: 131 DMTFLLITPSAPLGKAMIGKQLGDEFELDLSGRKQQYEIIGV 172 >gi|28867461|ref|NP_790080.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213970732|ref|ZP_03398857.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato T1] gi|301382620|ref|ZP_07231038.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato Max13] gi|302061760|ref|ZP_07253301.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato K40] gi|302133639|ref|ZP_07259629.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850695|gb|AAO53775.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213924566|gb|EEB58136.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato T1] Length = 135 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + G VS+ +P+ AL+G ++G I APGG+ Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115 >gi|331017912|gb|EGH97968.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 135 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + G VS+ +P+ AL+G ++G I APGG+ Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115 >gi|260771051|ref|ZP_05879979.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972] gi|260613940|gb|EEX39131.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972] Length = 138 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 36/73 (49%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ + Sbjct: 49 RIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLELRIL 108 Query: 145 GGEKTYEILQVLW 157 G + Y I ++++ Sbjct: 109 GRSRRYAITEIVY 121 >gi|126174724|ref|YP_001050873.1| GreA/GreB family elongation factor [Shewanella baltica OS155] gi|153001023|ref|YP_001366704.1| GreA/GreB family elongation factor [Shewanella baltica OS185] gi|160875736|ref|YP_001555052.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|217973017|ref|YP_002357768.1| GreA/GreB family elongation factor [Shewanella baltica OS223] gi|304409101|ref|ZP_07390722.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307303104|ref|ZP_07582859.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|125997929|gb|ABN62004.1| GreA/GreB family elongation factor [Shewanella baltica OS155] gi|151365641|gb|ABS08641.1| GreA/GreB family elongation factor [Shewanella baltica OS185] gi|160861258|gb|ABX49792.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|217498152|gb|ACK46345.1| GreA/GreB family elongation factor [Shewanella baltica OS223] gi|304352922|gb|EFM17319.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306913464|gb|EFN43886.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315267925|gb|ADT94778.1| GreA/GreB family elongation factor [Shewanella baltica OS678] Length = 135 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE + RA+++ S M + + + V +S + ++V ++ + +G +SI Sbjct: 32 AALEAELDRADIVPASQMPANVVTMNSEVKFSVSSSNETFCLRLVYPKDVN-GAGTISIL 90 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G GD I PGG Sbjct: 91 APVGSALLGLSQGDEIEWPGPGG 113 >gi|330878495|gb|EGH12644.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 135 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + G VS+ +P+ AL+G ++G I APGG+ Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115 >gi|299140367|ref|ZP_07033528.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|299140416|ref|ZP_07033572.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597600|gb|EFI53782.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597642|gb|EFI53819.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 70 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G E D+ VS SP+ RAL+ GD + + APGG+++ +L+V + Sbjct: 1 GADEVDLDRNHVSWVSPLGRALMRSAEGDSVVLEAPGGKESLTVLEVRY 49 >gi|270598461|ref|ZP_06221523.1| transcription elongation factor greB [Haemophilus influenzae HK1212] gi|270318308|gb|EFA29477.1| transcription elongation factor greB [Haemophilus influenzae HK1212] Length = 50 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SI SP+ARALIGK L D + V P G T I ++ Sbjct: 7 ISIDSPVARALIGKTLDDEVRVETPSGFITLYINKI 42 >gi|119774570|ref|YP_927310.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119767070|gb|ABL99640.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 136 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 42/91 (46%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N+ LE ++RAEV M + + + V +S ++ ++V ++ + Sbjct: 27 NDAGKVALEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDVSAKGD 86 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT 149 VSI +P+ AL+G GD + PGG T Sbjct: 87 TVSILAPVGSALLGLAQGDEMDWPRPGGGTT 117 >gi|220934850|ref|YP_002513749.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996160|gb|ACL72762.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7] Length = 137 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AELE RA V++ S + + + V + G + +V D +S+ Sbjct: 36 LAELE----RANVVEPSQVPPTLVTMNSRVRFRVEPEGREFQRTLVYPSGMDGDEEKISV 91 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +PI AL+G +GD I+ P GGE I+++L+ Sbjct: 92 LAPIGSALLGLSVGDSIAWPTPKGGEMNVRIMEILY 127 >gi|307543993|ref|YP_003896472.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM 2581] gi|307216017|emb|CBV41287.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM 2581] Length = 136 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + R EV++ + D I+ + V + + +V D VS+ +P Sbjct: 33 LEEELERGEVLEPEQIPADVISMNSRVRFTDLTREREIVKTLVYPHALDATEDGVSVMAP 92 Query: 126 IARALIGKELGDII-SVNAPGGEKT-YEILQVLW 157 + AL+G +GD+I PGG++T + +LW Sbjct: 93 VGAALLGLHVGDVIEEWPLPGGKQTSLRVDAILW 126 >gi|89068497|ref|ZP_01155894.1| putative nucleoside diphosphate kinase regulator [Oceanicola granulosus HTCC2516] gi|89045916|gb|EAR51976.1| putative nucleoside diphosphate kinase regulator [Oceanicola granulosus HTCC2516] Length = 150 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 9/111 (8%) Query: 55 LQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 L++L EG + ++ + RA ++ + + + +A G V+ ++ +G K+ Sbjct: 31 LESLAEGALQRNPDLADRLLGELGRARIVPPARLPANVVAIGRAVTYRDETTGLAKSVVP 90 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 V ++AD+ G +S+ +PI ALIG G I G + +L VL + Sbjct: 91 VFPEDADIARGRISVLTPIGVALIGLAEGAAIPWETRDGSR--RVLSVLSV 139 >gi|157146775|ref|YP_001454094.1| nucleoside diphosphate kinase regulator [Citrobacter koseri ATCC BAA-895] gi|157083980|gb|ABV13658.1| hypothetical protein CKO_02549 [Citrobacter koseri ATCC BAA-895] Length = 136 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA++ M D + + V + G+ + +V + +S+ +P+ A Sbjct: 38 LDRAQMCSPEAMPHDVVTMNSRVKFRNLSDGEIRVRTLVYPANMTDSNTQLSVMAPVGAA 97 Query: 130 LIGKELGDIISVNAPGGEKTY-EILQV 155 L+G +GD I + PGG T+ E+L++ Sbjct: 98 LLGLRVGDTIHWDLPGGASTHLEVLEL 124 >gi|154246864|ref|YP_001417822.1| nucleoside diphosphate kinase regulator [Xanthobacter autotrophicus Py2] gi|154160949|gb|ABS68165.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2] Length = 143 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 R Q PR+ + + L+ A A + ++ E +AEL+ RA ++ I + Sbjct: 7 RSQSRSPRLPALVLSHPDHERLAGLAT-AALDRIPDVAEELLAELD----RARLVPIGRV 61 Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + G+ V+ + G+ + +V ++AD+ + VS+ +PI ALIG G I Sbjct: 62 PATAVQMGSKVTY--EAGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICW 119 Query: 142 NAPGGEK 148 A G + Sbjct: 120 TARDGRR 126 >gi|212711074|ref|ZP_03319202.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM 30120] gi|212686242|gb|EEB45770.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM 30120] Length = 136 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 +P II +A L E A Y + LN+ EL+ RA+++ + D + Sbjct: 3 KPTIIINDLDAERLDALMEQAAYAGTPVAEALND----ELD----RADIVSPQEIPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 55 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114 Query: 147 EKT-YEILQVLW 157 +T +L++++ Sbjct: 115 VETRVRVLEIVY 126 >gi|87119377|ref|ZP_01075275.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121] gi|86165768|gb|EAQ67035.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121] Length = 160 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 7/78 (8%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG---LVSISSPIARALIGKELGD 137 D IA GA V L E+++G + I G Q D + L++ SSP+ RAL+G L D Sbjct: 83 DAIAMGALVEL-EESAGKQITCFISPCAGGQAFDFEGKNCLLITPSSPLGRALLGANLED 141 Query: 138 IISVNAPGGEKTYEILQV 155 + V K YEI + Sbjct: 142 EVKVTIGADTKFYEITHL 159 >gi|320177450|gb|EFW52449.1| Regulator of nucleoside diphosphate kinase [Shigella dysenteriae CDC 74-1112] Length = 136 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E+ Y +LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEHPAYAGLPIADSLN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|50119243|ref|YP_048410.1| nucleoside diphosphate kinase regulator [Pectobacterium atrosepticum SCRI1043] gi|49609769|emb|CAG73203.1| putative regulator of nucleoside diphosphate kinase [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RAE++ +++ + + V + N+ ++ +V +S+ +P Sbjct: 34 LNDELDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G +G I+ P GE+T E+L++L+ Sbjct: 94 LGAALLGMHVGSAITWQLPNGEETRIEVLELLY 126 >gi|330962357|gb|EGH62617.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 135 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ + RAE V+ + + + V E+ SG + +V Q+A V+ G VS+ + Sbjct: 34 LQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLTLVYPQDAGVE-GTVSVLA 92 Query: 125 PIARALIGKELGDIISVNAPGGE 147 P+ AL+G ++G I APGG+ Sbjct: 93 PMGSALLGLQVGQHIDWPAPGGK 115 >gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis DSM 43017] gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM 43017] Length = 154 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P T ++ ++LR ++ E PR+ + GD ++ A+ E+ + + R+ E Sbjct: 9 PATRSRLERELEQLRKQRAELLPRLGED-----PLGDSADQADLVERSEVVSRLDRRINE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQ-SGLVSIS 123 + +++ IST S + G V+L + G ++ +VG EAD + ++ Sbjct: 64 VVDLLHGQ----ISTESEGGLPSGTKVTL-RFDDGSVEDMVVVGVAAEADEDDTSTLTAD 118 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +AL G + GD ++ P GE T EI+++ Sbjct: 119 SPLGQALAGHQEGDTVTYRTPKGEVTAEIVKL 150 >gi|152995644|ref|YP_001340479.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] gi|150836568|gb|ABR70544.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] Length = 137 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ I RAE+++ M + + +TV+ +S + + +V ++A+ VS+ + Sbjct: 34 DLQEEINRAEIVEPRDMPDNIVTMNSTVTFKVLSSEKEFSKTLVYPKDANGAEDTVSVLA 93 Query: 125 PIARALIGKELGDIISVNAPGGE 147 P+ AL+G + GD I P G+ Sbjct: 94 PVGSALLGLKEGDQIDWPKPNGD 116 >gi|254562534|ref|YP_003069629.1| elongation factor, GreA/GreB family [Methylobacterium extorquens DM4] gi|254269812|emb|CAX25787.1| Putative elongation factor, GreA/GreB family [Methylobacterium extorquens DM4] Length = 107 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + R +++ D G+ V + ++G ++ +V EAD++ G VSI Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKVSIL 68 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 +PI ALIG G I+ GE + +L+V Sbjct: 69 TPIGAALIGLSEGQSINWATRTGETRRLTVLEV 101 >gi|238793739|ref|ZP_04637361.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia ATCC 29909] gi|238726980|gb|EEQ18512.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia ATCC 29909] Length = 152 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 40/80 (50%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ A Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113 Query: 130 LIGKELGDIISVNAPGGEKT 149 L+G + D IS PGG++T Sbjct: 114 LLGMHINDEISWKLPGGDET 133 >gi|197103524|ref|YP_002128901.1| transcription elongation factor [Phenylobacterium zucineum HLK1] gi|196476944|gb|ACG76472.1| transcription elongation factor [Phenylobacterium zucineum HLK1] Length = 143 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A L N ++RA ++ D + G+ V + + + ++V +EA L + Sbjct: 37 LALLWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRLVLPREAR-PPALEPV 95 Query: 123 SSPIARALIGKELGDIISVNAPGGE 147 S I AL+G GD+ AP GE Sbjct: 96 SGTIGAALLGLRPGDVFHWRAPSGE 120 >gi|148555405|ref|YP_001262987.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148500595|gb|ABQ68849.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 166 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 10/129 (7%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP I SEA +++ AE + + ++E + E++ RA + + + D + Sbjct: 38 RPAIHMIDSEAETLANMAVAAE----ERIPQVSELLLEEID----RATLYKAARIPADVV 89 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V V++ +G + Q+V ++AD+ +G VSI + + LIG G S+ PG Sbjct: 90 TMHSHVEFVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQ--SILWPGR 147 Query: 147 EKTYEILQV 155 + +L + Sbjct: 148 DGHRRLLTI 156 >gi|330884640|gb|EGH18789.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 37 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 24/34 (70%) Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ KE GD + VN P GEK + + +++ Sbjct: 2 SPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 35 >gi|146294926|ref|YP_001185350.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|145566616|gb|ABP77551.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 66 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 +T +G+ + +EL++ +E RP+I + EA A GD SENA+ Sbjct: 6 ITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENAD 47 >gi|152982035|ref|YP_001353580.1| GreA family transcription elongation factor [Janthinobacterium sp. Marseille] gi|151282112|gb|ABR90522.1| transcription elongation factor, greA family [Janthinobacterium sp. Marseille] Length = 139 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 10/103 (9%) Query: 62 RMAELE--------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 RM E+E +II+ + ++ + + +TVS ++ + + IV Q+A Sbjct: 24 RMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYSPVDTEEVRKLTIVCPQDA 83 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + Q L+S +PI ALIG++ + V P K E L++L Sbjct: 84 NPQLALISALTPIGLALIGRKALTTVEVALPS--KRVEKLKIL 124 >gi|325120614|emb|CBZ56168.1| hypothetical protein NCLIV_065940 [Neospora caninum Liverpool] Length = 2735 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISSPIAR 128 R+E + S+ SGD F A SLV++ G +N ++ + D V S L+S+SSP+ R Sbjct: 194 RSESGNASSGSGDTSPFAAFCSLVKEALGAGQNAEVAAELLYDTVASHLLSVSSPLTR 251 >gi|260770384|ref|ZP_05879317.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP 102972] gi|260615722|gb|EEX40908.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP 102972] gi|315181451|gb|ADT88364.1| nucleoside diphosphate kinase regulator [Vibrio furnissii NCTC 11218] Length = 135 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE+ + RA + + M + ++ +TV + +V E S +SI Sbjct: 31 LEKLEDELDRATINEPQDMPDNVVSMNSTVRFKFTGKDEIIQKNLVYPHEVK-NSDDISI 89 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 +P+ AL+G G ++ PGG EKT EI++V++ Sbjct: 90 FAPVGSALLGLAAGQTLTWPMPGGAEKTIEIIEVVY 125 >gi|300023786|ref|YP_003756397.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525607|gb|ADJ24076.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] Length = 164 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 +PRI+ + ++ + DL+ A + + Q ELE + RAEV+ +++ + + Sbjct: 10 KPRIVVSDTDFKRLTDLALGATDRFPEVAQ--------ELEIEMGRAEVVQAASVPANVV 61 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA-PG 145 + V +S ++ ++V EAD+ +S+ +PI ALIG G I+ A G Sbjct: 62 RMDSIVEF-RTDSAQQRRVKLVFPGEADISQDKISVLTPIGVALIGLAAGQSITWTARDG 120 Query: 146 GEKTYEILQV 155 + T ++ V Sbjct: 121 KQHTLTVIAV 130 >gi|193063403|ref|ZP_03044493.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22] gi|260842837|ref|YP_003220615.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O103:H2 str. 12009] gi|192930987|gb|EDV83591.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22] gi|257757984|dbj|BAI29481.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O103:H2 str. 12009] Length = 136 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y + LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLRIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|227114046|ref|ZP_03827702.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 136 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+++ +++ + + V + N+ ++ +V +S+ +P+ A Sbjct: 38 LDRADILPAASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +G+ I+ P GE+T E+L++L+ Sbjct: 98 LLGMHVGNSITWQLPNGEETRIEVLELLY 126 >gi|300776138|ref|ZP_07085997.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC 35910] gi|300505271|gb|EFK36410.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC 35910] Length = 126 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 37/75 (49%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + D + V+L + + Y V + ++ SI S IA A++G ++GD+IS Sbjct: 47 LPADIVTVDRKVTLKDHTLNFEHEYIFVPSVKEKLKKNKYSILSDIALAVVGYKVGDVIS 106 Query: 141 VNAPGGEKTYEILQV 155 GE+ EIL+V Sbjct: 107 WPFRDGERKIEILKV 121 >gi|241764171|ref|ZP_04762206.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] gi|241366508|gb|EER61008.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] Length = 303 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE+ I RA V+D ++ D + + +L++ + + + +V +EAD ++G +S+ S Sbjct: 203 ELEHEIERAIVVDPRQVAEDVVTMNSK-ALLQVDDAELE-VALVYPEEADDRAGKLSVCS 260 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I A++G + GD S P I +VL+ Sbjct: 261 DIGTAILGYKEGDAFSWRIPNRTCHIRIAKVLY 293 >gi|88813317|ref|ZP_01128556.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231] gi|88789489|gb|EAR20617.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231] Length = 137 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 41/83 (49%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L+ + RAEV+ + + + V +NSG++ +V ++ + +S+ Sbjct: 33 AALQAELDRAEVVPPEQVPPSVVTMNSAVRFSIENSGEEFCLTLVYPKDVGGNADRISVL 92 Query: 124 SPIARALIGKELGDIISVNAPGG 146 +P+ AL+G +GD + PGG Sbjct: 93 APVGSALLGLSVGDELEWPRPGG 115 >gi|300088754|ref|YP_003759276.1| transcription elongation factor GreA/GreB domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528487|gb|ADJ26955.1| transcription elongation factor GreA/GreB domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1597 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 TV V+ + + ++ ++++ + G ++I++PIARALIG LG + P G Sbjct: 1528 TVVYVDIENPQVEKQALITCEKSNPEWGAININTPIARALIGATLGSTVEAKLPKG 1583 >gi|56459737|ref|YP_155018.1| GreA/GreB family transcription elongation factor [Idiomarina loihiensis L2TR] gi|56178747|gb|AAV81469.1| Transcription elongation factor greA/greB family [Idiomarina loihiensis L2TR] Length = 151 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 RI GA+ L + ++ ++V + AD + LVS SP+ L+G +GDI +V Sbjct: 71 RIRVGASAVLRNVKTMEQVKVRLVPPELADTDNYLVSFISPLGSTLLGLRVGDIATVIVK 130 Query: 145 GGEKTYEILQV 155 +E+L V Sbjct: 131 DISIKWEVLTV 141 >gi|332527739|ref|ZP_08403780.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus JA2] gi|332112137|gb|EGJ12113.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus JA2] Length = 139 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ AEV+D T+ D + + V L DQ ++ VS+ SP+ Sbjct: 41 DMLDLAEVVDPKTLPADVVTMRSRVVLSRGGELLDLTLCYPDDQPDGIER--VSVFSPLG 98 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 AL+G +GD I P GE+ ++ L Sbjct: 99 MALLGARVGDSIGWRGPAGEEHTARIEAL 127 >gi|297518602|ref|ZP_06936988.1| nucleoside diphosphate kinase regulator [Escherichia coli OP50] Length = 136 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVHPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|238799365|ref|ZP_04642803.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii ATCC 43969] gi|238716795|gb|EEQ08673.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii ATCC 43969] Length = 152 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + N+ ++ +V + +S+ +P+ A Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G + D IS PGG++T +L++L+ Sbjct: 114 LLGLHVNDEISWKLPGGDETRITVLELLY 142 >gi|238754630|ref|ZP_04615983.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC 29473] gi|238707089|gb|EEP99453.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC 29473] Length = 136 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+++ S + D + + V + NS ++ +V S +S+ +P+ A Sbjct: 38 LDRADILPPSEIPADVVTMNSRVRFRDLNSEEEHIRTLVYPASLKDSSEQISVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157 L+G + D I+ PGG E +L++L+ Sbjct: 98 LLGLHVNDEINWTLPGGDEARITVLELLY 126 >gi|88797807|ref|ZP_01113395.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297] gi|88779484|gb|EAR10671.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297] Length = 142 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ + RA V + + D + G+ V +SG ++V ++ +S+ SP Sbjct: 34 LESELDRATVCLPNELPADAVQLGSVVRFQLSSSGQVYLRELVLPEQRQ-HDEHISVLSP 92 Query: 126 IARALIGKELGDIIS-VNAPGGEKTYEILQV 155 + AL+G +GD I+ ++PG T IL V Sbjct: 93 VGMALLGLRVGDEIAWPSSPGQSTTVRILDV 123 >gi|315127979|ref|YP_004069982.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] gi|315016493|gb|ADT69831.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] Length = 47 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 +T +G+ ++QQE E+RP + K +S A + GD SENA+ Sbjct: 6 ITREGYLQLQQEHDHLWNEKRPEVTKIVSWAASLGDRSENAD 47 >gi|291326552|ref|ZP_06124973.2| regulator of nucleoside diphosphate kinase [Providencia rettgeri DSM 1131] gi|291313526|gb|EFE53979.1| regulator of nucleoside diphosphate kinase [Providencia rettgeri DSM 1131] Length = 143 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 +P II +A L E Y + LN+ EL+ RA+++ + D + Sbjct: 10 KPTIIINDLDAERLDALMEQPAYAGTPVAEALND----ELD----RADILSPQEIPADVV 61 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 62 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWELPNG 121 Query: 147 EKT-YEILQVLW 157 +T +L++++ Sbjct: 122 VQTRVRVLEIVY 133 >gi|183597965|ref|ZP_02959458.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827] gi|188022738|gb|EDU60778.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827] Length = 136 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 +P II +A L E A Y LN+ EL+ RA+++ + D + Sbjct: 3 KPTIIINDLDAERLDALLEQAAYAGTPVADALND----ELD----RADILSPQEIPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 55 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114 Query: 147 EKT-YEILQVLW 157 +T +L++++ Sbjct: 115 VETRVRVLEIIY 126 >gi|110835187|ref|YP_694046.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis SK2] gi|110648298|emb|CAL17774.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis SK2] Length = 133 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 +G +A+ LE + RA V++ M D + + + E+ G + +V + Q Sbjct: 24 DGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPHDTGPQR- 82 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 VSI +P+ AL+G +G I AP G+ EIL V Sbjct: 83 -VSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAV 119 >gi|109896618|ref|YP_659873.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica T6c] gi|109698899|gb|ABG38819.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica T6c] Length = 128 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 E++P II IS A DL+E EYQ E L + + +EN + RA ++ + + Sbjct: 2 EKQPDII--ISTA----DLAE-LEYQL--ERSKLPDDAIRAIENELDRATIVACKDLPEN 52 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 +A G+ V+ +S + ++ +S+ +PI ALIG G I Sbjct: 53 VVAIGSQVTFKILDSQKVFTKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQ 112 Query: 145 GGEKTYEILQV 155 G+++ EI++V Sbjct: 113 RGQQSVEIIKV 123 >gi|240140105|ref|YP_002964582.1| putative transcription elongation factor (GreA/GreB domain protein) [Methylobacterium extorquens AM1] gi|240010079|gb|ACS41305.1| Putative transcription elongation factor (GreA/GreB domain protein) [Methylobacterium extorquens AM1] Length = 107 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKISIL 68 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 +PI ALIG G I GE + +L+V Sbjct: 69 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEV 101 >gi|157375539|ref|YP_001474139.1| hypothetical protein Ssed_2402 [Shewanella sediminis HAW-EB3] gi|157317913|gb|ABV37011.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 168 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 26/42 (61%) Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 DV+ +++ SSP+ AL+G+ L D + +N K YEI+ V Sbjct: 126 DVEVMVITPSSPLGNALMGRMLDDTVVINIGDNRKEYEIIAV 167 >gi|260773794|ref|ZP_05882709.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii CIP 69.14] gi|260610755|gb|EEX35959.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii CIP 69.14] Length = 136 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LEN + RA V++ + D + +TV + S D +V + +SI Sbjct: 32 LERLENELDRATVLNPEEIPADVVTMNSTVKFKFQGSDDVMQKTLVYPHDVKGNDD-ISI 90 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +P+ AL+G G ++ P G E+T EI+ ++ Sbjct: 91 FAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDII 125 >gi|227326625|ref|ZP_03830649.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 136 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+++ +++ + + V + N+ ++ +V +S+ +P+ A Sbjct: 38 LDRADILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +G+ I+ P GE+T E+L++L+ Sbjct: 98 LLGMHVGNSITWQLPNGEETRIEVLELLY 126 >gi|261819630|ref|YP_003257736.1| nucleoside diphosphate kinase regulator [Pectobacterium wasabiae WPP163] gi|261603643|gb|ACX86129.1| GreA/GreB family elongation factor [Pectobacterium wasabiae WPP163] Length = 136 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ +++ + + V + N+ ++ +V +S+ +P+ A Sbjct: 38 LDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G +G+ I+ P GE+ E+L++L+ Sbjct: 98 LLGMHVGNAITWQLPNGEEARIEVLELLY 126 >gi|163852771|ref|YP_001640814.1| transcription elongation factor GreA/GreB domain-containing protein [Methylobacterium extorquens PA1] gi|163664376|gb|ABY31743.1| transcription elongation factor GreA/GreB domain protein [Methylobacterium extorquens PA1] Length = 123 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI +P Sbjct: 27 LSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGRISILTP 86 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155 I ALIG G I GE + +L+V Sbjct: 87 IGAALIGLSEGQSIDWATRTGETRRLTVLEV 117 >gi|237797836|ref|ZP_04586297.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020686|gb|EGI00743.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 132 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ + RAE V+ + + + V E+ SG + ++V Q+A + G VS+ + Sbjct: 34 LQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLA 92 Query: 125 PIARALIGKELGDIISVNAPGGE 147 P+ AL+G ++G I APGG+ Sbjct: 93 PMGSALLGLQVGQHIDWPAPGGK 115 >gi|39995942|ref|NP_951893.1| nucleoside diphosphate kinase regulator protein [Geobacter sulfurreducens PCA] gi|39982706|gb|AAR34166.1| nucleoside diphosphate kinase regulator protein, putative [Geobacter sulfurreducens PCA] gi|298504957|gb|ADI83680.1| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400] Length = 135 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 46/95 (48%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE+ + A ++D + + + + V L + + + +V +A++ G +SI Sbjct: 31 LQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPNDANIAEGKISI 90 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI A++G GD + + K I +VL+ Sbjct: 91 LSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLY 125 >gi|123443968|ref|YP_001007938.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090929|emb|CAL13811.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 136 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ A Sbjct: 38 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157 L+G + D IS PGG E +L++L+ Sbjct: 98 LLGLHVNDEISWKLPGGDEARITVLELLY 126 >gi|84386369|ref|ZP_00989397.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378793|gb|EAP95648.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 56 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 +T +G++K++ E E+RP I K ++ A + GD SENA+ Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENAD 47 >gi|262198442|ref|YP_003269651.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365] gi|262081789|gb|ACY17758.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365] Length = 163 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +V+ +SPI RAL+G+ LG+I+ V G K + I V Sbjct: 126 VVTPASPIGRALLGRRLGEIVDVTVRGEPKEWTITYV 162 >gi|326795231|ref|YP_004313051.1| transcription elongation factor GreA/GreB domain-containing protein [Marinomonas mediterranea MMB-1] gi|326545995|gb|ADZ91215.1| transcription elongation factor GreA/GreB domain-containing protein [Marinomonas mediterranea MMB-1] Length = 161 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%) Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 LV + G+K V Q AD+Q LVS+ SPI ++L+GK GD +V G E EI Sbjct: 105 LVPRCGGNK-----VSVQAADIQ--LVSLDSPIGKSLMGKSEGDEFTVLRAGVEVYAEIS 157 Query: 154 QVLW 157 + + Sbjct: 158 DIHY 161 >gi|323967558|gb|EGB62974.1| hypothetical protein ERJG_01136 [Escherichia coli M863] gi|327254294|gb|EGE65916.1| regulator of nucleoside diphosphate kinase [Escherichia coli STEC_7v] Length = 136 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYSGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|238789786|ref|ZP_04633568.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii ATCC 33641] gi|238722145|gb|EEQ13803.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii ATCC 33641] Length = 152 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ A Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157 L+G + D IS PGG E +L++L+ Sbjct: 114 LLGLHVNDEISWKLPGGDEARITVLELLY 142 >gi|167624223|ref|YP_001674517.1| GreA/GreB family elongation factor [Shewanella halifaxensis HAW-EB4] gi|167354245|gb|ABZ76858.1| GreA/GreB family elongation factor [Shewanella halifaxensis HAW-EB4] Length = 165 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118 + + + TR + +S ++ G V L++ + K Y VG ++ Sbjct: 71 DFDALFTR--LSGVSETRAPKVGLGKLVELMDADG--KSQYLFVGPGAGGLKVTCDEYSV 126 Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +V+++SP+ RA++ K GD S+ G + YEI+ V Sbjct: 127 MIVTLASPLGRAMMSKLQGDEFSLQVAGSRRDYEIVMV 164 >gi|330447801|ref|ZP_08311449.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491992|dbj|GAA05946.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 160 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 D IQ++L Q ++A + A +++EN A E L G+ +E Sbjct: 7 LDDIQEKLTLTLQAATEAAMRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEEC-- 64 Query: 72 RAEVIDISTM------SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL------ 119 +A+++ + S D + G V+LV++ D +G V L Sbjct: 65 KADLMAYQKLQASLPQSFDSVLLGHIVTLVDEE--DNTRLVFLGPTAGGVVLTLEGKPVT 122 Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 V+ +SP ALIG+E+G+ + V+ YE+L + Sbjct: 123 IVTPTSPFGDALIGREIGEEVDVHIGNSVTWYEVLAI 159 >gi|157777579|gb|ABV69908.1| TRIM22 [Gorilla gorilla] Length = 498 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 16/94 (17%) Query: 13 DKIQQE-LRWRQ--QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 D I+QE W+ Q+ER +I+K +E R D E +ELQ L EG + L+N+ Sbjct: 163 DDIRQERTAWKNYIQKERQKILKGFNEMRVILDNEEQ------RELQKLEEGEVNVLDNL 216 Query: 70 ITRAEVI-----DISTMSGD--RIAFGATVSLVE 96 + + D ST+ D R G++V +++ Sbjct: 217 AAATDQLVQQRQDASTLISDLQRRLRGSSVEMLQ 250 >gi|229523094|ref|ZP_04412506.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM 11079-80] gi|229339944|gb|EEO04954.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM 11079-80] Length = 135 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130 RA V++ + M + + +TV K SG + + DV+S VSI +P+ AL Sbjct: 40 RATVLEPAEMPDNVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|157157899|ref|YP_001461775.1| nucleoside diphosphate kinase regulator [Escherichia coli E24377A] gi|157079929|gb|ABV19637.1| regulator of nucleoside diphosphate kinase [Escherichia coli E24377A] Length = 136 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|66043448|ref|YP_233289.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. syringae B728a] gi|63254155|gb|AAY35251.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. syringae B728a] gi|330970496|gb|EGH70562.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aceris str. M302273PT] gi|330983174|gb|EGH81277.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 135 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|116618081|ref|YP_818452.1| nucleotidyltransferase/DNA polymerase for DNA repair [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096928|gb|ABJ62079.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 440 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 D +F A+V VE+N K +V ++ + GLV SSP+A+ ++G Sbjct: 23 DSKSFYASVECVERNYNPLKALLVVMSEQENTNGGLVLASSPMAKKILG 71 >gi|194432543|ref|ZP_03064829.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 1012] gi|194419104|gb|EDX35187.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 1012] gi|332096848|gb|EGJ01838.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 155-74] Length = 136 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|331676268|ref|ZP_08376980.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591] gi|331076326|gb|EGI47608.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591] Length = 136 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|283784385|ref|YP_003364250.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium ICC168] gi|282947839|emb|CBG87399.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium ICC168] Length = 136 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA + TM D + Sbjct: 3 RPPIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RARMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAPVGAALLGLRVGDTIHWQLPGG 114 Query: 147 EKTY-EILQV 155 + E+L++ Sbjct: 115 VSAHLEVLEL 124 >gi|15800325|ref|NP_286337.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 EDL933] gi|15829903|ref|NP_308676.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. Sakai] gi|16128593|ref|NP_415143.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. MG1655] gi|24111957|ref|NP_706467.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str. 301] gi|26246590|ref|NP_752629.1| nucleoside diphosphate kinase regulator [Escherichia coli CFT073] gi|30062068|ref|NP_836239.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str. 2457T] gi|74311145|ref|YP_309564.1| nucleoside diphosphate kinase regulator [Shigella sonnei Ss046] gi|82543058|ref|YP_407005.1| nucleoside diphosphate kinase regulator [Shigella boydii Sb227] gi|89107477|ref|AP_001257.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. W3110] gi|91209657|ref|YP_539643.1| nucleoside diphosphate kinase regulator [Escherichia coli UTI89] gi|110640840|ref|YP_668568.1| nucleoside diphosphate kinase regulator [Escherichia coli 536] gi|110804605|ref|YP_688125.1| nucleoside diphosphate kinase regulator [Shigella flexneri 5 str. 8401] gi|117622830|ref|YP_851743.1| nucleoside diphosphate kinase regulator [Escherichia coli APEC O1] gi|157160106|ref|YP_001457424.1| nucleoside diphosphate kinase regulator [Escherichia coli HS] gi|168747719|ref|ZP_02772741.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4113] gi|168754712|ref|ZP_02779719.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4401] gi|168760240|ref|ZP_02785247.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4501] gi|168770214|ref|ZP_02795221.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4486] gi|168774674|ref|ZP_02799681.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4196] gi|168779101|ref|ZP_02804108.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4076] gi|168786458|ref|ZP_02811465.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC869] gi|168798171|ref|ZP_02823178.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC508] gi|170021031|ref|YP_001725985.1| nucleoside diphosphate kinase regulator [Escherichia coli ATCC 8739] gi|170080191|ref|YP_001729511.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170080292|ref|YP_001729612.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170681529|ref|YP_001742727.1| nucleoside diphosphate kinase regulator [Escherichia coli SMS-3-5] gi|187731796|ref|YP_001879282.1| nucleoside diphosphate kinase regulator [Shigella boydii CDC 3083-94] gi|188493179|ref|ZP_03000449.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638] gi|191167359|ref|ZP_03029175.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A] gi|191172347|ref|ZP_03033889.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11] gi|193069033|ref|ZP_03049991.1| regulator of nucleoside diphosphate kinase [Escherichia coli E110019] gi|194427996|ref|ZP_03060541.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171] gi|194437440|ref|ZP_03069537.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1] gi|195936160|ref|ZP_03081542.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. EC4024] gi|208809474|ref|ZP_03251811.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4206] gi|208816344|ref|ZP_03257523.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4045] gi|208822949|ref|ZP_03263267.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4042] gi|209397427|ref|YP_002269245.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4115] gi|209917869|ref|YP_002291953.1| nucleoside diphosphate kinase regulator [Escherichia coli SE11] gi|215485652|ref|YP_002328083.1| nucleoside diphosphate kinase regulator [Escherichia coli O127:H6 str. E2348/69] gi|217325093|ref|ZP_03441177.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14588] gi|218553153|ref|YP_002386066.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI1] gi|218557550|ref|YP_002390463.1| nucleoside diphosphate kinase regulator [Escherichia coli S88] gi|218688434|ref|YP_002396646.1| nucleoside diphosphate kinase regulator [Escherichia coli ED1a] gi|218694051|ref|YP_002401718.1| nucleoside diphosphate kinase regulator [Escherichia coli 55989] gi|218698983|ref|YP_002406612.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI39] gi|218703944|ref|YP_002411463.1| nucleoside diphosphate kinase regulator [Escherichia coli UMN026] gi|227884410|ref|ZP_04002215.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972] gi|237707417|ref|ZP_04537898.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA] gi|238899889|ref|YP_002925685.1| regulator of nucleoside diphosphate kinase [Escherichia coli BW2952] gi|253774405|ref|YP_003037236.1| nucleoside diphosphate kinase regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160691|ref|YP_003043799.1| nucleoside diphosphate kinase regulator [Escherichia coli B str. REL606] gi|254791777|ref|YP_003076614.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. TW14359] gi|256020563|ref|ZP_05434428.1| nucleoside diphosphate kinase regulator [Shigella sp. D9] gi|256023775|ref|ZP_05437640.1| nucleoside diphosphate kinase regulator [Escherichia sp. 4_1_40B] gi|260853863|ref|YP_003227754.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O26:H11 str. 11368] gi|260866759|ref|YP_003233161.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O111:H- str. 11128] gi|261224078|ref|ZP_05938359.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. FRIK2000] gi|261257772|ref|ZP_05950305.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O157:H7 str. FRIK966] gi|291281563|ref|YP_003498381.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7 str. CB9615] gi|293403873|ref|ZP_06647867.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412] gi|293408736|ref|ZP_06652575.1| kinase regulator [Escherichia coli B354] gi|293413907|ref|ZP_06656556.1| kinase regulator protein [Escherichia coli B185] gi|293418722|ref|ZP_06661157.1| hypothetical protein ECCG_03607 [Escherichia coli B088] gi|298379649|ref|ZP_06989254.1| nucleoside diphosphate kinase regulator protein [Escherichia coli FVEC1302] gi|300817873|ref|ZP_07098087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 107-1] gi|300823077|ref|ZP_07103211.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 119-7] gi|300901112|ref|ZP_07119222.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 198-1] gi|300907782|ref|ZP_07125400.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 84-1] gi|300920583|ref|ZP_07137004.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 115-1] gi|300927295|ref|ZP_07143022.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 182-1] gi|300931538|ref|ZP_07146854.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 187-1] gi|300939638|ref|ZP_07154290.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 21-1] gi|300951104|ref|ZP_07164971.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 116-1] gi|300959172|ref|ZP_07171254.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 175-1] gi|300990100|ref|ZP_07179112.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 45-1] gi|300996806|ref|ZP_07181547.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 200-1] gi|301025288|ref|ZP_07188852.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 69-1] gi|301028918|ref|ZP_07192087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 196-1] gi|301302086|ref|ZP_07208219.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 124-1] gi|301329123|ref|ZP_07222126.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 78-1] gi|301643983|ref|ZP_07244006.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 146-1] gi|306812957|ref|ZP_07447150.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101] gi|307137228|ref|ZP_07496584.1| nucleoside diphosphate kinase regulator [Escherichia coli H736] gi|307312673|ref|ZP_07592305.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309795524|ref|ZP_07689941.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 145-7] gi|312965055|ref|ZP_07779292.1| regulator of nucleoside diphosphate kinase [Escherichia coli 2362-75] gi|312970688|ref|ZP_07784869.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1827-70] gi|331641111|ref|ZP_08342246.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736] gi|331645767|ref|ZP_08346870.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605] gi|331651619|ref|ZP_08352638.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718] gi|331656637|ref|ZP_08357599.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206] gi|331661974|ref|ZP_08362897.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143] gi|331666962|ref|ZP_08367836.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271] gi|331672151|ref|ZP_08372943.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280] gi|331682030|ref|ZP_08382654.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299] gi|332281747|ref|ZP_08394160.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9] gi|84028114|sp|P0AFW6|RNK_ECO57 RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028115|sp|P0AFW5|RNK_ECOL6 RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028116|sp|P0AFW4|RNK_ECOLI RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028117|sp|P0AFW7|RNK_SHIFL RecName: Full=Regulator of nucleoside diphosphate kinase gi|210060903|pdb|3BMB|A Chain A, Crystal Structure Of A New Rna Polymerase Interacting Protein gi|210060904|pdb|3BMB|B Chain B, Crystal Structure Of A New Rna Polymerase Interacting Protein gi|12513506|gb|AAG54945.1|AE005240_11 regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EDL933] gi|26106989|gb|AAN79173.1|AE016757_77 Regulator of nucleoside diphosphate kinase [Escherichia coli CFT073] gi|598118|gb|AAC36933.1| rnk [Escherichia coli] gi|1651248|dbj|BAA35239.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K12 substr. W3110] gi|1778527|gb|AAB40810.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|1786827|gb|AAC73711.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. MG1655] gi|13360107|dbj|BAB34072.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. Sakai] gi|24050767|gb|AAN42174.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 301] gi|30040312|gb|AAP16045.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 2457T] gi|73854622|gb|AAZ87329.1| regulator of nucleoside diphosphate kinase [Shigella sonnei Ss046] gi|81244469|gb|ABB65177.1| regulator of nucleoside diphosphate kinase [Shigella boydii Sb227] gi|91071231|gb|ABE06112.1| regulator of nucleoside diphosphate kinase [Escherichia coli UTI89] gi|110342432|gb|ABG68669.1| regulator of nucleoside diphosphate kinase [Escherichia coli 536] gi|110614153|gb|ABF02820.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 5 str. 8401] gi|115511954|gb|ABJ00029.1| regulator of nucleoside diphosphate kinase [Escherichia coli APEC O1] gi|157065786|gb|ABV05041.1| regulator of nucleoside diphosphate kinase [Escherichia coli HS] gi|169755959|gb|ACA78658.1| GreA/GreB family elongation factor [Escherichia coli ATCC 8739] gi|169888026|gb|ACB01733.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|169888127|gb|ACB01834.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170519247|gb|ACB17425.1| regulator of nucleoside diphosphate kinase [Escherichia coli SMS-3-5] gi|187428788|gb|ACD08062.1| regulator of nucleoside diphosphate kinase [Shigella boydii CDC 3083-94] gi|187769767|gb|EDU33611.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4196] gi|188017705|gb|EDU55827.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4113] gi|188488378|gb|EDU63481.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638] gi|189002814|gb|EDU71800.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4076] gi|189357941|gb|EDU76360.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4401] gi|189360881|gb|EDU79300.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4486] gi|189369200|gb|EDU87616.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4501] gi|189373770|gb|EDU92186.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC869] gi|189379372|gb|EDU97788.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC508] gi|190902608|gb|EDV62341.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A] gi|190907446|gb|EDV67043.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11] gi|192957577|gb|EDV88022.1| regulator of nucleoside diphosphate kinase [Escherichia coli E110019] gi|194413971|gb|EDX30248.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171] gi|194423609|gb|EDX39599.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1] gi|208729275|gb|EDZ78876.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4206] gi|208732992|gb|EDZ81680.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4045] gi|208737142|gb|EDZ84826.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4042] gi|209158827|gb|ACI36260.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4115] gi|209777348|gb|ACI86986.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777350|gb|ACI86987.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777352|gb|ACI86988.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777354|gb|ACI86989.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777356|gb|ACI86990.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209911128|dbj|BAG76202.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE11] gi|215263724|emb|CAS08059.1| regulator of nucleoside diphosphate kinase [Escherichia coli O127:H6 str. E2348/69] gi|217321314|gb|EEC29738.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14588] gi|218350783|emb|CAU96475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 55989] gi|218359921|emb|CAQ97464.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI1] gi|218364319|emb|CAR01992.1| regulator of nucleoside diphosphate kinase [Escherichia coli S88] gi|218368969|emb|CAR16723.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI39] gi|218425998|emb|CAR06815.1| regulator of nucleoside diphosphate kinase [Escherichia coli ED1a] gi|218431041|emb|CAR11917.1| regulator of nucleoside diphosphate kinase [Escherichia coli UMN026] gi|222032371|emb|CAP75110.1| Regulator of nucleoside diphosphate kinase [Escherichia coli LF82] gi|226898627|gb|EEH84886.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA] gi|227838496|gb|EEJ48962.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972] gi|238863432|gb|ACR65430.1| regulator of nucleoside diphosphate kinase [Escherichia coli BW2952] gi|242376386|emb|CAQ31084.1| regulator of nucleoside diphosphate kinase [Escherichia coli BL21(DE3)] gi|253325449|gb|ACT30051.1| GreA/GreB family elongation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972592|gb|ACT38263.1| nucleoside diphosphate kinase regulator [Escherichia coli B str. REL606] gi|253976786|gb|ACT42456.1| nucleoside diphosphate kinase regulator [Escherichia coli BL21(DE3)] gi|254591177|gb|ACT70538.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14359] gi|257752512|dbj|BAI24014.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O26:H11 str. 11368] gi|257763115|dbj|BAI34610.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O111:H- str. 11128] gi|260450221|gb|ACX40643.1| GreA/GreB family elongation factor [Escherichia coli DH1] gi|281177760|dbj|BAI54090.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE15] gi|281599915|gb|ADA72899.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri 2002017] gi|284920411|emb|CBG33472.1| regulator of nucleoside diphosphate kinase [Escherichia coli 042] gi|290761436|gb|ADD55397.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7 str. CB9615] gi|291325250|gb|EFE64665.1| hypothetical protein ECCG_03607 [Escherichia coli B088] gi|291428459|gb|EFF01484.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412] gi|291433965|gb|EFF06938.1| kinase regulator protein [Escherichia coli B185] gi|291471914|gb|EFF14397.1| kinase regulator [Escherichia coli B354] gi|294491723|gb|ADE90479.1| regulator of nucleoside diphosphate kinase [Escherichia coli IHE3034] gi|298279347|gb|EFI20855.1| nucleoside diphosphate kinase regulator protein [Escherichia coli FVEC1302] gi|299878075|gb|EFI86286.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 196-1] gi|300304408|gb|EFJ58928.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 200-1] gi|300314248|gb|EFJ64032.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 175-1] gi|300355468|gb|EFJ71338.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 198-1] gi|300396083|gb|EFJ79621.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 69-1] gi|300400545|gb|EFJ84083.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 84-1] gi|300407175|gb|EFJ90713.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 45-1] gi|300412422|gb|EFJ95732.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 115-1] gi|300416713|gb|EFK00024.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 182-1] gi|300449633|gb|EFK13253.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 116-1] gi|300455463|gb|EFK18956.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 21-1] gi|300460680|gb|EFK24173.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 187-1] gi|300524426|gb|EFK45495.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 119-7] gi|300529570|gb|EFK50632.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 107-1] gi|300842638|gb|EFK70398.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 124-1] gi|300844536|gb|EFK72296.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 78-1] gi|301077633|gb|EFK92439.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 146-1] gi|305853720|gb|EFM54159.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101] gi|306907375|gb|EFN37880.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307552481|gb|ADN45256.1| regulator of nucleoside diphosphate kinase [Escherichia coli ABU 83972] gi|307627951|gb|ADN72255.1| nucleoside diphosphate kinase regulator [Escherichia coli UM146] gi|308120899|gb|EFO58161.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 145-7] gi|310337337|gb|EFQ02475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1827-70] gi|312290146|gb|EFR18029.1| regulator of nucleoside diphosphate kinase [Escherichia coli 2362-75] gi|312945158|gb|ADR25985.1| nucleoside diphosphate kinase regulator [Escherichia coli O83:H1 str. NRG 857C] gi|313647021|gb|EFS11477.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 2457T] gi|315059866|gb|ADT74193.1| regulator of nucleoside diphosphate kinase [Escherichia coli W] gi|315135277|dbj|BAJ42436.1| regulator of nucleoside diphosphate kinase [Escherichia coli DH1] gi|315255090|gb|EFU35058.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 85-1] gi|315287015|gb|EFU46430.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 110-3] gi|315292113|gb|EFU51465.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 153-1] gi|315299131|gb|EFU58385.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 16-3] gi|315616473|gb|EFU97090.1| regulator of nucleoside diphosphate kinase [Escherichia coli 3431] gi|320178397|gb|EFW53365.1| Regulator of nucleoside diphosphate kinase [Shigella boydii ATCC 9905] gi|320185416|gb|EFW60186.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri CDC 796-83] gi|320193018|gb|EFW67658.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC1212] gi|320194208|gb|EFW68840.1| Regulator of nucleoside diphosphate kinase [Escherichia coli WV_060327] gi|320198263|gb|EFW72867.1| Regulator of nucleoside diphosphate kinase [Escherichia coli EC4100B] gi|320638060|gb|EFX07824.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. G5101] gi|320643466|gb|EFX12636.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H- str. 493-89] gi|320648801|gb|EFX17428.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H- str. H 2687] gi|320654387|gb|EFX22434.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660068|gb|EFX27598.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320664865|gb|EFX32000.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. LSU-61] gi|323153670|gb|EFZ39918.1| regulator of nucleoside diphosphate kinase [Escherichia coli EPECa14] gi|323158937|gb|EFZ44948.1| regulator of nucleoside diphosphate kinase [Escherichia coli E128010] gi|323164059|gb|EFZ49867.1| regulator of nucleoside diphosphate kinase [Shigella sonnei 53G] gi|323170735|gb|EFZ56385.1| regulator of nucleoside diphosphate kinase [Escherichia coli LT-68] gi|323179914|gb|EFZ65471.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1180] gi|323184899|gb|EFZ70267.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1357] gi|323191248|gb|EFZ76512.1| regulator of nucleoside diphosphate kinase [Escherichia coli RN587/1] gi|323379570|gb|ADX51838.1| GreA/GreB family elongation factor [Escherichia coli KO11] gi|323938372|gb|EGB34626.1| hypothetical protein ERCG_00408 [Escherichia coli E1520] gi|323943025|gb|EGB39184.1| hypothetical protein ERDG_00362 [Escherichia coli E482] gi|323945085|gb|EGB41147.1| hypothetical protein EREG_03269 [Escherichia coli H120] gi|323952811|gb|EGB48679.1| hypothetical protein ERKG_00584 [Escherichia coli H252] gi|323958369|gb|EGB54075.1| hypothetical protein ERLG_00359 [Escherichia coli H263] gi|323963179|gb|EGB58747.1| hypothetical protein ERGG_00365 [Escherichia coli H489] gi|323972149|gb|EGB67362.1| hypothetical protein ERHG_01878 [Escherichia coli TA007] gi|323976407|gb|EGB71497.1| hypothetical protein ERFG_02843 [Escherichia coli TW10509] gi|324006326|gb|EGB75545.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 57-2] gi|324010532|gb|EGB79751.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 60-1] gi|324016122|gb|EGB85341.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 117-3] gi|324116685|gb|EGC10600.1| hypothetical protein ERBG_03361 [Escherichia coli E1167] gi|326341362|gb|EGD65154.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. 1044] gi|326345859|gb|EGD69598.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. 1125] gi|330910372|gb|EGH38882.1| regulator of nucleoside diphosphate kinase [Escherichia coli AA86] gi|331037909|gb|EGI10129.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736] gi|331044519|gb|EGI16646.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605] gi|331049897|gb|EGI21955.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718] gi|331054885|gb|EGI26894.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206] gi|331060396|gb|EGI32360.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143] gi|331066186|gb|EGI38070.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271] gi|331070618|gb|EGI41981.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280] gi|331080709|gb|EGI51883.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299] gi|332094282|gb|EGI99333.1| regulator of nucleoside diphosphate kinase [Shigella boydii 5216-82] gi|332097740|gb|EGJ02714.1| regulator of nucleoside diphosphate kinase [Shigella boydii 3594-74] gi|332104099|gb|EGJ07445.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9] gi|332341957|gb|AEE55291.1| regulator of nucleoside diphosphate kinase [Escherichia coli UMNK88] gi|332760859|gb|EGJ91147.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 4343-70] gi|332761226|gb|EGJ91512.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2747-71] gi|332763907|gb|EGJ94145.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-671] gi|332768128|gb|EGJ98313.1| prokaryotic transcription elongation factor GreA/GreB [Shigella flexneri 2930-71] gi|333007955|gb|EGK27431.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-218] gi|333010014|gb|EGK29449.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-272] gi|333020847|gb|EGK40107.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-227] gi|333021406|gb|EGK40656.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-304] Length = 136 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|296110218|ref|YP_003620599.1| ImpB/MucB/SamB family protein [Leuconostoc kimchii IMSNU 11154] gi|295831749|gb|ADG39630.1| ImpB/MucB/SamB family protein [Leuconostoc kimchii IMSNU 11154] Length = 440 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 D +F A+V VE+N K +V ++ + GLV SSP+A+ ++G Sbjct: 23 DSKSFYASVECVERNYNPLKALLVVMSEQENTNGGLVLASSPMAKKILG 71 >gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp. avium ATCC 25291] Length = 158 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ SP+A+AL G++ GD ++ P GEK E++ V Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155 >gi|329888405|ref|ZP_08267003.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta ATCC 11568] gi|328846961|gb|EGF96523.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta ATCC 11568] Length = 136 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 G L+ + RA+V + M + + + V+ +S + + Q+V ++AD+ +G V Sbjct: 33 GPAGLLQQELDRAKVCEPKAMPKNVVTLNRWLQYVDDHSPEVRRVQLVLPKDADIDAGRV 92 Query: 121 SISSPIARALIGKELGDIISVNAP 144 SI S + LIG + G S+N P Sbjct: 93 SILSYVGAGLIGLKEGQ--SINWP 114 >gi|146300052|ref|YP_001194643.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] gi|146154470|gb|ABQ05324.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] Length = 143 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 37/72 (51%) Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D ++ V+ + N+ +K +VG ++ V +S+ S A++G ++GD+I A Sbjct: 68 DVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPA 127 Query: 144 PGGEKTYEILQV 155 G EIL+V Sbjct: 128 KKGHLKLEILKV 139 >gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 158 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ SP+A+AL G++ GD ++ P GEK E++ V Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155 >gi|330952175|gb|EGH52435.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae Cit 7] Length = 135 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|302189437|ref|ZP_07266110.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. syringae 642] gi|330941155|gb|EGH44034.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 135 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104] gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104] Length = 158 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ SP+A+AL G++ GD ++ P GEK E++ V Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155 >gi|332308302|ref|YP_004436153.1| GreA/GreB family elongation factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175631|gb|AEE24885.1| GreA/GreB family elongation factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 126 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 DL+E EYQ E L + +EN + RA ++ + + +A G+ V+ +S Sbjct: 10 ADLAE-LEYQL--ERAKLPADTVRAIENELDRASIVACKDLPENVVAIGSKVTFKILDSQ 66 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + + +S+ +PI ALIG G I+ GE++ EI+ V Sbjct: 67 KIFTKTLCLPHDTIKYEDSISVFAPIGSALIGLSTGQCITWQTQRGEQSVEIINV 121 >gi|261344908|ref|ZP_05972552.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii DSM 4541] gi|282567048|gb|EFB72583.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii DSM 4541] Length = 136 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 +P II +A L E Y + LN+ EL+ RA+++ + D + Sbjct: 3 KPTIIINDLDAERLDALMEQPAYAGTPVAEALND----ELD----RADIVSPQEIPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 +T+ ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 55 TMNSTIRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114 Query: 147 EKT-YEILQVLW 157 +T +L++++ Sbjct: 115 VETRVRVLEIVY 126 >gi|15601365|ref|NP_232996.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587466|ref|ZP_01677234.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 2740-80] gi|121725791|ref|ZP_01679091.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52] gi|147672055|ref|YP_001215388.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O395] gi|153817965|ref|ZP_01970632.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC 8457] gi|153830764|ref|ZP_01983431.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39] gi|227812174|ref|YP_002812184.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2] gi|229506224|ref|ZP_04395733.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX 330286] gi|229509917|ref|ZP_04399397.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33] gi|229516522|ref|ZP_04405969.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9] gi|229525966|ref|ZP_04415370.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv. albensis VL426] gi|229528560|ref|ZP_04417951.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 12129(1)] gi|229605764|ref|YP_002876468.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MJ-1236] gi|254849767|ref|ZP_05239117.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10] gi|255746617|ref|ZP_05420564.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS 101] gi|262158791|ref|ZP_06029904.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE 91/1] gi|262168458|ref|ZP_06036154.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27] gi|298499416|ref|ZP_07009222.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757] gi|9658019|gb|AAF96508.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548301|gb|EAX58367.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 2740-80] gi|121631556|gb|EAX63924.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52] gi|126511503|gb|EAZ74097.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC 8457] gi|146314438|gb|ABQ18978.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395] gi|148873748|gb|EDL71883.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39] gi|227011316|gb|ACP07527.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2] gi|227015333|gb|ACP11542.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395] gi|229334922|gb|EEO00408.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 12129(1)] gi|229336124|gb|EEO01142.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv. albensis VL426] gi|229346403|gb|EEO11374.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9] gi|229352362|gb|EEO17302.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33] gi|229356575|gb|EEO21493.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX 330286] gi|229372250|gb|ACQ62672.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MJ-1236] gi|254845472|gb|EET23886.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10] gi|255736371|gb|EET91769.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS 101] gi|262022987|gb|EEY41692.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27] gi|262029364|gb|EEY48015.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE 91/1] gi|297541397|gb|EFH77448.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757] gi|327485632|gb|AEA80038.1| Regulator of nucleoside diphosphate kinase [Vibrio cholerae LMA3894-4] Length = 135 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130 RA V++ + M D + +TV S + +V DV+S VSI +P+ AL Sbjct: 40 RATVLEPAEMPEDVVTMNSTVRFKFLGSDEVMEKTLV--YPNDVKSSADVSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|333007715|gb|EGK27192.1| regulator of nucleoside diphosphate kinase [Shigella flexneri VA-6] Length = 136 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLRDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 VATHLEVLEL 124 >gi|260564705|ref|ZP_05835190.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|265989928|ref|ZP_06102485.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265992967|ref|ZP_06105524.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 3 str. Ether] gi|260152348|gb|EEW87441.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|262763837|gb|EEZ09869.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 3 str. Ether] gi|263000597|gb|EEZ13287.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 1 str. Rev.1] Length = 113 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 R A G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A Sbjct: 2 RRADGSTVEF-RANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTAR 60 Query: 145 GGEKT-YEILQVL 156 G++ +L+V+ Sbjct: 61 DGKQHELNVLKVM 73 >gi|330900741|gb|EGH32160.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 123 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|300724985|ref|YP_003714310.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila ATCC 19061] gi|297631527|emb|CBJ92234.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila ATCC 19061] Length = 136 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N G L + RAE++ + D + + + ++ S +++ +V + Sbjct: 27 NTGIADALNEELDRAEILPPVDIPADVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTK 86 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +S+ +P+ AL+G + I+ P GE+T ++L++L+ Sbjct: 87 QLSVMAPLGAALLGLRVNGEITCQLPNGEETRIKVLEILY 126 >gi|325271635|ref|ZP_08138137.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51] gi|324103239|gb|EGC00584.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51] Length = 136 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 L G A E + A+V+ + + + V E+ SG + +V ++A Sbjct: 24 LDESTPGVFALQEELDRAAQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + G VS+ +PI AL+G +G+ I APGG+ Sbjct: 84 AE-GKVSVLAPIGCALLGLSVGEQIDWPAPGGK 115 >gi|212635479|ref|YP_002312004.1| transcription elongation factor [Shewanella piezotolerans WP3] gi|212556963|gb|ACJ29417.1| Transcription elongation factor [Shewanella piezotolerans WP3] Length = 190 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 23/37 (62%) Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 L++ SPI L+ +E+GD +S+N G YEI+ + Sbjct: 153 LITPQSPIGEKLMSREVGDEVSINVAGKRHHYEIVGI 189 >gi|254429947|ref|ZP_05043654.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881] gi|196196116|gb|EDX91075.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881] Length = 131 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA V+ M D + + + E+ G + + +V Q+ + VSI +P Sbjct: 31 LEEELLRATVVAPEAMPADVVTMNSRIRCREQARGREMSLTLVYPQDNGPER--VSILAP 88 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155 + AL+G +G I AP G+ EIL V Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKILKLEILAV 119 >gi|290476785|ref|YP_003469696.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii SS-2004] gi|289176129|emb|CBJ82934.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii SS-2004] Length = 136 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + D + + + ++ S +++ +V + +S+ +P+ A Sbjct: 38 LDRAEIVPPVEIPPDVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKHLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G + D I+ P EKT ++L++++ Sbjct: 98 LLGLRVNDEITWQLPNSEKTRIKVLEIIY 126 >gi|28899114|ref|NP_798719.1| hypothetical protein VP2341 [Vibrio parahaemolyticus RIMD 2210633] gi|28807338|dbj|BAC60603.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 185 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 22 RQQEERPRII-----KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q EE+ RI +AI A + E+ A E L G R+ E E+ + + Sbjct: 38 HQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQY 97 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-----------DQEADVQSGLVSI 122 + I + I GA V LV++N+ +K+ + +G DQE V ++ Sbjct: 98 RSMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFV----LTA 151 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+GKE G+ + YE++ V Sbjct: 152 KSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTVF 185 >gi|26991899|ref|NP_747324.1| nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440] gi|148550332|ref|YP_001270434.1| nucleoside diphosphate kinase regulator [Pseudomonas putida F1] gi|24987021|gb|AAN70788.1|AE016722_9 nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440] gi|148514390|gb|ABQ81250.1| GreA/GreB family elongation factor [Pseudomonas putida F1] gi|313501200|gb|ADR62566.1| Rnk [Pseudomonas putida BIRD-1] Length = 136 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++ + RAE V+ + + + V E+ SG + +V ++A + G VSI + Sbjct: 34 LQDELDRAEQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILA 92 Query: 125 PIARALIGKELGDIISVNAPGGE 147 PI AL+G +G+ I APGG+ Sbjct: 93 PIGCALLGLSVGEQIDWPAPGGK 115 >gi|257482604|ref|ZP_05636645.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330892779|gb|EGH25440.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. mori str. 301020] gi|330984809|gb|EGH82912.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012755|gb|EGH92811.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 135 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQVGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|327481647|gb|AEA84957.1| transcription elongation factor [Pseudomonas stutzeri DSM 4166] Length = 158 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 8/100 (8%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADV 115 R+ E+E + + S R+ GA + L + G ++ + + D Q Sbjct: 60 RLHEIETALAAYRNLQAGVSSDGRVRVGALLCL--DHDGAERWFFLGPDAAGLKLQHDGR 117 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + +++ SP+ + L+G+E+GD + + G + YE+LQ+ Sbjct: 118 EILVITARSPLGQGLLGREVGDEVELRVHGQLQRYEVLQI 157 >gi|227487834|ref|ZP_03918150.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51867] gi|227542474|ref|ZP_03972523.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51866] gi|227092161|gb|EEI27473.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51867] gi|227181672|gb|EEI62644.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 5/148 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V K +T + +++EL+ + RP I I+E R GDL ENA Y AA++ Q E Sbjct: 4 VQKTYITPESKAALERELKALI-DNRPAIAAEINERREEGDLKENAGYDAARDQQAQEES 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ + + G+ G+ V + + DK+ + I A L Sbjct: 63 RIREIEEMLKNSTTERTALKEGE-AQVGSVVHVYYNDDENDKETFLIGTRATASDNPDLE 121 Query: 121 SIS--SPIARALIGKELGDIISVNAPGG 146 + S SP+ A++G G+ AP G Sbjct: 122 TYSELSPLGAAVLGATEGETRQYTAPNG 149 >gi|104784263|ref|YP_610761.1| nucleoside diphosphate kinase regulator [Pseudomonas entomophila L48] gi|95113250|emb|CAK17978.1| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila L48] Length = 136 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++ + RAE V+ + + + V E SG + +V ++A + G VSI + Sbjct: 34 LQDELDRAEQVVGHEEVPAGVVTMNSRVHCREIASGKDYHLTLVYPKDAGPE-GNVSILA 92 Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155 PI AL+G +GD I APGG+ E+L V Sbjct: 93 PIGCALLGLSVGDQIDWPAPGGKTLKLELLAV 124 >gi|153836776|ref|ZP_01989443.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810] gi|260895902|ref|ZP_05904398.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466] gi|308094401|ref|ZP_07662909.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034] gi|308125781|ref|ZP_05777348.2| transcription elongation factor [Vibrio parahaemolyticus K5030] gi|308126243|ref|ZP_05908759.2| transcription elongation factor [Vibrio parahaemolyticus AQ4037] gi|149749922|gb|EDM60667.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810] gi|308089372|gb|EFO39067.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466] gi|308091428|gb|EFO41123.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034] gi|308108568|gb|EFO46108.1| transcription elongation factor [Vibrio parahaemolyticus AQ4037] gi|308115313|gb|EFO52853.1| transcription elongation factor [Vibrio parahaemolyticus K5030] Length = 159 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 22 RQQEERPRII-----KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q EE+ RI +AI A + E+ A E L G R+ E E+ + + Sbjct: 12 HQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-----------DQEADVQSGLVSI 122 + I + I GA V LV++N+ +K+ + +G DQE V ++ Sbjct: 72 RSMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFV----LTA 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+GKE G+ + YE++ V Sbjct: 126 KSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTVF 159 >gi|320326558|gb|EFW82609.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331376|gb|EFW87317.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330881316|gb|EGH15465.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RA+ V+ + + + V E+ SG + ++V Q+A Sbjct: 33 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 92 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G VS+ +P+ AL+G +G I APGG+ Sbjct: 93 A-DGTVSVLAPMGSALLGLHVGQHIDWPAPGGK 124 >gi|329903488|ref|ZP_08273505.1| outer membrane autotransporter [Oxalobacteraceae bacterium IMCC9480] gi|327548330|gb|EGF33017.1| outer membrane autotransporter [Oxalobacteraceae bacterium IMCC9480] Length = 1431 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P++ A+ +A A GD + A L+N + ++ + I R D++ I Sbjct: 1208 PQLASALPDAMAIGDAFSSQLGYAVTRLENPTKAQIMQALRRIAR----DMAPADSVVIY 1263 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 F +VEK + Y I D ADV SG +S ++ ++RAL Sbjct: 1264 FAGHGDMVEKTG---EGYWIPSDARADVPSGWIS-NADVSRAL 1302 >gi|254562838|ref|YP_003069933.1| transcription elongation factor GreA-related [Methylobacterium extorquens DM4] gi|254270116|emb|CAX26106.1| putative transcription elongation factor GreA-related [Methylobacterium extorquens DM4] Length = 75 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+ V + ++G ++ +V EAD++ G VSI +PI ALIG G I GE Sbjct: 1 MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 60 >gi|71736881|ref|YP_277097.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557434|gb|AAZ36645.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 135 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V E+ SG + ++V Q+A G VS+ +P+ AL+G +G I APG Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLHVGQHIDWPAPG 113 Query: 146 GE 147 G+ Sbjct: 114 GK 115 >gi|322834683|ref|YP_004214710.1| GreA/GreB family elongation factor [Rahnella sp. Y9602] gi|321169884|gb|ADW75583.1| GreA/GreB family elongation factor [Rahnella sp. Y9602] Length = 136 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + D + + V E G++ +V +S+ +P+ A Sbjct: 38 LDRAEILPPEQIPADVVTMNSKVRFTEGKDGEEHIRTLVYPAALKDSKEQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157 L+G G I+ P GE + E+L++L+ Sbjct: 98 LLGLRTGGSITWEMPNGENSRIEVLELLY 126 >gi|332163116|ref|YP_004299693.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604001|emb|CBY25499.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667346|gb|ADZ43990.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862799|emb|CBX72941.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica W22703] Length = 136 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ A Sbjct: 38 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157 L+G + D IS PGG E +L++L+ Sbjct: 98 LLGLHVNDEISWKLPGGDEARIIVLELLY 126 >gi|255614355|ref|XP_002539587.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223504659|gb|EEF22796.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] Length = 243 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE--GRMA 64 V+ FD + LR E R R+++ RA GD+ +A ++ ++ R+ Sbjct: 32 VSGAMFDAMSAALRSEAVEPRARVLRL----RANGDVFCTGRERAGRDAVSIRAEVARLI 87 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLV 95 EL+ ++ +I ++ + GD FG ++++ Sbjct: 88 ELKRLLRNTSLISLAQVHGDAFGFGFGLAIL 118 >gi|298209251|ref|YP_003717430.1| GreA/GreB family elongation factor [Croceibacter atlanticus HTCC2559] gi|83849178|gb|EAP87047.1| GreA/GreB family elongation factor [Croceibacter atlanticus HTCC2559] Length = 139 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%) Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90 YG L E EY K + N++ + + L + + A+++D + D I F + Sbjct: 3 YGSLIIEKKEYVLLKRILNISSYAKDFDTQRAIKCLNDNLKNAQILDEEDVPTDVIRFNS 62 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150 + LVE N KK+ +V +++ +S+ +P+ L G GD++ G + Sbjct: 63 NI-LVEFNENLKKHLHLVIPASKNIKEDKISVITPLGALLFGCAEGDVLHEKLGSGIQHL 121 Query: 151 EILQVL 156 +I +V+ Sbjct: 122 QIKKVI 127 >gi|156975529|ref|YP_001446436.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116] gi|156527123|gb|ABU72209.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116] Length = 159 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 85 RIAFGATVSLVEKNSGDKKNY--QIVGDQEADVQSGLVSI---SSPIARALIGKELGDII 139 RIA GA V LV++N +K + G + Q V + SP+ AL+GKE G+ I Sbjct: 83 RIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGCALVGKEEGEDI 142 Query: 140 SVNAPGGEKTYEILQVL 156 V YE++ V Sbjct: 143 DVKIGDKTTCYEVVTVC 159 >gi|269960572|ref|ZP_06174944.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834649|gb|EEZ88736.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 159 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 85 RIAFGATVSLVEKNSGDKKNY--QIVGDQEADVQSGLVSI---SSPIARALIGKELGDII 139 RIA GA V LV++N +K + G + Q V + SP+ RAL+GKE G+ + Sbjct: 83 RIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGRALMGKEEGEEV 142 Query: 140 SVNAPGGEKTYEILQVL 156 + YE++ + Sbjct: 143 EMKIGDKTTCYEVVTIC 159 >gi|170767795|ref|ZP_02902248.1| regulator of nucleoside diphosphate kinase [Escherichia albertii TW07627] gi|170123283|gb|EDS92214.1| regulator of nucleoside diphosphate kinase [Escherichia albertii TW07627] Length = 136 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN AEL+ RA++ M + + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHNVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMDPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKTY-EILQV 155 T+ E+L++ Sbjct: 115 TATHLEVLEL 124 >gi|126464873|ref|YP_001041849.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides ATCC 17029] gi|126106688|gb|ABN79213.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] Length = 137 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 53 KELQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105 + L L +A L ++ +T A ++ + +S D + G+ V + + Sbjct: 18 ERLDTLAGAAIARLPDVAYPLITKLTSARLLAPARLSSDVVTIGSEVLYHDDQGARDRRV 77 Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 + ++AD+ VSI +P+ AL+G GD GE ++ +LQV Sbjct: 78 TLSWPEDADISRRSVSILTPVGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128 >gi|309700850|emb|CBJ00147.1| regulator of nucleoside diphosphate kinase [Escherichia coli ETEC H10407] Length = 136 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA++ M D + + V + G+ + +V + + +S+ +P+ A Sbjct: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 Query: 130 LIGKELGDIISVNAPGGEKTY-EILQV 155 L+G +GD I PGG T+ E+L++ Sbjct: 98 LLGLRVGDSIHWELPGGVATHLEVLEL 124 >gi|258626677|ref|ZP_05721502.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603] gi|258581028|gb|EEW05952.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603] Length = 136 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130 RA V++ M + + +TV K SG + + DV+S VSI +P+ AL Sbjct: 41 RATVLEPEEMPENVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126 >gi|8778326|gb|AAF79335.1|AC002304_28 F14J16.21 [Arabidopsis thaliana] Length = 735 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 + R +A S+ YGD E Y+ KE +NE R EL + A STM+ + Sbjct: 457 KERREEATSDDSKYGDFMETMIYEVEKEGDTINEERSVELILSLLIASYETTSTMTALTV 516 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 F A V K+ ++ + AD +SG+ Sbjct: 517 KFIAENPKVLMEL--KREHETILQNRADKESGV 547 >gi|258622671|ref|ZP_05717691.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573] gi|258585048|gb|EEW09777.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573] Length = 136 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130 RA V++ M + + +TV K SG + + DV+S VSI +P+ AL Sbjct: 41 RATVLEPEEMPENVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126 Searching..................................................done Results from round 2 >gi|227822120|ref|YP_002826091.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234] gi|227341120|gb|ACP25338.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234] Length = 255 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 111/157 (70%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 98 MVDKVPMTQGGFANLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 157 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 158 GRVSELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKAGRI 217 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 218 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 254 >gi|110680576|ref|YP_683583.1| transcription elongation factor GreA [Roseobacter denitrificans OCh 114] gi|109456692|gb|ABG32897.1| transcription elongation factor GreA [Roseobacter denitrificans OCh 114] Length = 312 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 157 MDKIPMTRKGHSDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 216 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++ Sbjct: 217 RIKELEGVLGLAEVIDPSKMSG-AIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 275 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K YE+L++++ Sbjct: 276 IKSPIARALIGKDEGDSVEVRTPGGQKAYEVLKIVY 311 >gi|315122111|ref|YP_004062600.1| transcription elongation factor GreA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495513|gb|ADR52112.1| transcription elongation factor GreA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 141/158 (89%), Positives = 151/158 (95%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR+YGDLSENAEYQAAKELQ++NE Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARSYGDLSENAEYQAAKELQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELENI T AEVIDIS MSG ++AFGATVSLV++ SGDKKNYQIVGDQEADVQSGLV Sbjct: 61 GRIAELENITTCAEVIDISKMSGSKVAFGATVSLVDETSGDKKNYQIVGDQEADVQSGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKELGD +SVNAPGG+K YEILQVLWI Sbjct: 121 SISSPIARALIGKELGDTVSVNAPGGQKNYEILQVLWI 158 >gi|296445401|ref|ZP_06887359.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] gi|296257162|gb|EFH04231.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] Length = 157 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 97/157 (61%), Positives = 131/157 (83%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ G+ + ELR RQQ ERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPMTAAGYAALDTELRHRQQTERPRIIQAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ ++RAEVID+S +SG I FGATV+LV++++ ++K YQIVG+ EAD ++G VS Sbjct: 61 RIADLEDKLSRAEVIDVSKLSGSTIKFGATVTLVDEDTEEEKAYQIVGEPEADAKNGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARALIGK+ GD + V PGG K+YEIL+V ++ Sbjct: 121 IASPIARALIGKKAGDTVEVKTPGGGKSYEILKVAFV 157 >gi|209965306|ref|YP_002298221.1| transcription elongation factor GreA [Rhodospirillum centenum SW] gi|209958772|gb|ACI99408.1| transcription elongation factor GreA [Rhodospirillum centenum SW] Length = 157 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++GF ++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKVPMTARGFTRLQEELKQLKSVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I+RAEVID + +SG I FGATV+L ++++ ++ YQIVG E+D+++G +S Sbjct: 61 RVMELEDKISRAEVIDPTKLSGSAIKFGATVTLADEDTDEEVTYQIVGQDESDIKAGFIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK++GD + V PGG K+YEI + + Sbjct: 121 ITSPLARALIGKQVGDSVEVTTPGGSKSYEITGIQF 156 >gi|163761166|ref|ZP_02168243.1| transcription elongation factor (transcript cleavage factor) protein [Hoeflea phototrophica DFL-43] gi|162281717|gb|EDQ32011.1| transcription elongation factor (transcript cleavage factor) protein [Hoeflea phototrophica DFL-43] Length = 158 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 107/157 (68%), Positives = 132/157 (84%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T G+ K+Q+ELRWRQQ ERPRII+AISEARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGYTKLQEELRWRQQSERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ +RAE+ID+S MSGD + FGATVSLV++++ ++K YQIVGDQEADV+ G + Sbjct: 61 GRIGELEDYTSRAEIIDVSKMSGDTVKFGATVSLVDEDTDEEKTYQIVGDQEADVKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPI+RALIGK +GD I V APGG K YEIL V W Sbjct: 121 SISSPISRALIGKSVGDSIEVVAPGGSKAYEILAVKW 157 >gi|182677861|ref|YP_001832007.1| transcription elongation factor GreA [Beijerinckia indica subsp. indica ATCC 9039] gi|238691231|sp|B2IHJ7|GREA_BEII9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|182633744|gb|ACB94518.1| transcription elongation factor GreA [Beijerinckia indica subsp. indica ATCC 9039] Length = 157 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 96/156 (61%), Positives = 133/156 (85%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T +G+ + +EL+ RQQEERPRII+AI+EAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKFPMTPEGYHALDEELKRRQQEERPRIIQAIAEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAE+ID+S +SG+ + FGATV+LV++++ ++K YQIVG+ EADV++G VS Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGNTVMFGATVTLVDEDTEEEKIYQIVGESEADVKAGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP ARALIGK++GD + VN PGG K+YEIL V + Sbjct: 121 ITSPTARALIGKKIGDSVEVNTPGGGKSYEILNVAF 156 >gi|332974639|gb|EGK11556.1| transcription elongation factor GreA [Kingella kingae ATCC 23330] Length = 186 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 81/159 (50%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ KIP+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q E Sbjct: 28 IMKKIPLTVHGAERLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIE 87 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELEN ++ A++ID + D +I FGATV+L++ +S ++ YQIVGD EAD++ Sbjct: 88 GRIAELENKLSHAQIIDPKEIHADGKIVFGATVNLMDLDSDEESCYQIVGDDEADIKLFK 147 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIARALIGKE GD+ V AP G + YEIL V +I Sbjct: 148 ISVNSPIARALIGKEEGDVAEVQAPSGIREYEILTVQYI 186 >gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] gi|254040117|gb|ACT56913.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62] Length = 158 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV Sbjct: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 >gi|241205678|ref|YP_002976774.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859568|gb|ACS57235.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 158 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 110/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTDEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|148560214|ref|YP_001259382.1| transcription elongation factor GreA [Brucella ovis ATCC 25840] gi|148371471|gb|ABQ61450.1| transcription elongation factor GreA [Brucella ovis ATCC 25840] Length = 203 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIQFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|83309802|ref|YP_420066.1| transcription elongation factor GreA [Magnetospirillum magneticum AMB-1] gi|82944643|dbj|BAE49507.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 157 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 124/156 (79%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE+II+RA+VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S Sbjct: 61 RVSELEDIISRAQVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK LGD + V APGG K+YEI+ V + Sbjct: 121 VHSPLARALIGKHLGDTVEVTAPGGSKSYEIVDVRF 156 >gi|237815897|ref|ZP_04594894.1| transcription elongation factor GreA [Brucella abortus str. 2308 A] gi|237789195|gb|EEP63406.1| transcription elongation factor GreA [Brucella abortus str. 2308 A] Length = 203 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|209550295|ref|YP_002282212.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238058236|sp|B5ZXG2|GREA_RHILW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|209536051|gb|ACI55986.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 158 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 111/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|116253164|ref|YP_769002.1| transcription elongation factor GreA [Rhizobium leguminosarum bv. viciae 3841] gi|7387717|sp|O68546|GREA_RHILV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123081835|sp|Q1MDR7|GREA_RHIL3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2944085|gb|AAC05214.1| transcription elongation factor homolog [Rhizobium leguminosarum] gi|115257812|emb|CAK08910.1| putative transcription elongation factor [Rhizobium leguminosarum bv. viciae 3841] Length = 158 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 110/157 (70%), Positives = 137/157 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|144897958|emb|CAM74822.1| Prokaryotic transcription elongation factor GreA [Magnetospirillum gryphiswaldense MSR-1] Length = 157 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ ELR + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPAGLTTLEDELRNLKAVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE++I+RA+VIDI+ MSGD++ FGATV+L +++S D+ Y IVG EAD++SG +S Sbjct: 61 RVAELEDVISRAQVIDIALMSGDQVRFGATVTLADEDSDDEVVYTIVGAHEADIKSGRMS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ARALIGK +GD + V PGG K+YE++ V ++ Sbjct: 121 VHSPLARALIGKHIGDTVEVTTPGGSKSYEVVDVRFV 157 >gi|15965326|ref|NP_385679.1| transcription elongation factor GreA [Sinorhizobium meliloti 1021] gi|150396472|ref|YP_001326939.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419] gi|307307952|ref|ZP_07587677.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|307317183|ref|ZP_07596624.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|7387719|sp|P56894|GREA_RHIME RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042248|sp|A6U8X4|GREA_SINMW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|6224910|gb|AAF06007.1|AF193023_1 GreA [Sinorhizobium meliloti] gi|15074506|emb|CAC46152.1| Transcription elongation factor [Sinorhizobium meliloti 1021] gi|51451367|gb|AAU03120.1| GreA [Sinorhizobium meliloti] gi|150027987|gb|ABR60104.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419] gi|306897271|gb|EFN28016.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306901568|gb|EFN32171.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 158 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 111/157 (70%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G + Sbjct: 61 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 157 >gi|190892720|ref|YP_001979262.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CIAT 652] gi|238692510|sp|B3PUK3|GREA_RHIE6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|190697999|gb|ACE92084.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CIAT 652] gi|327192705|gb|EGE59642.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CNPAF512] Length = 158 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 112/157 (71%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|218671794|ref|ZP_03521463.1| transcription elongation factor GreA [Rhizobium etli GR56] Length = 158 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 110/157 (70%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGHKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|30249624|ref|NP_841694.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] gi|30138987|emb|CAD85571.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 173 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T G +K++ EL + RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 16 MNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++I+ +T++ D FGAT+ L++ + YQIVGD EAD++ G + Sbjct: 76 RIAELESKLSNAQIINPATLNADGACVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GDI V APGG + YEIL V +I Sbjct: 136 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVKYI 173 >gi|110634467|ref|YP_674675.1| transcription elongation factor GreA [Mesorhizobium sp. BNC1] gi|123353513|sp|Q11GG5|GREA_MESSB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|110285451|gb|ABG63510.1| transcription elongation factor GreA [Chelativorans sp. BNC1] Length = 157 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 103/156 (66%), Positives = 138/156 (88%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G++ +++ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTLAGYESLKEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE++I RAEVID++ +SGD + FGATV LV++++ ++K YQIVGDQEADV+SG +S Sbjct: 61 RISELEDLIARAEVIDVTKLSGDTVKFGATVVLVDEDTEEEKTYQIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD+I VNAPGG + YE+L+V + Sbjct: 121 ISSPIARALIGKGVGDLIEVNAPGGARGYEVLRVQY 156 >gi|86358571|ref|YP_470463.1| transcription elongation factor GreA [Rhizobium etli CFN 42] gi|123738296|sp|Q2K600|GREA_RHIEC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|86282673|gb|ABC91736.1| transcription elongation factor (transcript cleavage factor) protein [Rhizobium etli CFN 42] Length = 158 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 111/157 (70%), Positives = 136/157 (86%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157 >gi|294634505|ref|ZP_06713040.1| transcription elongation factor, cleaves 3 nucleotide of paused mRNA [Edwardsiella tarda ATCC 23685] gi|291092019|gb|EFE24580.1| transcription elongation factor, cleaves 3 nucleotide of paused mRNA [Edwardsiella tarda ATCC 23685] Length = 198 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 41 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 100 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FGATVS+ ++ D++ Y+IVGD EAD + L+ Sbjct: 101 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGATVSVENVDTEDQQTYRIVGDDEADFKHNLI 160 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE G+++++ PGGE YEIL+V ++ Sbjct: 161 SVNSPIARGLIGKEEGEVVTIKTPGGEVEYEILKVEYL 198 >gi|15889462|ref|NP_355143.1| transcription elongation factor GreA [Agrobacterium tumefaciens str. C58] gi|25452989|sp|Q8UDE5|GREA_AGRT5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|15157330|gb|AAK87928.1| transcription elongation facto [Agrobacterium tumefaciens str. C58] Length = 158 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 110/157 (70%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQGGFVKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID+S MSG +I FGATV L++++S ++K YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEEKTYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157 >gi|114328953|ref|YP_746110.1| transcription elongation factor GreA [Granulibacter bethesdensis CGDNIH1] gi|114317127|gb|ABI63187.1| transcription elongation factor greA [Granulibacter bethesdensis CGDNIH1] Length = 157 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 122/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T+ G +++ ELR + ERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKFPMTAGGLQRLEDELRQLKSVERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID ST+SGD++ FGA V +V++ + + +YQIVG EAD++ GL+S Sbjct: 61 RIEELEVIVSAAEVIDPSTLSGDQVKFGAHVQIVDEETDKEASYQIVGLHEADIKQGLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSP+A+ALIGK+ GD ISV APGG+++YEIL V + Sbjct: 121 VSSPLAKALIGKKPGDTISVPAPGGDRSYEILSVRF 156 >gi|154246690|ref|YP_001417648.1| transcription elongation factor GreA [Xanthobacter autotrophicus Py2] gi|154160775|gb|ABS67991.1| transcription elongation factor GreA [Xanthobacter autotrophicus Py2] Length = 168 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 128/156 (82%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G+ + QEL+ RQQ ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 12 MEKIPMTAAGYAALAQELKQRQQVERPRIISAISEARAHGDLSENAEYHAAKEQQSLNEG 71 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ ++RAEVID+S +SGD + FGATV+LV++++ ++K +QIVGD EAD ++G +S Sbjct: 72 RVADLEDKLSRAEVIDVSKLSGDIVKFGATVTLVDEDTEEEKVWQIVGDSEADAKAGRIS 131 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+ARALIGK+ G + V P G +++EI+ V W Sbjct: 132 ISSPVARALIGKKKGASVEVVTPKGARSFEIVAVRW 167 >gi|47716785|gb|AAT37570.1| GreA [Sinorhizobium meliloti] Length = 163 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 111/157 (70%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 6 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G + Sbjct: 66 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 126 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 162 >gi|323139044|ref|ZP_08074103.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242] gi|322395704|gb|EFX98246.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242] Length = 157 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 98/157 (62%), Positives = 133/157 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ G+ + +ELR RQQE+RPRII+ ISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPMTAPGYAALAEELRRRQQEDRPRIIQQISEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAEVID+S ++G I FGATV++V++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RIAELEDKLSRAEVIDVSKLTGSTIKFGATVTVVDEDTDEEKAYQIVGETEADVKSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARALIGK +GD + V PGG K+YEIL+V ++ Sbjct: 121 ITSPIARALIGKTVGDTVEVKTPGGGKSYEILKVAFV 157 >gi|269137754|ref|YP_003294454.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267983414|gb|ACY83243.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304557811|gb|ADM40475.1| Transcription elongation factor GreA [Edwardsiella tarda FL6-60] Length = 158 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FG+TVS+ ++ D++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLDTEDQQTYRIVGDDEADFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD++++ PGGE YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILKVEYL 158 >gi|312795594|ref|YP_004028516.1| transcription elongation factor greA [Burkholderia rhizoxinica HKI 454] gi|312167369|emb|CBW74372.1| Transcription elongation factor greA [Burkholderia rhizoxinica HKI 454] Length = 179 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 22 MSTIPLTKRGADQLRDELQRLKSVERPSVIHAIAEARAQGDLSENAEYDAAKEKQAFIEG 81 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID + D R+ FGATV L + +SGDK YQIVGD EAD++ GL+ Sbjct: 82 RIAELESKLSAAQIIDPKAVDADGRVVFGATVDLEDLDSGDKVTYQIVGDDEADLEHGLI 141 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIARALIGK GD+ +V AP G + YEI+ V + Sbjct: 142 SVSSPIARALIGKFEGDVAAVQAPSGVREYEIIAVRY 178 >gi|222086556|ref|YP_002545090.1| transcription elongation factor (transcript cleavage factor) protein [Agrobacterium radiobacter K84] gi|254799543|sp|B9J753|GREA_AGRRK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221724004|gb|ACM27160.1| transcription elongation factor (transcript cleavage factor) protein [Agrobacterium radiobacter K84] Length = 158 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 108/157 (68%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID++ MSG +I FGA V L+++++ ++K+YQIVGDQEADV++G + Sbjct: 61 GRIGELEDLTARAEVIDLTKMSGSKIKFGAKVKLIDEDTEEEKSYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL + W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKAYEILSISW 157 >gi|162149110|ref|YP_001603571.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] gi|161787687|emb|CAP57283.1| Transcription elongation factor greA [Gluconacetobacter diazotrophicus PAl 5] Length = 157 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 125/156 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EG Sbjct: 1 MQKFPMTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S Sbjct: 61 RILELEDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSP+A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 121 VSSPLAKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 156 >gi|329890723|ref|ZP_08269066.1| transcription elongation factor greA [Brevundimonas diminuta ATCC 11568] gi|328846024|gb|EGF95588.1| transcription elongation factor greA [Brevundimonas diminuta ATCC 11568] Length = 157 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +L+ + ERP +I AI+EAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYRSLDDQLKQLKSVERPSVIAAIAEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AE+E+ ++RA+VID+S +SGD++ FGATV+ V++++ ++ YQIVG+ EADV+ G +S Sbjct: 61 SIAEIEDKLSRAQVIDVSKLSGDQVKFGATVTFVDEDTEEEGVYQIVGEHEADVKLGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARALI KE+GD++ VN PGG K YEIL+V W Sbjct: 121 IASPIARALISKEVGDVVEVNTPGGVKAYEILKVEW 156 >gi|74317147|ref|YP_314887.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] gi|74056642|gb|AAZ97082.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] Length = 158 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 87/157 (55%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MTKFPLTVVGAEKLRAELQHLKSVQRPAVIQAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A++ID +T+ D RI FGATV L + SGD YQIVGD EAD++ G + Sbjct: 61 RIAELEGKLSNAQIIDPTTLDADGRIVFGATVDLEDVESGDSVTYQIVGDDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIARALIGK GD + V APGG + YE+L VL+ Sbjct: 121 SVSSPIARALIGKYAGDAVDVQAPGGVRQYEVLDVLY 157 >gi|238918415|ref|YP_002931929.1| hypothetical protein NT01EI_0456 [Edwardsiella ictaluri 93-146] gi|238867983|gb|ACR67694.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 158 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FG+TVS+ N+ D++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLNTEDQQTYRIVGDDEADFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD++++ PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILNVEYL 158 >gi|260464000|ref|ZP_05812195.1| transcription elongation factor GreA [Mesorhizobium opportunistum WSM2075] gi|259030171|gb|EEW31452.1| transcription elongation factor GreA [Mesorhizobium opportunistum WSM2075] Length = 158 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 108/158 (68%), Positives = 139/158 (87%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNE Sbjct: 1 MMNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ I RAEVID++ +SG+++ FGATV LV++++ +KK YQIVGDQEADV+SG + Sbjct: 61 GRVNELEDYIARAEVIDVTKLSGEKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 SISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 158 >gi|288957102|ref|YP_003447443.1| transcription elongation factor [Azospirillum sp. B510] gi|288909410|dbj|BAI70899.1| transcription elongation factor [Azospirillum sp. B510] Length = 157 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKVPMTAAGFNRLQEELKHLKITERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I+RAEVID + ++G + FGATV+L ++++ ++ YQIVG E+D+++ L+S Sbjct: 61 RVLELEDKISRAEVIDPAKLTGSTVKFGATVTLADQDTDEETTYQIVGQDESDIKNRLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARALI K +GD + V+ PGG K YEI+ V + Sbjct: 121 IQAPLARALINKSVGDSVEVSTPGGSKLYEIVSVEF 156 >gi|14041681|emb|CAC38777.1| GreA protein [Rhizobium tropici] Length = 158 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 108/157 (68%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRISELEDLTARAEVIDLTKMSGSKIKFGAKVKLVDEDTEEEKIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL + W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILSITW 157 >gi|311108151|ref|YP_003981004.1| transcription elongation factor GreA [Achromobacter xylosoxidans A8] gi|310762840|gb|ADP18289.1| transcription elongation factor GreA [Achromobacter xylosoxidans A8] Length = 232 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 75 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 134 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +ID + + R FGATV + + +SGD+ YQIVGD EAD++S L+ Sbjct: 135 RIAELEGTLSNAHLIDPTALEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 194 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 195 SVSSPVARALIGKSEGDVVEVVAPAGVREYEVLGVRYI 232 >gi|13472314|ref|NP_103881.1| transcription elongation factor GreA [Mesorhizobium loti MAFF303099] gi|25453003|sp|Q98I49|GREA_RHILO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|14023060|dbj|BAB49667.1| transcriptional elongation factor [Mesorhizobium loti MAFF303099] Length = 157 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 108/157 (68%), Positives = 139/157 (88%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAEVID++ +SGD++ FGATV LV++++ +KK YQIVGDQEADV+SG +S Sbjct: 61 RVNELEDLIARAEVIDVTKLSGDKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157 >gi|39937132|ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris CGA009] gi|192292967|ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris TIE-1] gi|81619506|sp|Q6N2H8|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229485904|sp|B3QJZ1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|39650990|emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris CGA009] gi|192286716|gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris TIE-1] Length = 158 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 87/157 (55%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEW 157 >gi|148259921|ref|YP_001234048.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5] gi|326403125|ref|YP_004283206.1| transcription elongation factor GreA [Acidiphilium multivorum AIU301] gi|166200647|sp|A5FWZ7|GREA_ACICJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146401602|gb|ABQ30129.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5] gi|325049986|dbj|BAJ80324.1| transcription elongation factor GreA [Acidiphilium multivorum AIU301] Length = 157 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 120/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G ++ ELR + EERP II+AI+EAR++GDLSENAEY +A+E Q+ EG Sbjct: 1 MQKFPMTGPGLQNLEAELRHLKSEERPAIIRAIAEARSHGDLSENAEYHSARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE II+ AEVID ST+SGD + FGA V L+++ S + YQIVG EAD+++G +S Sbjct: 61 RIAELEEIISAAEVIDPSTLSGDTVKFGAHVELIDEESDKEVTYQIVGVHEADIKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP+A++LIGK+ GD +SV APGG+++YEIL V + Sbjct: 121 VTSPLAKSLIGKKPGDTVSVPAPGGDRSYEILAVRF 156 >gi|118591047|ref|ZP_01548447.1| transcription elongation factor GreA [Stappia aggregata IAM 12614] gi|118436569|gb|EAV43210.1| transcription elongation factor GreA [Stappia aggregata IAM 12614] Length = 157 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 92/157 (58%), Positives = 128/157 (81%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS G+ +Q EL+ R ERPRI+ AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTSAGYKMLQDELKERTSVERPRIVDAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE+ ++RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD E+DV+ VS Sbjct: 61 RISELEDKLSRAEIIDVSKLSGDIVKFGATVTLIDEDTEEEKKYMIVGDVESDVKHNKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK +GD + V APGG ++YEI+ V +I Sbjct: 121 ISSPIARALIGKSIGDSVEVAAPGGARSYEIVDVRFI 157 >gi|260913960|ref|ZP_05920434.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC 43325] gi|260632047|gb|EEX50224.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC 43325] Length = 158 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAEQLRQELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ +VID++ M + ++ FGATV L+ ++ D+ +YQIVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLSNCQVIDVTKMPNNGKVIFGATVVLLNVDTDDEVSYQIVGDDEANIKDGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++++ PGG+ +EI++V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVAIQTPGGKVEFEIIEVNYV 158 >gi|170747000|ref|YP_001753260.1| transcription elongation factor GreA [Methylobacterium radiotolerans JCM 2831] gi|170653522|gb|ACB22577.1| transcription elongation factor GreA [Methylobacterium radiotolerans JCM 2831] Length = 179 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 96/155 (61%), Positives = 127/155 (81%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T +G +++EL+ RQQ ER RII+AI+EARA GDLSENAEY AAKE Q+ NEGR Sbjct: 23 DKVPITVRGLAALEEELKHRQQVERQRIIQAIAEARALGDLSENAEYHAAKEAQSHNEGR 82 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE++I RAEVID++ +SGDRI FGATV LV++++ ++K YQIVG+ EADV+SG VSI Sbjct: 83 VLELESMIARAEVIDVTKLSGDRIKFGATVKLVDEDTEEEKTYQIVGEPEADVRSGRVSI 142 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SPIARALIGK +GD + V PGG K+YE++ V + Sbjct: 143 TSPIARALIGKGVGDTVEVTTPGGGKSYEVVAVQY 177 >gi|329118200|ref|ZP_08246910.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC BAA-1200] gi|327465621|gb|EGF11896.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC BAA-1200] Length = 207 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 50 MKKIPLTIRGAELLKSELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 109 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A VI+ + + ++ FGAT+ L + +SG+ YQIVG+ EAD+++G + Sbjct: 110 RIAEIEHKLSHAHVINPAEIHAEGKVVFGATLDLEDLDSGEHVRYQIVGEDEADIKAGKI 169 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALIGKE GD+ V APGG + YEI+ V ++ Sbjct: 170 SVGSPIARALIGKEEGDVAEVQAPGGVREYEIVAVEYV 207 >gi|170741569|ref|YP_001770224.1| transcription elongation factor GreA [Methylobacterium sp. 4-46] gi|238688050|sp|B0U8M0|GREA_METS4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|168195843|gb|ACA17790.1| transcription elongation factor GreA [Methylobacterium sp. 4-46] Length = 158 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 93/157 (59%), Positives = 132/157 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G+ +++EL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG Sbjct: 1 MDKVPITIRGYAALEEELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I+RAE+ID+S +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RVLELESLISRAEIIDVSKLSGTKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SP+ARALIGK +GD + V PGG K+YEI+ + ++ Sbjct: 121 ITSPVARALIGKGVGDTVEVTTPGGGKSYEIVGIRYV 157 >gi|153008990|ref|YP_001370205.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC 49188] gi|189042242|sp|A6WZH2|GREA_OCHA4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151560878|gb|ABS14376.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC 49188] Length = 157 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAE+ID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEIIDVSKLSGDRIKFGATVTMIDEDTDEEKVYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157 >gi|149773197|dbj|BAF64773.1| transcription elongation factor [Shewanella livingstonensis] Length = 204 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 46 IMSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICE 105 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++E ++ A++ID++ + + R+ FG TV+++ ++ + Y+IVGD EAD++ L Sbjct: 106 ARIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNL 165 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +S+ PGG YEI++V ++ Sbjct: 166 ISVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 204 >gi|254293474|ref|YP_003059497.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814] gi|254042005|gb|ACT58800.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814] Length = 157 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 83/157 (52%), Positives = 120/157 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T++G ++ EL+ + RP +I+AI+ AR +GDLSENAEY AAKE Q+ EG Sbjct: 1 MQRIPMTAQGHQALEDELKHLKTVARPEVIQAIAVAREHGDLSENAEYHAAKESQSHIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL++ + RA+VID S +SGD I FGATV++V++++ ++ Y+IVG+ EA++ G +S Sbjct: 61 RIIELDSKLARAQVIDTSKLSGDNIKFGATVTVVDEDTEEEATYKIVGEDEANIADGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP+ARA+IGKE GDI V+APGG KTYEIL V WI Sbjct: 121 LSSPLARAMIGKEEGDIAEVSAPGGAKTYEILDVKWI 157 >gi|296116673|ref|ZP_06835283.1| transcription elongation factor GreA [Gluconacetobacter hansenii ATCC 23769] gi|295976885|gb|EFG83653.1| transcription elongation factor GreA [Gluconacetobacter hansenii ATCC 23769] Length = 157 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + YQIVG EAD++ GL+S Sbjct: 61 RILELEEIVSSAEVIDPASLSGDQVKFGARVHLVDEETDKEATYQIVGVYEADIKQGLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSP+A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 121 VSSPLAKSLIGKSVGDTVSVPAPGGDRTYEILAVTY 156 >gi|222149296|ref|YP_002550253.1| transcription elongation factor GreA [Agrobacterium vitis S4] gi|254799544|sp|B9JYZ7|GREA_AGRVS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221736280|gb|ACM37243.1| transcription elongation facto [Agrobacterium vitis S4] Length = 158 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 108/157 (68%), Positives = 134/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTQNGFSKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ELE++ RAEVID+S MSG +I FGATV L+++++ ++K YQIVGDQEADV++G + Sbjct: 61 GRVSELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDTDEEKIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARA+IGKE GD I V APGG K YEI+ V W Sbjct: 121 SISSPIARAMIGKEAGDSIEVVAPGGSKAYEIIAVNW 157 >gi|114321129|ref|YP_742812.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii MLHE-1] gi|122311293|sp|Q0A765|GREA_ALHEH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114227523|gb|ABI57322.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 83/157 (52%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T++G +K+++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKVPLTARGAEKLREELQRLKTVERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + ++ ++ FGATV LV+++SG + YQIVG+ EAD++ GLV Sbjct: 61 RIQEIEGKLSNAQVIDPAAVNAQGKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GD+++V APGGE+ YEI++V + Sbjct: 121 SVNSPIARALIGKEEGDLVTVQAPGGEREYEIVEVRY 157 >gi|319408896|emb|CBI82553.1| transcription elongation factor GreA [Bartonella schoenbuchensis R1] Length = 157 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 104/157 (66%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTTGFENLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGDRI FGAT+ L+ +++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGDRIKFGATIKLLNEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI+++ +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKIQYI 157 >gi|316935637|ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315603351|gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 158 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 87/157 (55%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157 >gi|163867955|ref|YP_001609159.1| transcription elongation factor GreA [Bartonella tribocorum CIP 105476] gi|189042236|sp|A9IRC3|GREA_BART1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|161017606|emb|CAK01164.1| transcription elongation factor GreA [Bartonella tribocorum CIP 105476] Length = 157 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 104/157 (66%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKIGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|83594219|ref|YP_427971.1| transcription elongation factor GreA [Rhodospirillum rubrum ATCC 11170] gi|123766955|sp|Q2RQB1|GREA_RHORT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|83577133|gb|ABC23684.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC 11170] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G +++ EL+ + +RP +I+AISEAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++ +RAEVIDIS +SGD + FGATVS+++++S ++ YQIVG EAD+++G +S Sbjct: 61 RIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEEQTTYQIVGAHEADLKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SPI +ALIGK++GD I V APGG K YE+ V + Sbjct: 121 VASPIGKALIGKKVGDSIEVKAPGGSKFYEVTMVRF 156 >gi|242240758|ref|YP_002988939.1| transcription elongation factor GreA [Dickeya dadantii Ech703] gi|242132815|gb|ACS87117.1| transcription elongation factor GreA [Dickeya dadantii Ech703] Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K++QEL + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLRQELEHLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ MS R+ FGATV+++ +S +++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMSATGRVIFGATVTVLNVDSDEEQTYRIVGDDEADIKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKETDDVVTISTPGGAVEYEILKVEYL 158 >gi|301156348|emb|CBW15819.1| transcription elongation factor [Haemophilus parainfluenzae T3T1] Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG +EI++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGTVEFEIIEVNYI 158 >gi|58038799|ref|YP_190763.1| transcription elongation factor GreA [Gluconobacter oxydans 621H] gi|58001213|gb|AAW60107.1| Transcription elongation factor [Gluconobacter oxydans 621H] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T+KG +++ ELR + +RP +I+AI+EAR +GDLSENAEY AA++ Q+ EG Sbjct: 1 MQKIPMTAKGQQRLEDELRTLKSVDRPAVIRAIAEAREHGDLSENAEYHAARDRQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II+ AEVID ST++G R+ FGA + LV++ + + YQIVG EAD++ GL+S Sbjct: 61 RVLELEGIISNAEVIDPSTLTGTRVRFGAHIELVDEETDKEALYQIVGVHEADIKQGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+A+ALIGK++GD +SV APGG++TYEIL+V + Sbjct: 121 ISSPLAKALIGKDVGDSVSVPAPGGDRTYEILKVTY 156 >gi|319781954|ref|YP_004141430.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167842|gb|ADV11380.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 157 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 109/157 (69%), Positives = 138/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SGD+I FGATV LV++++ +KK Y+IVGDQEADV+SG +S Sbjct: 61 RVNELEDYIARAEVIDVSKLSGDKIKFGATVVLVDEDTEEKKTYRIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157 >gi|300023325|ref|YP_003755936.1| transcription elongation factor GreA [Hyphomicrobium denitrificans ATCC 51888] gi|299525146|gb|ADJ23615.1| transcription elongation factor GreA [Hyphomicrobium denitrificans ATCC 51888] Length = 157 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 91/156 (58%), Positives = 120/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T +G+ ++ EL+ + ERPRII AISEARA+GDLSENAEY AAKE Q LNE Sbjct: 1 MERVPMTIEGYKNLETELQRLKAVERPRIIAAISEARAHGDLSENAEYHAAKEQQGLNEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ I RAEVID S +SGD + FGATV+L +++S DK Y IVGD EAD+++G +S Sbjct: 61 RVAELEDKINRAEVIDTSKLSGDTVKFGATVTLQDEDSEDKVTYTIVGDTEADLKNGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK G+ + V P G +T E+L+V W Sbjct: 121 ISSPIARALIGKTNGESVDVTTPKGTRTLEVLKVSW 156 >gi|227113764|ref|ZP_03827420.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 158 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M+ + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQDIEAKLSNAQVIDVTKMTANGRVIFGSTVTVMNLDNDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGDVEYEILKVEYL 158 >gi|325578454|ref|ZP_08148589.1| transcription elongation factor GreA [Haemophilus parainfluenzae ATCC 33392] gi|325160190|gb|EGC72319.1| transcription elongation factor GreA [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + ++QEL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLRQELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+ Sbjct: 61 RIQEIESKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKEL D +++ PGG +EI++V +I Sbjct: 121 SVNSPIARGLVGKELDDTVNITTPGGAVEFEIIEVNYI 158 >gi|312114890|ref|YP_004012486.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC 17100] gi|311220019|gb|ADP71387.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC 17100] Length = 159 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 91/158 (57%), Positives = 127/158 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+P+T++G ++ ELR + ER RIIKAI+EAR++GDLSENAEY AAKE Q +NE Sbjct: 1 MSEKVPMTAQGHAALEAELRILRSVERQRIIKAIAEARSHGDLSENAEYHAAKEAQGMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE+ ++RAEVIDIS +SG+ + FGATV+LV++++ ++ YQIVGD EADV++G V Sbjct: 61 AKVADLEDKLSRAEVIDISKLSGETVKFGATVTLVDEDTEEEVKYQIVGDLEADVRNGKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGK+ GD + VN P G K+YEIL+V ++ Sbjct: 121 SIGSPIARALIGKKAGDSVEVNTPRGAKSYEILKVEFL 158 >gi|296532781|ref|ZP_06895460.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC 49957] gi|296266889|gb|EFH12835.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC 49957] Length = 163 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V K P+T++G +++ ELR + EERP +I+AI+EARA+GDLSENAEY AA+E Q+ EG Sbjct: 7 VQKFPMTAEGLARLEDELRQLKAEERPAVIRAIAEARAHGDLSENAEYHAARERQSFIEG 66 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+I+ EVID + +SGD++ FGA V+++++ S ++K Y+IVG EAD + G +S Sbjct: 67 RIAELESIVPSVEVIDTTKLSGDQVRFGAYVTIIDEESEEEKTYRIVGAHEADTKLGSIS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+A+AL+GK+LGD + V APGG + YEI +V + Sbjct: 127 ISSPLAKALLGKKLGDSVEVPAPGGARAYEIAKVRF 162 >gi|113461143|ref|YP_719211.1| transcription elongation factor GreA [Haemophilus somnus 129PT] gi|170717727|ref|YP_001784798.1| transcription elongation factor GreA [Haemophilus somnus 2336] gi|112823186|gb|ABI25275.1| transcription elongation factor GreA [Haemophilus somnus 129PT] gi|168825856|gb|ACA31227.1| transcription elongation factor GreA [Haemophilus somnus 2336] Length = 158 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAISEAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPEIIKAISEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++ID++ + + ++ FGATV L+ ++ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLANCQIIDVTKLPNNGKVIFGATVVLLNIDTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK++ D + + PGG+ +EI++V + Sbjct: 121 SVNSPIARGLIGKDVDDTVVITTPGGKVEFEIVEVEY 157 >gi|225627946|ref|ZP_03785982.1| transcription elongation factor GreA [Brucella ceti str. Cudo] gi|225617109|gb|EEH14155.1| transcription elongation factor GreA [Brucella ceti str. Cudo] Length = 203 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 100/157 (63%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISS IARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 167 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203 >gi|251792645|ref|YP_003007371.1| transcription elongation factor GreA [Aggregatibacter aphrophilus NJ8700] gi|247534038|gb|ACS97284.1| transcription elongation factor GreA [Aggregatibacter aphrophilus NJ8700] Length = 158 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAELLRKELEYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++ID++ + + ++ FGATV+LV N+ D+ Y+IVGD EAD+++GL+ Sbjct: 61 RIQEIEGKLANCQIIDVTKIPNNGKVIFGATVTLVNTNTNDEVTYRIVGDDEADIKNGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGG +EI++V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVNITTPGGVVEFEIIEVEYV 158 >gi|270158808|ref|ZP_06187465.1| transcription elongation factor GreA domain protein [Legionella longbeachae D-4968] gi|289166397|ref|YP_003456535.1| transcription elongation factor GreA [Legionella longbeachae NSW150] gi|269990833|gb|EEZ97087.1| transcription elongation factor GreA domain protein [Legionella longbeachae D-4968] gi|288859570|emb|CBJ13538.1| transcription elongation factor GreA [Legionella longbeachae NSW150] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G + +++EL + +RPRI+ AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKYPMTVHGAEALKEELHRLKFVDRPRIVDAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG TV++ + + YQIVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVVFGCTVTICNVANETQLTYQIVGEDEADIKQNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPI R LIGKEL D ++VN PGG YEI+ V +I Sbjct: 121 SYSSPIGRGLIGKELDDSVTVNTPGGLVEYEIIDVQYI 158 >gi|240850162|ref|YP_002971555.1| transcription elongation factor GreA [Bartonella grahamii as4aup] gi|240267285|gb|ACS50873.1| transcription elongation factor GreA [Bartonella grahamii as4aup] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 103/157 (65%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID++ +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVTRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKVGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|217970148|ref|YP_002355382.1| transcription elongation factor GreA [Thauera sp. MZ1T] gi|217507475|gb|ACK54486.1| transcription elongation factor GreA [Thauera sp. MZ1T] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY+AAK+ Q EG Sbjct: 1 MNKTPLTVAGAEKLRTELHRLKTVERPNVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A++ID + + D R FGATV L + SG YQIVGD EAD++ + Sbjct: 61 RIMEVESKLANAQIIDPTLLDADGRCVFGATVELEDLESGQVVTYQIVGDDEADIKDNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GDI V APGG + YEIL V ++ Sbjct: 121 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVRYV 158 >gi|254719540|ref|ZP_05181351.1| transcription elongation factor GreA [Brucella sp. 83/13] gi|265984548|ref|ZP_06097283.1| transcription elongation factor grea [Brucella sp. 83/13] gi|306838479|ref|ZP_07471320.1| transcription elongation factor GreA [Brucella sp. NF 2653] gi|264663140|gb|EEZ33401.1| transcription elongation factor grea [Brucella sp. 83/13] gi|306406443|gb|EFM62681.1| transcription elongation factor GreA [Brucella sp. NF 2653] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQTERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|91784541|ref|YP_559747.1| transcription elongation factor GreA [Burkholderia xenovorans LB400] gi|91688495|gb|ABE31695.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 176 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 19 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 78 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+ Sbjct: 79 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 138 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 139 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 176 >gi|313673623|ref|YP_004051734.1| transcription elongation factor grea [Calditerrivibrio nitroreducens DSM 19672] gi|312940379|gb|ADR19571.1| transcription elongation factor GreA [Calditerrivibrio nitroreducens DSM 19672] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 83/155 (53%), Positives = 113/155 (72%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +GF+K+++EL + ER +I+AI EARA+GDLSENAEY AAKE Q L E Sbjct: 1 MDRIPITPEGFEKLKKELERLKTVERKEVIEAIKEARAHGDLSENAEYDAAKERQGLIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AELE+ I R EVID S SGD++ FG V + +G+KK Y+IVG EAD+ G +S Sbjct: 61 KIAELESKIGRFEVIDPSNFSGDKVVFGVYVEIENVETGEKKRYRIVGPDEADISKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + SPIA+AL+GK +GD + V APGG+K YEIL + Sbjct: 121 VISPIAKALMGKSVGDTVLVRAPGGDKEYEILDIS 155 >gi|260596192|ref|YP_003208763.1| transcription elongation factor GreA [Cronobacter turicensis z3032] gi|260215369|emb|CBA27383.1| Transcription elongation factor greA [Cronobacter turicensis z3032] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQPIPMTLRGAEKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKEL D++++N PGG+ +EI++V ++ Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158 >gi|325293542|ref|YP_004279406.1| transcription elongation factor GreA [Agrobacterium sp. H13-3] gi|325061395|gb|ADY65086.1| transcription elongation factor GreA [Agrobacterium sp. H13-3] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 109/157 (69%), Positives = 135/157 (85%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAEVID+S MSG +I FGATV L++++S +++ YQIVGDQEADV++G + Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEERIYQIVGDQEADVKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSPIARALIGKE+GD I VNAPGG K YEIL V W Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157 >gi|220924293|ref|YP_002499595.1| transcription elongation factor GreA [Methylobacterium nodulans ORS 2060] gi|254799562|sp|B8IBN8|GREA_METNO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219948900|gb|ACL59292.1| transcription elongation factor GreA [Methylobacterium nodulans ORS 2060] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 94/156 (60%), Positives = 132/156 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +GF ++QEL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPITIRGFAALEQELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I+RAEVID++ +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS Sbjct: 61 RVLELESLISRAEVIDVAKLSGSKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK +GD + V+ PGG K+YEI+ + + Sbjct: 121 ITSPVARALIGKGVGDTVEVSTPGGGKSYEIVGISF 156 >gi|239832384|ref|ZP_04680713.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG 3301] gi|239824651|gb|EEQ96219.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG 3301] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 102/157 (64%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLSGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157 >gi|330993911|ref|ZP_08317841.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1] gi|329758857|gb|EGG75371.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1] Length = 157 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + +YQIVG EAD++ GL+S Sbjct: 61 RIQELEEIVSSAEVIDPASLSGDQVKFGARVKLVDEETDREASYQIVGVYEADIKQGLLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+A++LIGK +GD +SV APGG++TYEIL+V + Sbjct: 121 ISSPLAKSLIGKSIGDTVSVPAPGGDRTYEILEVTY 156 >gi|167587476|ref|ZP_02379864.1| transcription elongation factor GreA [Burkholderia ubonensis Bu] Length = 158 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID S++ D R+ F ATV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPSSLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADLDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|158422770|ref|YP_001524062.1| transcription elongation factor GreA [Azorhizobium caulinodans ORS 571] gi|189042232|sp|A8HR94|GREA_AZOC5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|158329659|dbj|BAF87144.1| transcription elongation factor [Azorhizobium caulinodans ORS 571] Length = 157 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 96/156 (61%), Positives = 131/156 (83%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF +++ELR+RQQ ERPRII AISEARA+GDLSENAEY AAKELQ+LNEG Sbjct: 1 MEKIPMTGAGFVALEEELRFRQQVERPRIISAISEARAHGDLSENAEYHAAKELQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ I+RAEVID+S +SGD + FGATV+LV++++ +++ +QIVGD EAD ++G +S Sbjct: 61 RIAELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSP+ARALIGK+ G + V P G +++EI++V W Sbjct: 121 ISSPVARALIGKKKGSSVEVVTPKGARSFEIVEVRW 156 >gi|121602520|ref|YP_989263.1| transcription elongation factor GreA [Bartonella bacilliformis KC583] gi|189042235|sp|A1UTG0|GREA_BARBK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120614697|gb|ABM45298.1| transcription elongation factor GreA [Bartonella bacilliformis KC583] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 104/157 (66%), Positives = 135/157 (85%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFETLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVID+S +SG++I FGATV L+ +++ +KK YQIVGDQEADV+ G +S Sbjct: 61 RINELEDYIARAEVIDVSRLSGNQIKFGATVKLLNEDTEEKKVYQIVGDQEADVKIGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGKE GD+I VNAPGG YEI+++ +I Sbjct: 121 ISSPIARALIGKEEGDVIEVNAPGGAHNYEIIKIQYI 157 >gi|152979122|ref|YP_001344751.1| transcription elongation factor GreA [Actinobacillus succinogenes 130Z] gi|150840845|gb|ABR74816.1| transcription elongation factor GreA [Actinobacillus succinogenes 130Z] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++ID++ + + ++ FG+TV LV ++ D+ YQIVGD EAD+++GL+ Sbjct: 61 RIQEIESKLSNGQIIDVTKIPNNGKVIFGSTVVLVNVDTDDEATYQIVGDDEADIKAGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKEVDDTVNIVTPGGTVEFDIIEVNYI 158 >gi|49474490|ref|YP_032532.1| transcription elongation factor GreA [Bartonella quintana str. Toulouse] gi|81646921|sp|Q6FZ57|GREA_BARQU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|49239994|emb|CAF26408.1| Transcription elongation factor greA [Bartonella quintana str. Toulouse] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 104/157 (66%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|16127080|ref|NP_421644.1| transcription elongation factor GreA [Caulobacter crescentus CB15] gi|221235877|ref|YP_002518314.1| transcription elongation factor GreA [Caulobacter crescentus NA1000] gi|25453007|sp|Q9A4I3|GREA_CAUCR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799552|sp|B8H1V7|GREA_CAUCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13424460|gb|AAK24812.1| transcription elongation factor GreA [Caulobacter crescentus CB15] gi|220965050|gb|ACL96406.1| transcription elongation factor greA [Caulobacter crescentus NA1000] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 126/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ I RA+VID++ +SG ++ FGATVS+V++++ ++ YQIVGD EADV+SG +S Sbjct: 61 QIAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+G+++ VN PGG K YEIL+V W+ Sbjct: 121 LSSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157 >gi|163857848|ref|YP_001632146.1| hypothetical protein Bpet3535 [Bordetella petrii DSM 12804] gi|163261576|emb|CAP43878.1| greA [Bordetella petrii] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTARGAERLQAELHRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +ID + + D R FGATV + + +SGD+ +YQIVGD EAD++S L+ Sbjct: 61 RIAELEGTLSNAHIIDPAALDADGRAVFGATVDIEDLDSGDRLSYQIVGDVEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPSGVREYEVLGVRYI 158 >gi|17986791|ref|NP_539425.1| transcription elongation factor GreA [Brucella melitensis bv. 1 str. 16M] gi|23502373|ref|NP_698500.1| transcription elongation factor GreA [Brucella suis 1330] gi|62290393|ref|YP_222186.1| transcription elongation factor GreA [Brucella abortus bv. 1 str. 9-941] gi|82700315|ref|YP_414889.1| transcription elongation factor GreA [Brucella melitensis biovar Abortus 2308] gi|161619451|ref|YP_001593338.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|163843758|ref|YP_001628162.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|189024618|ref|YP_001935386.1| transcription elongation factor GreA [Brucella abortus S19] gi|225852983|ref|YP_002733216.1| transcription elongation factor GreA [Brucella melitensis ATCC 23457] gi|254689690|ref|ZP_05152944.1| transcription elongation factor GreA [Brucella abortus bv. 6 str. 870] gi|254694180|ref|ZP_05156008.1| transcription elongation factor GreA [Brucella abortus bv. 3 str. Tulya] gi|254697833|ref|ZP_05159661.1| transcription elongation factor GreA [Brucella abortus bv. 2 str. 86/8/59] gi|254702221|ref|ZP_05164049.1| transcription elongation factor GreA [Brucella suis bv. 5 str. 513] gi|254704756|ref|ZP_05166584.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686] gi|254730722|ref|ZP_05189300.1| transcription elongation factor GreA [Brucella abortus bv. 4 str. 292] gi|256045124|ref|ZP_05448025.1| transcription elongation factor GreA [Brucella melitensis bv. 1 str. Rev.1] gi|256061556|ref|ZP_05451698.1| transcription elongation factor GreA [Brucella neotomae 5K33] gi|256114061|ref|ZP_05454831.1| transcription elongation factor GreA [Brucella melitensis bv. 3 str. Ether] gi|256257941|ref|ZP_05463477.1| transcription elongation factor GreA [Brucella abortus bv. 9 str. C68] gi|256263538|ref|ZP_05466070.1| transcription elongation factor grea [Brucella melitensis bv. 2 str. 63/9] gi|256369920|ref|YP_003107431.1| transcription elongation factor GreA [Brucella microti CCM 4915] gi|260546930|ref|ZP_05822669.1| transcription elongation factor grea [Brucella abortus NCTC 8038] gi|260565274|ref|ZP_05835758.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|260565998|ref|ZP_05836468.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40] gi|260755224|ref|ZP_05867572.1| transcription elongation factor grea [Brucella abortus bv. 6 str. 870] gi|260758444|ref|ZP_05870792.1| transcription elongation factor grea [Brucella abortus bv. 4 str. 292] gi|260762270|ref|ZP_05874613.1| transcription elongation factor grea [Brucella abortus bv. 2 str. 86/8/59] gi|260884238|ref|ZP_05895852.1| transcription elongation factor grea [Brucella abortus bv. 9 str. C68] gi|261214487|ref|ZP_05928768.1| transcription elongation factor grea [Brucella abortus bv. 3 str. Tulya] gi|261325565|ref|ZP_05964762.1| transcription elongation factor grea [Brucella neotomae 5K33] gi|261752795|ref|ZP_05996504.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513] gi|261755454|ref|ZP_05999163.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686] gi|265991559|ref|ZP_06104116.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. Rev.1] gi|265995396|ref|ZP_06107953.1| transcription elongation factor grea [Brucella melitensis bv. 3 str. Ether] gi|294852821|ref|ZP_06793494.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026] gi|297248778|ref|ZP_06932496.1| transcription elongation factor greA [Brucella abortus bv. 5 str. B3196] gi|306843149|ref|ZP_07475769.1| transcription elongation factor GreA [Brucella sp. BO2] gi|306844505|ref|ZP_07477094.1| transcription elongation factor GreA [Brucella sp. BO1] gi|54037214|sp|P64272|GREA_BRUSU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041322|sp|P64271|GREA_BRUME RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|75496478|sp|Q57C09|GREA_BRUAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123768486|sp|Q2YRN8|GREA_BRUA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042237|sp|A9M6H1|GREA_BRUC2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042238|sp|B0CHU1|GREA_BRUSI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238689389|sp|B2S6W5|GREA_BRUA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799548|sp|C0REE0|GREA_BRUMB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|17982422|gb|AAL51689.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|23348356|gb|AAN30415.1| transcription elongation factor GreA [Brucella suis 1330] gi|62196525|gb|AAX74825.1| GreA, transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82616416|emb|CAJ11479.1| Prokaryotic transcription elongation factor GreA/GreB:Prokaryotic transcription elongation factor GreA [Brucella melitensis biovar Abortus 2308] gi|161336262|gb|ABX62567.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|163674481|gb|ABY38592.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|189020190|gb|ACD72912.1| transcription elongation factor GreA [Brucella abortus S19] gi|225641348|gb|ACO01262.1| transcription elongation factor GreA [Brucella melitensis ATCC 23457] gi|256000083|gb|ACU48482.1| transcription elongation factor GreA [Brucella microti CCM 4915] gi|260095980|gb|EEW79857.1| transcription elongation factor grea [Brucella abortus NCTC 8038] gi|260151342|gb|EEW86436.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. 16M] gi|260155516|gb|EEW90596.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40] gi|260668762|gb|EEX55702.1| transcription elongation factor grea [Brucella abortus bv. 4 str. 292] gi|260672702|gb|EEX59523.1| transcription elongation factor grea [Brucella abortus bv. 2 str. 86/8/59] gi|260675332|gb|EEX62153.1| transcription elongation factor grea [Brucella abortus bv. 6 str. 870] gi|260873766|gb|EEX80835.1| transcription elongation factor grea [Brucella abortus bv. 9 str. C68] gi|260916094|gb|EEX82955.1| transcription elongation factor grea [Brucella abortus bv. 3 str. Tulya] gi|261301545|gb|EEY05042.1| transcription elongation factor grea [Brucella neotomae 5K33] gi|261742548|gb|EEY30474.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513] gi|261745207|gb|EEY33133.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686] gi|262766509|gb|EEZ12298.1| transcription elongation factor grea [Brucella melitensis bv. 3 str. Ether] gi|263002343|gb|EEZ14918.1| transcription elongation factor grea [Brucella melitensis bv. 1 str. Rev.1] gi|263093566|gb|EEZ17591.1| transcription elongation factor grea [Brucella melitensis bv. 2 str. 63/9] gi|294821410|gb|EFG38409.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026] gi|297175947|gb|EFH35294.1| transcription elongation factor greA [Brucella abortus bv. 5 str. B3196] gi|306275116|gb|EFM56872.1| transcription elongation factor GreA [Brucella sp. BO1] gi|306286672|gb|EFM58230.1| transcription elongation factor GreA [Brucella sp. BO2] gi|326539229|gb|ADZ87444.1| transcription elongation factor GreA [Brucella melitensis M5-90] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|254470230|ref|ZP_05083634.1| transcription elongation factor GreA [Pseudovibrio sp. JE062] gi|211960541|gb|EEA95737.1| transcription elongation factor GreA [Pseudovibrio sp. JE062] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 125/156 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G+ + +EL+ R ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTPEGYAMLTEELKHRTTGERPRIIAAISEARAHGDLSENAEYHAAKEQQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID++ +SGD + FGATVSLV++++ ++K Y IVGD EADV+ G +S Sbjct: 61 RINELEGLLGLAEVIDLTKLSGDTVKFGATVSLVDEDTEEEKKYMIVGDVEADVKRGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK +GD + V APGG + YEI++V + Sbjct: 121 ISSPIARALIGKSVGDSVEVAAPGGARGYEIVEVEF 156 >gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040] gi|99035857|gb|ABF62715.1| transcription elongation factor GreA [Ruegeria sp. TM1040] Length = 156 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 80/156 (51%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID S +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVLSLADVIDPSKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG+++YEIL + + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILDITY 155 >gi|288940454|ref|YP_003442694.1| transcription elongation factor GreA [Allochromatium vinosum DSM 180] gi|288895826|gb|ADC61662.1| transcription elongation factor GreA [Allochromatium vinosum DSM 180] Length = 158 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+++EL ++ ERPRII+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTARGAEKLREELEQLKRVERPRIIEAIAEARAHGDLKENAEYHAAREQQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++TM + ++ FGATV ++E + ++ YQIVG+ EAD++ GL+ Sbjct: 61 RIKDIEGKLSHAQIIDVTTMPHNGKVIFGATVKVLELETDEEHCYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+AR LIGK GD+ S+ APGG + +EIL+V ++ Sbjct: 121 SVGSPLARCLIGKAEGDVASLQAPGGLREFEILEVQYV 158 >gi|261820118|ref|YP_003258224.1| transcription elongation factor GreA [Pectobacterium wasabiae WPP163] gi|261604131|gb|ACX86617.1| transcription elongation factor GreA [Pectobacterium wasabiae WPP163] Length = 159 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L Sbjct: 61 RIQDIEAKLSNAQVIDVTKMAANNGRVIFGATVTVMNLDNDEEQTYRIVGDDEADFKQNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159 >gi|251791044|ref|YP_003005765.1| transcription elongation factor GreA [Dickeya zeae Ech1591] gi|247539665|gb|ACT08286.1| transcription elongation factor GreA [Dickeya zeae Ech1591] Length = 158 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++N PGG YEIL+V+++ Sbjct: 121 SVNSPIARGLIGKEEDDVVTINTPGGMVEYEILKVVYL 158 >gi|254503831|ref|ZP_05115982.1| transcription elongation factor GreA subfamily [Labrenzia alexandrii DFL-11] gi|222439902|gb|EEE46581.1| transcription elongation factor GreA subfamily [Labrenzia alexandrii DFL-11] Length = 157 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 96/157 (61%), Positives = 129/157 (82%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS G+ +Q EL+ R ERPRI+ AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTSAGYTMLQSELKERTGVERPRIVDAISEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAE+ID+S +SGD + FGATVSLV++++ ++K Y IVGD E+DV+ VS Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGDVVKFGATVSLVDEDTEEEKKYMIVGDVESDVKQSKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK +GD + V APGG ++YEI++V +I Sbjct: 121 ISSPIARALIGKTVGDSVEVAAPGGARSYEIVEVQFI 157 >gi|156935703|ref|YP_001439619.1| transcription elongation factor GreA [Cronobacter sakazakii ATCC BAA-894] gi|156533957|gb|ABU78783.1| hypothetical protein ESA_03572 [Cronobacter sakazakii ATCC BAA-894] Length = 158 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQPIPMTLRGAEKLREELEFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEELTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKEL D++++N PGG+ +EI++V ++ Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158 >gi|319944199|ref|ZP_08018475.1| transcription elongation factor GreA [Lautropia mirabilis ATCC 51599] gi|319742494|gb|EFV94905.1| transcription elongation factor GreA [Lautropia mirabilis ATCC 51599] Length = 159 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T G ++ EL+ + ERP +I AI+EARA GDLSENAEY++AKE Q+ E Sbjct: 1 MATSFPLTKHGAQLLKDELQRLKSVERPNVINAIAEARAQGDLSENAEYESAKERQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AELE ++ A++ID + + D R+ FGATV L + +SGDK YQIVG+ EAD++ Sbjct: 61 GRIAELEGKLSAAQIIDPAALDADGRVVFGATVQLEDIDSGDKVTYQIVGEDEADLKLSK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S++SP+ARALIGK GD+ S APGGE+ YEIL VL+ Sbjct: 121 ISVASPLARALIGKYAGDVASFQAPGGEREYEILDVLY 158 >gi|16762061|ref|NP_457678.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766595|ref|NP_462210.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143550|ref|NP_806892.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415228|ref|YP_152303.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181807|ref|YP_218224.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616306|ref|YP_001590271.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552055|ref|ZP_02345808.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995305|ref|ZP_02576395.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231907|ref|ZP_02656965.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237998|ref|ZP_02663056.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243132|ref|ZP_02668064.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262691|ref|ZP_02684664.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463479|ref|ZP_02697396.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819635|ref|ZP_02831635.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442444|ref|YP_002042555.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451049|ref|YP_002047327.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472290|ref|ZP_03078274.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737942|ref|YP_002116247.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248717|ref|YP_002148223.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262177|ref|ZP_03162251.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364158|ref|YP_002143795.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244973|ref|YP_002217271.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388684|ref|ZP_03215296.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931178|ref|ZP_03221972.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354200|ref|YP_002228001.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858547|ref|YP_002245198.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213425423|ref|ZP_03358173.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646994|ref|ZP_03377047.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224585094|ref|YP_002638893.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910092|ref|ZP_04653929.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825810|ref|ZP_06544978.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037219|sp|P64282|GREA_SALTI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041329|sp|P64281|GREA_SALTY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25321438|pir||AB0903 transcription elongation factor STY3477 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421857|gb|AAL22169.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504364|emb|CAD07816.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29139185|gb|AAO70752.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129485|gb|AAV78991.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129440|gb|AAX67143.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365670|gb|ABX69438.1| hypothetical protein SPAB_04114 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401107|gb|ACF61329.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409353|gb|ACF69572.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458654|gb|EDX47493.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713444|gb|ACF92665.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633532|gb|EDX51946.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095635|emb|CAR61203.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212420|gb|ACH49817.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240432|gb|EDY23052.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289064|gb|EDY28433.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939489|gb|ACH76822.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605782|gb|EDZ04327.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319945|gb|EDZ05151.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273981|emb|CAR38987.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323254|gb|EDZ11093.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327000|gb|EDZ13764.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333717|gb|EDZ20481.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337869|gb|EDZ24633.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343382|gb|EDZ30146.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348488|gb|EDZ35119.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710350|emb|CAR34708.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469622|gb|ACN47452.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248464|emb|CBG26301.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995496|gb|ACY90381.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159848|emb|CBW19367.1| transcription elongation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914323|dbj|BAJ38297.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087743|emb|CBY97507.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225982|gb|EFX51036.1| Transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615302|gb|EFY12223.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618339|gb|EFY15230.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622856|gb|EFY19700.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626822|gb|EFY23619.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631391|gb|EFY28151.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635342|gb|EFY32056.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643341|gb|EFY39905.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647087|gb|EFY43588.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648890|gb|EFY45335.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655082|gb|EFY51393.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657685|gb|EFY53953.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664181|gb|EFY60379.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667464|gb|EFY63626.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674712|gb|EFY70804.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675655|gb|EFY71728.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682291|gb|EFY78314.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684894|gb|EFY80892.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716294|gb|EFZ07865.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131658|gb|ADX19088.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195901|gb|EFZ81072.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199018|gb|EFZ84115.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204282|gb|EFZ89291.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207629|gb|EFZ92576.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211318|gb|EFZ96162.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214740|gb|EFZ99489.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221220|gb|EGA05646.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224039|gb|EGA08332.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230312|gb|EGA14431.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233288|gb|EGA17382.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239325|gb|EGA23375.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242424|gb|EGA26450.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246934|gb|EGA30900.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254133|gb|EGA37953.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255250|gb|EGA39027.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262713|gb|EGA46269.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264023|gb|EGA47531.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269409|gb|EGA52864.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625049|gb|EGE31394.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629321|gb|EGE35664.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990156|gb|AEF09139.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 158 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158 >gi|258542082|ref|YP_003187515.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01] gi|256633160|dbj|BAH99135.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01] gi|256636217|dbj|BAI02186.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-03] gi|256639272|dbj|BAI05234.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-07] gi|256642326|dbj|BAI08281.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-22] gi|256645381|dbj|BAI11329.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-26] gi|256648436|dbj|BAI14377.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-32] gi|256651489|dbj|BAI17423.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654480|dbj|BAI20407.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO 3283-12] Length = 157 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157 >gi|319897099|ref|YP_004135294.1| transcription elongation factor [Haemophilus influenzae F3031] gi|317432603|emb|CBY80964.1| transcription elongation factor [Haemophilus influenzae F3031] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLRQELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A+VID++ M + ++ FG TV LV ++ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQVIDVTKMPNNGKVIFGTTVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|220934154|ref|YP_002513053.1| transcription elongation factor GreA [Thioalkalivibrio sp. HL-EbGR7] gi|254799576|sp|B8GNX7|GREA_THISH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219995464|gb|ACL72066.1| transcription elongation factor GreA [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 120/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G +K++ EL+ + E+RPR+I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MSKTPLTVAGANKLKAELQKLKSEDRPRVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID++T++ G ++ FGATV L ++ +G + YQIVGD EAD++ G + Sbjct: 61 RIKEIEAKLSNAQIIDVTTLNAGGKVVFGATVDLSDEETGKEVTYQIVGDDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD+++V APGG+K YEI+ V +I Sbjct: 121 SVNSPIARALIGKEEGDVVTVKAPGGDKDYEIVAVKYI 158 >gi|159045616|ref|YP_001534410.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL 12] gi|157913376|gb|ABV94809.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL 12] Length = 171 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 16 MEKIPMTRRGHSALDTELKQLKSVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++RA+VID +T+SG + FGATV++V++++ ++K YQIVG+ EAD++ GL++ Sbjct: 76 RVKELEALLSRAQVIDPATLSG-AVKFGATVTIVDEDTDEEKTYQIVGEAEADIEKGLLN 134 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG K+YEIL++ + Sbjct: 135 LKSPIARALIGKEEGDSVEVRTPGGTKSYEILEIAY 170 >gi|329848667|ref|ZP_08263695.1| transcription elongation factor greA [Asticcacaulis biprosthecum C19] gi|328843730|gb|EGF93299.1| transcription elongation factor greA [Asticcacaulis biprosthecum C19] Length = 157 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 124/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G+ + EL+ + ERP +I AISEAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTVGGYKSLDDELKRLKSIERPAVIAAISEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A++E+ I+RA+VID++ +SG I FGATV++V++++ ++ YQ+VGD EADV+SG +S Sbjct: 61 QIADIEDKISRAQVIDVTKLSGQNIKFGATVTVVDEDTEEEGRYQVVGDHEADVRSGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+GD++ V PGG K YEIL+V WI Sbjct: 121 LSSPLSRAMIGKEVGDVVEVVTPGGVKAYEILKVEWI 157 >gi|186475640|ref|YP_001857110.1| transcription elongation factor GreA [Burkholderia phymatum STM815] gi|184192099|gb|ACC70064.1| transcription elongation factor GreA [Burkholderia phymatum STM815] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A++ID S + D R+ F ATV L + +SGD YQIVGD EAD++ GL+ Sbjct: 61 RIAEIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158 >gi|197106054|ref|YP_002131431.1| transcription elongation factor GreA [Phenylobacterium zucineum HLK1] gi|238690169|sp|B4RH54|GREA_PHEZH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|196479474|gb|ACG79002.1| transcription elongation factor GreA [Phenylobacterium zucineum HLK1] Length = 157 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 127/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYKALDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ + RA+VID+S +SG+++ FGATVSL+++++ ++ YQIVG+ EADV++G VS Sbjct: 61 QIAEIEDKMARAQVIDVSKLSGEQVKFGATVSLIDEDTEEEARYQIVGEHEADVKAGRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARA+IGKE GD++ VN PGG K YEI +V W+ Sbjct: 121 VTSPIARAIIGKETGDVVEVNTPGGVKAYEITKVEWV 157 >gi|206889798|ref|YP_002248384.1| transcription elongation factor GreA [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058240|sp|B5YJG9|GREA_THEYD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|206741736|gb|ACI20793.1| transcription elongation factor GreA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 158 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 118/157 (75%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+IP+T +G++K+++EL + ERP IIKAI+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MTDRIPMTPEGYEKLKEELDRLIKIERPAIIKAIAEARAHGDLSENAEYHAAREKQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA VID S ++ +++AFGA V +++ ++ ++K + +VG EADV++G + Sbjct: 61 GRIQELQAKLARAYVIDPSKINQNKVAFGAKVRVIDIDTEEEKEFHLVGPDEADVKNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ +ALIGKE+G+ +++ AP YEI+ + + Sbjct: 121 SITSPVGKALIGKEVGEQVTIKAPAKTFNYEIISISF 157 >gi|85715963|ref|ZP_01046940.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A] gi|85697161|gb|EAQ35042.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A] Length = 158 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 122/158 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MVDK+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVDKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIMFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SP+ARALIGK+ G + V APGG K YEI +V W+ Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEWL 158 >gi|261345170|ref|ZP_05972814.1| transcription elongation factor GreA [Providencia rustigianii DSM 4541] gi|282566862|gb|EFB72397.1| transcription elongation factor GreA [Providencia rustigianii DSM 4541] Length = 158 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVFGANKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++VIDI+ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIESKLSHSQVIDITKMVNNGRVIFGATVTVLNLDTDEELTYRIVGDDEADIKVNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D++++ PGG+ +EIL+V +I Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158 >gi|254418720|ref|ZP_05032444.1| transcription elongation factor GreA subfamily [Brevundimonas sp. BAL3] gi|196184897|gb|EDX79873.1| transcription elongation factor GreA subfamily [Brevundimonas sp. BAL3] Length = 157 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 124/156 (79%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAEGYRVLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ I+RA+VID+S +SG ++ FGATV++V++++ D+ YQIVG+ EADV+ G VS Sbjct: 61 QIAEIEDKISRAQVIDVSKLSGSQVKFGATVTVVDEDTEDEARYQIVGEHEADVKKGKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARA+I KE+GD++ VN PGG K YEIL+V W Sbjct: 121 IASPIARAMISKEVGDVVEVNTPGGVKAYEILKVEW 156 >gi|94676760|ref|YP_589063.1| transcription elongation factor GreA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384107|sp|Q1LSK1|GREA_BAUCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|94219910|gb|ABF14069.1| transcription elongation factor GreA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 158 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + + RP II+ I+EAR YGDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEQLREELNYLKNVRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + ++ FG TVS+ N +++ Y+IVGD EA+ + L+ Sbjct: 61 RIQEIESKLSHAQIIDVTKLFPSGKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK+ GDI+ + P GE Y+IL++ ++ Sbjct: 121 SISSPIARGLIGKKKGDIVLIKTPRGEVKYQILKIEYL 158 >gi|37528357|ref|NP_931702.1| transcription elongation factor GreA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787795|emb|CAE16910.1| transcription elongation factor greA (transcript cleavage factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 158 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M G R+ FG TV+++ N+ +++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPKGGRVIFGTTVTVLNVNTDEEQTYRIVGDDEADIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL+V +I Sbjct: 121 SVNSPIARGLIGKEVDDVVIIKTPGGEVEYEILKVEYI 158 >gi|83719378|ref|YP_443292.1| transcription elongation factor GreA [Burkholderia thailandensis E264] gi|167582309|ref|ZP_02375183.1| transcription elongation factor GreA [Burkholderia thailandensis TXDOH] gi|167620406|ref|ZP_02389037.1| transcription elongation factor GreA [Burkholderia thailandensis Bt4] gi|257139528|ref|ZP_05587790.1| transcription elongation factor GreA [Burkholderia thailandensis E264] gi|83653203|gb|ABC37266.1| transcription elongation factor GreA [Burkholderia thailandensis E264] Length = 158 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|254468129|ref|ZP_05081535.1| GreA/GreB family elongation factor [beta proteobacterium KB13] gi|207086939|gb|EDZ64222.1| GreA/GreB family elongation factor [beta proteobacterium KB13] Length = 159 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 115/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +IP+T G +++++EL + ++RP II+AI+EARA GDLSENAEY++AKE Q E Sbjct: 1 MAGQIPMTRNGVERLKEELHQLKSQDRPNIIQAIAEARAQGDLSENAEYESAKERQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E ++ ++ID S ++ D + FGAT+ L + + YQIVG+ EAD+++ Sbjct: 61 GRIAEIEAKLSNVQIIDPSVLNADGKCVFGATIELEDLDEEKSFTYQIVGEDEADIKANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP+ARALIGKE GD++ V PGG+KTYEI V +I Sbjct: 121 ISISSPLARALIGKEDGDVVEVETPGGQKTYEITNVSYI 159 >gi|56695227|ref|YP_165575.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3] gi|81350946|sp|Q5LXA4|GREA_SILPO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56676964|gb|AAV93630.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3] Length = 156 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPSGFAALEAELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGARVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K+YEIL + + Sbjct: 120 IKSPIARALIGKDEGDSVEVKTPGGQKSYEILSIEY 155 >gi|315634153|ref|ZP_07889442.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC 33393] gi|315477403|gb|EFU68146.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC 33393] Length = 158 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++VID++ + + ++ FGATV L N+ ++ Y+IVGD EAD+++GL+ Sbjct: 61 RIQEIEGKLGNSQVIDVTKIPNNGKVIFGATVVLFNTNTDEEVTYRIVGDDEADIKNGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D++++ PGG +EI++V ++ Sbjct: 121 SVNSPIARGLVGKEVDDVVNITTPGGVVEFEIIEVEYV 158 >gi|49475893|ref|YP_033934.1| transcription elongation factor GreA [Bartonella henselae str. Houston-1] gi|81647735|sp|Q6G2M7|GREA_BARHE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|49238701|emb|CAF27953.1| Transcription elongation factor greA [Bartonella henselae str. Houston-1] Length = 157 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 103/157 (65%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLS NAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQEERPRIIEAISEARAHGDLSGNAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIEVQYI 157 >gi|16273242|ref|NP_439483.1| transcription elongation factor GreA [Haemophilus influenzae Rd KW20] gi|260581322|ref|ZP_05849138.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] gi|1170015|sp|P43881|GREA_HAEIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd KW20] gi|260091989|gb|EEW75936.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] Length = 158 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID+S M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|71906579|ref|YP_284166.1| transcription elongation factor GreA [Dechloromonas aromatica RCB] gi|71846200|gb|AAZ45696.1| GreA/GreB family elongation factor [Dechloromonas aromatica RCB] Length = 172 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +K+++EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 15 MSKVPLTVAGAEKLREELHRLKTVDRPWVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 74 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + D R FGATV + +++SG YQIVG+ EAD+++G + Sbjct: 75 RIQEVEGKLSNAQIIDPKLLDADGRCVFGATVQMEDQDSGAGATYQIVGEDEADIKAGKI 134 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SP+ARALIGK GDI V APGG + YEI+ V + Sbjct: 135 SVNSPMARALIGKYAGDIAQVQAPGGIREYEIIDVRY 171 >gi|283788181|ref|YP_003368046.1| transcription elongation factor [Citrobacter rodentium ICC168] gi|282951635|emb|CBG91335.1| transcription elongation factor [Citrobacter rodentium ICC168] Length = 158 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPLTLRGAEKLREELDFLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ ++IVGD EAD + L+ Sbjct: 61 RINDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDSDEEQTWRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE YEI +V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEITKVEYL 158 >gi|253686964|ref|YP_003016154.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753542|gb|ACT11618.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 158 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQDIEAKLSNAQVIDVTKMTANGRVIFGATVTVMNLDNEEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIRTPGGDVEYEILKVEYL 158 >gi|329114165|ref|ZP_08242927.1| Transcription elongation factor GreA [Acetobacter pomorum DM001] gi|326696241|gb|EGE47920.1| Transcription elongation factor GreA [Acetobacter pomorum DM001] Length = 157 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKAEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157 >gi|254197614|ref|ZP_04904036.1| transcription elongation factor GreA [Burkholderia pseudomallei S13] gi|169654355|gb|EDS87048.1| transcription elongation factor GreA [Burkholderia pseudomallei S13] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP II AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAIINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158 >gi|56460087|ref|YP_155368.1| transcription elongation factor GreA [Idiomarina loihiensis L2TR] gi|56179097|gb|AAV81819.1| Transcription elongation factor GreA [Idiomarina loihiensis L2TR] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G ++ EL+ + ERPRI++AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ Y+IVGD EAD++S L+ Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYKIVGDDEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE+ DI +V P GE YE++ V + Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVAVQY 157 >gi|183600357|ref|ZP_02961850.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827] gi|188020148|gb|EDU58188.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVLGADKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VID++ M+ + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIESKLSHAQVIDVTKMTNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGG+ +EIL+V +I Sbjct: 121 SVNSPIARGLIGKEQDDVVTIKTPGGDVEFEILKVEYI 158 >gi|157148750|ref|YP_001456069.1| transcription elongation factor GreA [Citrobacter koseri ATCC BAA-895] gi|157085955|gb|ABV15633.1| hypothetical protein CKO_04582 [Citrobacter koseri ATCC BAA-895] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE D++++ PGGE YE+++V ++ Sbjct: 121 SVNSPIARGLVGKEQDDVVTIKTPGGEVEYEVIKVEYL 158 >gi|161506138|ref|YP_001573250.1| transcription elongation factor GreA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867485|gb|ABX24108.1| hypothetical protein SARI_04326 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMANNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158 >gi|259415108|ref|ZP_05739030.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B] gi|259349018|gb|EEW60772.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B] Length = 156 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG++ YEIL++++ Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155 >gi|53718991|ref|YP_107977.1| transcription elongation factor GreA [Burkholderia pseudomallei K96243] gi|53725562|ref|YP_102536.1| transcription elongation factor GreA [Burkholderia mallei ATCC 23344] gi|67639733|ref|ZP_00438570.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse 4] gi|76811771|ref|YP_333015.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710b] gi|121601156|ref|YP_992619.1| transcription elongation factor GreA [Burkholderia mallei SAVP1] gi|124384628|ref|YP_001026579.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10229] gi|126439860|ref|YP_001058521.1| transcription elongation factor GreA [Burkholderia pseudomallei 668] gi|126448841|ref|YP_001080136.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10247] gi|126451730|ref|YP_001065781.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106a] gi|134282748|ref|ZP_01769451.1| transcription elongation factor GreA [Burkholderia pseudomallei 305] gi|167002793|ref|ZP_02268583.1| transcription elongation factor GreA [Burkholderia mallei PRL-20] gi|167719061|ref|ZP_02402297.1| transcription elongation factor GreA [Burkholderia pseudomallei DM98] gi|167738059|ref|ZP_02410833.1| transcription elongation factor GreA [Burkholderia pseudomallei 14] gi|167815243|ref|ZP_02446923.1| transcription elongation factor GreA [Burkholderia pseudomallei 91] gi|167823652|ref|ZP_02455123.1| transcription elongation factor GreA [Burkholderia pseudomallei 9] gi|167845196|ref|ZP_02470704.1| transcription elongation factor GreA [Burkholderia pseudomallei B7210] gi|167893747|ref|ZP_02481149.1| transcription elongation factor GreA [Burkholderia pseudomallei 7894] gi|167902197|ref|ZP_02489402.1| transcription elongation factor GreA [Burkholderia pseudomallei NCTC 13177] gi|167910439|ref|ZP_02497530.1| transcription elongation factor GreA [Burkholderia pseudomallei 112] gi|167918464|ref|ZP_02505555.1| transcription elongation factor GreA [Burkholderia pseudomallei BCC215] gi|217423500|ref|ZP_03455001.1| transcription elongation factor GreA [Burkholderia pseudomallei 576] gi|226196142|ref|ZP_03791727.1| transcription elongation factor GreA [Burkholderia pseudomallei Pakistan 9] gi|237811774|ref|YP_002896225.1| transcription elongation factor GreA [Burkholderia pseudomallei MSHR346] gi|242317287|ref|ZP_04816303.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106b] gi|254177940|ref|ZP_04884595.1| transcription elongation factor GreA [Burkholderia mallei ATCC 10399] gi|254180206|ref|ZP_04886805.1| transcription elongation factor GreA [Burkholderia pseudomallei 1655] gi|254188375|ref|ZP_04894886.1| transcription elongation factor GreA [Burkholderia pseudomallei Pasteur 52237] gi|254199447|ref|ZP_04905813.1| transcription elongation factor GreA [Burkholderia mallei FMH] gi|254205760|ref|ZP_04912112.1| transcription elongation factor GreA [Burkholderia mallei JHU] gi|254259727|ref|ZP_04950781.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710a] gi|254298040|ref|ZP_04965493.1| transcription elongation factor GreA [Burkholderia pseudomallei 406e] gi|254358839|ref|ZP_04975112.1| transcription elongation factor GreA [Burkholderia mallei 2002721280] gi|52209405|emb|CAH35350.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52428985|gb|AAU49578.1| transcription elongation factor GreA [Burkholderia mallei ATCC 23344] gi|76581224|gb|ABA50699.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710b] gi|121229966|gb|ABM52484.1| transcription elongation factor GreA [Burkholderia mallei SAVP1] gi|124292648|gb|ABN01917.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10229] gi|126219353|gb|ABN82859.1| transcription elongation factor GreA [Burkholderia pseudomallei 668] gi|126225372|gb|ABN88912.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106a] gi|126241711|gb|ABO04804.1| transcription elongation factor GreA [Burkholderia mallei NCTC 10247] gi|134245834|gb|EBA45925.1| transcription elongation factor GreA [Burkholderia pseudomallei 305] gi|147749043|gb|EDK56117.1| transcription elongation factor GreA [Burkholderia mallei FMH] gi|147753203|gb|EDK60268.1| transcription elongation factor GreA [Burkholderia mallei JHU] gi|148027966|gb|EDK85987.1| transcription elongation factor GreA [Burkholderia mallei 2002721280] gi|157807730|gb|EDO84900.1| transcription elongation factor GreA [Burkholderia pseudomallei 406e] gi|157936054|gb|EDO91724.1| transcription elongation factor GreA [Burkholderia pseudomallei Pasteur 52237] gi|160698979|gb|EDP88949.1| transcription elongation factor GreA [Burkholderia mallei ATCC 10399] gi|184210746|gb|EDU07789.1| transcription elongation factor GreA [Burkholderia pseudomallei 1655] gi|217393358|gb|EEC33379.1| transcription elongation factor GreA [Burkholderia pseudomallei 576] gi|225931728|gb|EEH27730.1| transcription elongation factor GreA [Burkholderia pseudomallei Pakistan 9] gi|237503724|gb|ACQ96042.1| transcription elongation factor GreA [Burkholderia pseudomallei MSHR346] gi|238520332|gb|EEP83793.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse 4] gi|242140526|gb|EES26928.1| transcription elongation factor GreA [Burkholderia pseudomallei 1106b] gi|243061554|gb|EES43740.1| transcription elongation factor GreA [Burkholderia mallei PRL-20] gi|254218416|gb|EET07800.1| transcription elongation factor GreA [Burkholderia pseudomallei 1710a] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158 >gi|260431555|ref|ZP_05785526.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis ITI-1157] gi|260415383|gb|EEX08642.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis ITI-1157] Length = 156 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 78/156 (50%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG Sbjct: 1 MEKIPMTPAGFAALEAELKQLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEVID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVLSLAEVIDPTKLSG-AIKFGAKVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG ++YE+L + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIHY 155 >gi|296104892|ref|YP_003615038.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059351|gb|ADF64089.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGGE YEI++V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158 >gi|229845154|ref|ZP_04465289.1| transcription elongation factor GreA [Haemophilus influenzae 6P18H1] gi|229811990|gb|EEP47684.1| transcription elongation factor GreA [Haemophilus influenzae 6P18H1] Length = 158 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|160900362|ref|YP_001565944.1| transcription elongation factor GreA [Delftia acidovorans SPH-1] gi|160365946|gb|ABX37559.1| transcription elongation factor GreA [Delftia acidovorans SPH-1] Length = 158 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 120/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL + ERP II+AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID S++ G R+ FGATV L +++SGD YQIVG+ EAD++ GL+ Sbjct: 61 RIAEVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SSPIARALIGKE GD V APGGE+ YE++ V ++ Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL 158 >gi|295097667|emb|CBK86757.1| transcription elongation factor GreA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 158 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDNDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGGE YEI++V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158 >gi|311277845|ref|YP_003940076.1| transcription elongation factor GreA [Enterobacter cloacae SCF1] gi|308747040|gb|ADO46792.1| transcription elongation factor GreA [Enterobacter cloacae SCF1] Length = 158 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGADKLREELEYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDIS M + R+ FG+TV+++ +S ++++Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDISKMPNNGRVIFGSTVTVLNLDSDEEQSYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE D++++ PGGE YEI++V ++ Sbjct: 121 SVNSPIARGLVGKEQDDVVTIRTPGGEVEYEIVKVDYL 158 >gi|146338409|ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS278] gi|146191215|emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Bradyrhizobium sp. ORS278] Length = 188 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 87/157 (55%), Positives = 126/157 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 31 MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID++ +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 91 GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK++G + V APGG K+YEI +V W Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 187 >gi|307730495|ref|YP_003907719.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307585030|gb|ADN58428.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 158 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID S + D R+ FGATV L + +SG YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|68250001|ref|YP_249113.1| transcription elongation factor GreA [Haemophilus influenzae 86-028NP] gi|145629417|ref|ZP_01785215.1| transcription elongation factor GreA [Haemophilus influenzae 22.1-21] gi|145630776|ref|ZP_01786554.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145634950|ref|ZP_01790657.1| transcription elongation factor GreA [Haemophilus influenzae PittAA] gi|145636182|ref|ZP_01791852.1| transcription elongation factor GreA [Haemophilus influenzae PittHH] gi|145638911|ref|ZP_01794519.1| transcription elongation factor GreA [Haemophilus influenzae PittII] gi|148826011|ref|YP_001290764.1| transcription elongation factor GreA [Haemophilus influenzae PittEE] gi|148826969|ref|YP_001291722.1| transcription elongation factor GreA [Haemophilus influenzae PittGG] gi|229847491|ref|ZP_04467588.1| transcription elongation factor GreA [Haemophilus influenzae 7P49H1] gi|260582445|ref|ZP_05850236.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|319776271|ref|YP_004138759.1| transcription elongation factor [Haemophilus influenzae F3047] gi|68058200|gb|AAX88453.1| transcription elongation factor GreA [Haemophilus influenzae 86-028NP] gi|144978260|gb|EDJ88024.1| transcription elongation factor GreA [Haemophilus influenzae 22.1-21] gi|144983658|gb|EDJ91118.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145267816|gb|EDK07813.1| transcription elongation factor GreA [Haemophilus influenzae PittAA] gi|145270704|gb|EDK10637.1| transcription elongation factor GreA [Haemophilus influenzae PittHH] gi|145271883|gb|EDK11792.1| transcription elongation factor GreA [Haemophilus influenzae PittII] gi|148716171|gb|ABQ98381.1| transcription elongation factor GreA [Haemophilus influenzae PittEE] gi|148718211|gb|ABQ99338.1| transcription elongation factor GreA [Haemophilus influenzae PittGG] gi|229809632|gb|EEP45359.1| transcription elongation factor GreA [Haemophilus influenzae 7P49H1] gi|260094425|gb|EEW78322.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|309750885|gb|ADO80869.1| Transcription elongation factor GreA [Haemophilus influenzae R2866] gi|309973148|gb|ADO96349.1| Transcription elongation factor GreA [Haemophilus influenzae R2846] gi|317450862|emb|CBY87086.1| transcription elongation factor [Haemophilus influenzae F3047] Length = 158 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|224372408|ref|YP_002606780.1| transcription elongation factor GreA [Nautilia profundicola AmH] gi|254799565|sp|B9L822|GREA_NAUPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|223589756|gb|ACM93492.1| transcription elongation factor grea transcript cleavage factorgrea [Nautilia profundicola AmH] Length = 162 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q+ E Sbjct: 1 MHKEPMTKYGYEKLSKELEYLKTTARPEVAKEIDSARELGDLKENAEYHAAKEKQSHIER 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +I++RA V+D + +R+AFG+TV L++ ++ +K+ Y IVG EA+ GL+S Sbjct: 61 RIAELSDILSRAVVVDPKEHAHNRVAFGSTVYLIDVDTDEKEKYTIVGAPEANPDKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIGKE+GD + VN PGG K YEI ++ + Sbjct: 121 YHSPLAKALIGKEVGDEVEVNLPGGVKVYEIDKICY 156 >gi|271499165|ref|YP_003332190.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] gi|270342720|gb|ACZ75485.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] Length = 158 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FGA V+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGAMVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVTISTPGGVVEYEILKVEYL 158 >gi|188580289|ref|YP_001923734.1| transcription elongation factor GreA [Methylobacterium populi BJ001] gi|179343787|gb|ACB79199.1| transcription elongation factor GreA [Methylobacterium populi BJ001] Length = 160 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 95/155 (61%), Positives = 126/155 (81%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR Sbjct: 4 DKLPITARGYAALEEELKQRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI Sbjct: 64 VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIARALIGK +GD + V PGG K+YE++ V W Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158 >gi|319898512|ref|YP_004158605.1| transcription elongation factor GreA [Bartonella clarridgeiae 73] gi|319402476|emb|CBI76019.1| transcription elongation factor GreA [Bartonella clarridgeiae 73] Length = 157 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 102/157 (64%), Positives = 138/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGDRI FGAT++L+++ + ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG + YEI+++ +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI 157 >gi|52425016|ref|YP_088153.1| transcription elongation factor GreA [Mannheimia succiniciproducens MBEL55E] gi|52307068|gb|AAU37568.1| GreA protein [Mannheimia succiniciproducens MBEL55E] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + ++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLKQELDFLKTTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++ID++ + + ++ FGATV LV + D+ YQIVGD EAD++SGL+ Sbjct: 61 RIQEIESKLSNCQIIDVTKLPNNGKVIFGATVVLVNTENDDEVTYQIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ + +S+ PGG+ ++I++V +I Sbjct: 121 SVNSPIARGLIGKEVDETVSIVVPGGKVEFDIIEVNYI 158 >gi|152972105|ref|YP_001337251.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896688|ref|YP_002921433.1| transcription elongation factor GreA [Klebsiella pneumoniae NTUH-K2044] gi|262042740|ref|ZP_06015894.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997717|ref|ZP_08302900.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3] gi|150956954|gb|ABR78984.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549015|dbj|BAH65366.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039965|gb|EEW41082.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538926|gb|EGF64984.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGGE YEI +V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158 >gi|167648248|ref|YP_001685911.1| transcription elongation factor GreA [Caulobacter sp. K31] gi|189042240|sp|B0SZ84|GREA_CAUSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167350678|gb|ABZ73413.1| transcription elongation factor GreA [Caulobacter sp. K31] Length = 157 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 124/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MEKVPMTAGGYQTLDEELKRLKTIERPAVIAAISEARQHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+E+ I RA+VID+S +SG ++ FGATVS+V++++ ++ YQIVGD EADV+ G +S Sbjct: 61 RIAEIEDKIARAQVIDVSKLSGKQVKFGATVSVVDEDTEEESRYQIVGDHEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SSP++RA+IGKE+G+++ V PGG K YEIL+V W+ Sbjct: 121 LSSPLSRAMIGKEVGEVVEVYTPGGVKAYEILKVEWV 157 >gi|253991511|ref|YP_003042867.1| transcription elongation factor GreA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638389|emb|CAR67011.1| transcription elongation factor grea (transcript cleavage facto grea) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782961|emb|CAQ86126.1| transcription elongation factor grea (transcript cleavage facto grea) [Photorhabdus asymbiotica] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+ + N+ +++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPKTGRVIFGATVTALNVNTDEEQTYRIVGDDEADIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ DI+++ PGGE YEIL+V +I Sbjct: 121 SVNSPIARGLIGKEVDDIVTIKTPGGEVEYEILKVEYI 158 >gi|149194430|ref|ZP_01871527.1| transcription elongation factor GreA [Caminibacter mediatlanticus TB-2] gi|149135605|gb|EDM24084.1| transcription elongation factor GreA [Caminibacter mediatlanticus TB-2] Length = 162 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 103/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMTKYGYEKLSKELEYLKTVARPEVAKEIDAARELGDLKENAEYHAAKEKQAHIERRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL +I++RA V+D + DR++FG+TV LV+ +S ++ Y IVG EAD GL+S + Sbjct: 62 AELSDILSRAVVVDPKEHAHDRVSFGSTVYLVDLDSDEEFKYTIVGAPEADPDKGLISYN 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALIGK +GD + VN P G K YEI ++ + Sbjct: 122 SPLAKALIGKHVGDEVEVNLPSGTKYYEIEKICF 155 >gi|237730101|ref|ZP_04560582.1| transcription elongation factor GreA [Citrobacter sp. 30_2] gi|283836273|ref|ZP_06356014.1| transcription elongation factor GreA [Citrobacter youngae ATCC 29220] gi|226908707|gb|EEH94625.1| transcription elongation factor GreA [Citrobacter sp. 30_2] gi|291067636|gb|EFE05745.1| transcription elongation factor GreA [Citrobacter youngae ATCC 29220] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE YE+ +V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL 158 >gi|301170078|emb|CBW29682.1| transcription elongation factor [Haemophilus influenzae 10810] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEAKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|206577730|ref|YP_002236407.1| transcription elongation factor GreA [Klebsiella pneumoniae 342] gi|288933391|ref|YP_003437450.1| transcription elongation factor GreA [Klebsiella variicola At-22] gi|290511558|ref|ZP_06550927.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55] gi|206566788|gb|ACI08564.1| transcription elongation factor GreA [Klebsiella pneumoniae 342] gi|288888120|gb|ADC56438.1| transcription elongation factor GreA [Klebsiella variicola At-22] gi|289776551|gb|EFD84550.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++++ PGGE YEI +V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158 >gi|167836215|ref|ZP_02463098.1| transcription elongation factor GreA [Burkholderia thailandensis MSMB43] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPTVVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|167562359|ref|ZP_02355275.1| transcription elongation factor GreA [Burkholderia oklahomensis EO147] gi|167574344|ref|ZP_02367218.1| transcription elongation factor GreA [Burkholderia oklahomensis C6786] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A++ID + + D R+ F ATV L + +G+ YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGNTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158 >gi|226941818|ref|YP_002796892.1| GreA [Laribacter hongkongensis HLHK9] gi|226716745|gb|ACO75883.1| GreA [Laribacter hongkongensis HLHK9] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MIKVPLTRFGAEQLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A+VID + + D RI FGATV L++ + D+ YQIVGD EAD++ G V Sbjct: 61 RIAELEGKLSNAQVIDPADLDADGRIVFGATVELLDLETEDEVGYQIVGDDEADIKLGKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD + V APGG + YE+L V +I Sbjct: 121 SVNSPIARALIGKEAGDTVEVMAPGGIREYEVLDVKYI 158 >gi|320174545|gb|EFW49681.1| Transcription elongation factor GreA [Shigella dysenteriae CDC 74-1112] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQTIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|212709999|ref|ZP_03318127.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM 30120] gi|212687408|gb|EEB46936.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM 30120] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVFGANKLREELEYLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++VID++ M+ + R+ FGATVS++ ++ ++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIESKLSHSQVIDVTKMANNGRVIFGATVSVLNVDTDEELTYRIVGDDEADIKVNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D++++ PGG+ +EIL+V +I Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158 >gi|75676634|ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] gi|123773178|sp|Q3SPT8|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|74421504|gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 121/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T G + EL+ RQ +RPRII+ I+EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157 >gi|46202225|ref|ZP_00053548.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 152 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 82/151 (54%), Positives = 118/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EGR++EL Sbjct: 1 MTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEGRVSEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+II+RA VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S+ SP+ Sbjct: 61 EDIISRAHVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMSVHSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK LGD + V APGG K+YEI+ V + Sbjct: 121 ARALIGKHLGDTVEVTAPGGSKSYEIVDVKF 151 >gi|291616001|ref|YP_003518743.1| GreA [Pantoea ananatis LMG 20103] gi|291151031|gb|ADD75615.1| GreA [Pantoea ananatis LMG 20103] gi|327396252|dbj|BAK13674.1| transcription elongation factor GreA [Pantoea ananatis AJ13355] Length = 158 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ + PGG+ YEIL+V +I Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYI 158 >gi|107022368|ref|YP_620695.1| transcription elongation factor GreA [Burkholderia cenocepacia AU 1054] gi|116689315|ref|YP_834938.1| transcription elongation factor GreA [Burkholderia cenocepacia HI2424] gi|170732614|ref|YP_001764561.1| transcription elongation factor GreA [Burkholderia cenocepacia MC0-3] gi|206559640|ref|YP_002230401.1| transcription elongation factor GreA [Burkholderia cenocepacia J2315] gi|254245763|ref|ZP_04939084.1| Prokaryotic transcription elongation factor GreA [Burkholderia cenocepacia PC184] gi|254252705|ref|ZP_04946023.1| Prokaryotic transcription elongation factor GreA [Burkholderia dolosa AUO158] gi|105892557|gb|ABF75722.1| transcription elongation factor GreA [Burkholderia cenocepacia AU 1054] gi|116647404|gb|ABK08045.1| transcription elongation factor GreA [Burkholderia cenocepacia HI2424] gi|124870539|gb|EAY62255.1| Prokaryotic transcription elongation factor GreA [Burkholderia cenocepacia PC184] gi|124895314|gb|EAY69194.1| Prokaryotic transcription elongation factor GreA [Burkholderia dolosa AUO158] gi|169815856|gb|ACA90439.1| transcription elongation factor GreA [Burkholderia cenocepacia MC0-3] gi|198035678|emb|CAR51565.1| transcription elongation factor [Burkholderia cenocepacia J2315] gi|325525887|gb|EGD03598.1| transcription elongation factor GreA [Burkholderia sp. TJI49] Length = 158 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQIIDPTVLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|293393162|ref|ZP_06637477.1| transcription elongation factor GreA [Serratia odorifera DSM 4582] gi|291424308|gb|EFE97522.1| transcription elongation factor GreA [Serratia odorifera DSM 4582] Length = 158 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M R+ FG+TV+++ +S D+ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNTGRVIFGSTVTVMNLDSEDEVTYRIVGDDEADFKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|83859439|ref|ZP_00952960.1| transcription elongation factor GreA [Oceanicaulis alexandrii HTCC2633] gi|83852886|gb|EAP90739.1| transcription elongation factor GreA [Oceanicaulis alexandrii HTCC2633] Length = 152 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 87/151 (57%), Positives = 118/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EGR+ EL Sbjct: 1 MTAEGHKALDEELKHLKSVERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEGRVQEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I RA+VID+S MSG ++ FGATV++V++++ + Y+IVGD EADV+SG +S+SSPI Sbjct: 61 EDKIARAQVIDVSKMSGTQVKFGATVTVVDEDTDQESTYKIVGDDEADVKSGKISLSSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA+I KE GD++ VNAPGG K+YEIL+V W Sbjct: 121 ARAMINKEEGDVVEVNAPGGVKSYEILKVEW 151 >gi|332290209|ref|YP_004421061.1| transcription elongation factor GreA [Gallibacterium anatis UMN179] gi|330433105|gb|AEC18164.1| transcription elongation factor GreA [Gallibacterium anatis UMN179] Length = 158 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGANLLREELDYLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID++ ++ + R+ FGATV LV + D+ YQIVGD EAD++ GL+ Sbjct: 61 RIQEIEGKLSNAQIIDVTKITNNGRVIFGATVVLVNVETDDEVTYQIVGDDEADIKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGKE+ D +++ PGG+ ++I+ V + Sbjct: 121 SVNSPIARGLIGKEVDDNVTITTPGGKVEFDIISVEY 157 >gi|217976860|ref|YP_002361007.1| transcription elongation factor GreA [Methylocella silvestris BL2] gi|217502236|gb|ACK49645.1| transcription elongation factor GreA [Methylocella silvestris BL2] Length = 152 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 90/151 (59%), Positives = 125/151 (82%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G ++ EL+ RQQ ERPRII+AI+EAR++GDLSENAEY +AKE Q+LNEGR+AEL Sbjct: 1 MTAAGHLALEDELKRRQQIERPRIIQAIAEARSHGDLSENAEYHSAKEAQSLNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ ++R+EVID+S +SG + FGATV+L+++++ +K YQIVG+ EADV+SG VSI+SP Sbjct: 61 EDKLSRSEVIDVSKLSGATVMFGATVTLIDEDTEAEKTYQIVGETEADVKSGRVSITSPT 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK++GD + V PGG K+YEIL+V + Sbjct: 121 ARALIGKKVGDTVEVTTPGGGKSYEILKVSF 151 >gi|218779092|ref|YP_002430410.1| transcription elongation factor GreA [Desulfatibacillum alkenivorans AK-01] gi|218760476|gb|ACL02942.1| transcription elongation factor GreA [Desulfatibacillum alkenivorans AK-01] Length = 155 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 111/155 (71%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G +++Q EL + ERPR I+ I EARA+GDLSENAEY AAKE Q G Sbjct: 1 MERTPITPEGLERLQNELVQLKTVERPRNIQDIEEARAHGDLSENAEYHAAKERQGFIAG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE + A+VID ST GD FGATV L ++G++ +YQ++G E+++Q+G +S Sbjct: 61 RIAELEYKVASADVIDPSTQKGDTAVFGATVVLENIDTGEEVSYQLLGPDESNIQAGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++SP+ +AL+GK+ GD + V PGG++ +E++++ Sbjct: 121 VTSPLGKALVGKKPGDEVKVQTPGGQRHFEVVEIQ 155 >gi|157368727|ref|YP_001476716.1| transcription elongation factor GreA [Serratia proteamaculans 568] gi|157320491|gb|ABV39588.1| transcription elongation factor GreA [Serratia proteamaculans 568] Length = 158 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE+ D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLIGKEVDDVVVIKTPGGDVDYEILKVDYL 158 >gi|295677142|ref|YP_003605666.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295436985|gb|ADG16155.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 3 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+ Sbjct: 63 RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V +I Sbjct: 123 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYI 160 >gi|24114470|ref|NP_708980.1| transcription elongation factor GreA [Shigella flexneri 2a str. 301] gi|26249764|ref|NP_755804.1| transcription elongation factor GreA [Escherichia coli CFT073] gi|30064519|ref|NP_838690.1| transcription elongation factor GreA [Shigella flexneri 2a str. 2457T] gi|38704147|ref|NP_312087.2| transcription elongation factor GreA [Escherichia coli O157:H7 str. Sakai] gi|89109944|ref|AP_003724.1| transcription elongation factor [Escherichia coli str. K-12 substr. W3110] gi|90111554|ref|NP_417648.4| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|91212603|ref|YP_542589.1| transcription elongation factor GreA [Escherichia coli UTI89] gi|110643421|ref|YP_671151.1| transcription elongation factor GreA [Escherichia coli 536] gi|110807047|ref|YP_690567.1| transcription elongation factor GreA [Shigella flexneri 5 str. 8401] gi|117625475|ref|YP_858798.1| transcription elongation factor GreA [Escherichia coli APEC O1] gi|157156605|ref|YP_001464656.1| transcription elongation factor GreA [Escherichia coli E24377A] gi|157162664|ref|YP_001459982.1| transcription elongation factor GreA [Escherichia coli HS] gi|161367516|ref|NP_289755.2| transcription elongation factor GreA [Escherichia coli O157:H7 EDL933] gi|161950034|ref|YP_404844.2| transcription elongation factor GreA [Shigella dysenteriae Sd197] gi|161984851|ref|YP_409528.2| transcription elongation factor GreA [Shigella boydii Sb227] gi|161986440|ref|YP_312137.2| transcription elongation factor GreA [Shigella sonnei Ss046] gi|168752874|ref|ZP_02777896.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4113] gi|168754163|ref|ZP_02779170.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4401] gi|168769037|ref|ZP_02794044.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4486] gi|168781325|ref|ZP_02806332.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4076] gi|168786067|ref|ZP_02811074.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC869] gi|170018569|ref|YP_001723523.1| transcription elongation factor GreA [Escherichia coli ATCC 8739] gi|170082716|ref|YP_001732036.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|170683303|ref|YP_001745453.1| transcription elongation factor GreA [Escherichia coli SMS-3-5] gi|187733737|ref|YP_001881904.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94] gi|194430233|ref|ZP_03062731.1| transcription elongation factor GreA [Escherichia coli B171] gi|195938400|ref|ZP_03083782.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4024] gi|208812520|ref|ZP_03253849.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4045] gi|208818669|ref|ZP_03258989.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4042] gi|209400428|ref|YP_002272651.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4115] gi|209920656|ref|YP_002294740.1| transcription elongation factor GreA [Escherichia coli SE11] gi|215488497|ref|YP_002330928.1| transcription elongation factor GreA [Escherichia coli O127:H6 str. E2348/69] gi|217326880|ref|ZP_03442963.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14588] gi|218550464|ref|YP_002384255.1| transcription elongation factor GreA [Escherichia fergusonii ATCC 35469] gi|218555751|ref|YP_002388664.1| transcription elongation factor GreA [Escherichia coli IAI1] gi|218560251|ref|YP_002393164.1| transcription elongation factor GreA [Escherichia coli S88] gi|218691471|ref|YP_002399683.1| transcription elongation factor GreA [Escherichia coli ED1a] gi|218696886|ref|YP_002404553.1| transcription elongation factor GreA [Escherichia coli 55989] gi|218701950|ref|YP_002409579.1| transcription elongation factor GreA [Escherichia coli IAI39] gi|218706801|ref|YP_002414320.1| transcription elongation factor GreA [Escherichia coli UMN026] gi|227887902|ref|ZP_04005707.1| transcription elongation factor GreA [Escherichia coli 83972] gi|237706067|ref|ZP_04536548.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA] gi|238902283|ref|YP_002928079.1| transcription elongation factor [Escherichia coli BW2952] gi|253771985|ref|YP_003034816.1| transcription elongation factor GreA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038346|ref|ZP_04872404.1| transcription elongation factor GreA [Escherichia sp. 1_1_43] gi|254163123|ref|YP_003046231.1| transcription elongation factor GreA [Escherichia coli B str. REL606] gi|254795130|ref|YP_003079967.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14359] gi|256018900|ref|ZP_05432765.1| transcription elongation factor GreA [Shigella sp. D9] gi|256024244|ref|ZP_05438109.1| transcription elongation factor GreA [Escherichia sp. 4_1_40B] gi|260845994|ref|YP_003223772.1| transcription elongation factor GreA [Escherichia coli O103:H2 str. 12009] gi|260857308|ref|YP_003231199.1| transcription elongation factor GreA [Escherichia coli O26:H11 str. 11368] gi|261228192|ref|ZP_05942473.1| transcription elongation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261255048|ref|ZP_05947581.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. FRIK966] gi|291284555|ref|YP_003501373.1| Transcription elongation factor greA [Escherichia coli O55:H7 str. CB9615] gi|293406790|ref|ZP_06650716.1| transcription elongation factor greA [Escherichia coli FVEC1412] gi|293412553|ref|ZP_06655276.1| transcription elongation factor greA [Escherichia coli B354] gi|293416611|ref|ZP_06659250.1| transcription elongation factor greA [Escherichia coli B185] gi|293449515|ref|ZP_06663936.1| transcription elongation factor greA [Escherichia coli B088] gi|297519952|ref|ZP_06938338.1| transcription elongation factor GreA [Escherichia coli OP50] gi|298382531|ref|ZP_06992128.1| transcription elongation factor greA [Escherichia coli FVEC1302] gi|300817566|ref|ZP_07097782.1| transcription elongation factor GreA [Escherichia coli MS 107-1] gi|300823855|ref|ZP_07103979.1| transcription elongation factor GreA [Escherichia coli MS 119-7] gi|300897946|ref|ZP_07116324.1| transcription elongation factor GreA [Escherichia coli MS 198-1] gi|300904368|ref|ZP_07122220.1| transcription elongation factor GreA [Escherichia coli MS 84-1] gi|300926078|ref|ZP_07141897.1| transcription elongation factor GreA [Escherichia coli MS 182-1] gi|300929873|ref|ZP_07145318.1| transcription elongation factor GreA [Escherichia coli MS 187-1] gi|300938093|ref|ZP_07152870.1| transcription elongation factor GreA [Escherichia coli MS 21-1] gi|300948832|ref|ZP_07162899.1| transcription elongation factor GreA [Escherichia coli MS 116-1] gi|300955767|ref|ZP_07168111.1| transcription elongation factor GreA [Escherichia coli MS 175-1] gi|300980086|ref|ZP_07174836.1| transcription elongation factor GreA [Escherichia coli MS 200-1] gi|300990828|ref|ZP_07179355.1| transcription elongation factor GreA [Escherichia coli MS 45-1] gi|301022036|ref|ZP_07185979.1| transcription elongation factor GreA [Escherichia coli MS 69-1] gi|301047975|ref|ZP_07195018.1| transcription elongation factor GreA [Escherichia coli MS 185-1] gi|301301761|ref|ZP_07207895.1| transcription elongation factor GreA [Escherichia coli MS 124-1] gi|301326392|ref|ZP_07219750.1| transcription elongation factor GreA [Escherichia coli MS 78-1] gi|301644892|ref|ZP_07244863.1| transcription elongation factor GreA [Escherichia coli MS 146-1] gi|306816477|ref|ZP_07450609.1| transcription elongation factor GreA [Escherichia coli NC101] gi|307139867|ref|ZP_07499223.1| transcription elongation factor GreA [Escherichia coli H736] gi|307313114|ref|ZP_07592740.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309793759|ref|ZP_07688185.1| transcription elongation factor GreA [Escherichia coli MS 145-7] gi|312968481|ref|ZP_07782690.1| transcription elongation factor GreA domain protein [Escherichia coli 2362-75] gi|312972545|ref|ZP_07786719.1| transcription elongation factor GreA domain protein [Escherichia coli 1827-70] gi|331643879|ref|ZP_08345010.1| transcription elongation factor GreA [Escherichia coli H736] gi|331648981|ref|ZP_08350069.1| transcription elongation factor GreA [Escherichia coli M605] gi|331654785|ref|ZP_08355785.1| transcription elongation factor GreA [Escherichia coli M718] gi|331659468|ref|ZP_08360410.1| transcription elongation factor GreA [Escherichia coli TA206] gi|331664793|ref|ZP_08365698.1| transcription elongation factor GreA [Escherichia coli TA143] gi|331670008|ref|ZP_08370853.1| transcription elongation factor GreA [Escherichia coli TA271] gi|331674713|ref|ZP_08375472.1| transcription elongation factor GreA [Escherichia coli TA280] gi|331679260|ref|ZP_08379932.1| transcription elongation factor GreA [Escherichia coli H591] gi|331684828|ref|ZP_08385420.1| transcription elongation factor GreA [Escherichia coli H299] gi|332279988|ref|ZP_08392401.1| transcription elongation factor GreA [Shigella sp. D9] gi|62288136|sp|P0A6W5|GREA_ECOLI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288137|sp|P0A6W6|GREA_ECOL6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288138|sp|P0A6W7|GREA_ECO57 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|62288139|sp|P0A6W8|GREA_SHIFL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157831240|pdb|1GRJ|A Chain A, Grea Transcript Cleavage Factor From Escherichia Coli gi|26110192|gb|AAN82378.1|AE016767_138 Transcription elongation factor greA [Escherichia coli CFT073] gi|41611|emb|CAA38521.1| unnamed protein product [Escherichia coli K-12] gi|746399|gb|AAA97506.1| transcription elongation factor [Escherichia coli] gi|24053653|gb|AAN44687.1| transcription elongation factor [Shigella flexneri 2a str. 301] gi|30042778|gb|AAP18501.1| transcription elongation factor [Shigella flexneri 2a str. 2457T] gi|85675975|dbj|BAE77225.1| transcription elongation factor [Escherichia coli str. K12 substr. W3110] gi|87082225|gb|AAC76213.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|91074177|gb|ABE09058.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Escherichia coli UTI89] gi|110345013|gb|ABG71250.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Escherichia coli 536] gi|110616595|gb|ABF05262.1| transcription elongation factor [Shigella flexneri 5 str. 8401] gi|115514599|gb|ABJ02674.1| transcription elongation factor GreA [Escherichia coli APEC O1] gi|157068344|gb|ABV07599.1| transcription elongation factor GreA [Escherichia coli HS] gi|157078635|gb|ABV18343.1| transcription elongation factor GreA [Escherichia coli E24377A] gi|169753497|gb|ACA76196.1| transcription elongation factor GreA [Escherichia coli ATCC 8739] gi|169890551|gb|ACB04258.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|170521021|gb|ACB19199.1| transcription elongation factor GreA [Escherichia coli SMS-3-5] gi|187430729|gb|ACD10003.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94] gi|188013493|gb|EDU51615.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4113] gi|189001112|gb|EDU70098.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4076] gi|189358744|gb|EDU77163.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4401] gi|189361832|gb|EDU80251.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4486] gi|189373995|gb|EDU92411.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC869] gi|194411734|gb|EDX28058.1| transcription elongation factor GreA [Escherichia coli B171] gi|208733797|gb|EDZ82484.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4045] gi|208738792|gb|EDZ86474.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4042] gi|209161828|gb|ACI39261.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. EC4115] gi|209913915|dbj|BAG78989.1| transcription elongation factor [Escherichia coli SE11] gi|215266569|emb|CAS11008.1| transcription elongation factor [Escherichia coli O127:H6 str. E2348/69] gi|217319247|gb|EEC27672.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. TW14588] gi|218353618|emb|CAU99817.1| transcription elongation factor [Escherichia coli 55989] gi|218358005|emb|CAQ90651.1| transcription elongation factor [Escherichia fergusonii ATCC 35469] gi|218362519|emb|CAR00143.1| transcription elongation factor [Escherichia coli IAI1] gi|218367020|emb|CAR04791.1| transcription elongation factor [Escherichia coli S88] gi|218371936|emb|CAR19792.1| transcription elongation factor [Escherichia coli IAI39] gi|218429035|emb|CAR09981.2| transcription elongation factor [Escherichia coli ED1a] gi|218433898|emb|CAR14815.1| transcription elongation factor [Escherichia coli UMN026] gi|222034898|emb|CAP77641.1| Transcription elongation factor greA [Escherichia coli LF82] gi|226839970|gb|EEH71991.1| transcription elongation factor GreA [Escherichia sp. 1_1_43] gi|226899107|gb|EEH85366.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA] gi|227835298|gb|EEJ45764.1| transcription elongation factor GreA [Escherichia coli 83972] gi|238863677|gb|ACR65675.1| transcription elongation factor [Escherichia coli BW2952] gi|242378724|emb|CAQ33514.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)] gi|253323029|gb|ACT27631.1| transcription elongation factor GreA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975024|gb|ACT40695.1| transcription elongation factor GreA [Escherichia coli B str. REL606] gi|253979180|gb|ACT44850.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)] gi|254594530|gb|ACT73891.1| transcription elongation factor [Escherichia coli O157:H7 str. TW14359] gi|257755957|dbj|BAI27459.1| transcription elongation factor GreA [Escherichia coli O26:H11 str. 11368] gi|257761141|dbj|BAI32638.1| transcription elongation factor GreA [Escherichia coli O103:H2 str. 12009] gi|260447792|gb|ACX38214.1| transcription elongation factor GreA [Escherichia coli DH1] gi|281180223|dbj|BAI56553.1| transcription elongation factor [Escherichia coli SE15] gi|281602564|gb|ADA75548.1| Transcription elongation factor greA [Shigella flexneri 2002017] gi|284923204|emb|CBG36298.1| transcription elongation factor [Escherichia coli 042] gi|290764428|gb|ADD58389.1| Transcription elongation factor greA [Escherichia coli O55:H7 str. CB9615] gi|291322605|gb|EFE62034.1| transcription elongation factor greA [Escherichia coli B088] gi|291426796|gb|EFE99828.1| transcription elongation factor greA [Escherichia coli FVEC1412] gi|291431967|gb|EFF04950.1| transcription elongation factor greA [Escherichia coli B185] gi|291469324|gb|EFF11815.1| transcription elongation factor greA [Escherichia coli B354] gi|294491555|gb|ADE90311.1| transcription elongation factor GreA [Escherichia coli IHE3034] gi|298277671|gb|EFI19187.1| transcription elongation factor greA [Escherichia coli FVEC1302] gi|300300160|gb|EFJ56545.1| transcription elongation factor GreA [Escherichia coli MS 185-1] gi|300307860|gb|EFJ62380.1| transcription elongation factor GreA [Escherichia coli MS 200-1] gi|300317362|gb|EFJ67146.1| transcription elongation factor GreA [Escherichia coli MS 175-1] gi|300358338|gb|EFJ74208.1| transcription elongation factor GreA [Escherichia coli MS 198-1] gi|300397751|gb|EFJ81289.1| transcription elongation factor GreA [Escherichia coli MS 69-1] gi|300403691|gb|EFJ87229.1| transcription elongation factor GreA [Escherichia coli MS 84-1] gi|300407048|gb|EFJ90586.1| transcription elongation factor GreA [Escherichia coli MS 45-1] gi|300417867|gb|EFK01178.1| transcription elongation factor GreA [Escherichia coli MS 182-1] gi|300451688|gb|EFK15308.1| transcription elongation factor GreA [Escherichia coli MS 116-1] gi|300456914|gb|EFK20407.1| transcription elongation factor GreA [Escherichia coli MS 21-1] gi|300462206|gb|EFK25699.1| transcription elongation factor GreA [Escherichia coli MS 187-1] gi|300523623|gb|EFK44692.1| transcription elongation factor GreA [Escherichia coli MS 119-7] gi|300529864|gb|EFK50926.1| transcription elongation factor GreA [Escherichia coli MS 107-1] gi|300842742|gb|EFK70502.1| transcription elongation factor GreA [Escherichia coli MS 124-1] gi|300846911|gb|EFK74671.1| transcription elongation factor GreA [Escherichia coli MS 78-1] gi|301076798|gb|EFK91604.1| transcription elongation factor GreA [Escherichia coli MS 146-1] gi|305850042|gb|EFM50501.1| transcription elongation factor GreA [Escherichia coli NC101] gi|306907025|gb|EFN37533.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307555275|gb|ADN48050.1| transcription elongation factor GreA [Escherichia coli ABU 83972] gi|307625220|gb|ADN69524.1| transcription elongation factor GreA [Escherichia coli UM146] gi|308122716|gb|EFO59978.1| transcription elongation factor GreA [Escherichia coli MS 145-7] gi|309703607|emb|CBJ02947.1| transcription elongation factor [Escherichia coli ETEC H10407] gi|310334922|gb|EFQ01127.1| transcription elongation factor GreA domain protein [Escherichia coli 1827-70] gi|312286699|gb|EFR14610.1| transcription elongation factor GreA domain protein [Escherichia coli 2362-75] gi|312947738|gb|ADR28565.1| transcription elongation factor GreA [Escherichia coli O83:H1 str. NRG 857C] gi|313648576|gb|EFS13018.1| transcription elongation factor GreA domain protein [Shigella flexneri 2a str. 2457T] gi|315062487|gb|ADT76814.1| transcription elongation factor [Escherichia coli W] gi|315137767|dbj|BAJ44926.1| transcription elongation factor greA [Escherichia coli DH1] gi|315257106|gb|EFU37074.1| transcription elongation factor GreA [Escherichia coli MS 85-1] gi|315288955|gb|EFU48353.1| transcription elongation factor GreA [Escherichia coli MS 110-3] gi|315294888|gb|EFU54227.1| transcription elongation factor GreA [Escherichia coli MS 153-1] gi|315297888|gb|EFU57158.1| transcription elongation factor GreA [Escherichia coli MS 16-3] gi|315617264|gb|EFU97873.1| transcription elongation factor GreA domain protein [Escherichia coli 3431] gi|320181456|gb|EFW56374.1| Transcription elongation factor GreA [Shigella boydii ATCC 9905] gi|320186668|gb|EFW61392.1| Transcription elongation factor GreA [Shigella flexneri CDC 796-83] gi|320189534|gb|EFW64193.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. EC1212] gi|320194666|gb|EFW69296.1| Transcription elongation factor GreA [Escherichia coli WV_060327] gi|320202095|gb|EFW76670.1| Transcription elongation factor GreA [Escherichia coli EC4100B] gi|320640252|gb|EFX09824.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. G5101] gi|320645549|gb|EFX14558.1| transcription elongation factor GreA [Escherichia coli O157:H- str. 493-89] gi|320650859|gb|EFX19316.1| transcription elongation factor GreA [Escherichia coli O157:H- str. H 2687] gi|320656240|gb|EFX24152.1| transcription elongation factor GreA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661930|gb|EFX29338.1| transcription elongation factor GreA [Escherichia coli O55:H7 str. USDA 5905] gi|320666765|gb|EFX33744.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. LSU-61] gi|323162873|gb|EFZ48708.1| transcription elongation factor GreA domain protein [Escherichia coli E128010] gi|323165141|gb|EFZ50931.1| transcription elongation factor GreA domain protein [Shigella sonnei 53G] gi|323183135|gb|EFZ68533.1| transcription elongation factor GreA domain protein [Escherichia coli 1357] gi|323189198|gb|EFZ74482.1| transcription elongation factor GreA domain protein [Escherichia coli RN587/1] gi|323376925|gb|ADX49193.1| transcription elongation factor GreA [Escherichia coli KO11] gi|323936125|gb|EGB32419.1| transcription elongation protein GreA [Escherichia coli E1520] gi|323941719|gb|EGB37898.1| transcription elongation proteinGreA [Escherichia coli E482] gi|323946965|gb|EGB42981.1| transcription elongation protein GreA [Escherichia coli H120] gi|323951300|gb|EGB47175.1| transcription elongation proteinGreA [Escherichia coli H252] gi|323957672|gb|EGB53386.1| transcription elongation proteinGreA [Escherichia coli H263] gi|323961164|gb|EGB56778.1| transcription elongation proteinGreA [Escherichia coli H489] gi|323966361|gb|EGB61795.1| transcription elongation proteinGreA [Escherichia coli M863] gi|323970256|gb|EGB65527.1| transcription elongation proteinGreA [Escherichia coli TA007] gi|323979102|gb|EGB74180.1| transcription elongation proteinGreA [Escherichia coli TW10509] gi|324008752|gb|EGB77971.1| transcription elongation factor GreA [Escherichia coli MS 57-2] gi|324012130|gb|EGB81349.1| transcription elongation factor GreA [Escherichia coli MS 60-1] gi|324018294|gb|EGB87513.1| transcription elongation factor GreA [Escherichia coli MS 117-3] gi|324115215|gb|EGC09179.1| transcription elongation proteinGreA [Escherichia fergusonii B253] gi|324119546|gb|EGC13428.1| transcription elongation proteinGreA [Escherichia coli E1167] gi|325498762|gb|EGC96621.1| transcription elongation factor GreA [Escherichia fergusonii ECD227] gi|326337881|gb|EGD61715.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. 1125] gi|326347451|gb|EGD71176.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str. 1044] gi|330909235|gb|EGH37749.1| transcription elongation factor GreA [Escherichia coli AA86] gi|331037350|gb|EGI09574.1| transcription elongation factor GreA [Escherichia coli H736] gi|331042728|gb|EGI14870.1| transcription elongation factor GreA [Escherichia coli M605] gi|331048167|gb|EGI20244.1| transcription elongation factor GreA [Escherichia coli M718] gi|331054050|gb|EGI26079.1| transcription elongation factor GreA [Escherichia coli TA206] gi|331058041|gb|EGI30023.1| transcription elongation factor GreA [Escherichia coli TA143] gi|331062921|gb|EGI34835.1| transcription elongation factor GreA [Escherichia coli TA271] gi|331068152|gb|EGI39548.1| transcription elongation factor GreA [Escherichia coli TA280] gi|331073325|gb|EGI44648.1| transcription elongation factor GreA [Escherichia coli H591] gi|331078443|gb|EGI49649.1| transcription elongation factor GreA [Escherichia coli H299] gi|332086244|gb|EGI91402.1| transcription elongation factor GreA domain protein [Shigella boydii 5216-82] gi|332086457|gb|EGI91604.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 155-74] gi|332090708|gb|EGI95802.1| transcription elongation factor GreA domain protein [Shigella boydii 3594-74] gi|332102340|gb|EGJ05686.1| transcription elongation factor GreA [Shigella sp. D9] gi|332345137|gb|AEE58471.1| transcription elongation factor protein GreA [Escherichia coli UMNK88] gi|332752340|gb|EGJ82730.1| transcription elongation factor GreA domain protein [Shigella flexneri 4343-70] gi|332752866|gb|EGJ83251.1| transcription elongation factor GreA domain protein [Shigella flexneri K-671] gi|332754345|gb|EGJ84711.1| transcription elongation factor GreA domain protein [Shigella flexneri 2747-71] gi|332765177|gb|EGJ95404.1| transcription elongation factor GreA [Shigella flexneri 2930-71] gi|332998823|gb|EGK18419.1| transcription elongation factor GreA domain protein [Shigella flexneri VA-6] gi|332999259|gb|EGK18845.1| transcription elongation factor GreA domain protein [Shigella flexneri K-272] gi|333000243|gb|EGK19826.1| transcription elongation factor GreA domain protein [Shigella flexneri K-218] gi|333014600|gb|EGK33947.1| transcription elongation factor GreA domain protein [Shigella flexneri K-304] gi|333014983|gb|EGK34327.1| transcription elongation factor GreA domain protein [Shigella flexneri K-227] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|52842830|ref|YP_096629.1| transcription elongation factor GreA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295463|ref|YP_127878.1| transcription elongation factor GreA [Legionella pneumophila str. Lens] gi|54298613|ref|YP_124982.1| transcription elongation factor GreA [Legionella pneumophila str. Paris] gi|81367742|sp|Q5WTH5|GREA_LEGPL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81369784|sp|Q5X1R6|GREA_LEGPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81376728|sp|Q5ZS95|GREA_LEGPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|52629941|gb|AAU28682.1| transcription elongation factor GreA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752398|emb|CAH13830.1| transcription elongation factor GreA [Legionella pneumophila str. Paris] gi|53755295|emb|CAH16789.1| transcription elongation factor GreA [Legionella pneumophila str. Lens] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPIARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158 >gi|114799104|ref|YP_759372.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC 15444] gi|122942711|sp|Q0C4H1|GREA_HYPNA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114739278|gb|ABI77403.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC 15444] Length = 157 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 80/156 (51%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T++G +Q EL+ + ERP II AISEAR++GDLSENAEY AAKE Q+ EG Sbjct: 1 MERIPMTAEGHAALQAELKVLKSVERPSIIAAISEARSHGDLSENAEYHAAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++EL++ + RA+VID+S + G ++ FGATV++ + ++ D++ Y+IVG+ EADV+ G +S Sbjct: 61 RISELDDKLARADVIDVSKLGGSKVRFGATVTIADVDTEDEQTYKIVGEDEADVKQGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SPIARALIGKE GD V AP G + YE+++V++ Sbjct: 121 VTSPIARALIGKEEGDEAEVAAPAGARAYEVIKVVY 156 >gi|238755147|ref|ZP_04616493.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473] gi|238706594|gb|EEP98965.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G D++++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTIRGADQLREELDYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ F +TV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFASTVTVLNLDTEEQQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGG+ +EIL+V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGDVEFEILKVEYL 158 >gi|46203896|ref|ZP_00050819.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 165 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 94/155 (60%), Positives = 126/155 (81%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR Sbjct: 9 DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI Sbjct: 69 VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIARALIGK +GD + V PGG K+YE++ + W Sbjct: 129 SSPIARALIGKGVGDTVEVTTPGGGKSYEVVAIEW 163 >gi|188493925|ref|ZP_03001195.1| transcription elongation factor GreA [Escherichia coli 53638] gi|188489124|gb|EDU64227.1| transcription elongation factor GreA [Escherichia coli 53638] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSNEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|329123413|ref|ZP_08251977.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC 11116] gi|327470995|gb|EGF16450.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC 11116] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYGIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >gi|317493617|ref|ZP_07952038.1| transcription elongation factor GreA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918560|gb|EFV39898.1| transcription elongation factor GreA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAEKLREELEYLKGTRRPQIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A VID++ + R+ FG TVS+ ++ DK+ Y IVGD EAD + + Sbjct: 61 RIQEIEAKLSNANVIDVTKIPNTGRVIFGCTVSVENLDTEDKQTYSIVGDDEADFKQNRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GDI+ + PGGE +EIL+V +I Sbjct: 121 SVNSPIARGLIGKEQGDIVVIKTPGGEVEFEILKVEYI 158 >gi|241763933|ref|ZP_04761975.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN] gi|241366756|gb|EER61197.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EG Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVITAIAEARAQGDLSENADYDAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID ++ G ++ FGATV L +++SGD YQIVG+ EAD++ GL+ Sbjct: 61 RIQEIEGKLSVAQVIDPGSVDGGGKVVFGATVELEDEDSGDTVTYQIVGEDEADLKHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ISSPIARALIGKE GD V APGG + YE++ V + Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVRY 157 >gi|241663320|ref|YP_002981680.1| transcription elongation factor GreA [Ralstonia pickettii 12D] gi|309782465|ref|ZP_07677189.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA] gi|240865347|gb|ACS63008.1| transcription elongation factor GreA [Ralstonia pickettii 12D] gi|308918802|gb|EFP64475.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID +++ D R+ FGAT+ L + +SG YQIVGD EAD+++G + Sbjct: 61 RIQEIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 121 SISSPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158 >gi|300718587|ref|YP_003743390.1| transcription elongation factor [Erwinia billingiae Eb661] gi|299064423|emb|CAX61543.1| Transcription elongation factor [Erwinia billingiae Eb661] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTIKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FG+TV ++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMNANGRVIFGSTVKVLNLDTDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE+ D+ V PGG+ YEIL++ ++ Sbjct: 121 SVNSPMARGLIGKEVDDVTIVKTPGGDVEYEILKIEYL 158 >gi|163850521|ref|YP_001638564.1| transcription elongation factor GreA [Methylobacterium extorquens PA1] gi|218529218|ref|YP_002420034.1| transcription elongation factor GreA [Methylobacterium chloromethanicum CM4] gi|240137586|ref|YP_002962057.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens AM1] gi|254560057|ref|YP_003067152.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens DM4] gi|163662126|gb|ABY29493.1| transcription elongation factor GreA [Methylobacterium extorquens PA1] gi|218521521|gb|ACK82106.1| transcription elongation factor GreA [Methylobacterium chloromethanicum CM4] gi|240007554|gb|ACS38780.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens AM1] gi|254267335|emb|CAX23167.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Methylobacterium extorquens DM4] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 94/155 (60%), Positives = 126/155 (81%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR Sbjct: 4 DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE++I RAE+ID S +SG +I FGA V L+++++ ++K YQ+VG+ EADV+ G VSI Sbjct: 64 VLELESMIARAEIIDTSKLSGSKIKFGARVKLLDEDTEEEKTYQLVGEPEADVREGRVSI 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIARALIGK +GD + V PGG K+YE++ V W Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158 >gi|261867705|ref|YP_003255627.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D11S-1] gi|293392110|ref|ZP_06636444.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413037|gb|ACX82408.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952644|gb|EFE02763.1| transcription elongation factor GreA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++VID++ + + ++ FGATV L+ N+ ++ +Y+IVGD EAD+++GL+ Sbjct: 61 RIQEIEGKLANSQVIDVTKIPNNGKVIFGATVVLLNTNTDEEVSYRIVGDDEADIKNGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D+++++ PGG +EI++V ++ Sbjct: 121 SVNSPIARGLVGKEVDDVVNISTPGGTVEFEIIEVDYV 158 >gi|163794418|ref|ZP_02188389.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199] gi|159180142|gb|EDP64665.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199] Length = 157 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 115/154 (74%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T+ GF ++Q ELR + ERP +IKAI+EAR +GDLSENAEY AA++ Q+ EG Sbjct: 1 MDKVPITAIGFQRLQDELRQLKSVERPAVIKAIAEAREHGDLSENAEYHAARDRQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE++I+R EVIDI ++GD + FG TV + ++++ ++ Y IVG EAD+ G++S Sbjct: 61 RVAELEDVISRCEVIDIKKLTGDTVTFGVTVEVADEDTDEETKYTIVGPYEADLSKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SPIARALIGK +GD + V P G K+ EIL + Sbjct: 121 TASPIARALIGKRVGDSVEVATPRGAKSLEILSI 154 >gi|294788006|ref|ZP_06753250.1| transcription elongation factor GreA [Simonsiella muelleri ATCC 29453] gi|294484299|gb|EFG31982.1| transcription elongation factor GreA [Simonsiella muelleri ATCC 29453] Length = 158 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+TS+G +K++ EL+ + RP II AI+EAR++GDLSENAEY++AKE Q EG Sbjct: 1 MKKIPLTSQGAEKLKNELQHLKSVARPEIIAAIAEARSHGDLSENAEYESAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++I+ + + +I FGATV++++ +S ++ YQIVGD EAD++ + Sbjct: 61 RIAELESKLSHAQIINPAEIHAEGKIVFGATVTVMDLDSDEESTYQIVGDDEADIKLFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARA+IGKE GD+ V AP G + YEIL V +I Sbjct: 121 SVSSPIARAMIGKEEGDVAEVQAPSGIREYEILSVQYI 158 >gi|260869932|ref|YP_003236334.1| transcription elongation factor GreA [Escherichia coli O111:H- str. 11128] gi|257766288|dbj|BAI37783.1| transcription elongation factor GreA [Escherichia coli O111:H- str. 11128] gi|323178643|gb|EFZ64219.1| transcription elongation factor GreA domain protein [Escherichia coli 1180] Length = 158 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S ++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDKEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|261493679|ref|ZP_05990198.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494346|ref|ZP_05990840.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309995|gb|EEY11204.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310679|gb|EEY11863.1| transcription elongation factor GreA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 179 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 22 MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 81 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 82 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 141 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I Sbjct: 142 SVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI 179 >gi|328542878|ref|YP_004302987.1| transcription elongation factor GreA [polymorphum gilvum SL003B-26A1] gi|326412624|gb|ADZ69687.1| transcription elongation factor GreA [Polymorphum gilvum SL003B-26A1] Length = 152 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 90/152 (59%), Positives = 123/152 (80%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ +Q EL+ R ERPRI++AISEARA+GDLSENAEY AAKE Q+ NEGR+AEL Sbjct: 1 MTAAGYAMLQAELKERTSVERPRIVEAISEARAHGDLSENAEYHAAKEAQSHNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ + RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD EADV+ G +SISSPI Sbjct: 61 EDKLGRAEIIDVSKLSGDTVKFGATVTLIDEDTEEEKQYMIVGDVEADVKQGKISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK +GD + V+APGG ++YEI + +I Sbjct: 121 ARALIGKSVGDSVEVSAPGGSRSYEIEDIKFI 152 >gi|32265653|ref|NP_859685.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC 51449] gi|81666522|sp|Q7VJT9|GREA_HELHP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|32261701|gb|AAP76751.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 106/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + P+T+ G++K+ EL+ ++ ERPRI+ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MATEPMTNYGYEKLCAELKNLKEVERPRIVVEIDIARSHGDLKENAEYHAAREKQAFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL ++ A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S Sbjct: 61 RINELGLMLANAQVIDPASLPHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSPIA+AL+GK GD +S+ P GE +EIL+V + Sbjct: 121 VSSPIAKALMGKSEGDEVSITLPNGENEFEILEVFY 156 >gi|119897674|ref|YP_932887.1| putative transcription elongation factor [Azoarcus sp. BH72] gi|119670087|emb|CAL94000.1| putative transcription elongation factor [Azoarcus sp. BH72] Length = 158 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNKTPLTIAGAEKLRLELHRLKTVDRPNVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E + A++ID + + D R FGATV L + +SG YQIVG+ EAD++ + Sbjct: 61 RIAEVEGKLANAQIIDPTLLDADGRCVFGATVELEDMDSGQVVTYQIVGEDEADIKEFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GDI V APGG + YEI+ V +I Sbjct: 121 SVSSPIARALIGKYAGDIAEVQAPGGIREYEIIDVRYI 158 >gi|114570689|ref|YP_757369.1| transcription elongation factor GreA [Maricaulis maris MCS10] gi|122315542|sp|Q0AMQ6|GREA_MARMM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114341151|gb|ABI66431.1| transcription elongation factor GreA [Maricaulis maris MCS10] Length = 157 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 87/156 (55%), Positives = 120/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG Sbjct: 1 MNKIPMTVAGQIALDEELKRLKTIERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ + RA+VIDI+ MSGD + FGATV+++++++ + YQIVG+ E+DV+SG +S Sbjct: 61 RVQELEDKLARAQVIDITKMSGDTVKFGATVTVLDEDTEQESTYQIVGEDESDVKSGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIAR++I KE+GD+ VNAPGG K+YEI+ V W Sbjct: 121 ISSPIARSMINKEVGDVAEVNAPGGLKSYEIMSVSW 156 >gi|92118375|ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14] gi|123386993|sp|Q1QJF3|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|91801269|gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 158 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 88/157 (56%), Positives = 121/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MIEKVPMTRGGHAALADELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEDQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RAE+ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157 >gi|53803860|ref|YP_114288.1| transcription elongation factor GreA [Methylococcus capsulatus str. Bath] gi|81681779|sp|Q607B0|GREA_METCA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|53757621|gb|AAU91912.1| transcription elongation factor GreA [Methylococcus capsulatus str. Bath] Length = 158 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T++G +K+++EL + RPR+I+AI+EARA+GDL ENAEYQAA+E Q EG Sbjct: 1 MNKTPMTTRGAEKLREELNHLKTVARPRVIEAIAEARAHGDLKENAEYQAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ + G ++ FGAT + + SG+ YQIVG+ EA+++ G + Sbjct: 61 RIKEIEAKLANAQIIDVTRLNPGGKVVFGATAEIEDLASGEVVTYQIVGEDEAEIKEGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK+ GD+ +V APGG + YEI+ V ++ Sbjct: 121 SVTSPIARALIGKQEGDVATVQAPGGTREYEIVSVRYV 158 >gi|115525956|ref|YP_782867.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisA53] gi|122295116|sp|Q07JJ7|GREA_RHOP5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|115519903|gb|ABJ07887.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisA53] Length = 160 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 88/156 (56%), Positives = 123/156 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ +Q EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTANGYAALQVELKQRQTVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A+LE+ + RA+VIDI+ +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S Sbjct: 61 RIADLEDKLARADVIDITKLSGDTIMFGATVTLVDEDTEKKAVWQIVGEPEADAKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 ITSPLARALIGKKKGASVEVMAPGGAKAYEITKVEW 156 >gi|291279481|ref|YP_003496316.1| transcription elongation factor GreA [Deferribacter desulfuricans SSM1] gi|290754183|dbj|BAI80560.1| transcription elongation factor GreA [Deferribacter desulfuricans SSM1] Length = 157 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 116/156 (74%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +G++K++ EL ++ ER +IKAI EAR +GDLSENAEY AAKE Q + E Sbjct: 1 MDRIPITKEGYEKVKAELERLKKVERREVIKAIEEARGHGDLSENAEYDAAKERQGMIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + R EVID S + GD++ FGATV + ++G+ K Y+IVG E+D+ G +S Sbjct: 61 RIAELESKMARFEVIDTSKLKGDKVVFGATVKIENLDTGEIKTYKIVGPDESDISKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARAL+GK++GD ++V AP GE YEIL++ + Sbjct: 121 IISPIARALVGKKVGDDVTVIAPNGEVEYEILEISF 156 >gi|307129375|ref|YP_003881391.1| transcription elongation factor [Dickeya dadantii 3937] gi|306526904|gb|ADM96834.1| transcription elongation factor [Dickeya dadantii 3937] Length = 158 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNVDTEEEQTYRIVGDDEADFKLNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D+++++ PGG YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVAISTPGGVVEYEILKVEYL 158 >gi|171318235|ref|ZP_02907398.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5] gi|172060237|ref|YP_001807889.1| transcription elongation factor GreA [Burkholderia ambifaria MC40-6] gi|171096579|gb|EDT41473.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5] gi|171992754|gb|ACB63673.1| transcription elongation factor GreA [Burkholderia ambifaria MC40-6] Length = 158 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|56478163|ref|YP_159752.1| transcription elongation factor [Aromatoleum aromaticum EbN1] gi|56314206|emb|CAI08851.1| transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 184 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY AAKE Q E Sbjct: 26 IMIKTPLTVAGAEKLRNELHRLKTVERPSVIAAIAEARSHGDLSENAEYDAAKERQGFVE 85 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E I+ A++ID + D R FGATV L + ++G YQIVGD EAD++ Sbjct: 86 GRIKEIEGKISSAQIIDPKLLDADGRCVFGATVELEDMDTGQTVMYQIVGDDEADLKENK 145 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARALIGK GDI V+APGG + YEI+ V ++ Sbjct: 146 ISISSPIARALIGKFAGDIAEVHAPGGVREYEIIDVRYV 184 >gi|22124593|ref|NP_668016.1| transcription elongation factor GreA [Yersinia pestis KIM 10] gi|45440432|ref|NP_991971.1| transcription elongation factor GreA [Yersinia pestis biovar Microtus str. 91001] gi|51594823|ref|YP_069014.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 32953] gi|108806053|ref|YP_649969.1| transcription elongation factor GreA [Yersinia pestis Antiqua] gi|108813409|ref|YP_649176.1| transcription elongation factor GreA [Yersinia pestis Nepal516] gi|145600801|ref|YP_001164877.1| transcription elongation factor GreA [Yersinia pestis Pestoides F] gi|153947048|ref|YP_001402559.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 31758] gi|153997282|ref|ZP_02022382.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|162421747|ref|YP_001608277.1| transcription elongation factor GreA [Yersinia pestis Angola] gi|165928150|ref|ZP_02223982.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937569|ref|ZP_02226132.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. IP275] gi|166011327|ref|ZP_02232225.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214002|ref|ZP_02240037.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401279|ref|ZP_02306779.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420462|ref|ZP_02312215.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423351|ref|ZP_02315104.1| transcription elongation factor GreA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470193|ref|ZP_02334897.1| transcription elongation factor GreA [Yersinia pestis FV-1] gi|170025954|ref|YP_001722459.1| transcription elongation factor GreA [Yersinia pseudotuberculosis YPIII] gi|186893832|ref|YP_001870944.1| transcription elongation factor GreA [Yersinia pseudotuberculosis PB1/+] gi|218930519|ref|YP_002348394.1| transcription elongation factor GreA [Yersinia pestis CO92] gi|229839158|ref|ZP_04459317.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896647|ref|ZP_04511814.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|229899722|ref|ZP_04514863.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903884|ref|ZP_04518997.1| transcription elongation factor [Yersinia pestis Nepal516] gi|270489127|ref|ZP_06206201.1| transcription elongation factor GreA [Yersinia pestis KIM D27] gi|25452996|sp|Q8ZBB3|GREA_YERPE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238687311|sp|A9R594|GREA_YERPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21957396|gb|AAM84267.1|AE013670_4 transcription elongation factor [Yersinia pestis KIM 10] gi|45435289|gb|AAS60848.1| transcription elongation factor [Yersinia pestis biovar Microtus str. 91001] gi|51588105|emb|CAH19711.1| transcription elongation factor [Yersinia pseudotuberculosis IP 32953] gi|108777057|gb|ABG19576.1| transcription elongation factor GreA [Yersinia pestis Nepal516] gi|108777966|gb|ABG12024.1| transcription elongation factor GreA [Yersinia pestis Antiqua] gi|115349130|emb|CAL22093.1| transcription elongation factor [Yersinia pestis CO92] gi|145212497|gb|ABP41904.1| transcription elongation factor GreA [Yersinia pestis Pestoides F] gi|149288919|gb|EDM38999.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|152958543|gb|ABS46004.1| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 31758] gi|162354562|gb|ABX88510.1| transcription elongation factor GreA [Yersinia pestis Angola] gi|165914674|gb|EDR33288.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. IP275] gi|165919837|gb|EDR37138.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. F1991016] gi|165989711|gb|EDR42012.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204797|gb|EDR49277.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961268|gb|EDR57289.1| transcription elongation factor GreA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049304|gb|EDR60712.1| transcription elongation factor GreA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057521|gb|EDR67267.1| transcription elongation factor GreA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752488|gb|ACA70006.1| transcription elongation factor GreA [Yersinia pseudotuberculosis YPIII] gi|186696858|gb|ACC87487.1| transcription elongation factor GreA [Yersinia pseudotuberculosis PB1/+] gi|229679654|gb|EEO75757.1| transcription elongation factor [Yersinia pestis Nepal516] gi|229687214|gb|EEO79289.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695524|gb|EEO85571.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700425|gb|EEO88457.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|262363429|gb|ACY60150.1| transcription elongation factor GreA [Yersinia pestis D106004] gi|262367196|gb|ACY63753.1| transcription elongation factor GreA [Yersinia pestis D182038] gi|270337631|gb|EFA48408.1| transcription elongation factor GreA [Yersinia pestis KIM D27] gi|320013709|gb|ADV97280.1| transcription elongation factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 158 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +++NY+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 158 >gi|301025974|ref|ZP_07189457.1| transcription elongation factor GreA [Escherichia coli MS 196-1] gi|299879900|gb|EFI88111.1| transcription elongation factor GreA [Escherichia coli MS 196-1] Length = 158 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ F ATV+++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFCATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|162451868|ref|YP_001614235.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce 56'] gi|161162450|emb|CAN93755.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce 56'] Length = 158 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+P+T +G ++++E+R ++ + P+++K I AR +GDLSENAEY AAKE Q + Sbjct: 1 MSEKVPMTPEGQARLREEMRRLKEIDLPQVVKDIGTAREHGDLSENAEYHAAKERQGMIV 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE ++RAEVID S +SG ++ FGA V L ++ +++++QIVG +EAD++ G + Sbjct: 61 ARISYLEQTLSRAEVIDPSKLSGSKVQFGAKVKLANVDTDEEQSFQIVGPEEADLKVGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARAL+G E+G+ + VN P G +TYEIL+V + Sbjct: 121 SIASPLARALLGHEVGEEVRVNMPAGPRTYEILEVSY 157 >gi|329297293|ref|ZP_08254629.1| GreA [Plautia stali symbiont] Length = 158 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG +K+++EL + +RPRII +I+EAR GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEARELGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTAMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V P G+ YE+L+V +I Sbjct: 121 SVNSPMARGLMGKEADDVAIVKTPSGDVEYEVLKVEYI 158 >gi|148358641|ref|YP_001249848.1| transcription elongation factor GreA [Legionella pneumophila str. Corby] gi|166200670|sp|A5IAV2|GREA_LEGPC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148280414|gb|ABQ54502.1| transcription elongation factor GreA [Legionella pneumophila str. Corby] Length = 160 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 1 MSKHPMTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ + Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SSPIARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158 >gi|134295356|ref|YP_001119091.1| transcription elongation factor GreA [Burkholderia vietnamiensis G4] gi|134138513|gb|ABO54256.1| transcription elongation factor GreA [Burkholderia vietnamiensis G4] Length = 158 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V APGG + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPGGVREYEIISVSYI 158 >gi|209884272|ref|YP_002288129.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] gi|209872468|gb|ACI92264.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] Length = 178 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 92/157 (58%), Positives = 125/157 (79%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G +++EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 21 MVEKLPMTAAGHLALEEELKQRQAVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 80 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ I RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G + Sbjct: 81 GRIAELEDKIARADIIDVSKLSGDTIKFGATVTLIDEDTEKKAVYQIVGESEADAKKGRI 140 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 141 SITSPLARALIGKKKGTSVEVVAPGGAKAYEIAKVDW 177 >gi|145633182|ref|ZP_01788913.1| transcription elongation factor GreA [Haemophilus influenzae 3655] gi|144986028|gb|EDJ92618.1| transcription elongation factor GreA [Haemophilus influenzae 3655] Length = 157 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGKEL D +++ PGG ++I++V + Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNY 157 >gi|323526828|ref|YP_004228981.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001] gi|323383830|gb|ADX55921.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001] Length = 158 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID S + D R+ FGATV L + SG YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLESGASVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|91975935|ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] gi|91682391|gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] Length = 165 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 8 MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 68 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK G + V APGG K YEI +V W Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164 >gi|209517189|ref|ZP_03266034.1| transcription elongation factor GreA [Burkholderia sp. H160] gi|209502325|gb|EEA02336.1| transcription elongation factor GreA [Burkholderia sp. H160] Length = 158 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYV 158 >gi|332306411|ref|YP_004434262.1| transcription elongation factor GreA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173740|gb|AEE22994.1| transcription elongation factor GreA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 158 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+KG D +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MTQYPMTAKGADMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + ++ FG TV+++ S D+ Y+IVGD EAD+++ L+ Sbjct: 61 RIQDIEGKLSNAQIIDVTKMPNNGKVIFGTTVTILNLESDDEITYKIVGDDEADIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK+L D++++ P G +EI++V ++ Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158 >gi|187924842|ref|YP_001896484.1| transcription elongation factor GreA [Burkholderia phytofirmans PsJN] gi|187716036|gb|ACD17260.1| transcription elongation factor GreA [Burkholderia phytofirmans PsJN] Length = 158 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID + + D R+ FGATV L + +SG YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|238020364|ref|ZP_04600790.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147] gi|237867344|gb|EEP68350.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147] Length = 158 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +K++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q EG Sbjct: 1 MQKIPLTVAGAEKLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID + +I FGATV++ + + ++ YQIVGD EAD++ G + Sbjct: 61 RIAELESKLSHAQIIDPKEIHAEGKIVFGATVTVSDLETDEEATYQIVGDDEADIKIGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARA+IGKE GD+ V AP G + Y+IL V +I Sbjct: 121 SVNSPIARAMIGKEEGDVAEVQAPSGVREYDILNVQYI 158 >gi|115351223|ref|YP_773062.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD] gi|170697948|ref|ZP_02889031.1| transcription elongation factor GreA [Burkholderia ambifaria IOP40-10] gi|115281211|gb|ABI86728.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD] gi|170137114|gb|EDT05359.1| transcription elongation factor GreA [Burkholderia ambifaria IOP40-10] Length = 158 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVITAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|260220957|emb|CBA29042.1| Transcription elongation factor greA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 163 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + P+T +G + ++ EL + ERP +I+AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 6 MATYPITKRGAEMLKAELHKLKTVERPSVIQAIAEARAQGDLSENADYDAAKERQGFIEG 65 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID ST+ D R+ FGATV L +++SG + YQIVG+ EAD++ GL+ Sbjct: 66 RIQEVEGKLSAAQVIDPSTIQADGRVVFGATVELEDEDSGQQVKYQIVGEDEADLKQGLI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ISSPIARALIGKE+GD V APGGE+ YE++ V +I Sbjct: 126 NISSPIARALIGKEVGDTAVVQAPGGERAYEVVAVHYI 163 >gi|261342624|ref|ZP_05970482.1| transcription elongation factor GreA [Enterobacter cancerogenus ATCC 35316] gi|288315272|gb|EFC54210.1| transcription elongation factor GreA [Enterobacter cancerogenus ATCC 35316] Length = 158 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGATVTVLNLDNDEEQKYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE YEI++V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGEVEYEIIKVEYL 158 >gi|154252759|ref|YP_001413583.1| transcription elongation factor GreA [Parvibaculum lavamentivorans DS-1] gi|154156709|gb|ABS63926.1| transcription elongation factor GreA [Parvibaculum lavamentivorans DS-1] Length = 152 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 93/151 (61%), Positives = 125/151 (82%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G+ +++E+R+ + ERPRIIKAISEARA+GDLSENAEY AAKE Q LNE R+AEL Sbjct: 1 MTSEGYKSLEEEIRFLKSVERPRIIKAISEARAHGDLSENAEYHAAKEQQGLNESRVAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RAEVID+S +SGD + FGATV LV++++ ++ +YQIVG+ EADV+ G VSI+SPI Sbjct: 61 EDKISRAEVIDVSKLSGDTVMFGATVKLVDEDTEEEVSYQIVGEIEADVKQGRVSITSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK +GD + V PGG K+YEIL++ + Sbjct: 121 ARALIGKSVGDSVEVVTPGGGKSYEILKISF 151 >gi|148258011|ref|YP_001242596.1| transcription elongation factor GreA [Bradyrhizobium sp. BTAi1] gi|229485760|sp|A5ER96|GREA_BRASB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146410184|gb|ABQ38690.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Bradyrhizobium sp. BTAi1] Length = 158 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 88/157 (56%), Positives = 126/157 (80%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+TS G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKVPMTSGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA+VID++ +SG+ I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADVIDVTKLSGETIKFGATVTLIDEDTEKKTVWQIVGEVEADAKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK++G + V APGG K+YEI +V W Sbjct: 121 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 157 >gi|84500249|ref|ZP_00998515.1| transcription elongation factor GreA [Oceanicola batsensis HTCC2597] gi|84392183|gb|EAQ04451.1| transcription elongation factor GreA [Oceanicola batsensis HTCC2597] Length = 156 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTRAGFTALEAELKHLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID T+SG + FGA V++V++++ ++K +QIVG+ EAD++ GL++ Sbjct: 61 RIKELEGVISLADVIDPKTLSG-AVKFGAKVTVVDEDTDEEKTWQIVGEYEADIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGG+++YEIL++ + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILKIEY 155 >gi|91788539|ref|YP_549491.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] gi|91697764|gb|ABE44593.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] Length = 158 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G +K++ EL + +RP +I +ISEARA GDLSENAEY AAK+ Q EG Sbjct: 1 MATLPITKRGAEKLKAELHQLKTVDRPWVINSISEARAQGDLSENAEYDAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID S + G R+ FG+T+ L ++ SGD YQIVG+ EAD++ G V Sbjct: 61 RIQEIEGKLSAAQIIDPSELDAGGRVVFGSTIELQDEESGDTVTYQIVGEDEADIKHGRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +I SPIARALIGK+ GD V APGG K YEI+ V++I Sbjct: 121 NIGSPIARALIGKDEGDTAEVQAPGGVKRYEIVAVMYI 158 >gi|296158199|ref|ZP_06841031.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295891535|gb|EFG71321.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 158 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ SV APGG + YEI+ V ++ Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158 >gi|253999583|ref|YP_003051646.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4] gi|313201618|ref|YP_004040276.1| transcription elongation factor grea [Methylovorus sp. MP688] gi|253986262|gb|ACT51119.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4] gi|312440934|gb|ADQ85040.1| transcription elongation factor GreA [Methylovorus sp. MP688] Length = 158 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G + ++QEL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG Sbjct: 1 MNQIPITVNGAELLKQELQRLRSVDRPNVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A VID T++ R FGATV + + ++GD YQIVGD EAD++ G + Sbjct: 61 RIAEIEAKLSNAMVIDPKTLNAEGRCVFGATVEVEDLDNGDVSTYQIVGDDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIAR LIGK GD+ V APGG ++YE+L V +I Sbjct: 121 SIGSPIARGLIGKTAGDVAEVMAPGGLRSYEVLDVQYI 158 >gi|78065906|ref|YP_368675.1| transcription elongation factor GreA [Burkholderia sp. 383] gi|77966651|gb|ABB08031.1| transcription elongation factor GreA [Burkholderia sp. 383] Length = 158 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + ++ EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|121608129|ref|YP_995936.1| transcription elongation factor GreA [Verminephrobacter eiseniae EF01-2] gi|189042254|sp|A1WH11|GREA_VEREI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|121552769|gb|ABM56918.1| transcription elongation factor GreA [Verminephrobacter eiseniae EF01-2] Length = 158 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 111/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++QEL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EG Sbjct: 1 MTTIPITKRGAEKLKQELHHLKTVERPSVITAIAEARAQGDLSENADYDAAKDRQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+ Sbjct: 61 RIQEIEGKLSVAQVIDPGEVDGGGKVVFGATVQLEDEESGDTVTYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ISSPIARALIGKE GD V AP G + YE++ V + Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPSGIRRYEVVAVSY 157 >gi|161525197|ref|YP_001580209.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|189350064|ref|YP_001945692.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|221201965|ref|ZP_03575001.1| transcription elongation factor GreA [Burkholderia multivorans CGD2M] gi|221204905|ref|ZP_03577922.1| transcription elongation factor GreA [Burkholderia multivorans CGD2] gi|221213882|ref|ZP_03586855.1| transcription elongation factor GreA [Burkholderia multivorans CGD1] gi|160342626|gb|ABX15712.1| transcription elongation factor GreA [Burkholderia multivorans ATCC 17616] gi|189334086|dbj|BAG43156.1| transcription elongation factor [Burkholderia multivorans ATCC 17616] gi|221166059|gb|EED98532.1| transcription elongation factor GreA [Burkholderia multivorans CGD1] gi|221175762|gb|EEE08192.1| transcription elongation factor GreA [Burkholderia multivorans CGD2] gi|221178048|gb|EEE10459.1| transcription elongation factor GreA [Burkholderia multivorans CGD2M] Length = 158 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQIIDPTVLEADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|121594730|ref|YP_986626.1| transcription elongation factor GreA [Acidovorax sp. JS42] gi|222110667|ref|YP_002552931.1| transcription elongation factor grea [Acidovorax ebreus TPSY] gi|120606810|gb|ABM42550.1| transcription elongation factor GreA [Acidovorax sp. JS42] gi|221730111|gb|ACM32931.1| transcription elongation factor GreA [Acidovorax ebreus TPSY] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVISAIAEARAQGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID S + G R+ FGATV L ++++GD YQIVG+ EAD++ GL+ Sbjct: 61 RIMEIEGKLSAAQIIDPSALDAGGRVVFGATVELEDEDTGDAVKYQIVGEDEADLKHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SSPIARALIGKE GD V APGG + YE++ V +I Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVSYI 158 >gi|27382489|ref|NP_774018.1| transcription elongation factor GreA [Bradyrhizobium japonicum USDA 110] gi|81734738|sp|Q89DR1|GREA_BRAJA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27355661|dbj|BAC52643.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 92/156 (58%), Positives = 125/156 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS GF + +EL+ RQ E+RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTSAGFAALGEELKKRQSEDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + RA++IDIS +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S Sbjct: 61 RIAELEDKLARADIIDISKLSGDTIKFGATVTLVDEDTEKKAVWQIVGEVEADAKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARALIGK+ G + VNAPGG K YEI +V W Sbjct: 121 ITSPLARALIGKKKGSTVEVNAPGGAKAYEITKVEW 156 >gi|300918939|ref|ZP_07135497.1| transcription elongation factor GreA [Escherichia coli MS 115-1] gi|300413935|gb|EFJ97245.1| transcription elongation factor GreA [Escherichia coli MS 115-1] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+ + +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTGLNLDSDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 >gi|83951519|ref|ZP_00960251.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM] gi|83836525|gb|EAP75822.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM] Length = 164 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G + ++ EL+ + EERP II+AI+EAR +GDLSENAEY +A+E Q+ EG Sbjct: 9 MEKIPMTRRGHEALEVELKHLKSEERPAIIRAIAEAREHGDLSENAEYHSAREKQSFIEG 68 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEV D + +SG I FGATV+LV++++ ++K +QIVG+ EA ++ GL++ Sbjct: 69 RIKELEGVLSLAEVFDPAKLSGP-IKFGATVTLVDEDTDEEKTWQIVGEHEASIEKGLLN 127 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGK+ GD + V PGGE++YE+L++ +I Sbjct: 128 IKSPIARALIGKDEGDSVEVRTPGGERSYEVLKIEYI 164 >gi|307944270|ref|ZP_07659611.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4] gi|307772616|gb|EFO31836.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 95/157 (60%), Positives = 126/157 (80%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+ +Q+EL+ R ERPRI++AI+EARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTDGYAMLQEELKQRTSVERPRIVEAIAEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ ++RAEVID+S MSGD I FGATVSLV++++ ++K Y IVGD EADV+ +S Sbjct: 61 RVAELEDKLSRAEVIDVSKMSGDVIKFGATVSLVDEDTEEEKKYMIVGDVEADVKQHKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK GD + V APGG + YEI V ++ Sbjct: 121 ISSPIARALIGKTEGDSVEVAAPGGARAYEITAVEYV 157 >gi|268592834|ref|ZP_06127055.1| transcription elongation factor GreA [Providencia rettgeri DSM 1131] gi|291311620|gb|EFE52073.1| transcription elongation factor GreA [Providencia rettgeri DSM 1131] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G DK+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVLGADKLREELEFLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+ Sbjct: 61 RIQEIEGKLSHAQVIDVTKMVNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ +EIL+V +I Sbjct: 121 SVNSPIARGLVGKEVDDAVSIKTPGGDVEFEILKVEYI 158 >gi|238750117|ref|ZP_04611620.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380] gi|238711661|gb|EEQ03876.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVGGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDIS M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDISKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL+V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILKVDYV 158 >gi|293607001|ref|ZP_06689345.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC 43553] gi|292814598|gb|EFF73735.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC 43553] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +ID +++ R FGATV + + +SGD+ YQIVGD EAD+++ L+ Sbjct: 61 RIAELEGTLSNAHLIDPTSLDAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKANLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLGVRYI 158 >gi|315497713|ref|YP_004086517.1| transcription elongation factor grea [Asticcacaulis excentricus CB 48] gi|315415725|gb|ADU12366.1| transcription elongation factor GreA [Asticcacaulis excentricus CB 48] Length = 152 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 121/152 (79%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+ Sbjct: 1 MTVAGYQSLDDELKRLKSVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RA+VID+S +SG++I FGATV++V++++ ++ YQ+VG+ EADV++G +S+SSP+ Sbjct: 61 EDKISRAQVIDVSKLSGNQIKFGATVTVVDEDTEEEGRYQVVGEHEADVKAGRISLSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +RA+IGKE+GD++ VN P G K YEIL+V WI Sbjct: 121 SRAMIGKEVGDVVEVNTPAGVKAYEILKVEWI 152 >gi|299132015|ref|ZP_07025210.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] gi|298592152|gb|EFI52352.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 90/157 (57%), Positives = 124/157 (78%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G ++ EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MVEKLPITAAGLVALEDELKQRQSVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTEKKVVYQIVGETEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YE+ +V W Sbjct: 121 SITSPLARALIGKKKGTSVEVVAPGGAKAYEVAKVDW 157 >gi|270265050|ref|ZP_06193313.1| transcription elongation factor GreA [Serratia odorifera 4Rx13] gi|270040984|gb|EFA14085.1| transcription elongation factor GreA [Serratia odorifera 4Rx13] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|237808999|ref|YP_002893439.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187] gi|237501260|gb|ACQ93853.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T G +K+++EL + + +RP+II+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNQTPMTVLGAEKLREELEYLKTVQRPQIIQAIAEARAHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E +++A++ID++ + + R+ FGATV++++ ++ ++ Y+IVGD E+D++SGL+ Sbjct: 61 RIQEVEAKLSKAQIIDVTKLPKNGRVIFGATVTVLKCDTEEEITYRIVGDDESDIKSGLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR LIGKE+ D+ ++ P G+ +EI+QV +I Sbjct: 121 SINSPIARGLIGKEVDDVATITTPAGKVDFEIVQVEYI 158 >gi|209545146|ref|YP_002277375.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] gi|209532823|gb|ACI52760.1| transcription elongation factor GreA [Gluconacetobacter diazotrophicus PAl 5] Length = 152 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 84/151 (55%), Positives = 122/151 (80%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+ EL Sbjct: 1 MTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRILEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+SSP+ Sbjct: 61 EDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A++LIGK +GD +SV APGG++TYEIL V + Sbjct: 121 AKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 151 >gi|304396338|ref|ZP_07378219.1| GreA/GreB family elongation factor [Pantoea sp. aB] gi|304355847|gb|EFM20213.1| GreA/GreB family elongation factor [Pantoea sp. aB] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158 >gi|91775133|ref|YP_544889.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91709120|gb|ABE49048.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG + ++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG Sbjct: 1 MNQIPITVKGAELLKAELQRLRSVDRPAVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A +ID +T++ R FGATV + + +SG+ YQIVGD EAD++SG + Sbjct: 61 RIAEIEAKLSNAMIIDPATLNAEGRCVFGATVEVEDLDSGEVSTYQIVGDDEADIKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGK GD+ V APGG ++YEIL V +I Sbjct: 121 SIGSPIARALIGKVEGDVAEVVAPGGLRSYEILSVKYI 158 >gi|304321206|ref|YP_003854849.1| transcription elongation factor GreA [Parvularcula bermudensis HTCC2503] gi|303300108|gb|ADM09707.1| transcription elongation factor GreA [Parvularcula bermudensis HTCC2503] Length = 157 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 121/156 (77%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T GF K++ +++ + ERP +I+AISEAR +GDLSENAEY AAKE Q+ EG Sbjct: 1 MEKFPMTKAGFAKLEADIKHLKTVERPAVIQAISEAREHGDLSENAEYHAAKERQSWIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE+ +RA+VID++++SG + FGA+V+LV++ + ++K YQIVGD EAD+++G +S Sbjct: 61 QVLDLEDKHSRAQVIDVASLSGPDVKFGASVTLVDEETEEEKVYQIVGDLEADIKAGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGKE GD + V APGG YEI +V + Sbjct: 121 ISSPIARALIGKEEGDQVEVAAPGGSHIYEIEKVEY 156 >gi|317405977|gb|EFV86255.1| GreA protein [Achromobacter xylosoxidans C54] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +ID +++ R FGATV + + +SGD+ YQIVGD EAD++S L+ Sbjct: 61 RIAELEGTLSNAHLIDPTSLEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V AP G + YE+L V +I Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLSVRYI 158 >gi|240949666|ref|ZP_04754001.1| transcription elongation factor GreA [Actinobacillus minor NM305] gi|240295924|gb|EER46600.1| transcription elongation factor GreA [Actinobacillus minor NM305] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYI 158 >gi|317177306|dbj|BAJ55095.1| transcription elongation factor GreA [Helicobacter pylori F16] Length = 164 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ + + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLGNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FSSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156 >gi|146328850|ref|YP_001210068.1| transcription elongation factor GreA [Dichelobacter nodosus VCS1703A] gi|146232320|gb|ABQ13298.1| transcription elongation factor GreA [Dichelobacter nodosus VCS1703A] Length = 160 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KIP+T G + +Q EL + ++RP +I+AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MNQKIPMTKAGAEALQAELEKLKSKDRPAVIQAIAEAREHGDLKENAEYHAAREQQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ +ID++ + D R+ FG T+ L + NSG+ Y+IVG+ EAD++ G+ Sbjct: 61 GRIQEIEFKLSNVNIIDVTRLPQDGRVVFGTTIELEDANSGEIMKYKIVGEDEADIKKGM 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S SSPIARAL GKE GDI+ VN PGG+K+ EI+ V +I Sbjct: 121 ISNSSPIARALFGKEEGDIVDVNVPGGQKSLEIIAVHYI 159 >gi|253997071|ref|YP_003049135.1| transcription elongation factor GreA [Methylotenera mobilis JLW8] gi|253983750|gb|ACT48608.1| transcription elongation factor GreA [Methylotenera mobilis JLW8] Length = 160 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + PVT +G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q+ EGR+ Sbjct: 5 QFPVTVRGAELLKEELQRLRGVDRPNIIQAIAEARAQGDLSENAEYESAKERQSFIEGRI 64 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE ++ ++ID T++ R+ FGATV++ + +SGD K YQIVG+ EAD+++G +S+ Sbjct: 65 AELEAKLSNLQIIDPQTLNAEGRVVFGATVNIEDLDSGDNKTYQIVGEDEADIKNGKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIAR LIGK GDI V+APGG + YE+L VL+I Sbjct: 125 SSPIARGLIGKSAGDIAEVSAPGGVREYEVLDVLYI 160 >gi|90425319|ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB18] gi|123394824|sp|Q20ZR6|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|90107333|gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 88/157 (56%), Positives = 124/157 (78%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 1 MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 61 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK+ G + V APGG K YEI +V W Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157 >gi|217034498|ref|ZP_03439909.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10] gi|216943039|gb|EEC22518.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10] gi|315586469|gb|ADU40850.1| transcription elongation factor GreA [Helicobacter pylori 35A] gi|317178776|dbj|BAJ56564.1| transcription elongation factor GreA [Helicobacter pylori F30] Length = 164 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156 >gi|238757567|ref|ZP_04618752.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236] gi|238704329|gb|EEP96861.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FG TV ++ +S ++++Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGCTVRVLNVDSEEEQHYRIVGDDEADFKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158 >gi|254361960|ref|ZP_04978091.1| transcription elongation factor GreA [Mannheimia haemolytica PHL213] gi|153093507|gb|EDN74487.1| transcription elongation factor GreA [Mannheimia haemolytica PHL213] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I Sbjct: 121 SVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI 158 >gi|85058346|ref|YP_454048.1| transcription elongation factor [Sodalis glossinidius str. 'morsitans'] gi|84778866|dbj|BAE73643.1| transcription elongation factor [Sodalis glossinidius str. 'morsitans'] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP II +I+EAR GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLCGAEKLREELEYLKSIRRPEIILSIAEAREQGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ + R+ FGATVS+ +S +K+ ++IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKLAPSGRVIFGATVSVENLDSEEKQTFRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR L+GKE GDI+ + PGGE YEIL+V ++ Sbjct: 121 SINSPIARGLVGKEEGDIVVIKTPGGEVEYEILKVEYL 158 >gi|320540168|ref|ZP_08039823.1| putative transcription elongation factor [Serratia symbiotica str. Tucson] gi|320029834|gb|EFW11858.1| putative transcription elongation factor [Serratia symbiotica str. Tucson] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ + R+ FGATVS++ +S ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKIPNTGRVIFGATVSVLNLDSEEEVTYRIVGDDEADFKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGKE D++ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158 >gi|226329694|ref|ZP_03805212.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198] gi|225202880|gb|EEG85234.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTVLGAEKLREELEYLKNVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M+ + RI FG+TV+L+ + +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMNNNGRIIFGSTVTLLNVENEEEQTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D++ + PGG+ YE+L V +I Sbjct: 121 SVNSPIARGLIGKELDDVVVITTPGGQVEYEVLNVEYI 158 >gi|15602580|ref|NP_245652.1| transcription elongation factor GreA [Pasteurella multocida subsp. multocida str. Pm70] gi|13431536|sp|P57801|GREA_PASMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|12721009|gb|AAK02799.1| GreA [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 116/157 (73%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G ++++QEL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + +++ID++ + + ++ FGAT+ L+ ++ ++ +YQIVGD EA++++GL+ Sbjct: 61 RIQEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGKE+ D++ + PGG+ +EIL+V + Sbjct: 121 SVNSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157 >gi|300721528|ref|YP_003710803.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus nematophila ATCC 19061] gi|297628020|emb|CBJ88569.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus nematophila ATCC 19061] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + RP+II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELEHLRNVRRPQIITAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMTNNGRVIFGATVTVLNVDSDEEQTYRIVGDDEANIKENLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D + + PGG+ YE+L V ++ Sbjct: 121 SVNSPIARGLIGKEVDDAVVIATPGGQVEYEVLNVDYL 158 >gi|332530815|ref|ZP_08406741.1| transcription elongation factor GreA [Hylemonella gracilis ATCC 19624] gi|332039727|gb|EGI76127.1| transcription elongation factor GreA [Hylemonella gracilis ATCC 19624] Length = 158 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY AAK+ Q EG Sbjct: 1 MATIPITLRGAEKLKTELHRLKTVDRPAVINAIAEARAQGDLSENAEYDAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + G ++ FGATV L ++ +GD YQIVG+ EAD++ GL+ Sbjct: 61 RIQEIEGKLSAAQVIDPAGLDAGGKVVFGATVELEDEATGDSVTYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SSPIARALIGKE GD V APGG K YEI+ V + Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVKRYEIVAVSY 157 >gi|262197389|ref|YP_003268598.1| transcription elongation factor GreA [Haliangium ochraceum DSM 14365] gi|262080736|gb|ACY16705.1| transcription elongation factor GreA [Haliangium ochraceum DSM 14365] Length = 169 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 108/158 (68%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK P+T G ++ +L+ ++ +RP KAI AR +GDLSENA+Y AAKE Q + E Sbjct: 1 MADKFPMTPSGHAWMKAQLKKLKEVDRPANAKAIEVARGHGDLSENADYDAAKEEQGMIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E E + +EVID + +SG+R+ FGATV++ + ++GD+ Y IVG+ EAD+++ + Sbjct: 61 ARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+++P+ARALIGK +GD V P G + +EI+ V W+ Sbjct: 121 SVTAPVARALIGKAIGDETQVQTPKGTRAFEIVDVKWL 158 >gi|86748640|ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris HaA2] gi|86571668|gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] Length = 174 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 122/157 (77%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE Sbjct: 17 MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G + Sbjct: 77 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+ARALIGK G + V APGG K YEI +V W Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173 >gi|308189104|ref|YP_003933235.1| Transcription elongation factor greA [Pantoea vagans C9-1] gi|308059614|gb|ADO11786.1| Transcription elongation factor greA [Pantoea vagans C9-1] Length = 158 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEEATYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ V PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158 >gi|257465495|ref|ZP_05629866.1| transcription elongation factor GreA [Actinobacillus minor 202] gi|257451155|gb|EEV25198.1| transcription elongation factor GreA [Actinobacillus minor 202] Length = 158 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V ++ Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYL 158 >gi|33593266|ref|NP_880910.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33596678|ref|NP_884321.1| transcription elongation factor [Bordetella parapertussis 12822] gi|33600442|ref|NP_888002.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|29603208|emb|CAC79553.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33563641|emb|CAE42542.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33568041|emb|CAE31954.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|33573379|emb|CAE37363.1| transcription elongation factor [Bordetella parapertussis] gi|332382675|gb|AEE67522.1| transcription elongation factor [Bordetella pertussis CS] Length = 158 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++QQEL + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE ++ A +ID + + R FGATV + + +SGD+ YQIVGD EAD++S L+ Sbjct: 61 RISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V P G + YE++ V ++ Sbjct: 121 SVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL 158 >gi|153004935|ref|YP_001379260.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5] gi|152028508|gb|ABS26276.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5] Length = 168 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 120/158 (75%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++P+T G ++++EL+ + ERP+I+K I+EAR++GDLSENAEY AAKE Q+ E Sbjct: 1 MSERVPMTKGGLLRLKEELKRLKNVERPKIVKEIAEARSHGDLSENAEYHAAKEKQSHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ++E+ I AEVID+S +GDR+ FGATVSL E SGD Y+IVG+ EAD++ G + Sbjct: 61 GRILQVEHWIASAEVIDVSKHAGDRVVFGATVSLEESESGDHVTYRIVGELEADLKQGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIG+E GD ++V PGG+K YEI + ++ Sbjct: 121 SVTSPIARALIGREEGDAVTVRTPGGQKEYEIQSISFV 158 >gi|302382095|ref|YP_003817918.1| transcription elongation factor GreA [Brevundimonas subvibrioides ATCC 15264] gi|302192723|gb|ADL00295.1| transcription elongation factor GreA [Brevundimonas subvibrioides ATCC 15264] Length = 152 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 117/151 (77%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG +AE+ Sbjct: 1 MTAEGYRSLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEGSIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+RA+VID+S +SGD++ FGATV++V++++ ++ YQIVG+ EADV+ G +SISSPI Sbjct: 61 EDKISRAQVIDVSKLSGDQVKFGATVTVVDEDTEEEGRYQIVGEHEADVKKGKISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA+I K +GD + VN PGG K YEIL+V W Sbjct: 121 ARAMISKAVGDTVEVNTPGGVKAYEILKVEW 151 >gi|238787585|ref|ZP_04631383.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC 33641] gi|238724372|gb|EEQ16014.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC 33641] Length = 158 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILHVDYV 158 >gi|294676071|ref|YP_003576686.1| transcription elongation factor GreA [Rhodobacter capsulatus SB 1003] gi|294474891|gb|ADE84279.1| transcription elongation factor GreA [Rhodobacter capsulatus SB 1003] Length = 156 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G+D + +EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGYDVLDEELKTLKSVERPAVIKAIAEAREHGDLSENAEYHAAREKQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+I+ RAEVID +SG I FGATV+LV++++ +++ YQIVG+ EAD++ GL++ Sbjct: 61 RIKELESILGRAEVIDTVKLSGS-IKFGATVTLVDEDTEEERTYQIVGEHEADLERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD + V PGG+++YEIL V ++ Sbjct: 120 IKSPLARALIGKDEGDSVEVRTPGGQRSYEILSVRFL 156 >gi|149202969|ref|ZP_01879940.1| transcription elongation factor GreA [Roseovarius sp. TM1035] gi|149143515|gb|EDM31551.1| transcription elongation factor GreA [Roseovarius sp. TM1035] Length = 156 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 122/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+LV+++SG+++ YQIVG+ EA ++ GL++ Sbjct: 61 RIKELEGILSLAEVIDPAKLSGP-IKFGATVTLVDEDSGEERTYQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGKE GD + V PGG++ YE+++V +I Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRGYEVIKVAYI 156 >gi|308184650|ref|YP_003928783.1| transcription elongation factor GreA [Helicobacter pylori SJM180] gi|308060570|gb|ADO02466.1| transcription elongation factor GreA [Helicobacter pylori SJM180] gi|317014274|gb|ADU81710.1| transcription elongation factor GreA [Helicobacter pylori Gambia94/24] Length = 164 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|238026780|ref|YP_002911011.1| transcription elongation factor GreA [Burkholderia glumae BGR1] gi|237875974|gb|ACR28307.1| Transcription elongation factor GreA [Burkholderia glumae BGR1] Length = 158 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++++EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLREELQRLKSIERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID S + R+ F ATV L + SGD YQIVGD EAD+ GL+ Sbjct: 61 RIAELESKLSAAQIIDPSVLDAEGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V +I Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158 >gi|290473438|ref|YP_003466305.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus bovienii SS-2004] gi|289172738|emb|CBJ79509.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Xenorhabdus bovienii SS-2004] Length = 158 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + RP+II AI++ARA+GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELENLKNVRRPKIITAIADARAHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ ++ R+ FGATV+++ S +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMINNGRVIFGATVTVLNMGSDEEQTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D+ ++ PGG+ YE+L V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVAVISTPGGKVEYEVLNVEYL 158 >gi|254465444|ref|ZP_05078855.1| transcription elongation factor GreA [Rhodobacterales bacterium Y4I] gi|206686352|gb|EDZ46834.1| transcription elongation factor GreA [Rhodobacterales bacterium Y4I] Length = 156 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPAGHAALESELKTLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + ++G I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLNG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGE++YEIL++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155 >gi|317182174|dbj|BAJ59958.1| transcription elongation factor GreA [Helicobacter pylori F57] Length = 164 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID ST++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSTLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|319763187|ref|YP_004127124.1| transcription elongation factor grea [Alicycliphilus denitrificans BC] gi|330825250|ref|YP_004388553.1| transcription elongation factor GreA [Alicycliphilus denitrificans K601] gi|317117748|gb|ADV00237.1| transcription elongation factor GreA [Alicycliphilus denitrificans BC] gi|329310622|gb|AEB85037.1| transcription elongation factor GreA [Alicycliphilus denitrificans K601] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++QEL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPITKRGAEQLKQELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID S + G R+ FGATV L +++SG+ YQIVG+ EAD++ GL+ Sbjct: 61 RILEIEGKLSAAQIIDPSELDAGGRVVFGATVELEDEDSGEAVRYQIVGEDEADLKHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SSPIARALIGKE GD V APGG + YE++ V ++ Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVSVSYV 158 >gi|313144398|ref|ZP_07806591.1| transcription elongation factor greA [Helicobacter cinaedi CCUG 18818] gi|313129429|gb|EFR47046.1| transcription elongation factor greA [Helicobacter cinaedi CCUG 18818] Length = 162 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 110/157 (70%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MAE--PMTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ EL ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+ Sbjct: 59 ARINELGLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIA+AL+GK+ GD +S+ P GE +EIL+V + Sbjct: 119 SVSSPIAKALMGKKQGDEVSIMLPSGENEFEILEVFY 155 >gi|83854862|ref|ZP_00948392.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1] gi|83941385|ref|ZP_00953847.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36] gi|83842705|gb|EAP81872.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1] gi|83847205|gb|EAP85080.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36] Length = 156 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRAGHTALETELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID + MSG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVISLADVIDPAKMSG-AIKFGATVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG+K+YE+L++++ Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDKSYEVLKIVY 155 >gi|307637553|gb|ADN80003.1| Transcription elongation factor [Helicobacter pylori 908] gi|325996144|gb|ADZ51549.1| Transcription elongation factor [Helicobacter pylori 2018] gi|325997740|gb|ADZ49948.1| Transcription elongation factor [Helicobacter pylori 2017] Length = 164 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 106/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICTELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++G + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNGKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|326317398|ref|YP_004235070.1| transcription elongation factor GreA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374234|gb|ADX46503.1| transcription elongation factor GreA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+ Sbjct: 61 RIQEVEGKLSAAQVIDPAQLDAGGKVVFGATVDLEDEESGDPVTYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SSPIARALIGKE GD V APGG + YE++ V + Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157 >gi|254708169|ref|ZP_05169997.1| transcription elongation factor GreA [Brucella pinnipedialis M163/99/10] gi|254710541|ref|ZP_05172352.1| transcription elongation factor GreA [Brucella pinnipedialis B2/94] gi|254714723|ref|ZP_05176534.1| transcription elongation factor GreA [Brucella ceti M644/93/1] gi|254717784|ref|ZP_05179595.1| transcription elongation factor GreA [Brucella ceti M13/05/1] gi|256032034|ref|ZP_05445648.1| transcription elongation factor GreA [Brucella pinnipedialis M292/94/1] gi|256160231|ref|ZP_05457925.1| transcription elongation factor GreA [Brucella ceti M490/95/1] gi|256255437|ref|ZP_05460973.1| transcription elongation factor GreA [Brucella ceti B1/94] gi|260169170|ref|ZP_05755981.1| transcription elongation factor GreA [Brucella sp. F5/99] gi|261219633|ref|ZP_05933914.1| transcription elongation factor grea [Brucella ceti M13/05/1] gi|261222642|ref|ZP_05936923.1| transcription elongation factor grea [Brucella ceti B1/94] gi|261315677|ref|ZP_05954874.1| transcription elongation factor grea [Brucella pinnipedialis M163/99/10] gi|261318115|ref|ZP_05957312.1| transcription elongation factor grea [Brucella pinnipedialis B2/94] gi|261322521|ref|ZP_05961718.1| transcription elongation factor grea [Brucella ceti M644/93/1] gi|261758684|ref|ZP_06002393.1| transcription elongation factor greA [Brucella sp. F5/99] gi|265989145|ref|ZP_06101702.1| transcription elongation factor grea [Brucella pinnipedialis M292/94/1] gi|265998607|ref|ZP_06111164.1| transcription elongation factor grea [Brucella ceti M490/95/1] gi|260921226|gb|EEX87879.1| transcription elongation factor grea [Brucella ceti B1/94] gi|260924722|gb|EEX91290.1| transcription elongation factor grea [Brucella ceti M13/05/1] gi|261295211|gb|EEX98707.1| transcription elongation factor grea [Brucella ceti M644/93/1] gi|261297338|gb|EEY00835.1| transcription elongation factor grea [Brucella pinnipedialis B2/94] gi|261304703|gb|EEY08200.1| transcription elongation factor grea [Brucella pinnipedialis M163/99/10] gi|261738668|gb|EEY26664.1| transcription elongation factor greA [Brucella sp. F5/99] gi|262553231|gb|EEZ09065.1| transcription elongation factor grea [Brucella ceti M490/95/1] gi|264661342|gb|EEZ31603.1| transcription elongation factor grea [Brucella pinnipedialis M292/94/1] Length = 157 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 100/157 (63%), Positives = 136/157 (86%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISS IARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157 >gi|95929152|ref|ZP_01311896.1| transcription elongation factor GreA [Desulfuromonas acetoxidans DSM 684] gi|95134650|gb|EAT16305.1| transcription elongation factor GreA [Desulfuromonas acetoxidans DSM 684] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +P+T + + ++Q+EL+ R + +RP++++ I+EAR++GDLSENAEY AAK+ Q E Sbjct: 1 MSDSVPMTPECYARLQEELKNRIKVDRPKVVQDIAEARSHGDLSENAEYDAAKDRQAHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AEL + + RAEVID +++ D+I FGATV+L + +S ++ YQIVG+ EAD++ G + Sbjct: 61 GRIAELNDKLARAEVIDPKSINTDKIVFGATVTLFDTDSDNEVVYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SP+ +ALIG L D + +N P G + YE+ ++ + Sbjct: 121 SVTSPVGKALIGHTLDDEVRINVPSGTRIYEVTEIEY 157 >gi|322831206|ref|YP_004211233.1| transcription elongation factor GreA [Rahnella sp. Y9602] gi|321166407|gb|ADW72106.1| transcription elongation factor GreA [Rahnella sp. Y9602] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++++EL + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKPIPMTLRGAERLREELDHLKSVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPATGRVIFGATVTVMNLDTEEEQKYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGG+ +E+L+V ++ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEFEVLKVEYL 158 >gi|317046732|ref|YP_004114380.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] gi|316948349|gb|ADU67824.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T KG +K+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV ++ ++ ++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVQVLNLDTDEESTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR L+GKE D+ + PGG+ YEIL+V ++ Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYL 158 >gi|296136187|ref|YP_003643429.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] gi|295796309|gb|ADG31099.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+ P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q E Sbjct: 1 MM-ATPMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+A++E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G Sbjct: 60 GRIADIEGKLGTAQIIDPSELRADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI+SPIARALIGKE GD+ V APGG + YEIL V + Sbjct: 120 ISINSPIARALIGKESGDVAQVAAPGGVRQYEILAVHY 157 >gi|291613526|ref|YP_003523683.1| transcription elongation factor GreA [Sideroxydans lithotrophicus ES-1] gi|291583638|gb|ADE11296.1| transcription elongation factor GreA [Sideroxydans lithotrophicus ES-1] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G + ++QEL + +RP +I AISEARA GDLSENAEY+AAKE Q+ EG Sbjct: 1 MSKVPLTVNGAELLRQELHRLKTVDRPSVINAISEARAQGDLSENAEYEAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE + A+VID T++ D R FG+TV + + N+GD YQIVGD EAD++ + Sbjct: 61 RIVELEFKLGSAQVIDPKTVNADGRCVFGSTVVIEDTNNGDVVTYQIVGDDEADIKQRKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GDI V APGG + YE++ V +I Sbjct: 121 SISSPIARALIGKVSGDIAEVQAPGGIREYEVVDVQYI 158 >gi|261837908|gb|ACX97674.1| transcription elongation factor [Helicobacter pylori 51] gi|317180628|dbj|BAJ58414.1| transcription elongation factor GreA [Helicobacter pylori F32] gi|332673330|gb|AEE70147.1| transcription elongation factor GreA [Helicobacter pylori 83] Length = 164 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|171463553|ref|YP_001797666.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193091|gb|ACB44052.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPITKRGAELLKEELHRLKHVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++ID +++ R+ FGATV L + G + YQIVGD EAD+ S + Sbjct: 61 RIQELEGKLSAAQIIDPASLDITGRVVFGATVDLKDLEDGTRLTYQIVGDDEADIASNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALI KE GD+++V APGG + EIL V ++ Sbjct: 121 SISSPIARALISKEEGDVVAVQAPGGNREVEILAVRYV 158 >gi|330816264|ref|YP_004359969.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3] gi|327368657|gb|AEA60013.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTKRGAEQLRSELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A+VID S + R+ FGATV L + S YQIVGD EAD+ GL+ Sbjct: 61 RIAEIESKLSAAQVIDPSVIDAEGRVVFGATVELEDLGSSATVKYQIVGDDEADIDHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V AP G + YEI+ V ++ Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYV 158 >gi|126728314|ref|ZP_01744130.1| transcription elongation factor GreA [Sagittula stellata E-37] gi|126711279|gb|EBA10329.1| transcription elongation factor GreA [Sagittula stellata E-37] Length = 156 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKI +T GF ++ EL+ + ERP II+AISEAR GDL ENAEY +A+E Q EG Sbjct: 1 MDKILITRAGFTALEAELKQLKSVERPAIIQAISEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I AEVID +++SG + FGATV++V++++ ++K +QIVG+ EA ++ GL++ Sbjct: 61 RIKELESVIGLAEVIDPASLSGS-VKFGATVTVVDEDTDEEKTWQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGKE GD + V PGGEK+YEIL V + Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGEKSYEILSVSY 155 >gi|300703811|ref|YP_003745413.1| transcription elongation factor [Ralstonia solanacearum CFBP2957] gi|299071474|emb|CBJ42794.1| transcription elongation factor [Ralstonia solanacearum CFBP2957] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G + Sbjct: 61 RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158 >gi|50119643|ref|YP_048810.1| transcription elongation factor GreA [Pectobacterium atrosepticum SCRI1043] gi|49610169|emb|CAG73609.1| transcription elongation factor [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQYPMTLRGAEKLREELDHLKSVRRPEIITAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ ++E ++ A++ID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L Sbjct: 61 RIQDIEAKLSNAQIIDVTKMAANNGRVIFGATVAVMNLDSEEEQTYRIVGDDEADFKQNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159 >gi|120611280|ref|YP_970958.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1] gi|120589744|gb|ABM33184.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + G R+ FGATV L ++ SGD YQIVG+ EAD++ GL+ Sbjct: 61 RIQEVEGKLSAAQVIDPAQLDAGGRVVFGATVDLEDEESGDLVTYQIVGEDEADLKQGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SSPIARALIGKE GD V APGG + YE++ V + Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157 >gi|292486826|ref|YP_003529696.1| transcription elongation factor greA [Erwinia amylovora CFBP1430] gi|292900775|ref|YP_003540144.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291200623|emb|CBJ47755.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291552243|emb|CBA19280.1| Transcription elongation factor greA [Erwinia amylovora CFBP1430] gi|312170894|emb|CBX79153.1| Transcription elongation factor greA [Erwinia amylovora ATCC BAA-2158] Length = 160 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ YEI++V ++ Sbjct: 121 LISVNSPMARGLVGKLADDVTVIKTPGGDVEYEIIKVEYL 160 >gi|237749802|ref|ZP_04580282.1| transcription elongation factor GreA [Helicobacter bilis ATCC 43879] gi|229374552|gb|EEO24943.1| transcription elongation factor GreA [Helicobacter bilis ATCC 43879] Length = 161 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 108/157 (68%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P++ GF+K+ QEL+ ++ +RP++ + I AR++GDL ENAEY AAKE Q E Sbjct: 1 MTE--PMSKYGFNKLTQELKDLKEVQRPKVAQEIDIARSHGDLKENAEYHAAKEKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ EL +++ A+VID ST+ D+++FG+T++++ N+ + Y IVG E++ GL+ Sbjct: 59 FKINELSKMLSNAQVIDPSTLPHDKVSFGSTITILNLNTDKEVVYTIVGTTESNPSKGLI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ LIGKE GD + +N P GE +EIL++ + Sbjct: 119 SFNSPLAKELIGKEEGDEVIINLPAGETEFEILKIEY 155 >gi|114771295|ref|ZP_01448715.1| transcription elongation factor GreA [alpha proteobacterium HTCC2255] gi|114548220|gb|EAU51107.1| transcription elongation factor GreA [alpha proteobacterium HTCC2255] Length = 156 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF EL+ + +RP +IKAI+EAR +GDLSENAEY +A+ELQ+ EG Sbjct: 1 MDKIPMTPAGFKSADNELKQLKSVDRPSVIKAIAEAREHGDLSENAEYHSARELQSHIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II+ A++ID+S +SG+ + FGATV LV++++ ++ QIVG+ EA++++ ++ Sbjct: 61 RIKELEAIISLAQIIDVSKLSGN-VKFGATVHLVDEDTDAERTLQIVGEHEANIENNQIN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARALIGKE GD + V PGG K+YEIL V +I Sbjct: 120 MNSPIARALIGKEEGDSVEVRTPGGVKSYEILSVKFI 156 >gi|118580935|ref|YP_902185.1| transcription elongation factor GreA [Pelobacter propionicus DSM 2379] gi|229485902|sp|A1AS07|GREA_PELPD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118503645|gb|ABL00128.1| transcription elongation factor GreA [Pelobacter propionicus DSM 2379] Length = 158 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 109/157 (69%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T + ++ +Q+EL+ + ERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSHSIPLTKESYESLQEELKRLIRVERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S M D++ FG+TV+L + S ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELNSKLARAYVVDLSNMKPDKVVFGSTVTLYDTASEEEITYKIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIDIKY 157 >gi|300691215|ref|YP_003752210.1| transcription elongation factor [Ralstonia solanacearum PSI07] gi|299078275|emb|CBJ50923.1| transcription elongation factor [Ralstonia solanacearum PSI07] Length = 158 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+++G + Sbjct: 61 RIQEIESKLSAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 121 SISSPIARALIGKLEGDVATVIAPGGEREYEVLAVKYL 158 >gi|291287665|ref|YP_003504481.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM 12809] gi|290884825|gb|ADD68525.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM 12809] Length = 157 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 119/156 (76%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T++G+ ++++EL + +R I+ AI+EAR++GDLSENAEY AAKE Q + E Sbjct: 1 MDRIPITTEGYARLKKELEKLKTIDRKEIVAAIAEARSHGDLSENAEYDAAKERQGMIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + R +VID ++SGD+I FGATV++ + ++KNY+IVG EA++ +G +S Sbjct: 61 RIAELESKMGRFQVIDTKSLSGDKIVFGATVTIENIETEEQKNYKIVGPDEANISNGTIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K++GD + V APGGE YE+L+V + Sbjct: 121 IMSPLARALVNKKVGDEVLVVAPGGELEYEVLEVKF 156 >gi|296113338|ref|YP_003627276.1| transcription elongation factor GreA [Moraxella catarrhalis RH4] gi|295921032|gb|ADG61383.1| transcription elongation factor GreA [Moraxella catarrhalis RH4] gi|326560322|gb|EGE10710.1| transcription elongation factor GreA [Moraxella catarrhalis 7169] gi|326562019|gb|EGE12349.1| transcription elongation factor GreA [Moraxella catarrhalis 103P14B1] gi|326563561|gb|EGE13820.1| transcription elongation factor GreA [Moraxella catarrhalis 12P80B1] gi|326566359|gb|EGE16509.1| transcription elongation factor GreA [Moraxella catarrhalis BC1] gi|326570169|gb|EGE20214.1| transcription elongation factor GreA [Moraxella catarrhalis BC8] gi|326570907|gb|EGE20931.1| transcription elongation factor GreA [Moraxella catarrhalis BC7] gi|326574514|gb|EGE24456.1| transcription elongation factor GreA [Moraxella catarrhalis 101P30B1] gi|326575898|gb|EGE25821.1| transcription elongation factor GreA [Moraxella catarrhalis CO72] gi|326576362|gb|EGE26271.1| transcription elongation factor GreA [Moraxella catarrhalis O35E] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID + + R+ FG TV L + G K+ Y+IVGD EAD + G + Sbjct: 61 RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G +EIL+V++ Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157 >gi|254476447|ref|ZP_05089833.1| transcription elongation factor GreA [Ruegeria sp. R11] gi|214030690|gb|EEB71525.1| transcription elongation factor GreA [Ruegeria sp. R11] Length = 156 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPTGHAALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGGE++YEIL +++ Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGERSYEILTIVY 155 >gi|289207885|ref|YP_003459951.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix] gi|288943516|gb|ADC71215.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix] Length = 159 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G +K++ EL+ + E+RPR++ AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKTPLTVTGAEKMKAELKKLKGEDRPRVVNAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++ID++ + ++ FG TV L G + Y+IVG+ EAD++ ++ Sbjct: 61 RIRELEGKLSNAQIIDVTALPQTGKVVFGVTVVLEATEDGRQVTYKIVGEDEADIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGKE GD+++V APGGE YEIL+V ++ Sbjct: 121 SVSSPIARALIGKEEGDVVTVQAPGGETEYEILEVRYV 158 >gi|197287221|ref|YP_002153093.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227357084|ref|ZP_03841454.1| transcription elongation factor [Proteus mirabilis ATCC 29906] gi|194684708|emb|CAR46682.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227162776|gb|EEI47739.1| transcription elongation factor [Proteus mirabilis ATCC 29906] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T G +K+++EL + + RP I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTVLGAEKLREELEYLKSVRRPEITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M+ + RI FGATV+L+ ++ +++ Y+IVGD EA+++ L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMTNNGRIIFGATVTLLNVDTEEEQKYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D++ +N PGG+ YE+L V +I Sbjct: 121 SVNSPIARGLIGKELDDVVVINTPGGQVEYEVLNVEYI 158 >gi|189425137|ref|YP_001952314.1| transcription elongation factor GreA [Geobacter lovleyi SZ] gi|238692107|sp|B3E3H5|GREA_GEOLS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189421396|gb|ACD95794.1| transcription elongation factor GreA [Geobacter lovleyi SZ] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 112/157 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + IP+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSNNIPLTKESYEALQEELKRLIREERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D++ + D++ FGATV+L + S ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIEIKY 157 >gi|188532495|ref|YP_001906292.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99] gi|188027537|emb|CAO95384.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99] Length = 160 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTQMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ YEI++V ++ Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYEIVKVEYL 160 >gi|15611867|ref|NP_223518.1| transcription elongation factor GreA [Helicobacter pylori J99] gi|15645485|ref|NP_207660.1| transcription elongation factor GreA [Helicobacter pylori 26695] gi|254779167|ref|YP_003057272.1| transcription elongation factor GreA [Helicobacter pylori B38] gi|54037216|sp|P64276|GREA_HELPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041324|sp|P64275|GREA_HELPY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2313994|gb|AAD07908.1| transcription elongation factor GreA (greA) [Helicobacter pylori 26695] gi|4155364|gb|AAD06376.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR) [Helicobacter pylori J99] gi|254001078|emb|CAX29025.1| Transcription elongation factor GreA (Transcript cleavage factor GreA) [Helicobacter pylori B38] gi|261839321|gb|ACX99086.1| transcription elongation factor GreA [Helicobacter pylori 52] Length = 164 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|188527289|ref|YP_001909976.1| transcription elongation factor GreA [Helicobacter pylori Shi470] gi|238691911|sp|B2USW4|GREA_HELPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|188143529|gb|ACD47946.1| transcription elongation factor GreA [Helicobacter pylori Shi470] gi|308062190|gb|ADO04078.1| transcription elongation factor GreA [Helicobacter pylori Cuz20] Length = 164 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPSKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|197122524|ref|YP_002134475.1| transcription elongation factor GreA [Anaeromyxobacter sp. K] gi|220917309|ref|YP_002492613.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-1] gi|238689850|sp|B4UCU9|GREA_ANASK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|196172373|gb|ACG73346.1| transcription elongation factor GreA [Anaeromyxobacter sp. K] gi|219955163|gb|ACL65547.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-1] Length = 166 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 119/157 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EG Sbjct: 1 MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S Sbjct: 61 RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARALIG+ GD + V +PGGEK YEI V ++ Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157 >gi|15616988|ref|NP_240201.1| transcription elongation factor GreA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681740|ref|YP_002468126.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682295|ref|YP_002468679.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471441|ref|ZP_05635440.1| transcription elongation factor GreA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386814|sp|P57464|GREA_BUCAI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799549|sp|B8D9G7|GREA_BUCA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799550|sp|B8D7R9|GREA_BUCAT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25321409|pir||G84974 transcription elongation factor greA [imported] - Buchnera sp. (strain APS) gi|10039053|dbj|BAB13087.1| transcription elongation factor greA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622028|gb|ACL30184.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624583|gb|ACL30738.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086121|gb|ADP66203.1| transcription elongation factor GreA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086694|gb|ADP66775.1| transcription elongation factor GreA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087279|gb|ADP67359.1| transcription elongation factor GreA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087791|gb|ADP67870.1| transcription elongation factor GreA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 159 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++ IP+T +G +K+++EL+ + RPRII AI+EAR +GDL ENAEY +A+E Q+ E Sbjct: 1 MINLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ +++ID++ +S + R+ FG+TVS++ + +K Y+IVGD E+D + L Sbjct: 61 GRIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR LIGKE+ D++ + PGG+ Y+IL++ +I Sbjct: 121 ISINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159 >gi|15893255|ref|NP_360969.1| transcription elongation factor GreA [Rickettsia conorii str. Malish 7] gi|157829162|ref|YP_001495404.1| transcription elongation factor GreA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933891|ref|YP_001650680.1| transcription elongation factor GreA [Rickettsia rickettsii str. Iowa] gi|238651107|ref|YP_002916965.1| transcription elongation factor GreA [Rickettsia peacockii str. Rustic] gi|15620474|gb|AAL03870.1| transcription elongation factor EF [Rickettsia conorii str. Malish 7] gi|157801643|gb|ABV76896.1| transcription elongation factor GreA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908978|gb|ABY73274.1| transcription elongation factor [Rickettsia rickettsii str. Iowa] gi|238625205|gb|ACR47911.1| transcription elongation factor GreA [Rickettsia peacockii str. Rustic] Length = 206 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 104 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201 >gi|238793013|ref|ZP_04636642.1| Transcription elongation factor greA [Yersinia intermedia ATCC 29909] gi|238727613|gb|EEQ19138.1| Transcription elongation factor greA [Yersinia intermedia ATCC 29909] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITRMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|86158153|ref|YP_464938.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774664|gb|ABC81501.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 166 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 119/157 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EG Sbjct: 1 MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S Sbjct: 61 RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDTESGDQVTYRIVGELEADLKQGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPIARALIG+ GD + V +PGGEK YEI V ++ Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157 >gi|187929112|ref|YP_001899599.1| transcription elongation factor GreA [Ralstonia pickettii 12J] gi|187726002|gb|ACD27167.1| transcription elongation factor GreA [Ralstonia pickettii 12J] Length = 158 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID +++ R+ FGAT+ L + +SG YQIVGD EAD++ G + Sbjct: 61 RIQEIESKLSAAQIIDPASLDAEGRVVFGATIDLEDLDSGKPVTYQIVGDDEADIEIGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+L V ++ Sbjct: 121 SISSPIARALIGKLEGDVATVVAPGGEREYEVLAVKYL 158 >gi|167855522|ref|ZP_02478284.1| transcription elongation factor GreA [Haemophilus parasuis 29755] gi|219871300|ref|YP_002475675.1| transcription elongation factor GreA [Haemophilus parasuis SH0165] gi|167853323|gb|EDS24575.1| transcription elongation factor GreA [Haemophilus parasuis 29755] gi|219691504|gb|ACL32727.1| transcription elongation factor GreA [Haemophilus parasuis SH0165] Length = 158 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +++++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPEIISAITEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A++ID+ ++ ++ FG+TV+L+ N+ + Y+IVGD EA+++ GL+ Sbjct: 61 RIKEIESKLGNAQIIDVKNMINTGKVIFGSTVTLLNVNTDECVTYRIVGDDEANIKDGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D + + PGG ++I++V +I Sbjct: 121 SVNSPIARGLVGKEIDDNVHIQTPGGNVEFDIIKVEYI 158 >gi|89070192|ref|ZP_01157520.1| transcription elongation factor GreA [Oceanicola granulosus HTCC2516] gi|89044208|gb|EAR50359.1| transcription elongation factor GreA [Oceanicola granulosus HTCC2516] Length = 156 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 88/157 (56%), Positives = 122/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GFDK+ EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFDKLDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVID + MSG I FGATV LV++++ ++K+YQIVG+ EAD++ G ++ Sbjct: 61 RIKELEGVISLAEVIDPTRMSG-AIKFGATVELVDEDTDEEKSYQIVGEYEADIERGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ARALIGKE GD + V PGG+K YE+++V ++ Sbjct: 120 MKSPLARALIGKEEGDSVEVKTPGGDKAYEVVKVSYV 156 >gi|85705718|ref|ZP_01036815.1| transcription elongation factor GreA [Roseovarius sp. 217] gi|85669708|gb|EAQ24572.1| transcription elongation factor GreA [Roseovarius sp. 217] Length = 156 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 83/157 (52%), Positives = 121/157 (77%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA ++ GL++ Sbjct: 61 RIKELEGILSLAEVIDPAKLSG-AIKFGATVTLVDEDTDEERTYQIVGEHEASIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SPIARALIGKE GD + V PGG++ YE+++V +I Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRAYEVIKVAYI 156 >gi|297539177|ref|YP_003674946.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297258524|gb|ADI30369.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 160 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V +IPVT KG +++++EL + +RP +I+AI+EARA GDLSENAEY+AAKE Q+ EG Sbjct: 3 VTQIPVTVKGAEQLKEELLRLRSVDRPWVIQAIAEARAQGDLSENAEYEAAKERQSFIEG 62 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E ++ A +ID ST+ D R FG+TV + + +SG YQIVGD EAD+++G + Sbjct: 63 RIAEVEAKLSNAMIIDPSTLHADGRCVFGSTVRIEDLDSGSIITYQIVGDDEADIKNGKI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPI+R LIGK GD+ V APGG K YEIL+V +I Sbjct: 123 SVSSPISRGLIGKSEGDVAEVMAPGGVKEYEILEVQYI 160 >gi|86139026|ref|ZP_01057597.1| transcription elongation factor GreA [Roseobacter sp. MED193] gi|85824257|gb|EAQ44461.1| transcription elongation factor GreA [Roseobacter sp. MED193] Length = 156 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+TS G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTSAGHTALEAELKNLKSVERPTIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+V++GL++ Sbjct: 61 RIKELEGILSLADVIDPAKLSGS-IKFGAKVTLVDEDTDEEKTWQIVGEHEANVEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG + YEIL + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRGYEILTIHY 155 >gi|326559681|gb|EGE10092.1| transcription elongation factor GreA [Moraxella catarrhalis 46P47B1] Length = 158 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID + + R+ FG TV L + G ++ Y+IVGD EAD + G + Sbjct: 61 RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGARRRYKIVGDDEADFKVGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G +EIL+V++ Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157 >gi|77919210|ref|YP_357025.1| transcription elongation factor GreA [Pelobacter carbinolicus DSM 2380] gi|123770456|sp|Q3A452|GREA_PELCD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|77545293|gb|ABA88855.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM 2380] Length = 158 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 107/158 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T +G+ +Q EL+ + ERP++++ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPMTEEGYRSLQDELKHLIRVERPKVVQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + I RAEVI + D+I FGA+V+L + ++ + Y+IVG+ EAD++ G + Sbjct: 61 GRIKELNDKIARAEVIKPGDVVTDKIVFGASVTLFDVDTDSEVTYKIVGEDEADLKHGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+ RALIG L D + + P G K YE++ + ++ Sbjct: 121 SVTSPVGRALIGHRLDDEVRIKVPSGLKIYEVVNIAYM 158 >gi|308063340|gb|ADO05227.1| transcription elongation factor GreA [Helicobacter pylori Sat464] Length = 164 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|317011079|gb|ADU84826.1| transcription elongation factor GreA [Helicobacter pylori SouthAfrica7] Length = 164 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID S ++ +++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPSVLTHHKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|254512527|ref|ZP_05124594.1| transcription elongation factor GreA [Rhodobacteraceae bacterium KLH11] gi|221536238|gb|EEE39226.1| transcription elongation factor GreA [Rhodobacteraceae bacterium KLH11] Length = 156 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG Sbjct: 1 MEKIPMTPAGNAALEAELKNLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VID S ++G I FGA V+LV++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVIDPSKLAG-AIKFGAKVTLVDEDTDEEKTWQIVGEYEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG ++YE+L + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIQY 155 >gi|294340422|emb|CAZ88803.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Thiomonas sp. 3As] Length = 157 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+ Sbjct: 4 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S Sbjct: 64 IEGKLGTAQIIDPSELQADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALIGKE G++ V APGG + YEIL V + Sbjct: 124 PIARALIGKESGEVAQVAAPGGVRHYEILAVHY 156 >gi|126734602|ref|ZP_01750348.1| transcription elongation factor GreA [Roseobacter sp. CCS2] gi|126715157|gb|EBA12022.1| transcription elongation factor GreA [Roseobacter sp. CCS2] Length = 156 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GFDK+ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTQAGFDKLDAELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID + +SG I FGATV+LV++++ ++K YQIVG+ EAD+++G ++ Sbjct: 61 RVKELEGVISLADVIDPTKLSG-TIKFGATVALVDEDTDEEKTYQIVGEYEADIENGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP++RALIGK+ GD + V PGG ++YEIL + + Sbjct: 120 MKSPLSRALIGKDEGDSVDVRTPGGVRSYEILSIAY 155 >gi|109898530|ref|YP_661785.1| transcription elongation factor GreA [Pseudoalteromonas atlantica T6c] gi|109700811|gb|ABG40731.1| transcription elongation factor GreA [Pseudoalteromonas atlantica T6c] Length = 158 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+KG + +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MTQYPMTAKGAEMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ ++ID++ M + ++ FG TV+++ S ++ Y+IVGD EAD+++ L+ Sbjct: 61 RIQDIEGKLSNVQIIDVTKMTNTGKVIFGTTVTILNLQSDEEITYKIVGDDEADIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK+L D++++ P G +EI++V ++ Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158 >gi|21672645|ref|NP_660712.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008517|sp|Q8K9G6|GREA_BUCAP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21623280|gb|AAM67923.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 159 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++ IP+T +G +K+++EL + +RPRI I+EAR +GDL ENAEY +A+E Q+ E Sbjct: 1 MINLIPMTVRGAEKLREELEQLKNVKRPRITVQIAEARKHGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ ++ +++IDI+ +S D R+ FG+TV+++ + YQIVGD E+D + L Sbjct: 61 GRIQEIESKLSNSQIIDITKISNDGRVVFGSTVTILNIKNNAVFTYQIVGDDESDFKKNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SP++R LIGK + I ++ P G Y+IL++ +I Sbjct: 121 ISINSPMSRGLIGKTVNTIAIIHTPSGNVKYKILKIDYI 159 >gi|163732327|ref|ZP_02139773.1| transcription elongation factor GreA [Roseobacter litoralis Och 149] gi|161394625|gb|EDQ18948.1| transcription elongation factor GreA [Roseobacter litoralis Och 149] Length = 156 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 1 MDKIPMTRKGHTDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++ Sbjct: 61 RIKELEGVLGLAEVIDPSKMSG-TIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGEK YE+L++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGEKAYEVLKIVY 155 >gi|17546241|ref|NP_519643.1| transcription elongation factor GreA [Ralstonia solanacearum GMI1000] gi|25452993|sp|Q8XZ82|GREA_RALSO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|17428538|emb|CAD15224.1| probable transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum GMI1000] gi|299066489|emb|CBJ37679.1| transcription elongation factor [Ralstonia solanacearum CMR15] Length = 158 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A+VID + + D RI FGAT+ L + +SG YQIVGD EAD+ SG + Sbjct: 61 RILEIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158 >gi|238783524|ref|ZP_04627546.1| Transcription elongation factor greA [Yersinia bercovieri ATCC 43970] gi|238797561|ref|ZP_04641058.1| Transcription elongation factor greA [Yersinia mollaretii ATCC 43969] gi|238715579|gb|EEQ07569.1| Transcription elongation factor greA [Yersinia bercovieri ATCC 43970] gi|238718558|gb|EEQ10377.1| Transcription elongation factor greA [Yersinia mollaretii ATCC 43969] Length = 158 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G DK+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGADKLREELDFLKGVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ + +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDIEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|262371951|ref|ZP_06065230.1| transcription elongation factor GreB [Acinetobacter junii SH205] gi|262311976|gb|EEY93061.1| transcription elongation factor GreB [Acinetobacter junii SH205] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + +VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGACQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI+ V ++ Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158 >gi|239948368|ref|ZP_04700121.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes scapularis] gi|239922644|gb|EER22668.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes scapularis] Length = 206 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 104 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201 >gi|83747766|ref|ZP_00944800.1| Transcription elongation factor greA (transcription cleavage factor) [Ralstonia solanacearum UW551] gi|83725538|gb|EAP72682.1| Transcription elongation factor greA (transcription cleavage factor) [Ralstonia solanacearum UW551] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG Sbjct: 1 MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G + Sbjct: 61 RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ +V APGGE+ YE+ V ++ Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158 >gi|108563274|ref|YP_627590.1| transcription elongation factor GreA [Helicobacter pylori HPAG1] gi|207092077|ref|ZP_03239864.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_AG0C1] gi|208434775|ref|YP_002266441.1| transcription elongation factor [Helicobacter pylori G27] gi|210135059|ref|YP_002301498.1| transcription elongation factor GreA [Helicobacter pylori P12] gi|123373738|sp|Q1CT06|GREA_HELPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238058234|sp|B6JM90|GREA_HELP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238058235|sp|B5Z7M6|GREA_HELPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|107837047|gb|ABF84916.1| transcription elongation factor [Helicobacter pylori HPAG1] gi|208432704|gb|ACI27575.1| transcription elongation factor [Helicobacter pylori G27] gi|210133027|gb|ACJ08018.1| transcription elongation factor [Helicobacter pylori P12] gi|317009127|gb|ADU79707.1| transcription elongation factor GreA [Helicobacter pylori India7] gi|317012671|gb|ADU83279.1| transcription elongation factor GreA [Helicobacter pylori Lithuania75] Length = 164 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|82701614|ref|YP_411180.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] gi|82409679|gb|ABB73788.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T G K++ EL + +RP +I AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MSTIPLTVTGAGKLRAELHEMKTVQRPAVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++ID +T+ D FGAT+ L + S YQIVGD EAD++ G + Sbjct: 61 RIAELESKLSNAQIIDPATLDADGACVFGATIDLEDVESATTVTYQIVGDDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPI+RALIGK GD+ V APGG + YEIL V +I Sbjct: 121 SISSPISRALIGKYPGDVAEVMAPGGVREYEILDVRYI 158 >gi|194098470|ref|YP_002001530.1| transcription elongation factor GreA [Neisseria gonorrhoeae NCCP11945] gi|291043955|ref|ZP_06569671.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2] gi|293399156|ref|ZP_06643321.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62] gi|193933760|gb|ACF29584.1| GreA [Neisseria gonorrhoeae NCCP11945] gi|291012418|gb|EFE04407.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2] gi|291610570|gb|EFF39680.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62] gi|317164152|gb|ADV07693.1| transcription elongation factor GreA [Neisseria gonorrhoeae TCDC-NG08107] Length = 174 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 17 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 76 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 77 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 136 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 137 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 174 >gi|297380066|gb|ADI34953.1| transcription elongation factor GreA [Helicobacter pylori v225d] Length = 164 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|226951540|ref|ZP_03822004.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ATCC 27244] gi|294651182|ref|ZP_06728514.1| transcription elongation factor GreA [Acinetobacter haemolyticus ATCC 19194] gi|226837732|gb|EEH70115.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ATCC 27244] gi|292822935|gb|EFF81806.1| transcription elongation factor GreA [Acinetobacter haemolyticus ATCC 19194] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGACQVIDVKDLEKNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI+ V ++ Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158 >gi|149913254|ref|ZP_01901788.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b] gi|149813660|gb|EDM73486.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b] Length = 156 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T +G ++ EL+ + EERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRRGHTALEVELKQLKSEERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+RAEVID + + G I FGATV+LV++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGVISRAEVIDPTKLKGP-IKFGATVTLVDEDTDEEKTWQIVGEYEANIENGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD + V PGGEK+YE+L++ +I Sbjct: 120 MKSPIARALIGKEAGDSVEVRTPGGEKSYEVLKIEYI 156 >gi|94500165|ref|ZP_01306699.1| transcription elongation factor GreA [Oceanobacter sp. RED65] gi|94427738|gb|EAT12714.1| transcription elongation factor GreA [Oceanobacter sp. RED65] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++EL ++ ERP++IKAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQKVPMTVDGEKALREELDQLKKVERPKVIKAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++T+ ++ FG TV L++ N+ ++K YQIVG+ EAD+ +G + Sbjct: 61 RIQDIEGKLSNAQVIDVTTLPQTGKVIFGTTVRLIDANTDEEKQYQIVGEDEADIPNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIARALIGKE GD++ V P GE YEI QVL++ Sbjct: 121 SAGSPIARALIGKEEGDVVVVKVPNGEIEYEIDQVLYL 158 >gi|238761759|ref|ZP_04622733.1| Transcription elongation factor greA [Yersinia kristensenii ATCC 33638] gi|238699873|gb|EEP92616.1| Transcription elongation factor greA [Yersinia kristensenii ATCC 33638] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FG+TV ++ S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158 >gi|119383180|ref|YP_914236.1| transcription elongation factor GreA [Paracoccus denitrificans PD1222] gi|166200684|sp|A1AZ46|GREA_PARDP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119372947|gb|ABL68540.1| transcription elongation factor GreA [Paracoccus denitrificans PD1222] Length = 156 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 124/157 (78%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G+D++ +ELR + +RP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGYDQLDEELRELRSVQRPAVIRAIAEAREHGDLSENAEYHAAREKQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++RAEVID + ++G I FGATV+LV+++S +++ YQIVG+ EAD++ GL++ Sbjct: 61 RIKELEMILSRAEVIDPTRLNGS-IKFGATVTLVDEDSEEERTYQIVGEAEADLERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGG K+YEI+ + ++ Sbjct: 120 IRSPLARALIGKDEGDSIEVVTPGGGKSYEIISIRYV 156 >gi|121998553|ref|YP_001003340.1| transcription elongation factor GreA [Halorhodospira halophila SL1] gi|166200666|sp|A1WXX6|GREA_HALHL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|121589958|gb|ABM62538.1| transcription elongation factor GreA [Halorhodospira halophila SL1] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G +K+++EL + E+RPR+I+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKIPLTIRGAEKLREELHRLKHEDRPRVIQAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + +I FGATV+L + ++ + YQIVG+ EAD++ L+ Sbjct: 61 RIQEIEGKLSNAQIIDPAAVQAAPKIVFGATVALEDTDTEETVTYQIVGEDEADIKQHLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GD V APGGE+TYEI++V + Sbjct: 121 SVNSPIARALIGKEEGDEAVVQAPGGERTYEIVEVRY 157 >gi|88705675|ref|ZP_01103385.1| Transcription elongation factor greA [Congregibacter litoralis KT71] gi|88700188|gb|EAQ97297.1| Transcription elongation factor greA [Congregibacter litoralis KT71] Length = 158 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T++G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKVPMTAQGEKALREELEQLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ + ++ FG TV L+ S D Y+IVGD EAD + L+ Sbjct: 61 RIMDIEGKLSHAQVIDVTAIPPTGKVIFGVTVDLINVESDDTVTYRIVGDDEADAKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD++ V APGG++ YEI QV I Sbjct: 121 SVNSPIARALIGKEEGDVVVVRAPGGDREYEIDQVRHI 158 >gi|84515779|ref|ZP_01003140.1| transcription elongation factor GreA [Loktanella vestfoldensis SKA53] gi|84510221|gb|EAQ06677.1| transcription elongation factor GreA [Loktanella vestfoldensis SKA53] Length = 156 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GFDKI EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPLTRAGFDKIDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID S SG + FGATV LV++++ ++K Y IVG+ EAD++SG ++ Sbjct: 61 RVKELEGVISLADVIDPSKFSGP-VKFGATVLLVDEDTDEEKTYLIVGEYEADIESGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK+ GD I V+ PGG ++YEIL++ + Sbjct: 120 MKSPLARALIGKDEGDSIEVSTPGGVRSYEILKITY 155 >gi|255020830|ref|ZP_05292886.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC 51756] gi|254969621|gb|EET27127.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 84/159 (52%), Positives = 115/159 (72%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DKIP+T G ++++EL+ + ++RP +I+AI+EARA GDLSENAEY AAKE Q E Sbjct: 1 MSDKIPMTVVGAQRLREELQRLKSQDRPAVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ + RA++ID +++ D RI FGATV L + + G YQIVGD EAD++ Sbjct: 61 GRIREIEDFLARAQIIDPRSLNTDGRIVFGATVELEDSD-GKAITYQIVGDAEADIKENK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP+ARALIGK GD + VNAPGG + Y IL V ++ Sbjct: 120 ISISSPLARALIGKHEGDSVEVNAPGGIREYSILGVRYL 158 >gi|149927094|ref|ZP_01915352.1| transcription elongation factor GreA [Limnobacter sp. MED105] gi|149824315|gb|EDM83535.1| transcription elongation factor GreA [Limnobacter sp. MED105] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T KG +K++QEL + +RP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MATIPLTVKGAEKLKQELHRLKTIDRPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + R+ FGATV L + +G YQIVGD EAD+++GL+ Sbjct: 61 RIKEIEGKMSNAQIIDPTNVDAEGRVVFGATVKLEDIEAGATVEYQIVGDDEADIKAGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ V APGG + YE+L+V +I Sbjct: 121 SISSPIARALIGKYEGDVAHVQAPGGLREYEVLEVKYI 158 >gi|157965027|ref|YP_001499851.1| transcription elongation factor GreA [Rickettsia massiliae MTU5] gi|157844803|gb|ABV85304.1| Transcription elongation factor GreA [Rickettsia massiliae MTU5] Length = 198 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 37 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 96 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ +K Y IVG+ EAD+ V Sbjct: 97 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEKVTYIIVGEYEADITRKRV 156 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 157 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 193 >gi|119944570|ref|YP_942250.1| transcription elongation factor GreA [Psychromonas ingrahamii 37] gi|189042245|sp|A1ST36|GREA_PSYIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119863174|gb|ABM02651.1| transcription elongation factor GreA [Psychromonas ingrahamii 37] Length = 159 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+ G K++ EL+ + RPRI+KAI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MVQYPMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A +IDI+ ++ + ++ FGATV++V + + Y+IVGD EA+++ L+ Sbjct: 61 RIQDIEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+AR LIGK L D IS+ PGG YEI+ V +I Sbjct: 121 SVSSPLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI 158 >gi|224823861|ref|ZP_03696970.1| transcription elongation factor GreA [Lutiella nitroferrum 2002] gi|224604316|gb|EEG10490.1| transcription elongation factor GreA [Lutiella nitroferrum 2002] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNKVPLTLRGAELLKEELQRLKSVERPAVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A++I+ S + RI FG TV L++ + D+ YQIVGD EAD++ V Sbjct: 61 RIAELEGKLSNAQIINPSELDAEGRIVFGTTVELMDLETEDEVTYQIVGDDEADIKFAKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD+ V APGG + YEIL V +I Sbjct: 121 SVNSPIARALIGKEAGDVAEVMAPGGIREYEILDVKYI 158 >gi|255261573|ref|ZP_05340915.1| transcription elongation factor GreA [Thalassiobium sp. R2A62] gi|255103908|gb|EET46582.1| transcription elongation factor GreA [Thalassiobium sp. R2A62] Length = 156 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T G+D + EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTKAGYDALNAELKHLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID S MSG FGA V LV++++ ++K+YQIVG+ EAD+++G ++ Sbjct: 61 RVKELEGVISLADVIDTSKMSG-TAKFGAMVKLVDEDTDEEKSYQIVGEHEADIENGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARALIGK+ GD + V PGG K+YEIL++ + Sbjct: 120 MKSPLARALIGKDEGDSVEVRTPGGGKSYEILEINY 155 >gi|259907033|ref|YP_002647389.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96] gi|224962655|emb|CAX54110.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96] gi|283476829|emb|CAY72667.1| Transcription elongation factor greA [Erwinia pyrifoliae DSM 12163] gi|310766245|gb|ADP11195.1| Transcription elongation factor GreA [Erwinia sp. Ejp617] Length = 160 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD + Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SP+AR L+GK D+ + PGG+ Y+I++V ++ Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYDIIKVEYL 160 >gi|326409521|gb|ADZ66586.1| transcription elongation factor GreA [Brucella melitensis M28] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 99/152 (65%), Positives = 133/152 (87%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEGR+ EL Sbjct: 1 MTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +SISSPI Sbjct: 61 EDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK GD I VNAPGG ++YEI+ + ++ Sbjct: 121 ARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 152 >gi|114562155|ref|YP_749668.1| transcription elongation factor GreA [Shewanella frigidimarina NCIMB 400] gi|114333448|gb|ABI70830.1| transcription elongation factor GreA [Shewanella frigidimarina NCIMB 400] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ + + R+ FG TV+++ ++ + Y+IVGD EAD++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG YEI++V ++ Sbjct: 121 SVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 158 >gi|146313249|ref|YP_001178323.1| transcription elongation factor GreA [Enterobacter sp. 638] gi|145320125|gb|ABP62272.1| transcription elongation factor GreA [Enterobacter sp. 638] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIISAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDI+ + R+ FGA+V ++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDITKIPNTGRVIFGASVKVLNLDNDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE D++ + PGGE +EI++V ++ Sbjct: 121 SVNSPIARGLIGKEEEDVVVIRTPGGEVEFEIIKVEYL 158 >gi|146278508|ref|YP_001168667.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17025] gi|166200695|sp|A4WVE8|GREA_RHOS5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145556749|gb|ABP71362.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17025] Length = 156 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKIPMTRAGFAALDDELKLLKTVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +++ AEVID + +SG I FGATV+++++ + ++K YQIVG+ EAD+++GL++ Sbjct: 61 RIKELEALLSLAEVIDPARLSGS-IKFGATVTILDEETEEEKTYQIVGEAEADIENGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGGE+ YE++ V ++ Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156 >gi|264679349|ref|YP_003279256.1| Kelongation factor GreA [Comamonas testosteroni CNB-2] gi|299532308|ref|ZP_07045701.1| Kelongation factor GreA [Comamonas testosteroni S44] gi|262209862|gb|ACY33960.1| Kelongation factor GreA [Comamonas testosteroni CNB-2] gi|298719716|gb|EFI60680.1| Kelongation factor GreA [Comamonas testosteroni S44] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EG Sbjct: 1 MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + G R+ FGATV L +++SG YQIVG+ EAD++ GL+ Sbjct: 61 RILEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSPVTYQIVGEDEADLKHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SSPIARALIGKE GD V APGGE+ YEI+ V ++ Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYV 158 >gi|261856155|ref|YP_003263438.1| transcription elongation factor GreA [Halothiobacillus neapolitanus c2] gi|261836624|gb|ACX96391.1| transcription elongation factor GreA [Halothiobacillus neapolitanus c2] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 76/156 (48%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T+ G K++ EL+ + ERPRII+AI+EAR GDL ENAEY AA+E Q EGR+ Sbjct: 2 QTPMTAAGAAKLEAELKQLRGVERPRIIQAIAEARDLGDLKENAEYHAAREEQGFVEGRI 61 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A +ID+S + D++ FGATV +++ +S ++ Y+IVGD EAD++S ++S+ Sbjct: 62 KEIEAKLSHANIIDVSRLPPSDKVIFGATVRVLDVDSDEEITYKIVGDDEADIKSNMISV 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARAL+GK LGD ++V+APGG++ +EI +V +I Sbjct: 122 HSPIARALVGKSLGDEVTVDAPGGKRVFEITEVQYI 157 >gi|332283361|ref|YP_004415272.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7] gi|330427314|gb|AEC18648.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTARGAERLQAELHRLKTIERPEVINAIAEARAQGDLSENAEYDAARERQAFVEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A++ID ST+ + FGATV + + SG++ YQIVGD EAD++S L+ Sbjct: 61 RIQELEGTLSNAQIIDPSTLDVEGKAVFGATVEIEDLESGERVKYQIVGDVEADIRSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIG+ GD++ V AP G + YE+L V ++ Sbjct: 121 SVSSPVARALIGRGQGDVVEVKAPAGIREYEVLNVSYL 158 >gi|332978289|gb|EGK15017.1| transcription elongation factor GreA [Psychrobacter sp. 1501(2011)] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPQGHAALEAELKQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID +T+ R+ FG TV + ++ ++K YQIVGD EAD ++ + Sbjct: 61 RIRDIEAKLSGAQVIDPTTLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G +EI++V++ Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGVVEFEIIEVIY 157 >gi|229587229|ref|YP_002845730.1| transcription elongation factor GreA [Rickettsia africae ESF-5] gi|228022279|gb|ACP53987.1| Transcription elongation factor GreA [Rickettsia africae ESF-5] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 24 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 83 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 84 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 143 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ + + Sbjct: 144 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTIEY 180 >gi|308183020|ref|YP_003927147.1| transcription elongation factor GreA [Helicobacter pylori PeCan4] gi|308065205|gb|ADO07097.1| transcription elongation factor GreA [Helicobacter pylori PeCan4] Length = 164 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156 >gi|285018124|ref|YP_003375835.1| transcription elongation factor grea (transcript cleavage factor grea) protein [Xanthomonas albilineans GPE PC73] gi|283473342|emb|CBA15847.1| probable transcription elongation factor grea (transcript cleavage factor grea) protein [Xanthomonas albilineans] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 76/154 (49%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ + Sbjct: 4 PITLQGAQRLREELDHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQGFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE+ ++ AEVIDIS ++ G ++ FGATV+L + + ++K YQ+VGD EAD++ GL++ISS Sbjct: 64 LESELSHAEVIDISKLAVGSKVVFGATVTLADVETDEEKRYQLVGDLEADIKLGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK GD + ++AP G + YEI+ V ++ Sbjct: 124 PLARALIGKMEGDSVGIDAPAGHREYEIVSVQYL 157 >gi|126740555|ref|ZP_01756242.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6] gi|126718356|gb|EBA15071.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6] Length = 156 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 80/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPAGHTAMESELKNLKSVERPSIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGIIGLADVIDPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGGE++YEIL++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155 >gi|148652641|ref|YP_001279734.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1] gi|189042246|sp|A5WDP3|GREA_PSYWF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148571725|gb|ABQ93784.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID +T+ R+ FG TV + ++ ++K YQIVGD EAD ++ + Sbjct: 61 RIRDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G +EI++V++ Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY 157 >gi|158522232|ref|YP_001530102.1| transcription elongation factor GreA [Desulfococcus oleovorans Hxd3] gi|158511058|gb|ABW68025.1| transcription elongation factor GreA [Desulfococcus oleovorans Hxd3] Length = 164 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 113/155 (72%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+ IP+T +G++K+ QEL + ERP I+AI EARA+GDLSENAE+ AAKE Q EG Sbjct: 10 VETIPITRQGYEKLNQELSRLKAVERPANIRAIEEARAHGDLSENAEFHAAKEKQGFIEG 69 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LE+ + A +ID ST++ DR FG T+ L ++GD+ YQ+VG E+++ +GL+S Sbjct: 70 RINDLEHKLASANIIDPSTLTKDRAVFGCTIRLESIDTGDEVEYQLVGPDESNIDNGLIS 129 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++SP+ +A++GK GD + + APGG+++YE++++ Sbjct: 130 VTSPLGKAILGKVPGDEVVLQAPGGKRSYELIEIR 164 >gi|322380197|ref|ZP_08054428.1| transcription elongation factor GreA [Helicobacter suis HS5] gi|321147363|gb|EFX42032.1| transcription elongation factor GreA [Helicobacter suis HS5] Length = 161 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 104/154 (67%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQAFIEARI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++L+GK GD ++V P GE +EIL + + Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155 >gi|329910107|ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] gi|327546260|gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium IMCC9480] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T G +++EL + +ERP II AISEARA GDLSENAEY AAKE Q+ EG Sbjct: 1 MSTVPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE + +++ID T+ D RI FG+TV L + +GDK YQIVG EAD++ V Sbjct: 61 RISDLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK GD++ V AP G + YE+L+V +I Sbjct: 121 SVTSPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158 >gi|262376633|ref|ZP_06069861.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] gi|262308343|gb|EEY89478.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL + +RPRI +I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELHQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQVIDVKELEHNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + +N P GE YEI++V ++ Sbjct: 121 SVNSPIARGLLGKNEGDDVKINTPNGEVEYEIVKVEYL 158 >gi|284006659|emb|CBA71921.1| transcription elongation factor [Arsenophonus nasoniae] Length = 179 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 22 MKQIPMTVRGAEKLRKELEFLKNIRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 81 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ M R+ FGATV++ + + + Y+IVGD EAD++ L+ Sbjct: 82 RIQEIEAKLSHAQVIDVTKMKNEGRVIFGATVTVFNVTTNEDQIYRIVGDDEADIKENLI 141 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK + D+ + PGGE YEIL+V +I Sbjct: 142 SVNSPIARGLIGKTMDDVAVITTPGGEVEYEILKVEYI 179 >gi|309785509|ref|ZP_07680140.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 1617] gi|25321427|pir||D91136 transcription elongation factor GreA ECs4060 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25321434|pir||G85981 transcription elongation factor greA [similarity] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517796|gb|AAG58315.1|AE005547_1 transcription elongation factor: cleaves 3' nucleotide of paused mRNA [Escherichia coli O157:H7 str. EDL933] gi|606119|gb|AAA57982.1| greA [Escherichia coli str. K-12 substr. MG1655] gi|13363533|dbj|BAB37483.1| transcription elongation factor GreA [Escherichia coli O157:H7 str. Sakai] gi|73857195|gb|AAZ89902.1| transcription elongation factor [Shigella sonnei Ss046] gi|81242643|gb|ABB63353.1| transcription elongation factor [Shigella dysenteriae Sd197] gi|81246992|gb|ABB67700.1| transcription elongation factor [Shigella boydii Sb227] gi|209758228|gb|ACI77426.1| transcription elongation factor GreA [Escherichia coli] gi|209758230|gb|ACI77427.1| transcription elongation factor GreA [Escherichia coli] gi|209758232|gb|ACI77428.1| transcription elongation factor GreA [Escherichia coli] gi|209758234|gb|ACI77429.1| transcription elongation factor GreA [Escherichia coli] gi|209758236|gb|ACI77430.1| transcription elongation factor GreA [Escherichia coli] gi|308926629|gb|EFP72105.1| transcription elongation factor GreA domain protein [Shigella dysenteriae 1617] gi|323154395|gb|EFZ40596.1| transcription elongation factor GreA domain protein [Escherichia coli EPECa14] gi|323173559|gb|EFZ59188.1| transcription elongation factor GreA domain protein [Escherichia coli LT-68] gi|327251272|gb|EGE62961.1| transcription elongation factor GreA domain protein [Escherichia coli STEC_7v] Length = 153 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++ Sbjct: 1 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++SP Sbjct: 61 EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKE D++ + PGGE +E+++V ++ Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153 >gi|73541862|ref|YP_296382.1| transcription elongation factor GreA [Ralstonia eutropha JMP134] gi|72119275|gb|AAZ61538.1| transcription elongation factor GreA [Ralstonia eutropha JMP134] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL + ERP +I AI+EARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPITKRGAELLKEELHRLKAVERPAVINAIAEARAQGDLSENAEYDAAKEKQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VID + + D RI FGATV L + SG +YQIVGD EAD+ SG + Sbjct: 61 RILEVESKLSAAQVIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLDSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V APGGE+ YE++ V ++ Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYV 158 >gi|163738891|ref|ZP_02146304.1| transcription elongation factor GreA [Phaeobacter gallaeciensis BS107] gi|163741863|ref|ZP_02149253.1| transcription elongation factor GreA [Phaeobacter gallaeciensis 2.10] gi|161385036|gb|EDQ09415.1| transcription elongation factor GreA [Phaeobacter gallaeciensis 2.10] gi|161387696|gb|EDQ12052.1| transcription elongation factor GreA [Phaeobacter gallaeciensis BS107] Length = 156 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG Sbjct: 1 MEKIPMTPTGHAALETELKTLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++ Sbjct: 61 RIKELEGILSLADVINPAKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGG++ YEIL++++ Sbjct: 120 IRSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155 >gi|224437954|ref|ZP_03658896.1| transcription elongation factor GreA [Helicobacter cinaedi CCUG 18818] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 107/151 (70%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ EL Sbjct: 1 MTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSPI Sbjct: 61 GLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+GK+ GD +S+ P GE +EIL+V + Sbjct: 121 AKALMGKKQGDEVSIMLPSGENEFEILEVFY 151 >gi|187477431|ref|YP_785455.1| transcription elongation factor [Bordetella avium 197N] gi|115422017|emb|CAJ48539.1| transcription elongation factor [Bordetella avium 197N] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +++ QEL + ERP +I AI+EARA GDLSENAEY AA+E Q EG Sbjct: 1 MSAIPLTVRGAERLNQELHRLKTIERPAVINAIAEARAQGDLSENAEYDAARERQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +ID S + R FGATV + + SGD+ YQIVGD EAD++S L+ Sbjct: 61 RIAELEGTLSNAHLIDPSALDAEGRAVFGATVEIEDLGSGDRLTYQIVGDVEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSP+ARALIGK GD++ V AP G + YE++ V ++ Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGLREYEVIGVRYL 158 >gi|121604678|ref|YP_982007.1| transcription elongation factor GreA [Polaromonas naphthalenivorans CJ2] gi|229485903|sp|A1VN58|GREA_POLNA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120593647|gb|ABM37086.1| transcription elongation factor GreA [Polaromonas naphthalenivorans CJ2] Length = 158 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EG Sbjct: 1 MATLPITKRGAEKLKAELHNLKTVQRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID +T +G R+ FG+TV L ++ +GD YQIVG+ EAD++ GLV Sbjct: 61 RIQEIEGKLSAAQVIDPTTFETGTRVVFGSTVKLEDEATGDSVTYQIVGEDEADIKLGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +I SPIARALIGK+ GD V APGG + YEI+ VL+I Sbjct: 121 NIGSPIARALIGKDEGDSAEVQAPGGIRRYEIVTVLYI 158 >gi|117926297|ref|YP_866914.1| transcription elongation factor GreA [Magnetococcus sp. MC-1] gi|166200673|sp|A0LC15|GREA_MAGSM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|117610053|gb|ABK45508.1| transcription elongation factor GreA [Magnetococcus sp. MC-1] Length = 157 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 120/157 (76%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+P+T +G ++++EL+ R+ +R RII AI EARA+GDLSENAEY AAKE Q+ NE Sbjct: 1 MNPKVPMTLEGAQQLKEELKRRKTTDRKRIIAAIEEARAHGDLSENAEYHAAKEQQSFNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A+LE ++ AEVID S ++ RI FGA V+++++++ ++ Y IVGD+EAD++ G + Sbjct: 61 GRIAKLEGMLASAEVIDTSRLNSSRIVFGAKVTVIDEDTEEESTYHIVGDEEADLEKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSP+AR +IGKE GD I V APGG + +E++++ + Sbjct: 121 SISSPMARGMIGKEAGDSIEVRAPGGTRHFEVVEITF 157 >gi|89900792|ref|YP_523263.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] gi|89345529|gb|ABD69732.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] Length = 180 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY+ AK+ Q EGR+ E Sbjct: 27 PITKRGAEKLKAELHKLKTVDRPWVINAIAEARAQGDLSENAEYEVAKDKQGFIEGRIQE 86 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E ++ +VID + R+ FGATV L ++ SG YQIVG+ EAD++ GL++I S Sbjct: 87 IEGKLSVCQVIDPVELHAEGRVVFGATVQLEDEASGAAVTYQIVGEDEADIKLGLINIGS 146 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARALIGKE GD V APGG K YE++ V ++ Sbjct: 147 PIARALIGKEQGDTAEVQAPGGIKHYEVVAVSYV 180 >gi|217033071|ref|ZP_03438538.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128] gi|298736570|ref|YP_003729096.1| transcription elongation factor GreA [Helicobacter pylori B8] gi|216945215|gb|EEC23900.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128] gi|298355760|emb|CBI66632.1| transcription elongation factor GreA [Helicobacter pylori B8] Length = 164 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+ GL+S Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESAPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD +S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDTVSIQLPNGESDFEILDIYY 156 >gi|332160070|ref|YP_004296647.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664300|gb|ADZ40944.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862039|emb|CBX72205.1| transcription elongation factor greA [Yersinia enterocolitica W22703] Length = 158 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158 >gi|258545601|ref|ZP_05705835.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC 15826] gi|258519153|gb|EEV88012.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC 15826] Length = 160 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV KIP+T KG ++ EL + EERPR+I+AI+EARA+GDL ENAEY AA+E Q E Sbjct: 1 MVAKIPMTKKGEQALRAELEKLKSEERPRVIEAIAEARAHGDLKENAEYHAAREQQGFVE 60 Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ ELE+ ++ A VID++T+ ++ FG TV L + +SG++ Y+IVG+ EAD+++GL Sbjct: 61 GRIRELEHKLSHANVIDVTTLPQNGKVVFGTTVELEDSDSGEEMTYKIVGEDEADIKAGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SPIARAL+GKE G+ + V P G K EIL V + Sbjct: 121 ISNTSPIARALLGKEEGETVEVVIPDGRKMLEILAVRY 158 >gi|315453431|ref|YP_004073701.1| transcription elongation factor [Helicobacter felis ATCC 49179] gi|315132483|emb|CBY83111.1| transcription elongation factor [Helicobacter felis ATCC 49179] Length = 163 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 101/154 (65%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P++ G++KI EL+ ++ ERP +I+ I AR +GDL ENAEY AAK+ Q + R+ Sbjct: 2 QEPMSKYGYEKICAELKRLKEVERPCVIQEIDRAREHGDLKENAEYHAAKDKQAFIDARI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL + A+VID ST+S +++FG+TV ++ ++ + Y IVG E+D GL+S Sbjct: 62 AELSQTLANAQVIDPSTLSHQKVSFGSTVKILNLDNDKEFCYTIVGRMESDPSRGLISFG 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++L+GK+ GD + V P GE +EIL + + Sbjct: 122 SPIAKSLMGKQKGDEVIVVLPSGENEFEILDIFY 155 >gi|145298034|ref|YP_001140875.1| transcription elongation factor [Aeromonas salmonicida subsp. salmonicida A449] gi|142850806|gb|ABO89127.1| transcription elongation factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 158 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNHTPMTVRGAEKLREELDYLKSELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VID++ ++ + R+ FGATV+L++ + ++ Y+IVGD E+D++ ++ Sbjct: 61 RIQEIESKLSNAQVIDVTKIANNGRVIFGATVTLLKSETEEEVVYRIVGDDESDIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE+ D++ V P G+ YEIL V ++ Sbjct: 121 SVNSPIARALIGKEVDDVVIVKTPAGDVEYEILAVAYL 158 >gi|163745673|ref|ZP_02153033.1| transcription elongation factor GreA [Oceanibulbus indolifex HEL-45] gi|161382491|gb|EDQ06900.1| transcription elongation factor GreA [Oceanibulbus indolifex HEL-45] Length = 156 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTRDGHTALEVELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ A+VID +SG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++ Sbjct: 61 RIKELEGVISLADVIDPKKLSGS-IKFGATVTLVDEDTEEEKTYQIVGEYEANIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGK+ GD + V PGG+K+YE+L++++ Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGQKSYEVLKIVY 155 >gi|222056354|ref|YP_002538716.1| transcription elongation factor GreA [Geobacter sp. FRC-32] gi|221565643|gb|ACM21615.1| transcription elongation factor GreA [Geobacter sp. FRC-32] Length = 158 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 112/157 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPLTKESYEFLQEELKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G + Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157 >gi|109947754|ref|YP_664982.1| transcription elongation factor GreA [Helicobacter acinonychis str. Sheeba] gi|123362580|sp|Q17WJ3|GREA_HELAH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|109714975|emb|CAJ99983.1| greA [Helicobacter acinonychis str. Sheeba] Length = 164 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNREPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L II+ A+VID + ++++FG+T+ ++ ++ + +Y IVG E+D GL+S Sbjct: 61 RIVDLSEIISNAQVIDPGALMHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++LIGK GD+ S+ P GE +EIL + + Sbjct: 121 FGSPIAKSLIGKSKGDVASIQLPNGESDFEILDIYY 156 >gi|254448859|ref|ZP_05062315.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015] gi|198261549|gb|EDY85838.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015] Length = 159 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK+P+T +G + +++EL + +ERP II+AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MTDKVPMTVEGAEAMREELTQLKSKERPEIIQAIAEAREHGDLKENAEYHAARERQGFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A++ID+ ++ ++ FG TV L + ++ ++K Y+IVG+ EA++Q G Sbjct: 61 GRIKEIEGKLSYAQIIDVQSLPKSGKVVFGVTVELCDIDTEEEKTYKIVGEDEANIQQGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SP+AR+LIG+E GD + V PGG+ YEIL V + Sbjct: 121 ISFTSPVARSLIGREEGDCVLVKTPGGDHEYEILAVRY 158 >gi|221066104|ref|ZP_03542209.1| transcription elongation factor GreA [Comamonas testosteroni KF-1] gi|220711127|gb|EED66495.1| transcription elongation factor GreA [Comamonas testosteroni KF-1] Length = 158 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EG Sbjct: 1 MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + G R+ FGATV L +++SG YQIVG+ EAD++ GL+ Sbjct: 61 RIIEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSAVTYQIVGEDEADLKHGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SSPIARALIGKE GD V APGGE+ YEI+ V +I Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYI 158 >gi|145589200|ref|YP_001155797.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047606|gb|ABP34233.1| transcription elongation factor GreA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 158 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPITKRGAELLKEELHRLKHIERPAVIIAISEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE+ ++ A+VID +++ + FGATV L + G K YQIVGD EAD+ + Sbjct: 61 RIQELESKLSAAQVIDPASLDVTGLVVFGATVDLEDLEDGTKLTYQIVGDDEADIALNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALI KE GD+++V+AP G + EIL V +I Sbjct: 121 SISSPIARALISKEEGDVVAVHAPAGNREVEILAVRYI 158 >gi|94311130|ref|YP_584340.1| transcription elongation factor GreA [Cupriavidus metallidurans CH34] gi|93354982|gb|ABF09071.1| transcription elongation factor [Cupriavidus metallidurans CH34] Length = 173 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 86/158 (54%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 16 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID + + D RI FGATV L E SG+ +YQIVGD EAD+ +G + Sbjct: 76 RILEVEAKLSAAQVIDPTQLDTDGRIVFGATVDLEELESGNPVSYQIVGDDEADLDTGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ V APGGE+ YE++ V +I Sbjct: 136 SVSSPIARALIGKFEGDVAVVLAPGGEREYEVITVRYI 173 >gi|71891884|ref|YP_277614.1| transcription elongation factor GreA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747831|sp|Q493U4|GREA_BLOPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71795990|gb|AAZ40741.1| transcription elongation factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 158 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +K+++EL + + RP IIK ISEAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKRIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A +IDI+ ++ D + FGATV + ++ ++ Y IVGD EA+++ ++ Sbjct: 61 RIQEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTTYRQTYSIVGDDEANLKEHMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR LIG + GDI+ +N P G+ Y+ILQV + Sbjct: 121 SINSPIARGLIGHKEGDIVRINTPKGKVRYKILQVKYC 158 >gi|77462321|ref|YP_351825.1| transcription elongation factor GreA [Rhodobacter sphaeroides 2.4.1] gi|126461197|ref|YP_001042311.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17029] gi|221638177|ref|YP_002524439.1| transcription elongation factor GreA [Rhodobacter sphaeroides KD131] gi|332560203|ref|ZP_08414525.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N] gi|123592895|sp|Q3J5L0|GREA_RHOS4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200690|sp|A3PGS3|GREA_RHOS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799566|sp|B9KLF5|GREA_RHOSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|77386739|gb|ABA77924.1| transcription elongation factor GreA [Rhodobacter sphaeroides 2.4.1] gi|126102861|gb|ABN75539.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC 17029] gi|221158958|gb|ACL99937.1| Transcription elongation factor greA [Rhodobacter sphaeroides KD131] gi|332277915|gb|EGJ23230.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N] Length = 156 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF + EL+ + ERP +I++I+EAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MDKIPMTRAGFTALDDELKTLKTVERPAVIRSIAEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I++ AEVID + +SG I FGATV+++++ + +++ YQIVG+ EAD+++GL++ Sbjct: 61 RIKELEAILSLAEVIDPAKLSGS-IKFGATVTILDEETEEERTYQIVGEAEADIEAGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGK+ GD I V PGGE+ YE++ V ++ Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156 >gi|49080972|gb|AAT50079.1| PA4755 [synthetic construct] Length = 159 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G + Sbjct: 61 RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK GD + V PGG+ YEI++V I Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158 >gi|67459752|ref|YP_247376.1| transcription elongation factor GreA [Rickettsia felis URRWXCal2] gi|67005285|gb|AAY62211.1| Transcription elongation factor GreA [Rickettsia felis URRWXCal2] Length = 192 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 187 >gi|307546737|ref|YP_003899216.1| transcription elongation factor GreA [Halomonas elongata DSM 2581] gi|307218761|emb|CBV44031.1| transcription elongation factor GreA [Halomonas elongata DSM 2581] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 109/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++ EL + E RP +I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD++ GL+ Sbjct: 61 RIQEIEGKLSNAQVIDVTKLPKTGKVIFGVTVGLINLDNDEEVTYRIVGEDEADIKVGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE G+ + V PGG+ YEI V + Sbjct: 121 SVTSPIARALIGKEEGETVLVRTPGGDVEYEISSVEHL 158 >gi|292493676|ref|YP_003529115.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4] gi|291582271|gb|ADE16728.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T KG ++++EL+ + RPR++ AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MSKVPLTEKGAQQLREELQELKTVVRPRVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LE+ + A++ID++ + D R+ FG TV LV ++ + +YQIVGD EAD++ + Sbjct: 61 RIRDLEHQLAHAQIIDVNKLQKDGRVVFGVTVDLVNMDTDGEVSYQIVGDLEADIKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGK GD + V AP G YEI V + Sbjct: 121 SVNSPIARALIGKREGDEVQVQAPSGVVIYEIAAVCY 157 >gi|114330476|ref|YP_746698.1| transcription elongation factor GreA [Nitrosomonas eutropha C91] gi|114307490|gb|ABI58733.1| transcription elongation factor GreA [Nitrosomonas eutropha C91] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T G +K++ EL + RP II AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MNAIPITQSGAEKLRAELHEMKTVHRPAIIAAIAEARSHGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++I+ + ++ D FGATV LV+ ++ YQ+VGD EAD++ G + Sbjct: 61 RIAELESKLSNAQIINPAALNADGACVFGATVDLVDLDTNTAVTYQVVGDDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ V APGG + YEIL V +I Sbjct: 121 SISSPIARALIGKYAGDVAEVQAPGGIREYEILDVKYI 158 >gi|332993759|gb|AEF03814.1| transcription elongation factor GreA [Alteromonas sp. SN2] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+ G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSQYPMTAHGAQLLRDELNELKTKTRPRIIQSIAEAREHGDLKENAEYHAAREQQSFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD++ + Sbjct: 61 RIQDIEGKLSNAQIIDVTKMENKGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKQNRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKEL D++++ P G EI++V +I Sbjct: 121 SVNSPIARGLIGKELDDMVTIQTPAGSVEVEIIEVQYI 158 >gi|322379587|ref|ZP_08053924.1| transcription elongation factor GreA [Helicobacter suis HS1] gi|321147981|gb|EFX42544.1| transcription elongation factor GreA [Helicobacter suis HS1] Length = 161 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 104/154 (67%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQVFIEARI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++L+GK GD ++V P GE +EIL + + Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155 >gi|307611501|emb|CBX01175.1| transcription elongation factor GreA [Legionella pneumophila 130b] Length = 155 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL Sbjct: 1 MTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153 >gi|332534013|ref|ZP_08409864.1| transcription elongation factor GreA [Pseudoalteromonas haloplanktis ANT/505] gi|332036562|gb|EGI73029.1| transcription elongation factor GreA [Pseudoalteromonas haloplanktis ANT/505] Length = 158 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D +++EL + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQSIPMTVRGADLLRKELNELKTVTRPKIIADIAVAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++ID++ M ++ FG TV++V ++ + Y+IVGD EAD+++ L+ Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVDTDAEVKYRIVGDDEADIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK++ D +S+ P G YEI++V ++ Sbjct: 121 SVNSPIARGLIGKQVDDAVSIQTPKGIVEYEIIEVEYL 158 >gi|157804252|ref|YP_001492801.1| transcription elongation factor GreA [Rickettsia canadensis str. McKiel] gi|166200696|sp|A8F083|GREA_RICCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157785515|gb|ABV74016.1| transcription elongation factor GreA [Rickettsia canadensis str. McKiel] Length = 162 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 116/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDIS +SGD I FGATV+L++ ++ +K Y +VG+ EAD+ V Sbjct: 61 GRIKELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE+++V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVEVEY 157 >gi|255318889|ref|ZP_05360115.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter radioresistens SK82] gi|262378856|ref|ZP_06072013.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] gi|255304145|gb|EET83336.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter radioresistens SK82] gi|262300141|gb|EEY88053.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] Length = 158 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL + ERPRI AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKTALEKELHQLKTVERPRITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VIDI + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQVIDIKDLEQNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI+ V +I Sbjct: 121 SVNSPIARGLLGKSEGDEAKIVTPQGEVEYEIVSVEYI 158 >gi|157826347|ref|YP_001494067.1| transcription elongation factor GreA [Rickettsia akari str. Hartford] gi|157800305|gb|ABV75559.1| transcription elongation factor GreA [Rickettsia akari str. Hartford] Length = 192 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + ISEAR +GDLSENAEY+AA+E Q E Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDISEAREHGDLSENAEYEAAREKQAFIE 90 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPRGSKSYEVVTVEY 187 >gi|78222984|ref|YP_384731.1| transcription elongation factor GreA [Geobacter metallireducens GS-15] gi|78194239|gb|ABB32006.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 159 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + +D +Q+EL+ +EERPR+I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSYSVPMTKESYDSLQEELKRLIREERPRVIQDIAEARSHGDLSENAEYDAAKNRQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D+S + D++ FGATV+L + S ++ Y+IVG++EAD++ G + Sbjct: 61 GRIQELQGKLARAHVVDLSGLKPDKVVFGATVTLYDTTSEEEVTYKIVGEEEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLWI 158 S +SP+ +ALIG +L D + + P G K YEI+ + +I Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGSVKEYEIIDIKYI 159 >gi|325267980|ref|ZP_08134627.1| transcription elongation factor GreA [Kingella denitrificans ATCC 33394] gi|324980521|gb|EGC16186.1| transcription elongation factor GreA [Kingella denitrificans ATCC 33394] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G ++++ EL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MKKIPLTVNGAEQLKAELQKLKSVARPAIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELEN + A++I+ + +I FGATV L++ ++ +K YQIVGD EAD++ + Sbjct: 61 RIAELENKLAHAQIINPKEIHAEGKIVFGATVQLLDLDTDEKAQYQIVGDDEADIKLFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GDI V AP G + YEIL+V + Sbjct: 121 SVNSPIARALIGKEEGDIAEVQAPSGLREYEILKVAY 157 >gi|254482448|ref|ZP_05095687.1| transcription elongation factor GreA subfamily [marine gamma proteobacterium HTCC2148] gi|214037139|gb|EEB77807.1| transcription elongation factor GreA subfamily [marine gamma proteobacterium HTCC2148] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++ ERPRI AI++AR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTVAGEAALRSELEHLKKVERPRISDAIADAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ +VID++ ++ ++ FG TV L+ S + Y IVG+ EADV++ + Sbjct: 61 RIMEIEGKLSNCQVIDVTQITRTGKVIFGTTVDLINVESDETVTYTIVGEDEADVKNNRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARA+IGKE GD++ V APGG+ YEI QV I Sbjct: 121 SVGSPIARAMIGKEEGDVVLVKAPGGDIEYEIDQVQHI 158 >gi|39996379|ref|NP_952330.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA] gi|39983259|gb|AAR34653.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA] gi|298505389|gb|ADI84112.1| transcription elongation factor GreA [Geobacter sulfurreducens KN400] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 111/158 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T + ++ +Q+EL+ +EERPR+I+ I+EAR +GDLSENAEY AAK Q E Sbjct: 1 MSHTIPMTKESYEALQEELKRLIREERPRVIQDIAEARGHGDLSENAEYDAAKNRQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL+ + RA V+D++ M D++ FGATV+L + + ++ Y+IVG++EAD++ G + Sbjct: 61 GRILELQGKLARAYVVDLTGMKPDKVVFGATVTLYDTATEEEVTYKIVGEEEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SP+ +ALIG +L D + + P G K YEI+ + ++ Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGLKEYEIIDIKYV 158 >gi|198282924|ref|YP_002219245.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665891|ref|YP_002425127.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247445|gb|ACH83038.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518104|gb|ACK78690.1| transcription elongation factor GreA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 104/158 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DKIP+T G +++ EL + +RP +I+AI+EARA GDLSENAEY AAKE Q E Sbjct: 1 MNDKIPMTVIGAQRLRDELHRLKTVDRPTVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+E+ + RA+VID ++ A +E G++ YQIVGD EAD++ + Sbjct: 61 GRIREVEDYLARAQVIDPKQLNTGGKIVFAATVELEDAEGNEVTYQIVGDAEADLKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD + V APGG + Y IL V +I Sbjct: 121 SISSPIARALIGKHEGDPVEVRAPGGTREYTILAVRYI 158 >gi|15599949|ref|NP_253443.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAO1] gi|107103852|ref|ZP_01367770.1| hypothetical protein PaerPA_01004923 [Pseudomonas aeruginosa PACS2] gi|116052902|ref|YP_793219.1| transcription elongation factor GreA [Pseudomonas aeruginosa UCBPP-PA14] gi|152984538|ref|YP_001350797.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7] gi|218893850|ref|YP_002442719.1| transcription elongation factor GreA [Pseudomonas aeruginosa LESB58] gi|254238509|ref|ZP_04931832.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719] gi|254244343|ref|ZP_04937665.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192] gi|296391582|ref|ZP_06881057.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAb1] gi|313109736|ref|ZP_07795676.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016] gi|25453009|sp|Q9HV46|GREA_PSEAE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|9951018|gb|AAG08141.1|AE004889_4 transcription elongation factor GreA [Pseudomonas aeruginosa PAO1] gi|115588123|gb|ABJ14138.1| transcription elongation factor GreA [Pseudomonas aeruginosa UCBPP-PA14] gi|126170440|gb|EAZ55951.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719] gi|126197721|gb|EAZ61784.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192] gi|150959696|gb|ABR81721.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7] gi|218774078|emb|CAW29894.1| transcription elongation factor GreA [Pseudomonas aeruginosa LESB58] gi|310882178|gb|EFQ40772.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G + Sbjct: 61 RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK GD + V PGG+ YEI++V I Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158 >gi|294670994|ref|ZP_06735850.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307481|gb|EFE48724.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 158 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MKKIPLTIRGAELLKNELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ A +I+ + + + ++ FGAT+ L + +SGD YQIVG+ EAD+++G + Sbjct: 61 RIAEIEHKLSHAHIINPAEIHAEGKVVFGATLMLEDLDSGDHVRYQIVGEDEADIKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALIGKE GD+ V APGG + YEI++V ++ Sbjct: 121 SVVSPIARALIGKEEGDVAEVQAPGGVREYEIVEVQYV 158 >gi|123440804|ref|YP_001004795.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087765|emb|CAL10551.1| transcription elongation factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607370|emb|CBY28868.1| transcription elongation factor GreA [Yersinia enterocolitica subsp. palearctica Y11] Length = 158 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+ Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ D++ + PGGE YEIL V ++ Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILTVDYV 158 >gi|224370120|ref|YP_002604284.1| GreA1 [Desulfobacterium autotrophicum HRM2] gi|223692837|gb|ACN16120.1| GreA1 [Desulfobacterium autotrophicum HRM2] Length = 175 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 109/154 (70%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D+IP+T +G+ +++EL+ + ERP+ IKAI ARA+GDLSENAE+ AAK+ Q+ EGR Sbjct: 22 DQIPITIEGYAALKEELQRLKTIERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIEGR 81 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + EL I A++ID +T+S D + F + V + +SG++ Y IVG +E+D+ G +S+ Sbjct: 82 IGELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKISV 141 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SSP+ AL+GK+ GD I + APGG++ YEI+ +L Sbjct: 142 SSPLGMALLGKQPGDEIVIQAPGGKRNYEIVDIL 175 >gi|221134941|ref|ZP_03561244.1| transcription elongation factor GreA [Glaciecola sp. HTCC2999] Length = 158 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+ G + ++ EL+ + +RP II AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MTQYPMTAHGAEMLRAELQELKSVKRPEIITAIAEAREHGDLKENAEYHAAREQQSFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + +I FG TV+L+ + D+ Y+IVGD EAD+++ L+ Sbjct: 61 RIQDIEGKLSNAQIIDVTKMENTGKIIFGTTVTLINCETDDEITYKIVGDDEADIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK + D+ ++ P G +E+++V +I Sbjct: 121 SVNSPIARGLIGKMVDDVANIQTPKGVVEFEVIEVQYI 158 >gi|304391328|ref|ZP_07373272.1| transcription elongation factor GreA [Ahrensia sp. R2A130] gi|303296684|gb|EFL91040.1| transcription elongation factor GreA [Ahrensia sp. R2A130] Length = 157 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 97/157 (61%), Positives = 123/157 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ E + R E+R RI+ AISEAR +GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTKPGHAALEAEYKRRTSEDRHRIVAAISEAREHGDLSENAEYHAAKEQQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE++I RAEVIDIS MSGD I FGATV L ++ +G++K+YQIVGDQEADV SG +S Sbjct: 61 RIMELEDVIARAEVIDISKMSGDTIRFGATVKLEDEQNGEEKHYQIVGDQEADVASGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPI+RALIGKE GD + V APGG + YEIL V ++ Sbjct: 121 ISSPISRALIGKEEGDSVEVAAPGGARAYEILSVQYV 157 >gi|317050953|ref|YP_004112069.1| transcription elongation factor GreA [Desulfurispirillum indicum S5] gi|316946037|gb|ADU65513.1| transcription elongation factor GreA [Desulfurispirillum indicum S5] Length = 156 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 113/154 (73%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T G + +++EL ++ ER ++ + I+ ARA+GDL ENAEY AA+E Q+ EG Sbjct: 1 MDRIPMTKTGLENLRKELEHLKKNERHQVKEEIAVARAHGDLKENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AELE+ + RAEVID ST++ D++ FG+ V+L+ + + Y +VGD EAD +S L++ Sbjct: 61 RIAELEDKVLRAEVIDPSTLASDKVLFGSQVTLLNLETDSEVVYTVVGDDEADYKSNLIA 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SSP+A++LIGK +GD + VNAP G YEIL++ Sbjct: 121 VSSPLAQSLIGKRVGDEVVVNAPKGAVEYEILKI 154 >gi|322419242|ref|YP_004198465.1| transcription elongation factor GreA [Geobacter sp. M18] gi|320125629|gb|ADW13189.1| transcription elongation factor GreA [Geobacter sp. M18] Length = 158 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RA V+D+S + D++ FGATV++ + ++ ++ Y+IVG+ EAD++ G + Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTSTEEEITYKIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGMKEYEIIEIRY 157 >gi|257095281|ref|YP_003168922.1| transcription elongation factor GreA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047805|gb|ACV36993.1| transcription elongation factor GreA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 158 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +K++ EL + ERPR I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MSKIPLTVHGAEKLRAELHHLKTVERPRAIAAIAEARSHGDLSENAEYDAAKERQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + A++ID + D R FGAT+ L ++ SG + +YQIVG+ EAD+++G + Sbjct: 61 RIKEVESKLANAQIIDPKLLDADGRCVFGATLELEDQESGSRVSYQIVGEDEADIKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GDI V APGG + YE+L V + Sbjct: 121 SINSPIARALIGKFAGDIAEVQAPGGVREYEVLNVRY 157 >gi|88857845|ref|ZP_01132487.1| transcription elongation factor greA [Pseudoalteromonas tunicata D2] gi|88819462|gb|EAR29275.1| transcription elongation factor greA [Pseudoalteromonas tunicata D2] Length = 158 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + ++ EL + +RP+II I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQQIPMTVRGVELLRAELNELKTVKRPKIIADIAVAREHGDLKENAEYHAAREEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ +VID++ M+ + ++ FG TV++V + + Y+IVGD EA++++ L+ Sbjct: 61 RIQEIEAKLSNVQVIDVTKMANNGKVIFGTTVTIVNVETDAEVTYRIVGDDEANIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK + D ++++ P G YEI+ V +I Sbjct: 121 SVNSPIARGLVGKSVDDAVTISTPKGNVEYEIIAVEYI 158 >gi|58582509|ref|YP_201525.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427103|gb|AAW76140.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae KACC10331] Length = 170 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 16 PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 75 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISS Sbjct: 76 LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 135 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 136 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 169 >gi|15604691|ref|NP_221209.1| transcription elongation factor GreA [Rickettsia prowazekii str. Madrid E] gi|121608|sp|P27640|GREA_RICPR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|46346|emb|CAA78107.1| GreA [Rickettsia prowazekii] gi|434678|gb|AAB81401.1| GreA [Rickettsia prowazekii] gi|3861386|emb|CAA15285.1| TRANSCRIPTION ELONGATION FACTOR GREA (greA) [Rickettsia prowazekii] gi|292572525|gb|ADE30440.1| Transcription elongation factor GreA [Rickettsia prowazekii Rp22] Length = 162 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY 157 >gi|319403838|emb|CBI77424.1| transcription elongation factor GreA [Bartonella rochalimae ATCC BAA-1498] gi|319406848|emb|CBI80483.1| transcription elongation factor GreA [Bartonella sp. 1-1C] Length = 157 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGTHNYEIIKVQYI 157 >gi|303256868|ref|ZP_07342882.1| transcription elongation factor GreA [Burkholderiales bacterium 1_1_47] gi|330998883|ref|ZP_08322610.1| transcription elongation factor GreA [Parasutterella excrementihominis YIT 11859] gi|302860359|gb|EFL83436.1| transcription elongation factor GreA [Burkholderiales bacterium 1_1_47] gi|329576097|gb|EGG57616.1| transcription elongation factor GreA [Parasutterella excrementihominis YIT 11859] Length = 157 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 110/155 (70%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T++G ++ EL+ + ++RP +++AI+EAR GDLSENAEY AA+E Q EGR+ Sbjct: 3 IPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGRIL 62 Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ I + +VID ST+ ++ F ATV++ + +G+++ QIVG+ E+D + G +S++ Sbjct: 63 ELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRISVA 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARALIGK GD + V APGG YEI+ V +I Sbjct: 123 SPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI 157 >gi|296108269|ref|YP_003619970.1| transcription elongation factor GreA [Legionella pneumophila 2300/99 Alcoy] gi|295650171|gb|ADG26018.1| transcription elongation factor GreA [Legionella pneumophila 2300/99 Alcoy] Length = 155 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 74/153 (48%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL Sbjct: 1 MTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKEL D ++V PGG YEI+QV +I Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153 >gi|124266456|ref|YP_001020460.1| transcription elongation factor GreA [Methylibium petroleiphilum PM1] gi|124259231|gb|ABM94225.1| transcription elongation factor GreA [Methylibium petroleiphilum PM1] Length = 168 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ IP+T +G +K+++EL + ER +I+AI+EARA GDLSENAEY+AAK+ Q E Sbjct: 10 IMATIPLTKRGAEKLKEELHRLKSVERHAVIQAIAEARAQGDLSENAEYEAAKDKQGFIE 69 Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E+ + A++ID + + G R+ FGATV L E++SGD YQIVGD EAD++ GL Sbjct: 70 GRILEIESKMAAAQIIDPAMLDAGGRVVFGATVELEEESSGDSVTYQIVGDDEADLKQGL 129 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S+SSPIARA+IGKE GD+ APGG + YEI++V ++ Sbjct: 130 ISVSSPIARAMIGKEAGDVAEFQAPGGTRRYEIVEVRYL 168 >gi|254487531|ref|ZP_05100736.1| transcription elongation factor GreA [Roseobacter sp. GAI101] gi|214044400|gb|EEB85038.1| transcription elongation factor GreA [Roseobacter sp. GAI101] Length = 160 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 82/155 (52%), Positives = 118/155 (76%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KIP+T G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EGR Sbjct: 6 EKIPMTRAGHSALETELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEGR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ A+VID + MSG I FGA V+LV++++ ++K YQIVG+ EA+++ GL++I Sbjct: 66 VKELEGAISLADVIDPAKMSG-AIKFGAKVTLVDEDTDEEKTYQIVGEYEANIEKGLLNI 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGK+ GD + V PGG K+YE+L++++ Sbjct: 125 KSPIARALIGKDEGDSVEVRTPGGVKSYEVLKIIY 159 >gi|254437943|ref|ZP_05051437.1| transcription elongation factor GreA subfamily [Octadecabacter antarcticus 307] gi|198253389|gb|EDY77703.1| transcription elongation factor GreA subfamily [Octadecabacter antarcticus 307] Length = 156 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFNKLDAELKHLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID+S +SG + FGA V+LV++ + + YQIVG+ EAD++ G ++ Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLVDEATDKETTYQIVGEYEADIEQGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGK+ GD + V PGG K+YEIL +++ Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155 >gi|146283640|ref|YP_001173793.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501] gi|145571845|gb|ABP80951.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501] gi|327482035|gb|AEA85345.1| transcription elongation factor GreA [Pseudomonas stutzeri DSM 4166] Length = 158 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL+ + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MTKFPMTIQGARALEEELKHLKTVLRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VIDI+++ ++ FG TV + + ++ YQIVGD EAD++ G + Sbjct: 61 RIRDIEGRLQNAQVIDIASIAPTGKVIFGTTVDIANVETDEQVTYQIVGDDEADIKQGKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGKE GD+++V P G YEI++V I Sbjct: 121 SVSSPIARALIGKEEGDVVAVKTPSGLIEYEIVEVRHI 158 >gi|50085902|ref|YP_047412.1| transcription elongation factor GreA [Acinetobacter sp. ADP1] gi|49531878|emb|CAG69590.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter sp. ADP1] Length = 158 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + ++ID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI+ V +I Sbjct: 121 SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI 158 >gi|304387186|ref|ZP_07369429.1| transcription elongation factor GreA [Neisseria meningitidis ATCC 13091] gi|304338753|gb|EFM04864.1| transcription elongation factor GreA [Neisseria meningitidis ATCC 13091] gi|325132389|gb|EGC55082.1| transcription elongation factor greA [Neisseria meningitidis M6190] gi|325136526|gb|EGC59130.1| transcription elongation factor greA [Neisseria meningitidis M0579] Length = 173 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|148263922|ref|YP_001230628.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4] gi|146397422|gb|ABQ26055.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4] Length = 158 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E Sbjct: 1 MSQSVPLTKESYEFLQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G + Sbjct: 61 GRIQELSDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+ + + Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157 >gi|127513765|ref|YP_001094962.1| transcription elongation factor GreA [Shewanella loihica PV-4] gi|126639060|gb|ABO24703.1| transcription elongation factor GreA [Shewanella loihica PV-4] Length = 158 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + + E+RP+I +AI AR GDL ENAEY AA+E Q L E Sbjct: 1 MNKVPMTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + R+ FG TV+++ +S ++ Y+IVG+ EAD+++ L+ Sbjct: 61 RVRDIEGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDEADIKANLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI V +I Sbjct: 121 SVTSPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEYI 158 >gi|21242607|ref|NP_642189.1| transcription elongation factor GreA [Xanthomonas axonopodis pv. citri str. 306] gi|78047466|ref|YP_363641.1| transcription elongation factor GreA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624591|ref|ZP_06703266.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666706|ref|ZP_06731942.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|25452987|sp|Q8PLD9|GREA_XANAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21108069|gb|AAM36725.1| transcriptional elongation factor [Xanthomonas axonopodis pv. citri str. 306] gi|78035896|emb|CAJ23587.1| transcriptional elongation factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601126|gb|EFF45188.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603531|gb|EFF46946.1| transcription elongation factor GreA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 158 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISS Sbjct: 64 LESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|90409512|ref|ZP_01217553.1| transcription elongation factor greA (transcript cleavage factor) [Psychromonas sp. CNPT3] gi|90309381|gb|EAS37625.1| transcription elongation factor greA (transcript cleavage factor) [Psychromonas sp. CNPT3] Length = 159 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T+ G +++EL + E RPRI+ AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MVQYPMTATGAAALRKELERLKNETRPRIVAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++IDI+ ++ + R+ FG TV++V + ++ Y+IVGD E+D++ L+ Sbjct: 61 RIQDIEAKLSHAQIIDINKLANNGRVIFGTTVTIVNVETDEEVTYKIVGDDESDIKLNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK + D +++ PGG YEI+ V +I Sbjct: 121 SVNSPIARGLIGKMVDDELTIQTPGGAIEYEIINVQYI 158 >gi|257454668|ref|ZP_05619924.1| transcription elongation factor GreA [Enhydrobacter aerosaccus SK60] gi|257447978|gb|EEV22965.1| transcription elongation factor GreA [Enhydrobacter aerosaccus SK60] Length = 158 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPQGHAALEEELKQLKTVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + AEVID + R+ FG TV + ++ ++K Y+IVGD EAD ++ + Sbjct: 61 RIRDIEAKLGGAEVIDPLKLPQEGRVVFGVTVVIENLDTEEQKRYKIVGDDEADFKANKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIAR LIGK GD + P GE YEI++VL+ Sbjct: 121 SINSPIARGLIGKSEGDEAKIQTPSGEVEYEIVEVLY 157 >gi|194290079|ref|YP_002005986.1| transcription elongation factor grea [Cupriavidus taiwanensis LMG 19424] gi|193223914|emb|CAQ69923.1| transcription elongation factor [Cupriavidus taiwanensis LMG 19424] Length = 158 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+++G + Sbjct: 61 RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLEAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V APGGE+ YE++ V +I Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158 >gi|319405277|emb|CBI78891.1| transcription elongation factor GreA [Bartonella sp. AR 15-3] Length = 157 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 137/157 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ISSPIARALIGK+ GD+I VNAPGG YEI++V +I Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157 >gi|304311954|ref|YP_003811552.1| Transcription elongation factor [gamma proteobacterium HdN1] gi|301797687|emb|CBL45909.1| Transcription elongation factor [gamma proteobacterium HdN1] Length = 159 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+ ++P+T +G ++++EL ++ ERPR++ AI+EARA+GDL ENAEY AAKE Q E Sbjct: 1 MIKRVPMTVEGEVRLREELDNLKKVERPRVVAAIAEARAHGDLKENAEYHAAKEQQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+AE+E+ ++ A+VIDI+ + ++ FG T+ L + + +++ ++IVG+ EAD + G Sbjct: 61 GRIAEIESKLSEAQVIDITRIAPTGKVIFGVTLKLYDVDKDEERAFKIVGEDEADFKEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S+ SPIAR LIGK +GD +SV+ PGG TYEIL+V + Sbjct: 121 ISVGSPIARGLIGKFVGDEVSVDTPGGGVTYEILEVNHV 159 >gi|161870299|ref|YP_001599469.1| transcription elongation factor GreA [Neisseria meningitidis 053442] gi|161595852|gb|ABX73512.1| transcription elongation factor [Neisseria meningitidis 053442] Length = 173 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|120597887|ref|YP_962461.1| transcription elongation factor GreA [Shewanella sp. W3-18-1] gi|146293941|ref|YP_001184365.1| transcription elongation factor GreA [Shewanella putrefaciens CN-32] gi|120557980|gb|ABM23907.1| transcription elongation factor GreA [Shewanella sp. W3-18-1] gi|145565631|gb|ABP76566.1| transcription elongation factor GreA [Shewanella putrefaciens CN-32] gi|319427318|gb|ADV55392.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200] Length = 158 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MTKVPMTVVGAEQLRKELDILKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGVTDYEIISVQYI 158 >gi|114763611|ref|ZP_01443016.1| transcription elongation factor GreA [Pelagibaca bermudensis HTCC2601] gi|114543891|gb|EAU46903.1| transcription elongation factor GreA [Roseovarius sp. HTCC2601] Length = 156 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 78/156 (50%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T GF ++ EL+ + +ERP +I+AI+EAR GDL ENAEY +A+E Q EG Sbjct: 1 MEKILITRAGFTALETELKTLKSKERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E +++ AEVID + +SG + FGATV +V++++ ++K +QIVG+ EA++ GL++ Sbjct: 61 RIKEIEAVMSLAEVIDPTKLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEANIDKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGGEK+YEIL + + Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGEKSYEILSIDY 155 >gi|24372774|ref|NP_716816.1| transcription elongation factor GreA [Shewanella oneidensis MR-1] gi|24346855|gb|AAN54261.1|AE015563_1 transcription elongation factor GreA [Shewanella oneidensis MR-1] Length = 158 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGLTDYEIISVQYI 158 >gi|253826205|gb|ACT36389.1| transcriptional elogation factor GreA [uncultured bacterium L11E10] Length = 158 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 77/153 (50%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G ++++EL + + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ + Sbjct: 4 PITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRINQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ + G R+ FGATV L ++ ++K YQIVGD EAD++ L++ISS Sbjct: 64 LEAELSTAEVIDVAVLDAGSRVVFGATVILAHVDTDEQKTYQIVGDLEADIKQSLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALIGK GD + + AP GE YEI+ V + Sbjct: 124 PIARALIGKNEGDSVVIQAPAGEHEYEIISVSY 156 >gi|117619726|ref|YP_857805.1| transcription elongation factor GreA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561133|gb|ABK38081.1| transcription elongation factor GreA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 158 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNHTPMTVRGAEKLREELEYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A+VIDI+ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ ++ Sbjct: 61 RIQEIESKLSNAQVIDITKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE+ D+ V P G+ YEIL+V ++ Sbjct: 121 SVNSPIARALIGKEVDDVAIVKTPAGDVEYEILEVAYL 158 >gi|149909289|ref|ZP_01897945.1| transcription elongation factor GreA [Moritella sp. PE36] gi|149807606|gb|EDM67554.1| transcription elongation factor GreA [Moritella sp. PE36] Length = 159 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + IP+T++G + ++ EL + RP I+ +I+ AR +GDL ENAEY AA+E Q E Sbjct: 1 MSNMIPMTARGAENLRIELEHLKTVRRPEIVSSIAVAREHGDLKENAEYHAAREEQGFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ ++E ++ ++ID++ ++ + R+ FG TV + + ++ Y +VGD EA+++ Sbjct: 61 GRVQDIEWKLSNCQIIDVTKIANNGRVIFGCTVKIYNTETEEEITYNLVGDDEANIKENR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR L+GK + D+ V PGG +EI+ V +I Sbjct: 121 ISINSPIARGLVGKSVDDVAMVKTPGGAIEFEIVSVEYI 159 >gi|238899018|ref|YP_002924700.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259647646|sp|C4K7K9|GREA_HAMD5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229466778|gb|ACQ68552.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 158 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G +K+++EL+ + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MTQIPMTLRGAEKLREELQHLKSVLRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + + + FGATV+++ +S +KK YQIVGD EA+ + L+ Sbjct: 61 RIQEIESKLSHAQIIDVTKIANKGIVIFGATVTVLNTHSEEKKIYQIVGDDEANFKKDLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LI K++ D+ ++ PGGE YEIL V + Sbjct: 121 SVNSPIARGLIAKKISDVAVIHTPGGEVEYEILDVKYC 158 >gi|268319887|ref|YP_003293543.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] gi|262398262|emb|CAX67276.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] Length = 160 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ ++VN PGG I V Sbjct: 121 ISNDSPIAQALLGKKKGEKVTVNTPGGTFDVTINDVK 157 >gi|89052989|ref|YP_508440.1| transcription elongation factor GreA [Jannaschia sp. CCS1] gi|122999643|sp|Q28V47|GREA_JANSC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|88862538|gb|ABD53415.1| GreA/GreB family elongation factor [Jannaschia sp. CCS1] Length = 156 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T KG + + EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPMTPKGLEAMNGELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID +T+SG I FGATV LV++ + ++K Y IVG+ EAD++ GL++ Sbjct: 61 RIKELEGSISLAQVIDPATLSG-AIKFGATVDLVDEETEEEKTYMIVGEAEADIEKGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGKE GD + V PGG K +EI+++ ++ Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGAKGFEIVKISYV 156 >gi|322514696|ref|ZP_08067723.1| transcription elongation factor GreA [Actinobacillus ureae ATCC 25976] gi|322119345|gb|EFX91458.1| transcription elongation factor GreA [Actinobacillus ureae ATCC 25976] Length = 158 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + I++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELIREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMVNNGKVIFGATVGLVNADTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIISVEYI 158 >gi|213421313|ref|ZP_03354379.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 109/150 (72%), Gaps = 1/150 (0%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E Sbjct: 1 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 60 Query: 70 ITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR Sbjct: 61 LSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIAR 120 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158 LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 121 GLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 150 >gi|113868419|ref|YP_726908.1| transcription elongation factor GreA [Ralstonia eutropha H16] gi|113527195|emb|CAJ93540.1| transcription elongation factor GreA [Ralstonia eutropha H16] Length = 158 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+ G + Sbjct: 61 RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADIDVGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK GD+ +V APGGE+ YE++ V +I Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158 >gi|34581077|ref|ZP_00142557.1| transcription elongation factor EF [Rickettsia sibirica 246] gi|25453000|sp|Q92FZ5|GREA_RICCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28262462|gb|EAA25966.1| transcription elongation factor EF [Rickettsia sibirica 246] Length = 162 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157 >gi|197118284|ref|YP_002138711.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem] gi|197087644|gb|ACH38915.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem] Length = 158 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ + Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKQCKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPAGVKEYEIIEIRY 157 >gi|309805184|ref|ZP_07699236.1| transcription elongation factor GreA [Lactobacillus iners LactinV 09V1-c] gi|308165418|gb|EFO67649.1| transcription elongation factor GreA [Lactobacillus iners LactinV 09V1-c] Length = 161 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ GD++S+N PGG I +V Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157 >gi|90418035|ref|ZP_01225947.1| transcription elongation factor greA [Aurantimonas manganoxydans SI85-9A1] gi|90337707|gb|EAS51358.1| transcription elongation factor greA [Aurantimonas manganoxydans SI85-9A1] Length = 157 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 103/156 (66%), Positives = 132/156 (84%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T+ G+D +++ELR RQQEERPRII AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MEKVPMTNHGYDALREELRRRQQEERPRIIAAISEARAHGDLSENAEYHAAKESQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE++ RAEVID++ MSG I FGATV L+++++ ++K YQIVGDQEADV+ G +S Sbjct: 61 RISELEDLTARAEVIDVTKMSGATIKFGATVKLIDEDTEEEKTYQIVGDQEADVKKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGK GD I V APGG ++YEIL+V W Sbjct: 121 ISSPIARALIGKTDGDTIEVAAPGGARSYEILEVRW 156 >gi|21231292|ref|NP_637209.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768656|ref|YP_243418.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. 8004] gi|188991526|ref|YP_001903536.1| transcription elongation factor GreA [Xanthomonas campestris pv. campestris str. B100] gi|25453015|sp|Q9L4D3|GREA_XANCP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7228158|emb|CAB77041.1| putative transcriptional elongation factor [Xanthomonas campestris] gi|21112945|gb|AAM41133.1| putative transcriptional elongation factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573988|gb|AAY49398.1| putative transcriptional elongation factor [Xanthomonas campestris pv. campestris str. 8004] gi|167733286|emb|CAP51485.1| transcriptional elongation factor [Xanthomonas campestris pv. campestris] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 118/154 (76%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AE+IDI+ + +G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISS Sbjct: 64 LEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|92115199|ref|YP_575127.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] gi|91798289|gb|ABE60428.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G K+++EL + EERPR+I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPMTVAGEQKLREELEQLKGEERPRVINAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ ++VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G + Sbjct: 61 RIQEIESKLSASQVIDVTKLPKTGKVIFGVTVDLINLHNDEEVRYRIVGEDEADIKAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD + V PGG+ YEI V + Sbjct: 121 SVTSPIARALIGKEEGDTVLVRTPGGDVEYEIAGVEHL 158 >gi|293609985|ref|ZP_06692287.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828437|gb|EFF86800.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123193|gb|ADY82716.1| transcription elongation factor, cleaves 3' nucleotide of paused Mrna [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + ++VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGASQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|224417876|ref|ZP_03655882.1| transcription elongation factor GreA [Helicobacter canadensis MIT 98-5491] Length = 159 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP Sbjct: 63 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 123 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 154 >gi|331007340|ref|ZP_08330536.1| Transcription elongation factor GreA [gamma proteobacterium IMCC1989] gi|330418856|gb|EGG93326.1| Transcription elongation factor GreA [gamma proteobacterium IMCC1989] Length = 153 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G D +Q EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+ E+ Sbjct: 1 MTKRGADALQAELDDLKKVQRPRIVQAIAEAREHGDLKENAEYHAAREQQSFCEGRLQEI 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ +++IDI ++ R+ FG TVSL+ ++ +K YQIVGD EADV+ G +S++SP Sbjct: 61 EGKLSNSQIIDIMSLPCTGRVIFGVTVSLLNLDTDEKVTYQIVGDDEADVKQGKISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK GD +++ P GE YEI V I Sbjct: 121 IARGLIGKSEGDDVAIKTPSGEVEYEIEAVKHI 153 >gi|126215706|sp|Q4UJS8|GREA_RICFE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 162 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157 >gi|325982668|ref|YP_004295070.1| transcription elongation factor GreA [Nitrosomonas sp. AL212] gi|325532187|gb|ADZ26908.1| transcription elongation factor GreA [Nitrosomonas sp. AL212] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T G + +++EL + RP +I AI+EARA+GDLSENAEY AAKE Q EG Sbjct: 1 MSTIPLTVAGAEALRKELHDMKTIHRPAVIAAIAEARAHGDLSENAEYDAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A++I+ + ++ D FGATV L + + + YQIVGD EA+++ G + Sbjct: 61 RIAELESKLSSAQIINPALINADGACVFGATVELEDLQNSEVVTYQIVGDDEANIKDGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPI+RALIGK GDI V+AP G + YEIL V +I Sbjct: 121 SISSPISRALIGKYAGDIAEVHAPSGIREYEILDVKYI 158 >gi|253700924|ref|YP_003022113.1| transcription elongation factor GreA [Geobacter sp. M21] gi|251775774|gb|ACT18355.1| transcription elongation factor GreA [Geobacter sp. M21] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 111/157 (70%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ + Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKLCKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+ +ALIG +L D + V+ P G K YEI+++ + Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGVKEYEIIEIRY 157 >gi|254787219|ref|YP_003074648.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901] gi|237686435|gb|ACR13699.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL ++ +RP+I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQKYPMTVEGEKALREELDHLKKVQRPKITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VIDIS M G+++ FG TV L+ + ++ +Y+IVG+ EA+++ + Sbjct: 61 RIQDIEAKLSNAQVIDISKMPVGEKVIFGVTVRLINVETDEEISYKIVGEDEANLKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARAL+GKE+GD+ V APGG+ YEI V I Sbjct: 121 SVTSPIARALVGKEVGDVALVKAPGGDIEYEIDAVSHI 158 >gi|298292332|ref|YP_003694271.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296928843|gb|ADH89652.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 152 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 85/151 (56%), Positives = 119/151 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ RQQ +R RII AISEARA+GDLSENAEY AAKE Q LNEGR+AEL Sbjct: 1 MTPGGHAALEIELKQRQQVDRQRIISAISEARAHGDLSENAEYHAAKEQQALNEGRIAEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ ++RAE+ID++ +SGD + FGATV+L+++++ ++K++QIVGD EAD ++G +SISSP+ Sbjct: 61 EDKLSRAEIIDVAKLSGDTVMFGATVTLIDEDTEEEKSWQIVGDMEADAKAGRISISSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK+ G + V P G ++YEI V + Sbjct: 121 ARALIGKKRGTSVEVVTPKGARSYEIAAVRF 151 >gi|315038835|ref|YP_004032403.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|325957274|ref|YP_004292686.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|312276968|gb|ADQ59608.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|325333839|gb|ADZ07747.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|327184004|gb|AEA32451.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1118] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIQRIKVARSFGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157 >gi|302191231|ref|ZP_07267485.1| transcription elongation factor GreA [Lactobacillus iners AB-1] gi|309806139|ref|ZP_07700158.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|309808375|ref|ZP_07702277.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|309810229|ref|ZP_07704074.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|312871828|ref|ZP_07731916.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|312873001|ref|ZP_07733061.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|312875557|ref|ZP_07735558.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2053A-b] gi|325912092|ref|ZP_08174490.1| transcription elongation factor GreA [Lactobacillus iners UPII 143-D] gi|325912612|ref|ZP_08174995.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|329920134|ref|ZP_08276965.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] gi|308167494|gb|EFO69654.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|308168382|gb|EFO70498.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|308169501|gb|EFO71549.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|311088811|gb|EFQ47254.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2053A-b] gi|311091523|gb|EFQ49907.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|311092770|gb|EFQ51126.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|325476042|gb|EGC79210.1| transcription elongation factor GreA [Lactobacillus iners UPII 143-D] gi|325478033|gb|EGC81162.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|328936588|gb|EGG33032.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] Length = 161 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ GD++S+N PGG I +V Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157 >gi|51474029|ref|YP_067786.1| transcription elongation factor GreA [Rickettsia typhi str. Wilmington] gi|81389908|sp|Q68VQ2|GREA_RICTY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|51460341|gb|AAU04304.1| transcription elongation factor GreA [Rickettsia typhi str. Wilmington] Length = 162 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 114/157 (72%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYVIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GD + V P G K+YE++ V + Sbjct: 121 SIASPIAKALIGKSVGDFVEVITPKGLKSYEVVTVEY 157 >gi|84683984|ref|ZP_01011886.1| Transcription elongation factor greA [Maritimibacter alkaliphilus HTCC2654] gi|84667737|gb|EAQ14205.1| Transcription elongation factor greA [Rhodobacterales bacterium HTCC2654] Length = 156 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T G+ + EL+ + ERP +I AISEAR +GDLSENAEY AA+E Q+ EG Sbjct: 1 MEKILLTRAGYTALNDELKKLKSVERPAVIAAISEAREHGDLSENAEYHAAREKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+II AEVID + +SG I F ATV LV++++ ++K YQIVG+ EAD++ G ++ Sbjct: 61 RVKELESIIGLAEVIDPAKLSG-AIKFSATVKLVDEDTDEEKTYQIVGEPEADLEKGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARALIGKE GD + V PGGEK+YEIL++ +I Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGEKSYEILEIEYI 156 >gi|113969357|ref|YP_733150.1| transcription elongation factor GreA [Shewanella sp. MR-4] gi|114046584|ref|YP_737134.1| transcription elongation factor GreA [Shewanella sp. MR-7] gi|117919466|ref|YP_868658.1| transcription elongation factor GreA [Shewanella sp. ANA-3] gi|113884041|gb|ABI38093.1| transcription elongation factor GreA [Shewanella sp. MR-4] gi|113888026|gb|ABI42077.1| transcription elongation factor GreA [Shewanella sp. MR-7] gi|117611798|gb|ABK47252.1| transcription elongation factor GreA [Shewanella sp. ANA-3] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M+ + RI FG TV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGTTVTILNLDTDAEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI+ V +I Sbjct: 121 SVNSPIARGLVGKNEGDEVSIATPGGLTDYEIISVQYI 158 >gi|302879460|ref|YP_003848024.1| transcription elongation factor GreA [Gallionella capsiferriformans ES-2] gi|302582249|gb|ADL56260.1| transcription elongation factor GreA [Gallionella capsiferriformans ES-2] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G DK++QEL + ERP +I AISEARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MIKIPLTLVGADKMRQELHKLKTVERPWVINAISEARAQGDLSENAEYEAAKDRQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE + A++ID T++ + R FG+TV L E NSGD YQIVGD EAD+++ + Sbjct: 61 RIIELEGKLGSAQIIDPKTLNANGRCVFGSTVILEEMNSGDVVTYQIVGDDEADIKARKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIARALIGK GD+ V PGG + YE+++V +I Sbjct: 121 SISSPIARALIGKSSGDVAEVKTPGGIREYELIEVQYI 158 >gi|114704985|ref|ZP_01437893.1| transcription elongation factor (transcript cleavage factor) protein [Fulvimarina pelagi HTCC2506] gi|114539770|gb|EAU42890.1| transcription elongation factor (transcript cleavage factor) protein [Fulvimarina pelagi HTCC2506] Length = 157 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 104/156 (66%), Positives = 137/156 (87%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T++GF+ +++ELR RQQEERPRII+AISEARA+GDLSENAEY AAKE Q+LNEG Sbjct: 1 MQKVPMTTRGFETLKEELRRRQQEERPRIIQAISEARAHGDLSENAEYHAAKEAQSLNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE++ RAEVID+S MSGD++ FGATV LV++ + +++ +QIVGDQEADV+SG +S Sbjct: 61 RISELEDVTARAEVIDVSKMSGDKVMFGATVKLVDEETEEERLFQIVGDQEADVKSGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ISSPIARALIGKE GD + V APGG ++YE+L+VLW Sbjct: 121 ISSPIARALIGKEEGDTVEVAAPGGARSYEVLEVLW 156 >gi|42519498|ref|NP_965428.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|116630017|ref|YP_815189.1| transcription elongation factor [Lactobacillus gasseri ATCC 33323] gi|227889550|ref|ZP_04007355.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|238853796|ref|ZP_04644162.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282851368|ref|ZP_06260733.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1] gi|300361220|ref|ZP_07057397.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|311110352|ref|ZP_07711749.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22] gi|41583786|gb|AAS09394.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|116095599|gb|ABJ60751.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|227850028|gb|EEJ60114.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|238833605|gb|EEQ25876.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282557336|gb|EFB62933.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1] gi|300353839|gb|EFJ69710.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|311065506|gb|EFQ45846.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22] gi|329667737|gb|AEB93685.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC 6026] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +++N PGG I V Sbjct: 121 ISNDSPIAQALLGKKKGEKVTINTPGGTFDVTINDVK 157 >gi|295688363|ref|YP_003592056.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756] gi|295430266|gb|ADG09438.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756] Length = 152 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 120/152 (78%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+ Sbjct: 1 MTVGGYQTLDEELKRLKTIERPSVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I RA+VID+S +SG ++ FGATVS++++++ ++ YQIVGD EADV+SG +S+SSP+ Sbjct: 61 EDKIARAQVIDVSKLSGKQVKFGATVSVIDEDTEEEARYQIVGDHEADVKSGRISLSSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +RA+IGKE+G+++ VN PGG K YEI +V W+ Sbjct: 121 SRAMIGKEVGEVVEVNTPGGVKAYEITKVEWL 152 >gi|225023997|ref|ZP_03713189.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC 23834] gi|224943022|gb|EEG24231.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC 23834] Length = 162 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ KIP+T +G + ++QEL+ + ERP II+AI+EAR +GDLSENAEY+AAKE Q E Sbjct: 4 IMQKIPLTVRGAELLKQELQHLKSVERPAIIEAIAEARTHGDLSENAEYEAAKEKQGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR++ELEN ++ A +ID + + +I FG TV L + + + YQIVGD EAD++ Sbjct: 64 GRISELENKLSAAHIIDPTEIHAEGKIVFGCTVVLEDLENETQVRYQIVGDDEADIKDNK 123 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPI+RALIGKE GD+ V APGG + YE+++VL+I Sbjct: 124 ISISSPISRALIGKEEGDVAEVQAPGGIREYEVIEVLYI 162 >gi|93005658|ref|YP_580095.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis K5] gi|123264676|sp|Q1QCJ2|GREA_PSYCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|92393336|gb|ABE74611.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis K5] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G + Sbjct: 61 RIRDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G YEI++V++ Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157 >gi|86151410|ref|ZP_01069625.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 260.94] gi|86153776|ref|ZP_01071979.1| transcription elongation factor greA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612714|ref|YP_001000001.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|167004957|ref|ZP_02270715.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|315123863|ref|YP_004065867.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166200654|sp|A1VY10|GREA_CAMJJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|85841757|gb|EAQ59004.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 260.94] gi|85842737|gb|EAQ59949.1| transcription elongation factor greA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250181|gb|EAQ73139.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81-176] gi|315017585|gb|ADT65678.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 161 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKESKYTLVGICEGDLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|254491388|ref|ZP_05104567.1| transcription elongation factor GreA subfamily [Methylophaga thiooxidans DMS010] gi|224462866|gb|EEF79136.1| transcription elongation factor GreA subfamily [Methylophaga thiooxydans DMS010] Length = 158 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+TS+G + ++ EL+ + RP ++ AISEARA+GDL ENAEY AAKE Q+ EGR+ Sbjct: 3 VPITSRGAEALKHELKELKSVARPTVVAAISEARAHGDLKENAEYHAAKEQQSFIEGRIQ 62 Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE +++ A+VID +++ D R+ FG TVSL+ ++ ++K YQIVGD E+D++ +S+S Sbjct: 63 ELEGVLSNAQVIDPASLPQDGRVVFGVTVSLLNIDTDEEKAYQIVGDYESDIKLNRISVS 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALIGKE+ DI +V APGG YEI+++ + Sbjct: 123 SPIARALIGKEIDDIATVQAPGGNIEYEIIEISY 156 >gi|171059502|ref|YP_001791851.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6] gi|170776947|gb|ACB35086.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6] Length = 158 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G + +++EL+ + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG Sbjct: 1 MATIPLTKRGAELLKEELQRLKTIERPWVINAIAEARAQGDLSENAEYEAAKDKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID + + G R+ FGATV L E+ SGD YQIVG+ EAD++ GLV Sbjct: 61 RILDVEGKLAIAQVIDPAVLDAGGRVVFGATVDLEEEESGDAVTYQIVGEDEADLKKGLV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALIGKE GD+ V APGG K YE+++V ++ Sbjct: 121 SVGSPIARALIGKEAGDVAEVQAPGGVKRYEVVEVRYV 158 >gi|119504338|ref|ZP_01626418.1| GreA/GreB family elongation factor [marine gamma proteobacterium HTCC2080] gi|119459846|gb|EAW40941.1| GreA/GreB family elongation factor [marine gamma proteobacterium HTCC2080] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++E+RPRII+AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTVAGEQSLRDELDRLKREDRPRIIQAIAEAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E+ ++ A++ID+S + ++ FG TV L+ + + Y+IVG+ E+DV++ L+ Sbjct: 61 RIQDIEHKLSHAQIIDVSAIPNTGKVIFGTTVDLINTENDNPVTYRIVGEDESDVKANLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARAL+GK GD + V AP G+ YEI +V I Sbjct: 121 SVSSPIARALVGKSEGDEVVVKAPSGDIYYEIERVHHI 158 >gi|309803130|ref|ZP_07697227.1| transcription elongation factor GreA [Lactobacillus iners LactinV 11V1-d] gi|312874272|ref|ZP_07734306.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|308164638|gb|EFO66888.1| transcription elongation factor GreA [Lactobacillus iners LactinV 11V1-d] gi|311090342|gb|EFQ48752.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEIGTDDSEMYTIVGSDESDPLSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ GD++S+N PGG I +V Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157 >gi|119774088|ref|YP_926828.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119766588|gb|ABL99158.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELDILKFDRRPKITEAIAAARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M+ + RI FGATV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK LGD +++ P G YE+++V +I Sbjct: 121 SVNSPIARGLVGKNLGDEVNITTPAGVTAYEVVEVQYI 158 >gi|313141419|ref|ZP_07803612.1| transcription elongation factor greA [Helicobacter canadensis MIT 98-5491] gi|313130450|gb|EFR48067.1| transcription elongation factor greA [Helicobacter canadensis MIT 98-5491] Length = 163 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 7 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP Sbjct: 67 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 126 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 127 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 158 >gi|78485225|ref|YP_391150.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] gi|123755246|sp|Q31H97|GREA_THICR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|78363511|gb|ABB41476.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G D +Q+EL+ ++ ERP + AI+EAR +GDL ENAEY AA+E Q L E Sbjct: 1 MQRHPMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E+++ ++ID++ + ++ FG+TV+++ ++ ++ Y+IVG++EAD++ + Sbjct: 61 RIKQIESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALI KE G+ I+V AP G YEI+++ ++ Sbjct: 121 SVNSPIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV 158 >gi|119469583|ref|ZP_01612487.1| transcription elongation factor greA [Alteromonadales bacterium TW-7] gi|119447118|gb|EAW28388.1| transcription elongation factor greA [Alteromonadales bacterium TW-7] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D +++EL + RP+II I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQTIPMTVRGADLLRKELNELKTVTRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD+++ L+ Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK++ D +++ P G+ YEI++V ++ Sbjct: 121 SVNSPIARGLIGKQMDDAVTIKTPKGDVEYEIIEVEYL 158 >gi|71065373|ref|YP_264100.1| transcription elongation factor GreA [Psychrobacter arcticus 273-4] gi|123775615|sp|Q4FTJ2|GREA_PSYA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71038358|gb|AAZ18666.1| GreA transcription elongation factor [Psychrobacter arcticus 273-4] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A++ID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G + Sbjct: 61 RIRDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD + P G YEI++V++ Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157 >gi|89095224|ref|ZP_01168147.1| transcription elongation factor greA (transcript cleavage factor) [Oceanospirillum sp. MED92] gi|89080521|gb|EAR59770.1| transcription elongation factor greA (transcript cleavage factor) [Oceanospirillum sp. MED92] Length = 153 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++EL + +RPR+I I+EAR +GDL ENAEY AA+E Q EGR+ EL Sbjct: 1 MTAAGEKALREELDQLKTVDRPRVIADIAEAREHGDLKENAEYHAAREQQGFIEGRIQEL 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ +VID++++ ++ FG TV+++ ++ + K YQIVGD EAD++ +S++SP Sbjct: 61 EGKLSNCQVIDVTSIPHTGKVIFGTTVTIINLDTDETKTYQIVGDDEADIKVNKISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR L+GKE GDI+++ PGG YEI +V I Sbjct: 121 IARGLVGKEEGDIVNIQTPGGAAEYEIDEVAHI 153 >gi|237748685|ref|ZP_04579165.1| transcription elongation factor protein [Oxalobacter formigenes OXCC13] gi|229380047|gb|EEO30138.1| transcription elongation factor protein [Oxalobacter formigenes OXCC13] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IPVT +G ++ EL+ + ++R +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MSSIPVTVRGAQMLRDELQRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A++ID +T++ + +I F ATVS+ + +GD+ YQIVG+ EAD++ + Sbjct: 61 RIAELEGKLSSAQIIDPTTLNTNGKIVFAATVSVEDLETGDRVTYQIVGNDEADLKEFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SP+ARALIG+E GD++ VNAP G + YEIL+V++I Sbjct: 121 SITSPMARALIGREEGDVVEVNAPAGVREYEILEVMFI 158 >gi|86149591|ref|ZP_01067821.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni CF93-6] gi|283955709|ref|ZP_06373200.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 1336] gi|85839859|gb|EAQ57118.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni CF93-6] gi|283792664|gb|EFC31442.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 1336] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|261400869|ref|ZP_05986994.1| transcription elongation factor GreA [Neisseria lactamica ATCC 23970] gi|313668543|ref|YP_004048827.1| transcription elongation factor [Neisseria lactamica ST-640] gi|269209345|gb|EEZ75800.1| transcription elongation factor GreA [Neisseria lactamica ATCC 23970] gi|309379687|emb|CBX21676.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006005|emb|CBN87464.1| transcription elongation factor [Neisseria lactamica 020-06] Length = 158 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVQYI 158 >gi|121635119|ref|YP_975364.1| transcription elongation factor [Neisseria meningitidis FAM18] gi|218768434|ref|YP_002342946.1| transcription elongation factor GreA [Neisseria meningitidis Z2491] gi|254805211|ref|YP_003083432.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|261377466|ref|ZP_05982039.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685] gi|296314208|ref|ZP_06864149.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC 43768] gi|25453011|sp|Q9JTT4|GREA_NEIMA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|120866825|emb|CAM10583.1| transcription elongation factor [Neisseria meningitidis FAM18] gi|121052442|emb|CAM08778.1| transcription elongation factor [Neisseria meningitidis Z2491] gi|254668753|emb|CBA06621.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|254672956|emb|CBA07383.1| Transcription elongation factor [Neisseria meningitidis alpha275] gi|261392308|emb|CAX49834.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Neisseria meningitidis 8013] gi|269146195|gb|EEZ72613.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685] gi|296839104|gb|EFH23042.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC 43768] gi|308389534|gb|ADO31854.1| transcription elongation factor [Neisseria meningitidis alpha710] gi|319410678|emb|CBY91057.1| transcription elongation factor GreA (transcript cleavage factor GreA) [Neisseria meningitidis WUE 2594] gi|325128511|gb|EGC51389.1| transcription elongation factor greA [Neisseria meningitidis N1568] gi|325134589|gb|EGC57233.1| transcription elongation factor greA [Neisseria meningitidis M13399] gi|325138430|gb|EGC60996.1| transcription elongation factor greA [Neisseria meningitidis ES14902] gi|325144750|gb|EGC67045.1| transcription elongation factor greA [Neisseria meningitidis M01-240013] gi|325198564|gb|ADY94020.1| transcription elongation factor greA [Neisseria meningitidis G2136] gi|325201872|gb|ADY97326.1| transcription elongation factor greA [Neisseria meningitidis M01-240149] gi|325204417|gb|ADY99870.1| transcription elongation factor greA [Neisseria meningitidis M01-240355] gi|325205816|gb|ADZ01269.1| transcription elongation factor greA [Neisseria meningitidis M04-240196] gi|325208376|gb|ADZ03828.1| transcription elongation factor greA [Neisseria meningitidis NZ-05/33] Length = 158 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|319778418|ref|YP_004129331.1| Transcription elongation factor GreA [Taylorella equigenitalis MCE9] gi|317108442|gb|ADU91188.1| Transcription elongation factor GreA [Taylorella equigenitalis MCE9] Length = 158 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T G ++ +EL+ + ERP +I+AI+EARA GDLSENAEY AA+E Q E Sbjct: 1 MSTLPLTKAGSIRLTEELQKLKTVERPAVIQAIAEARAQGDLSENAEYDAARERQGFIEA 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +++ +++I+ ST+ GD+I FGATV L + +SG+ YQIVGD EAD++ + Sbjct: 61 RIKELEGVLSNSQIIEPSTLEAGDKIVFGATVELEDLDSGELVKYQIVGDAEADIKLNTI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSP+AR LIGK GD I ++ P GEK YEIL V +I Sbjct: 121 SISSPVARGLIGKHEGDTIKISVPSGEKEYEILSVEYI 158 >gi|59801297|ref|YP_208009.1| hypothetical protein NGO0899 [Neisseria gonorrhoeae FA 1090] gi|239998864|ref|ZP_04718788.1| transcription elongation factor GreA [Neisseria gonorrhoeae 35/02] gi|240016658|ref|ZP_04723198.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA6140] gi|240112789|ref|ZP_04727279.1| transcription elongation factor GreA [Neisseria gonorrhoeae MS11] gi|240123392|ref|ZP_04736348.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID332] gi|240128094|ref|ZP_04740755.1| transcription elongation factor GreA [Neisseria gonorrhoeae SK-93-1035] gi|254493651|ref|ZP_05106822.1| transcription elongation factor [Neisseria gonorrhoeae 1291] gi|260440648|ref|ZP_05794464.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI2] gi|268594706|ref|ZP_06128873.1| transcription elongation factor [Neisseria gonorrhoeae 35/02] gi|268598857|ref|ZP_06133024.1| transcription elongation factor [Neisseria gonorrhoeae MS11] gi|268682016|ref|ZP_06148878.1| transcription elongation factor [Neisseria gonorrhoeae PID332] gi|268686483|ref|ZP_06153345.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035] gi|59718192|gb|AAW89597.1| putative transcription elongation factor [Neisseria gonorrhoeae FA 1090] gi|226512691|gb|EEH62036.1| transcription elongation factor [Neisseria gonorrhoeae 1291] gi|268548095|gb|EEZ43513.1| transcription elongation factor [Neisseria gonorrhoeae 35/02] gi|268582988|gb|EEZ47664.1| transcription elongation factor [Neisseria gonorrhoeae MS11] gi|268622300|gb|EEZ54700.1| transcription elongation factor [Neisseria gonorrhoeae PID332] gi|268626767|gb|EEZ59167.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035] Length = 158 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|120556264|ref|YP_960615.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8] gi|120326113|gb|ABM20428.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8] Length = 159 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++P+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ E Sbjct: 1 MADRVPMTKTGEARLREELKKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A+VID++TM + ++ FG TV LV + ++ YQIVG+ EAD+++G Sbjct: 61 GRIQEIEGKLSVAQVIDVTTMENTGKVIFGTTVHLVNMETDEEVTYQIVGEDEADIKAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S+SSPIARALIGK GD++++ P G YEI +V +I Sbjct: 121 LSVSSPIARALIGKNEGDVVAIRIPSGTVEYEISEVEYI 159 >gi|260576249|ref|ZP_05844241.1| transcription elongation factor GreA [Rhodobacter sp. SW2] gi|259021517|gb|EEW24821.1| transcription elongation factor GreA [Rhodobacter sp. SW2] Length = 151 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 116/152 (76%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF + EL+ + ERP +I+AI+EARA+GDLSENAEY AA+E Q+ EGR+ EL Sbjct: 1 MTRGGFVALDDELKLLKSVERPAVIRAIAEARAHGDLSENAEYHAAREKQSFIEGRIKEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E II+RAEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA+++ G ++I SP+ Sbjct: 61 EAIISRAEVIDPAKLSG-AIKFGATVTLVDEDTNEERTYQIVGEPEANIEGGFLNIRSPL 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK GD + V PGG+++YE+L + ++ Sbjct: 120 ARALIGKAEGDSVDVKTPGGQRSYEVLSIRFV 151 >gi|269103415|ref|ZP_06156112.1| transcription elongation factor GreA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163313|gb|EEZ41809.1| transcription elongation factor GreA [Photobacterium damselae subsp. damselae CIP 102761] Length = 157 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G K++QEL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRGEQKLRQELEVLMK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG TV+L+ ++ ++ Y+IVGD EAD + L+ Sbjct: 60 QIRDIEYKLSVAQVIDVTKMPNSGKVIFGTTVTLLNLDTDEETTYRIVGDDEADFKQNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD + + PGG K +EI++V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVQIATPGGTKEFEIVEVQYI 157 >gi|319942670|ref|ZP_08016977.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B] gi|319803753|gb|EFW00688.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B] Length = 158 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T+ G K++ EL + ++ RP ++ AI+EAR GDLSENAEY AA+E Q EG Sbjct: 1 MNRIPITAAGAAKLKAELDYLKKTARPNVVAAIAEAREKGDLSENAEYDAAREEQGHIEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE I +VID T+ +GDRI FGATV+L ++ YQIVGD EAD++ L+ Sbjct: 61 RIAELEGKIPALQVIDPKTVAAGDRIVFGATVTLYDEEEDSNVTYQIVGDDEADIKKNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIARALIGK GD + AP G+ T+E+ V + Sbjct: 121 SVSSPIARALIGKSEGDTVVFMAPKGKVTFEVETVEY 157 >gi|28198317|ref|NP_778631.1| transcription elongation factor GreA [Xylella fastidiosa Temecula1] gi|182680956|ref|YP_001829116.1| transcription elongation factor GreA [Xylella fastidiosa M23] gi|32129572|sp|Q87EB7|GREA_XYLFT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238691084|sp|B2I844|GREA_XYLF2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28056387|gb|AAO28280.1| transcriptional elongation factor [Xylella fastidiosa Temecula1] gi|182631066|gb|ACB91842.1| transcription elongation factor GreA [Xylella fastidiosa M23] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|300113257|ref|YP_003759832.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] gi|299539194|gb|ADJ27511.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG ++++ELR + RP+++ AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTEKGAQQLREELRELKTVVRPKVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LE+ + A++ID+S + D R+ FG TV L+ + +K +YQIVGD EA+++ + Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLINIETDEKASYQIVGDLEANIKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GD I V AP G YEI + + Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGVILYEIAAIGY 157 >gi|108763574|ref|YP_631602.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622] gi|108467454|gb|ABF92639.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622] Length = 172 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 108/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q+ EG Sbjct: 5 SDNIPMTPSGLRKLKEELKHLQSVERGKISREIEVARAHGDLRENAEYHAAKEKQSHIEG 64 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + I RAEVID + GD++ FGATV L++ + +Y++VG+ EAD++ ++ Sbjct: 65 RILTLNDWIARAEVIDPKKLGGDKVIFGATVDLLDTETDKPVSYRLVGEIEADLKKRWIA 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP+ARALIGK++GDI +V +PGG + E+ ++ + Sbjct: 125 VTSPVARALIGKKVGDIATVQSPGGVRELEVQEIRF 160 >gi|254450273|ref|ZP_05063710.1| transcription elongation factor GreA [Octadecabacter antarcticus 238] gi|198264679|gb|EDY88949.1| transcription elongation factor GreA [Octadecabacter antarcticus 238] Length = 156 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 117/156 (75%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG Sbjct: 1 MDKIPLTRAGFNKLDAELKNLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ A+VID+S +SG + FGA V+L+++ + + YQIVG+ EAD++ G ++ Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLIDEATDKETTYQIVGEYEADIEQGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIARALIGK+ GD + V PGG K+YEIL +++ Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155 >gi|300310712|ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gi|124483342|emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum seropedicae] gi|300073497|gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T +G + +++EL + ++RP +I AI+EARA GDLSENAEY++AKE Q EG Sbjct: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE + A+++D + ++ R+ F +TV L +SG+K YQIVG EAD++ V Sbjct: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGK GD+++V AP G K YEIL+V ++ Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 >gi|262369443|ref|ZP_06062771.1| transcription elongation factor [Acinetobacter johnsonii SH046] gi|262315511|gb|EEY96550.1| transcription elongation factor [Acinetobacter johnsonii SH046] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL + ERPRII AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPQGKLALEKELHQLKSIERPRIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y IVGD EAD + + Sbjct: 61 RVQDIEGKLGAAQVIDVKELEQNGRVVFGVTVTIENLDTEEQKTYMIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD + P GE YEI++V +I Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVKVAYI 158 >gi|330447386|ref|ZP_08311035.1| transcription elongation factor GreA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491577|dbj|GAA05532.1| transcription elongation factor GreA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 157 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLRSELDVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++TM ++ FG T++L++ ++ + Y IVGD EAD++ L+ Sbjct: 60 QIRDIEYKLSVAQIIDVTTMPNTGKVIFGTTITLLDLDTDKEVTYCIVGDDEADIKQNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD ++++ PGG+K +EIL+V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGQKEFEILEVQYI 157 >gi|307824612|ref|ZP_07654836.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] gi|307734266|gb|EFO05119.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] Length = 158 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG +K++ EL + RPRI+ +I+ ARA+GDL ENAEY AAKE Q+ EG Sbjct: 1 MNKVPLTVKGAEKLRAELEELKSVVRPRIVASIATARAHGDLKENAEYHAAKEQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++E+E ++ A++IDI+ + + ++ FGATV + + S K YQIVG+ EA+++ G + Sbjct: 61 RISEIEGKLSNAQIIDITKVDANGKVVFGATVEIEDIESERKVTYQIVGEDEANIKEGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SPIARALIGKE+ D+++V APGG YEI+ + +I Sbjct: 121 SIGSPIARALIGKEVEDVVTVKAPGGNVDYEIISIEYI 158 >gi|153874961|ref|ZP_02002967.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS] gi|152068576|gb|EDN67034.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS] Length = 157 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T++G K++ EL + ERP++I+AI+EARA GDL ENAEY AA+E Q+ EGR+ Sbjct: 2 KSPMTTQGAQKLRDELHHLKTVERPKVIQAIAEARALGDLKENAEYHAAREQQSFIEGRI 61 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE AE+IDI+ ++ + ++ FGATV+L+ + ++ YQIVGD EAD+++ L+SI Sbjct: 62 MELETKFASAEIIDITKINANGKVVFGATVNLMNVETEEEVTYQIVGDDEADIKAHLISI 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPIARALI KE G+I V APGG+K YEIL+V +I Sbjct: 122 SSPIARALIKKEEGEIAVVQAPGGKKEYEILEVKYI 157 >gi|297569319|ref|YP_003690663.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus AHT2] gi|296925234|gb|ADH86044.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus AHT2] Length = 161 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 114/156 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV++IP+T G +K++QEL Q+ ERPRII+AI AR +GDL ENAEY AAKE Q+ E Sbjct: 1 MVERIPMTRNGHEKLRQELNQLQRVERPRIIQAIETAREHGDLKENAEYHAAKERQSHVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ ++R+EVID S + +R+ FG V+LV+ ++ D+ YQ++G +EA V+ G + Sbjct: 61 GRIMELKDKLSRSEVIDCSALDCERVVFGVVVTLVDLDTDDEIRYQLLGPEEASVEDGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SP+ RA+IGK +GD + V PGG + +E++++ Sbjct: 121 SVLSPLGRAMIGKSVGDEVVVKTPGGIRQFEVMEIS 156 >gi|84624395|ref|YP_451767.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711939|ref|ZP_02243146.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzicola BLS256] gi|84368335|dbj|BAE69493.1| transcription elongation factor greA [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 158 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISS Sbjct: 64 LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157 >gi|126175452|ref|YP_001051601.1| transcription elongation factor GreA [Shewanella baltica OS155] gi|153001803|ref|YP_001367484.1| transcription elongation factor GreA [Shewanella baltica OS185] gi|160876536|ref|YP_001555852.1| transcription elongation factor GreA [Shewanella baltica OS195] gi|217972302|ref|YP_002357053.1| transcription elongation factor GreA [Shewanella baltica OS223] gi|304410278|ref|ZP_07391897.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307302011|ref|ZP_07581769.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|125998657|gb|ABN62732.1| transcription elongation factor GreA [Shewanella baltica OS155] gi|151366421|gb|ABS09421.1| transcription elongation factor GreA [Shewanella baltica OS185] gi|160862058|gb|ABX50592.1| transcription elongation factor GreA [Shewanella baltica OS195] gi|217497437|gb|ACK45630.1| transcription elongation factor GreA [Shewanella baltica OS223] gi|304351687|gb|EFM16086.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306914049|gb|EFN44470.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315268730|gb|ADT95583.1| transcription elongation factor GreA [Shewanella baltica OS678] Length = 158 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MTKVPMTVVGAEQLRKELDILKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDVEVTYRIVGDDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK GD +S+ PGG YEI+ V ++ Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGMTDYEIISVQYL 158 >gi|25453016|sp|Q9PEC0|GREA_XYLFA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 158 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ ++ G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISS Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|57237342|ref|YP_178355.1| transcription elongation factor GreA [Campylobacter jejuni RM1221] gi|88597201|ref|ZP_01100436.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 84-25] gi|148926989|ref|ZP_01810665.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8486] gi|157414583|ref|YP_001481839.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 81116] gi|205356059|ref|ZP_03222827.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8421] gi|218561949|ref|YP_002343728.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|25453017|sp|Q9PIK9|GREA_CAMJE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|73621018|sp|Q5HWI0|GREA_CAMJR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|172047031|sp|A8FK75|GREA_CAMJ8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|57166146|gb|AAW34925.1| transcription elongation factor GreA [Campylobacter jejuni RM1221] gi|88190262|gb|EAQ94236.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359655|emb|CAL34440.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844397|gb|EDK21506.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8486] gi|157385547|gb|ABV51862.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 81116] gi|205346183|gb|EDZ32818.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni CG8421] gi|284925562|gb|ADC27914.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni IA3902] gi|307747227|gb|ADN90497.1| Transcription elongation factor greA [Campylobacter jejuni subsp. jejuni M1] gi|315057711|gb|ADT72040.1| Transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni S3] gi|315927206|gb|EFV06556.1| Transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930041|gb|EFV09180.1| Transcription elongation factor [Campylobacter jejuni subsp. jejuni 305] Length = 161 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +S Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|115377193|ref|ZP_01464405.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|310821199|ref|YP_003953557.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|115365776|gb|EAU64799.1| transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] gi|309394271|gb|ADO71730.1| Transcription elongation factor GreA [Stigmatella aurantiaca DW4/3-1] Length = 169 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 108/157 (68%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q E Sbjct: 1 MSGNIPMTPSGLRKLKEELKQLQTVERGKISREIEVARAHGDLRENAEYHAAKEKQGHIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ +L + I RAEVID S + GD++ FGATV L++ + Y+IVG+ EAD++ + Sbjct: 61 GRILDLNDWIARAEVIDTSKLKGDKVVFGATVVLLDSETDKTVTYRIVGELEADIKKRWL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++SP+ARALIGK +GD+ V +PGGE+ YE+ ++ + Sbjct: 121 AVTSPVARALIGKGVGDVALVRSPGGEREYEVQEIRF 157 >gi|316984555|gb|EFV63520.1| transcription elongation factor GreA domain protein [Neisseria meningitidis H44/76] Length = 173 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 135 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173 >gi|153951319|ref|YP_001398665.1| transcription elongation factor GreA [Campylobacter jejuni subsp. doylei 269.97] gi|189042239|sp|A7H585|GREA_CAMJD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152938765|gb|ABS43506.1| transcription elongation factor GreA [Campylobacter jejuni subsp. doylei 269.97] Length = 161 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 102/156 (65%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S Sbjct: 61 RIVELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARA++GK+ GD V P GE +EIL + + Sbjct: 121 IASPIARAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|88812984|ref|ZP_01128227.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231] gi|88789762|gb|EAR20886.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231] Length = 158 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL + ERP+I++AI+EARA+GDL ENAEY AA+E Q+L EG Sbjct: 1 MSRRPLTVRGAQMLKEELARLKTRERPKIVRAIAEARAHGDLKENAEYHAAREQQSLLEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE + A++ID+ ++S D ++ FG TV L E++SGD+ YQIVG+ EAD++ G V Sbjct: 61 RIAELEEKLANAQIIDVRSLSADGKVVFGVTVVLAEESSGDEMTYQIVGEDEADIKHGKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SPIARALIGKE G+I+ V AP G ++YEI++V + Sbjct: 121 SIHSPIARALIGKEEGEIVEVRAPAGNRSYEIVEVRY 157 >gi|71276055|ref|ZP_00652336.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Dixon] gi|71899477|ref|ZP_00681635.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|170729661|ref|YP_001775094.1| transcription elongation factor GreA [Xylella fastidiosa M12] gi|238687951|sp|B0U568|GREA_XYLFM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71163138|gb|EAO12859.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Dixon] gi|71730790|gb|EAO32863.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|167964454|gb|ACA11464.1| GreA/GreB family elongation factor [Xylella fastidiosa M12] Length = 158 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTLKGVRRLRDELEHLKLVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|291277117|ref|YP_003516889.1| transcription elongation factor [Helicobacter mustelae 12198] gi|290964311|emb|CBG40161.1| transcription elongation factor [Helicobacter mustelae 12198] Length = 161 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K++ EL+ ++ +RP I+K I AR++GDL ENAEY AAKE Q E R+ + Sbjct: 3 PITQYGYEKLRAELKDLKEIQRPNIVKDIDIARSHGDLKENAEYHAAKEKQLFIEARIND 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +++ ++ID T+S ++++FG++V + ++ Y IVG E+D GL+S SP Sbjct: 63 LTLLLSNVQIIDPHTLSHEKVSFGSSVKIRNLDTEKTFCYTIVGSVESDPARGLISFGSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA++LIGK +GD +S+ P GE +EIL+V + Sbjct: 123 IAKSLIGKIVGDEVSIVLPNGESDFEILEVFY 154 >gi|85712942|ref|ZP_01043982.1| Transcription elongation factor GreA [Idiomarina baltica OS145] gi|85693248|gb|EAQ31206.1| Transcription elongation factor GreA [Idiomarina baltica OS145] Length = 158 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 68/146 (46%), Positives = 112/146 (76%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP+T +G ++++QEL+ + E+RPRI++AI++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MNQIPMTERGAEQLRQELKRLKTEDRPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ YQIVGD EAD++S L+ Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYQIVGDDEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIARALIGKE+ DI +V P G Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNG 146 >gi|110833180|ref|YP_692039.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2] gi|110646291|emb|CAL15767.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2] Length = 170 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ ++P+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q E Sbjct: 12 IMQRVPMTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCE 71 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+A++E ++ A++IDI + + ++ FG TV++++ ++ + K YQIVGD EA+++ G Sbjct: 72 GRIADIEGKLSNAQIIDIQDIENTGKVIFGVTVTILDVDTDETKVYQIVGDDEANIKEGK 131 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIG+E GD++ ++ PGG + YE+ QV I Sbjct: 132 LSVNSPIARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 170 >gi|77166029|ref|YP_344554.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC 19707] gi|254436361|ref|ZP_05049867.1| transcription elongation factor GreA subfamily [Nitrosococcus oceani AFC27] gi|123593533|sp|Q3J822|GREA_NITOC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|76884343|gb|ABA59024.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC 19707] gi|207088051|gb|EDZ65324.1| transcription elongation factor GreA subfamily [Nitrosococcus oceani AFC27] Length = 158 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T KG ++++EL+ + RP+++ AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKVPLTEKGAQQLREELQELKTVVRPKVVTAIAEARAHGDLKENAEYHAAREEQGFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LE+ + A++ID+S + D R+ FG TV LV + ++ +YQIVGD EA+++ + Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEEASYQIVGDLEANIKENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIARALIGK GD I V AP G YEI + + Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGIILYEIAAIGY 157 >gi|227892809|ref|ZP_04010614.1| transcriptional elongation factor [Lactobacillus ultunensis DSM 16047] gi|227865450|gb|EEJ72871.1| transcriptional elongation factor [Lactobacillus ultunensis DSM 16047] Length = 159 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +IK I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIKRIKVARSFGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINKVE 157 >gi|170765496|ref|ZP_02900307.1| transcription elongation factor GreA [Escherichia albertii TW07627] gi|170124642|gb|EDS93573.1| transcription elongation factor GreA [Escherichia albertii TW07627] Length = 158 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 68/146 (46%), Positives = 105/146 (71%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIAR LIGKE D++ + PGG Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGG 146 >gi|325925177|ref|ZP_08186590.1| transcription elongation factor GreA [Xanthomonas perforans 91-118] gi|325544431|gb|EGD15801.1| transcription elongation factor GreA [Xanthomonas perforans 91-118] Length = 154 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP Sbjct: 61 ESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|256823598|ref|YP_003147561.1| transcription elongation factor GreA [Kangiella koreensis DSM 16069] gi|256797137|gb|ACV27793.1| transcription elongation factor GreA [Kangiella koreensis DSM 16069] Length = 160 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T +G + +Q EL ++ +RP+++ AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MNRVPMTVEGAEALQTELNELKKVKRPQVVAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSG 118 R+ E+E ++ ++++D++ +S + ++ FG+TV L+ + D+ Y+IVGD EAD++ Sbjct: 61 RIQEIEAKLSNSQIVDVTKISNNGKVIFGSTVILINMDDNNADEVQYKIVGDDEADIKKN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI+SPIAR LIGKE GDI ++ P G YEI +VL++ Sbjct: 121 KLSINSPIARGLIGKEEGDIANIQTPKGSVEYEIAEVLYL 160 >gi|315932570|gb|EFV11502.1| transcription elongation factor GreA [Campylobacter jejuni subsp. jejuni 327] Length = 161 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPTVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EIL + + Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156 >gi|305432833|ref|ZP_07401991.1| transcription elongation factor GreA [Campylobacter coli JV20] gi|304443987|gb|EFM36642.1| transcription elongation factor GreA [Campylobacter coli JV20] Length = 161 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQTLIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E D+ G +S Sbjct: 61 RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKENKYTLVGTCEGDLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156 >gi|240014222|ref|ZP_04721135.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI18] gi|240080847|ref|ZP_04725390.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA19] gi|240115541|ref|ZP_04729603.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID18] gi|240117836|ref|ZP_04731898.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID1] gi|240121785|ref|ZP_04734747.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID24-1] gi|240125640|ref|ZP_04738526.1| transcription elongation factor GreA [Neisseria gonorrhoeae SK-92-679] gi|268596964|ref|ZP_06131131.1| transcription elongation factor [Neisseria gonorrhoeae FA19] gi|268601215|ref|ZP_06135382.1| transcription elongation factor [Neisseria gonorrhoeae PID18] gi|268603535|ref|ZP_06137702.1| transcription elongation factor [Neisseria gonorrhoeae PID1] gi|268684227|ref|ZP_06151089.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679] gi|268550752|gb|EEZ45771.1| transcription elongation factor [Neisseria gonorrhoeae FA19] gi|268585346|gb|EEZ50022.1| transcription elongation factor [Neisseria gonorrhoeae PID18] gi|268587666|gb|EEZ52342.1| transcription elongation factor [Neisseria gonorrhoeae PID1] gi|268624511|gb|EEZ56911.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679] Length = 158 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYGIIEVRYI 158 >gi|71897683|ref|ZP_00679928.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] gi|71732586|gb|EAO34639.1| Prokaryotic transcription elongation factor GreA [Xylella fastidiosa Ann-1] Length = 158 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ + Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLETDEESRYQIVGDLEADIKQGLVAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157 >gi|325915491|ref|ZP_08177804.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC 35937] gi|325538292|gb|EGD09975.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC 35937] Length = 154 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVIAAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|332703955|ref|ZP_08424043.1| transcription elongation factor GreA [Desulfovibrio africanus str. Walvis Bay] gi|332554104|gb|EGJ51148.1| transcription elongation factor GreA [Desulfovibrio africanus str. Walvis Bay] Length = 163 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF ++++EL ++ +RP II+AI EAR GDL EN+ Y AA+E L E Sbjct: 1 MSSIPISVEGFQRLEKELHNLKK-DRPEIIQAIKEAREEGDLRENSGYHAARERLGLLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ +E+ + + +ID++T+ GD+ FGATV + + ++GDKK Y ++G EA+ G +S Sbjct: 60 RISFIESRMPQFNIIDLATLGGDKAIFGATVEIEDMDTGDKKRYTLLGPDEAEPTKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ +AL+GKE GD I VNAP G YEI+ + + Sbjct: 120 ILSPVGQALLGKEAGDEIVVNAPRGRIQYEIISIRF 155 >gi|284799703|ref|ZP_05984625.2| transcription elongation factor GreA [Neisseria subflava NJ9703] gi|284797264|gb|EFC52611.1| transcription elongation factor GreA [Neisseria subflava NJ9703] Length = 162 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKEHKI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162 >gi|242308872|ref|ZP_04808027.1| transcription elongation factor GreA [Helicobacter pullorum MIT 98-5489] gi|239524536|gb|EEQ64402.1| transcription elongation factor GreA [Helicobacter pullorum MIT 98-5489] Length = 159 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID ST++ D+++FG+T++L + S ++ Y IVG E++ GL+S SP Sbjct: 63 LTQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD ++++ P G+ YEIL++ + Sbjct: 123 LAKQLLGKVVGDEVTISLPKGKVDYEILEICY 154 >gi|255068112|ref|ZP_05319967.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256] gi|261364737|ref|ZP_05977620.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996] gi|255047627|gb|EET43091.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256] gi|288567037|gb|EFC88597.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996] Length = 158 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQRLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVQYI 158 >gi|259500541|ref|ZP_05743443.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|315653624|ref|ZP_07906544.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|259167925|gb|EEW52420.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|315488986|gb|EFU78628.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] Length = 174 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 14 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 73 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG Sbjct: 74 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 133 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ GD++S+N PGG I +V Sbjct: 134 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 170 >gi|304413874|ref|ZP_07395291.1| transcription elongation factor [Candidatus Regiella insecticola LSR1] gi|304283594|gb|EFL91989.1| transcription elongation factor [Candidatus Regiella insecticola LSR1] Length = 162 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T G +K+++EL + + + R II AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MAQIPMTVCGEEKLRKELEYLKNKRRQEIITAIAEARAHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ + + RI FG+TV+++ + ++ Y+IVGD EA+ + L+ Sbjct: 61 RIQEIETKLSNAQVIDVTEIVNNGRIIFGSTVTVLNIATDEEYIYRIVGDDEANAKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SP+AR LIGK++ D + PGG+ YEI+ V ++ Sbjct: 121 SVNSPMARGLIGKQIDDTTVITTPGGDIEYEIIAVEYL 158 >gi|134094396|ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage [Herminiimonas arsenicoxydans] gi|133738299|emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Herminiimonas arsenicoxydans] Length = 157 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+ Sbjct: 4 PITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE + +++ID +T+ D RI F ATV L + +SGDK YQIVG EAD++ VSI+S Sbjct: 64 LEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARA+IGK +GD+++V AP G + YE+LQV +I Sbjct: 124 PIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157 >gi|294085795|ref|YP_003552555.1| transcription elongation factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292665370|gb|ADE40471.1| Transcription elongation factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 167 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 74/155 (47%), Positives = 110/155 (70%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP T++G + I++EL + ER +I AI+ AR +GDLSENAEY AA+E Q+ EG Sbjct: 6 MEKIPFTAQGLEAIKEELAHLKGTERQAVINAIAVAREHGDLSENAEYHAARERQSFIEG 65 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ELE + +R+EVID S ++GD++ FG +V + ++ + ++ + IVG EAD+ GLVS Sbjct: 66 RISELEAVTSRSEVIDASQLTGDKVTFGTSVGVADEETDEESIFHIVGPYEADISKGLVS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SSPIAR LIGK +GD + PGG K+YEI+ + Sbjct: 126 TSSPIARGLIGKGIGDSAEIQTPGGTKSYEIISIE 160 >gi|303327141|ref|ZP_07357583.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3] gi|302863129|gb|EFL86061.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3] Length = 162 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +G+ K+++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MTSIPISVQGYKKLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + +V+D+ +SGD++ FG+TV + + +SG+ +N+ I+G EAD G +S Sbjct: 60 RIKYIESRLALYQVVDLDKLSGDKVIFGSTVEVEDVDSGESRNFTILGPDEADPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ +AL+GKE GD ++V P G TYE++ + + Sbjct: 120 FLSPVGQALLGKEEGDEVTVEIPRGRVTYEVVSIAF 155 >gi|226946316|ref|YP_002801389.1| transcription elongation factor GreA [Azotobacter vinelandii DJ] gi|226721243|gb|ACO80414.1| Prokaryotic transcription elongation factor GreA [Azotobacter vinelandii DJ] Length = 158 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL+ + E RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MTKFPMTVQGARALEEELKHLKTELRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID++ + ++ FG TV + + + YQIVGD EAD++ G + Sbjct: 61 RIRDIEGRLQNAQVIDVTAIPHTGKVIFGVTVEIANVETDETVVYQIVGDDEADIKQGKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARAL+GKE GD+ +V P G YEI++V + Sbjct: 121 SVSSPIARALVGKEEGDVAAVKTPSGTVEYEIIEVRHV 158 >gi|89101202|ref|ZP_01174032.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911] gi|89084088|gb|EAR63259.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911] Length = 158 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 98/152 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G +K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTQAGKEKLEQELEHLKTVKRKDVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I+ SGD + G +V+ VE G++++Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIEEDEASGDTVTLGRSVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK +GD ++V PGG+ + I + Sbjct: 127 PIAKSLMGKRVGDEVTVQTPGGDMSVRITSIK 158 >gi|308272737|emb|CBX29341.1| Transcription elongation factor greA [uncultured Desulfobacterium sp.] Length = 155 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 108/155 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP+T +G++ +++EL ++ ERP IKAI EARA+GDLSENAE+ AAK+ Q E Sbjct: 1 MDRIPITKRGYETLKKELEHLKKVERPGNIKAIEEARAHGDLSENAEFAAAKDRQAYLEC 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL I A+VID ++ DR FG TV L ++GD YQ+VG E+D+ G +S Sbjct: 61 RIGELSYKIGNADVIDPDSLPKDRAVFGCTVVLENIDTGDTIEYQLVGPDESDIGKGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SSP+ A+IGK+ G+ I + APGG++ YE++++L Sbjct: 121 VSSPLGMAIIGKKSGEEIVLQAPGGKRFYELVEIL 155 >gi|283955240|ref|ZP_06372741.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 414] gi|283793277|gb|EFC32045.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni 414] Length = 161 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +S Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEIISINY 156 >gi|325922459|ref|ZP_08184226.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC 19865] gi|325547079|gb|EGD18166.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC 19865] Length = 154 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVISAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQRDYEVVSVAYL 153 >gi|260103131|ref|ZP_05753368.1| transcription elongation factor GreA [Lactobacillus helveticus DSM 20075] gi|260083041|gb|EEW67161.1| transcription elongation factor GreA [Lactobacillus helveticus DSM 20075] gi|328464780|gb|EGF36095.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC 5463] Length = 158 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQIEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINNVE 157 >gi|91792357|ref|YP_562008.1| transcription elongation factor GreA [Shewanella denitrificans OS217] gi|91714359|gb|ABE54285.1| transcription elongation factor GreA [Shewanella denitrificans OS217] Length = 158 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MSKVPMTVVGAEQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++ + + R+ FG TV+++ + + Y+IVGD EAD++ L+ Sbjct: 61 RIRDIEGKLSNAQIIDVTKIENTGRVIFGTTVTILNVETDAEVKYRIVGDDEADIKQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG YEI+ V +I Sbjct: 121 SVNSPIARGLIGKNEGDEVSITTPGGLTDYEIIAVEYI 158 >gi|260429205|ref|ZP_05783182.1| transcription elongation factor GreA [Citreicella sp. SE45] gi|260419828|gb|EEX13081.1| transcription elongation factor GreA [Citreicella sp. SE45] Length = 156 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI +T GF ++ EL+ + EERP +I+AI+EAR GDL ENAEY +A+E Q EG Sbjct: 1 MEKILITRAGFTALETELKKLKSEERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+I+ AEVID T+SG + FGATV +V++++ ++K +QIVG+ EA ++ GL++ Sbjct: 61 RIKEIESIMGLAEVIDPRTLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEASIERGLLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SPIARALIGKE GD + V PGGEK+YEIL + + Sbjct: 120 IKSPIARALIGKEAGDSVEVRTPGGEKSYEILSIDY 155 >gi|308050593|ref|YP_003914159.1| transcription elongation factor GreA [Ferrimonas balearica DSM 9799] gi|307632783|gb|ADN77085.1| transcription elongation factor GreA [Ferrimonas balearica DSM 9799] Length = 158 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T +G + +++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q L E Sbjct: 1 MSQVPMTVRGAELLREELDYLKHTRRPKITEAIAAARELGDLKENAEYHAAREEQGLTEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E+ ++ A++ID++ + + RI FGAT +L+ S + Y+IVGD EAD+++GL+ Sbjct: 61 RIRDIESKLSVAQIIDVTKIPNNGRIIFGATATLLNVESDQEVTYRIVGDDEADLKAGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARA+IGKEL D++ V AP G+ YE+++V ++ Sbjct: 121 SVNSPIARAMIGKELDDVLVVKAPSGDIEYEVVEVKYL 158 >gi|160871787|ref|ZP_02061919.1| transcription elongation factor GreA [Rickettsiella grylli] gi|159120586|gb|EDP45924.1| transcription elongation factor GreA [Rickettsiella grylli] Length = 158 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +++EL + +RP++I AI+EAR++GDL ENAEY AAKE+Q EG Sbjct: 1 MKKIPMTISGAQYLKKELHQLKTLKRPQVIAAIAEARSHGDLKENAEYHAAKEMQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+EN + A++ID++ ++ ++ FG+T+ L+ ++ ++ YQIVG+ EAD++ + Sbjct: 61 RITEIENKLASAQIIDVTKLNNLGKVIFGSTIHLMNTHTHEQVTYQIVGEDEADIKHSKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIARALIGKE GD++ V P G I +V +I Sbjct: 121 SVASPIARALIGKEEGDLVEVQTPSGLVNLAIDKVEYI 158 >gi|192360133|ref|YP_001983144.1| transcription elongation factor [Cellvibrio japonicus Ueda107] gi|190686298|gb|ACE83976.1| transcription elongation factor [Cellvibrio japonicus Ueda107] Length = 159 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G +K++ EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ E Sbjct: 1 MSTKFPMTITGAEKLRLELEDLKKVQRPRIVQAIAEAREHGDLKENAEYSAAREQQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A++ID++T+ ++ FG TV+++ + YQIVGD EA+V++ Sbjct: 61 GRIKEIEGKLSNAQIIDVTTIPHTGKVIFGTTVTIINIETEQALTYQIVGDDEAEVKANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIARAL+GKE GD++ V APGG+ YEI +V + Sbjct: 121 ISVNSPIARALVGKEEGDVVIVRAPGGDVEYEIDKVEHL 159 >gi|319793964|ref|YP_004155604.1| transcription elongation factor grea [Variovorax paradoxus EPS] gi|315596427|gb|ADU37493.1| transcription elongation factor GreA [Variovorax paradoxus EPS] Length = 158 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL + ERP +I AISEARA GDLSENAEY+ AK+ Q EG Sbjct: 1 MATIPITKRGAEKLRAELHQLKTVERPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID S + G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL+ Sbjct: 61 RIQEVEGKLSAAQIIDPSELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ISSPIARALIGKE GD V APGG K YEI+ V ++ Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYL 158 >gi|157962891|ref|YP_001502925.1| transcription elongation factor GreA [Shewanella pealeana ATCC 700345] gi|157847891|gb|ABV88390.1| transcription elongation factor GreA [Shewanella pealeana ATCC 700345] Length = 158 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +P+T G ++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E Sbjct: 1 MSTVPMTIVGAAQLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A++ID++TM+ + R+ FG+TV++V ++ ++ Y+IVG+ EA+++ L+ Sbjct: 61 RVRDIEGKLSHAQIIDVTTMANNGRVIFGSTVTIVNVDTDEEVTYRIVGEDEANIRENLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK L D IS+ PGG +EI++V +I Sbjct: 121 SVSSPIARGLIGKSLDDEISIVTPGGTNDFEIIKVEYI 158 >gi|94986751|ref|YP_594684.1| transcription elongation factor GreA [Lawsonia intracellularis PHE/MN1-00] gi|94731000|emb|CAJ54363.1| transcription elongation factor greA [Lawsonia intracellularis PHE/MN1-00] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 108/153 (70%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +G+ +++EL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 3 IPISQQGYQNLEKELDRLKK-ERPAVIQAIKEAREEGDLKENAGYDAARERQGMLEARIN 61 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + + +IDI+T+SGD+ FGATV++ + +SG++K + ++G EAD G +SI S Sbjct: 62 YIESRMAQFNIIDITTLSGDKAIFGATVTVEDIDSGERKEFTLLGPDEADYTKGSISIQS 121 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ RAL+GK++GD ++V+ P G +YEI+ + + Sbjct: 122 PVGRALLGKKVGDELTVDVPRGRISYEIIDIQF 154 >gi|329893940|ref|ZP_08269975.1| Transcription elongation factor GreA [gamma proteobacterium IMCC3088] gi|328923395|gb|EGG30712.1| Transcription elongation factor GreA [gamma proteobacterium IMCC3088] Length = 159 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G ++ EL ++ ERPRII AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MNKVPMTKAGEMALRAELERLRKVERPRIIAAIAEAREHGDLKENAEYHAAREQQSFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VIDI+ + ++ FG T+ L+ + + Y+IVGD EADV+ L+ Sbjct: 61 RIMEIEGKLSYAQVIDITAIPHTGKVIFGTTIDLINLANDQEVTYRIVGDDEADVKRNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+SSPIARALIGKE GD++ V AP G+ YEI QV Sbjct: 121 SVSSPIARALIGKEEGDVVVVKAPSGDIEYEIDQVRH 157 >gi|91204868|ref|YP_537223.1| transcription elongation factor GreA [Rickettsia bellii RML369-C] gi|123266252|sp|Q1RKI0|GREA_RICBR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|91068412|gb|ABE04134.1| Transcription elongation factor GreA [Rickettsia bellii RML369-C] Length = 162 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 115/157 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+ K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E Sbjct: 1 MMAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ V Sbjct: 61 ARIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SPIA+ALIGK +GDI+ V PGG K+YE++ + + Sbjct: 121 SIASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 157 >gi|149183148|ref|ZP_01861597.1| transcription elongation factor GreA [Bacillus sp. SG-1] gi|148849131|gb|EDL63332.1| transcription elongation factor GreA [Bacillus sp. SG-1] Length = 158 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 97/151 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K+++EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR++ Sbjct: 7 FPMTQEGKEKLEKELEQLKSVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I M+ D + G +V+ +E GD++ Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIQEDEMNSDTVTLGKSVTFIELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PIA++L+G ++G +SV PGGE +I V Sbjct: 127 PIAKSLLGHKVGSEVSVQTPGGEMNVKITAV 157 >gi|253827215|ref|ZP_04870100.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] gi|253510621|gb|EES89280.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] Length = 156 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 101/151 (66%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ EL Sbjct: 1 MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP+ Sbjct: 61 TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK +GD +++ P G+ YEIL++ + Sbjct: 121 AKQLLGKVVGDEVTIQLPKGKVDYEILEICY 151 >gi|32490982|ref|NP_871236.1| hypothetical protein WGLp233 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340129|sp|Q8D2W9|GREA_WIGBR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|25166188|dbj|BAC24379.1| greA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T KG +K+++EL++ +Q +R IIK+ISEAR YGDL ENAEYQAAKE Q E Sbjct: 1 MNYIPMTLKGAEKLREELKYLKQTKRSEIIKSISEARQYGDLKENAEYQAAKEQQYFCES 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ + +++IDI + DR+ FG+T+++ + ++K Y+IVGD EA+ ++ L+ Sbjct: 61 RIKEIESKLMHSKIIDIKKIPFRDRVVFGSTITIKNLKTLEEKTYKIVGDDEANFKNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSP++R LIGK+ +I+++N P G Y+IL++ ++ Sbjct: 121 SISSPLSRGLIGKKTLEIVNINTPSGIIKYKILKINYL 158 >gi|190574174|ref|YP_001972019.1| transcription elongation factor GreA [Stenotrophomonas maltophilia K279a] gi|190012096|emb|CAQ45718.1| putative transcription elongation factor [Stenotrophomonas maltophilia K279a] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 75/154 (48%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ + Sbjct: 4 PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AE+ID+S ++ G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISS Sbjct: 64 LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKQGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARA+IGK GD I ++AP G++ YEI+ V ++ Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYV 157 >gi|319639242|ref|ZP_07993993.1| transcription elongation factor greA [Neisseria mucosa C102] gi|317399426|gb|EFV80096.1| transcription elongation factor greA [Neisseria mucosa C102] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158 >gi|298368446|ref|ZP_06979764.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014 str. F0314] gi|298282449|gb|EFI23936.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014 str. F0314] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE ++ A +I+ + + +I FG+TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RISELEYKLSVAHIINPAEIHAEGKIVFGSTVTLEDMETEEQVTYQIVGEDEADIKEHKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVEYI 158 >gi|57168415|ref|ZP_00367549.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228] gi|57020223|gb|EAL56897.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228] Length = 161 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 103/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E ++ G +S Sbjct: 61 RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+A++GK+ GD V P GE +EI+ + + Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156 >gi|315126858|ref|YP_004068861.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913] gi|315015372|gb|ADT68710.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G ++ EL + RP+I+ I++AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQSIPMTVRGAKLLRDELNELKTVTRPKIVSDIADAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD++S L+ Sbjct: 61 RIQEIEAKLSNMQMIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKSNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK+ D + + P G+ YEI++V +I Sbjct: 121 SVNSPIARGLIGKQADDAVIIKTPKGDVEYEIIEVEYI 158 >gi|311069214|ref|YP_003974137.1| transcription elongation factor GreA [Bacillus atrophaeus 1942] gi|310869731|gb|ADP33206.1| transcription elongation factor GreA [Bacillus atrophaeus 1942] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 103/158 (65%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ + + + G TV+ +E GD+++Y IVG EAD G Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGNSNIVGLGKTVTFIELPDGDEESYTIVGSAEADPFEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++LIGK++GD ++V PGGE +I+++ Sbjct: 121 KISNDSPIAKSLIGKQVGDQVTVQTPGGEMLVKIVKIS 158 >gi|34499256|ref|NP_903471.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] gi|34105107|gb|AAQ61463.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MIKVPLTVRGAELLKEELQRLKSVERPSVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A +I+ + + D R+ FGATV L++ + + YQIVGD EAD++ V Sbjct: 61 RIAELEGKLSNAVIINPAELDADGRVVFGATVDLMDLETEESVTYQIVGDDEADIKVCKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPI+RALIGKE GD+ V APGG + YE+L V +I Sbjct: 121 SVNSPISRALIGKEAGDVAEVVAPGGIREYEVLDVKYI 158 >gi|220930922|ref|YP_002507830.1| transcription elongation factor GreA [Halothermothrix orenii H 168] gi|219992232|gb|ACL68835.1| transcription elongation factor GreA [Halothermothrix orenii H 168] Length = 161 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G++K+++EL + +R ++ K I AR +GD+ EN+EY AK Q E Sbjct: 1 MANEVLLTQEGYEKLEKELDYLVNVKRRQVAKRIKVAREFGDIGENSEYDDAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+EN++ A +I ++GD + G TV L ++++ + +Y IVG EAD + + Sbjct: 61 GRIKEIENMLRNARIIKDEEVTGDTVNLGTTVKLKDRSTDEVFSYTIVGSAEADPLNFKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +A+IG ++GD++ V P G YEIL + Sbjct: 121 SNESPIGKAIIGHKIGDVVKVEVPSGIMEYEILAIE 156 >gi|241759232|ref|ZP_04757338.1| transcription elongation factor GreA [Neisseria flavescens SK114] gi|241320368|gb|EER56665.1| transcription elongation factor GreA [Neisseria flavescens SK114] Length = 158 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158 >gi|225075463|ref|ZP_03718662.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens NRL30031/H210] gi|224953281|gb|EEG34490.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens NRL30031/H210] Length = 162 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ + Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD+ V APGG + Y+I+ V +I Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162 >gi|15677289|ref|NP_274442.1| transcription elongation factor [Neisseria meningitidis MC58] gi|25453012|sp|Q9JYU3|GREA_NEIMB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7226670|gb|AAF41791.1| transcription elongation factor GreA [Neisseria meningitidis MC58] gi|325140625|gb|EGC63145.1| transcription elongation factor greA [Neisseria meningitidis CU385] gi|325199954|gb|ADY95409.1| transcription elongation factor greA [Neisseria meningitidis H44/76] Length = 158 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G + Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPIARALIGKE GD V APGG + Y+I++V +I Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >gi|239815600|ref|YP_002944510.1| transcription elongation factor GreA [Variovorax paradoxus S110] gi|239802177|gb|ACS19244.1| transcription elongation factor GreA [Variovorax paradoxus S110] Length = 158 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EG Sbjct: 1 MATIPITKRGAEKLRAELHQLKTVDRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A++ID + + G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL+ Sbjct: 61 RIQEVEGKLSAAQIIDPAELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ISSPIARALIGKE GD V APGG K YEI+ V +I Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYI 158 >gi|149375765|ref|ZP_01893533.1| Transcription elongation factor [Marinobacter algicola DG893] gi|149359890|gb|EDM48346.1| Transcription elongation factor [Marinobacter algicola DG893] Length = 159 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++P+T G ++++EL+ + E+RPR+I AIS+AR +GDL ENAEY AA+E Q+ E Sbjct: 1 MADRVPMTKAGEIRLREELQKLKSEDRPRVIAAISDAREHGDLKENAEYHAAREQQSFIE 60 Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E ++ A+VID++T+ + ++ FG TV L+ ++ ++ +YQIVG+ EAD+++G Sbjct: 61 GRIQEIEGKLSAAQVIDVNTIENTGKVIFGTTVQLLNVDTDEQVSYQIVGEDEADIKAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSPIARAL+GK GD+++V P G YEI QV I Sbjct: 121 LSISSPIARALVGKSEGDVVAVRVPSGTVEYEIEQVEHI 159 >gi|293381813|ref|ZP_06627786.1| transcription elongation factor GreA [Lactobacillus crispatus 214-1] gi|290921631|gb|EFD98660.1| transcription elongation factor GreA [Lactobacillus crispatus 214-1] Length = 158 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157 >gi|194365590|ref|YP_002028200.1| transcription elongation factor GreA [Stenotrophomonas maltophilia R551-3] gi|194348394|gb|ACF51517.1| transcription elongation factor GreA [Stenotrophomonas maltophilia R551-3] Length = 158 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 74/154 (48%), Positives = 114/154 (74%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ + Sbjct: 4 PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE ++ AE+ID+S ++ G ++ FGA+V+L + + +++ YQIVGD EAD++ GL++ISS Sbjct: 64 LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEERKYQIVGDLEADIKQGLIAISS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+ARA+IGK GD I ++AP G++ YEI+ V ++ Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYL 157 >gi|258405567|ref|YP_003198309.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM 5692] gi|257797794|gb|ACV68731.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM 5692] Length = 161 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D IP++ +GF+K++QEL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MDTIPISVEGFEKLKQELENLKK-ERPEVIQAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + + VID+ TM GD++AFGATV + + + + K Y ++G EA+V G +S Sbjct: 60 RITYIESRLPQCNVIDLDTMGGDKVAFGATVEIEDMETEEVKRYTLLGPDEANVDQGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A+AL+GK +GD VNAP G YE+L + + Sbjct: 120 VFSPLAKALLGKRVGDEAIVNAPRGRIEYEVLSIEF 155 >gi|197286719|ref|YP_002152591.1| transcription elongation factor GreB [Proteus mirabilis HI4320] gi|227355091|ref|ZP_03839502.1| transcription elongation factor [Proteus mirabilis ATCC 29906] gi|194684206|emb|CAR45694.1| transcription elongation factor [Proteus mirabilis HI4320] gi|227164878|gb|EEI49725.1| transcription elongation factor [Proteus mirabilis ATCC 29906] Length = 159 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITRDGWHALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V+L + + + K +++VG E D + Sbjct: 61 RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLED-DDENIKTFRLVGPDEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D +SV PGG Y +L + + Sbjct: 120 SIDSPVARALIGKKVDDEVSVQTPGGIVNYCVLSIKY 156 >gi|227877749|ref|ZP_03995783.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01] gi|256843602|ref|ZP_05549090.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN] gi|256850078|ref|ZP_05555508.1| transcriptional elongation factor [Lactobacillus crispatus MV-1A-US] gi|262047366|ref|ZP_06020323.1| transcriptional elongation factor [Lactobacillus crispatus MV-3A-US] gi|295693346|ref|YP_003601956.1| transcription elongation factor [Lactobacillus crispatus ST1] gi|227862652|gb|EEJ70137.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01] gi|256615022|gb|EEU20223.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN] gi|256713050|gb|EEU28041.1| transcriptional elongation factor [Lactobacillus crispatus MV-1A-US] gi|260572340|gb|EEX28903.1| transcriptional elongation factor [Lactobacillus crispatus MV-3A-US] gi|295031452|emb|CBL50931.1| Transcription elongation factor [Lactobacillus crispatus ST1] Length = 158 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157 >gi|238754105|ref|ZP_04615463.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473] gi|238707601|gb|EEP99960.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473] Length = 163 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + EL++ +EERPR+ +A+SEA A GD SENAEY K+ + Sbjct: 1 MSKSNYITREGWQALDLELKYLWREERPRVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + + G+++ +++VG E D + Sbjct: 61 RRVRFLSKRLDVLKIVDPDPRQEGKVYFGAWVRVEN-DQGEERVFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I+V P GE TYEIL + + Sbjct: 120 SIDSPVARALIGKQVDDEITVQTPNGEATYEILAIRY 156 >gi|118602845|ref|YP_904060.1| transcription elongation factor GreA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|189042247|sp|A1AXD2|GREA_RUTMC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118567784|gb|ABL02589.1| transcription elongation factor GreA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 158 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T G ++ EL + RPRII+ I ARA+GDL ENAEY AAKE Q EG Sbjct: 1 MENIPMTVFGAKVLEAELLKLKNVSRPRIIENIVTARAHGDLKENAEYHAAKEEQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+ ++R +VID++ ++ D R FG T++L+ + Y+IVG+ EAD+ G + Sbjct: 61 RIKEVESKLSRMQVIDVTKLNQDGRCVFGTTITLMNIEDDSETTYKIVGEDEADIILGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIA AL+G E GD ++V AP G+ YE+L V +I Sbjct: 121 SCHSPIASALMGNEEGDEVTVKAPKGDIVYEVLSVEYI 158 >gi|323705605|ref|ZP_08117179.1| GreA/GreB family elongation factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535082|gb|EGB24859.1| GreA/GreB family elongation factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 157 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 99/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A +E ++ A+VID ++ D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEDFKEEAEYTIVGSTEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +AL+GK++GD ISV P G ++L++ Sbjct: 121 SDESPIGKALLGKKVGDTISVEVPAGIIKLKVLEI 155 >gi|222824365|ref|YP_002575939.1| transcription elongation factor GreA [Campylobacter lari RM2100] gi|254799551|sp|B9KDP9|GREA_CAMLR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222539586|gb|ACM64687.1| transcription elongation factor GreA [Campylobacter lari RM2100] Length = 161 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 106/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P++ G++K+++EL ++ ERP++++ I AR++GDL ENAEY AA+E Q EG Sbjct: 1 MQKEPMSKYGYEKLEKELEHLKKVERPKVVEEIDIARSHGDLKENAEYHAAREKQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL ++I+RA++ID ++ D + FG+ V + + S + Y IVG E +++ G +S Sbjct: 61 KIAELGDLISRAQIIDPASYEHDSVKFGSCVVVEDLESEKQSTYTIVGVNEGNLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIARA++GK+ GD V P GE +EI+ + + Sbjct: 121 INSPIARAMLGKKEGDDFKVRLPKGESEFEIISIEY 156 >gi|330830899|ref|YP_004393851.1| transcription elongation factor GreA [Aeromonas veronii B565] gi|328806035|gb|AEB51234.1| transcription elongation factor GreA [Aeromonas veronii B565] Length = 153 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 115/153 (75%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EGR+ E+ Sbjct: 1 MTVRGAEKLREELDYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ L+S++SP Sbjct: 61 EAKLSNAQVIDVTKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKE+ D+ V P G+ YE+L+V +I Sbjct: 121 IARALIGKEVDDVAIVKTPAGDVEYEVLEVAYI 153 >gi|312884007|ref|ZP_07743724.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC BAA-2122] gi|309368465|gb|EFP96000.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC BAA-2122] Length = 157 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGELKLRDELDRLLK-LRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FGATV+L++ ++ D+K YQIVGD EAD++SGL+ Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGATVTLIDCDTEDEKTYQIVGDDEADIKSGLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGG++ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDSVQYI 157 >gi|332140822|ref|YP_004426560.1| Transcription elongation factor GreA [Alteromonas macleodii str. 'Deep ecotype'] gi|327550844|gb|AEA97562.1| Transcription elongation factor GreA [Alteromonas macleodii str. 'Deep ecotype'] Length = 153 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M + ++ FG TV+++ +S ++ Y+IVGD EAD+++ L+S++SP Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDSDEETTYRIVGDDEADIKNNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D +++ P G EI++V +I Sbjct: 121 IARGLIGKELDDTVTIQTPSGTVEVEIIEVEYI 153 >gi|237745681|ref|ZP_04576161.1| GreA transcription elongation factor [Oxalobacter formigenes HOxBLS] gi|229377032|gb|EEO27123.1| GreA transcription elongation factor [Oxalobacter formigenes HOxBLS] Length = 158 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 119/158 (75%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IPVT +G +++EL + ++R +I AI+EAR++GDLSENAEY AAKE Q EG Sbjct: 1 MSSIPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AELE ++ A+VID +T++ + RI F ATV+L + +G+K +YQIVG+ EAD++ + Sbjct: 61 RIAELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SP+ARALIG+E GD++ VNAP G + YEIL+VL+I Sbjct: 121 SITSPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158 >gi|307579424|gb|ADN63393.1| transcription elongation factor GreA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 154 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISSP Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153 >gi|261344526|ref|ZP_05972170.1| transcription elongation factor GreB [Providencia rustigianii DSM 4541] gi|282567439|gb|EFB72974.1| transcription elongation factor GreB [Providencia rustigianii DSM 4541] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + +++ R+ FGA V L + ++G+ + +++VG E D + Sbjct: 61 RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNGNIRIFRLVGADEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D + V+ PGG+ TY +L++ + Sbjct: 120 SIDSPVARALIGKRVDDEVVVSTPGGQVTYFVLEISY 156 >gi|251771869|gb|EES52443.1| transcription elongation factor GreA [Leptospirillum ferrodiazotrophum] Length = 158 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 108/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G+ K+Q+EL ++ +R + I+ I+EARA+GDLSENAEY AAKE Q+ EG Sbjct: 1 MQQTPMTKEGYAKLQEELERLKKVDRTKNIQDIAEARAHGDLSENAEYHAAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ A V+ + DR+ FGATV+L ++G++K Y +VG +E D++ G +S Sbjct: 61 RIKELEAKLSTAIVVSSAHQDRDRVTFGATVTLKNTSTGEEKTYTLVGQEEVDLKRGRLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP+ +AL+G +G+ + + P GE YE+ ++ + Sbjct: 121 VASPVGKALVGHRVGENVLIRVPAGEIEYEVCRIDY 156 >gi|188575985|ref|YP_001912914.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae PXO99A] gi|289663383|ref|ZP_06484964.1| transcription elongation factor GreA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668838|ref|ZP_06489913.1| transcription elongation factor GreA [Xanthomonas campestris pv. musacearum NCPPB4381] gi|188520437|gb|ACD58382.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK GD ++++AP G++ YE++ V ++ Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153 >gi|15837710|ref|NP_298398.1| transcription elongation factor GreA [Xylella fastidiosa 9a5c] gi|11279753|pir||D82723 transcription elongation factor XF1108 [imported] - Xylella fastidiosa (strain 9a5c) gi|9106063|gb|AAF83918.1|AE003946_9 transcriptional elongation factor [Xylella fastidiosa 9a5c] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 79/153 (51%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ AEVID++ ++ G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISSP Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGK+ GD I + AP G + YE++ V +I Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153 >gi|299769004|ref|YP_003731030.1| transcription elongation factor GreA [Acinetobacter sp. DR1] gi|298699092|gb|ADI89657.1| transcription elongation factor GreA [Acinetobacter sp. DR1] Length = 158 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+ ID+ T+ R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|209364053|ref|YP_001424721.2| transcription elongation factor [Coxiella burnetii Dugway 5J108-111] gi|212212334|ref|YP_002303270.1| transcription elongation factor [Coxiella burnetii CbuG_Q212] gi|212218695|ref|YP_002305482.1| transcription elongation factor [Coxiella burnetii CbuK_Q154] gi|215919153|ref|NP_820273.2| transcription elongation factor [Coxiella burnetii RSA 493] gi|206584037|gb|AAO90787.2| transcription elongation factor [Coxiella burnetii RSA 493] gi|207081986|gb|ABS78133.2| transcription elongation factor [Coxiella burnetii Dugway 5J108-111] gi|212010744|gb|ACJ18125.1| transcription elongation factor [Coxiella burnetii CbuG_Q212] gi|212012957|gb|ACJ20337.1| transcription elongation factor [Coxiella burnetii CbuK_Q154] Length = 173 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q E Sbjct: 15 MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 74 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E + ++IDIS + ++ FGATV+L+ + + YQI+G EA+++ Sbjct: 75 GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 134 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP ARA+IGK + D+I V P G YEI+ V ++ Sbjct: 135 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 173 >gi|303248722|ref|ZP_07334975.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans JJ] gi|302489887|gb|EFL49815.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans JJ] Length = 162 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D IP+T +GF ++++EL ++ ERP +I AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MDSIPITVQGFKRLERELERLKK-ERPEVILAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINFIESRMPRFNVIDLATLDGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ +AL+GK GD I V AP G+ YEI+ + + Sbjct: 120 ILSPVGQALLGKYEGDEIVVEAPRGKINYEIISIAF 155 >gi|262278055|ref|ZP_06055840.1| transcription elongation factor [Acinetobacter calcoaceticus RUH2202] gi|262258406|gb|EEY77139.1| transcription elongation factor [Acinetobacter calcoaceticus RUH2202] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + ID+ T+ R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAVQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+ K GD + + P GE YEI+ V ++ Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158 >gi|328957198|ref|YP_004374584.1| transcription elongation factor GreA [Carnobacterium sp. 17-4] gi|328673522|gb|AEB29568.1| transcription elongation factor GreA [Carnobacterium sp. 17-4] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MIEKVYPMTLDGKQKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD +GL Sbjct: 61 EGRVTTIENMLRFSEIIDNSNTATDEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFNGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK++G ++ PGG+ I+++ Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFGTPGGDMFVRIVEIS 157 >gi|237752951|ref|ZP_04583431.1| transcription elongation factor GreA [Helicobacter winghamensis ATCC BAA-430] gi|229375218|gb|EEO25309.1| transcription elongation factor GreA [Helicobacter winghamensis ATCC BAA-430] Length = 159 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 99/152 (65%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++K+ EL+ ++ ERP I I AR +GDL ENAEY AA+E Q + R+ E Sbjct: 3 PMTEYGYNKLITELKNLKEVERPNNIIEIDTAREHGDLKENAEYHAARERQLFLDARINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A VID +T+ D+++FG+T++L + ++ + Y IVG E++ + GL+S SP Sbjct: 63 LTQLVAEARVIDPATLPHDKVSFGSTITLEDLDTEENYTYTIVGATESNPEKGLISYHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ L+GK +GD ++V P G YEIL++ + Sbjct: 123 LAKQLLGKIVGDEVAVTLPKGRVDYEILEITY 154 >gi|167626378|ref|YP_001676878.1| transcription elongation factor GreA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668809|ref|ZP_04756387.1| GreA/GreB family elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877341|ref|ZP_05250051.1| transcriptional elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|259647641|sp|B0TYL2|GREA_FRAP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167596379|gb|ABZ86377.1| GreA/GreB family elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843362|gb|EET21776.1| transcriptional elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 160 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 111/155 (71%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 ++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR+ Sbjct: 5 RVPMTPAGEQALRAELSRLKKTERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGRI 64 Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ YQIVG+ EAD+ + +S+ Sbjct: 65 KDIESKLSNAQVIDVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNHKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P+ARALI KE+GD I ++ P G+ TYEI+ V + Sbjct: 125 VAPLARALIKKEVGDEIILDTPKGKVTYEIVDVEY 159 >gi|323495923|ref|ZP_08100991.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326] gi|323319139|gb|EGA72082.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157 >gi|304315887|ref|YP_003851032.1| transcription elongation factor GreA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777389|gb|ADL67948.1| transcription elongation factor GreA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A +E ++ A+VID ++ D+++ G TV + ++ ++ Y IVG EAD + + Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEEFKEESEYTIVGSTEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +ALIGK++GD +SV P G ++L++ Sbjct: 121 SDESPIGKALIGKKVGDSVSVEVPAGIIKLKVLEI 155 >gi|152998029|ref|YP_001342864.1| transcription elongation factor GreA [Marinomonas sp. MWYL1] gi|150838953|gb|ABR72929.1| transcription elongation factor GreA [Marinomonas sp. MWYL1] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G ++++EL + RPR+I I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MKKVPMTVEGEARLREELNHLKTVVRPRVIADIATAREHGDLKENAEYHAAREEQGFAEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++VID+ + ++ FG TV+L ++ + Y+IVGD EADV+ + Sbjct: 61 RIKEIEGKLADSQVIDVKALPASSKVIFGTTVTLFNVDTEETVTYKIVGDDEADVKEKKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SPIA+A+IGKE GD +++ P GE YEI +V ++ Sbjct: 121 SYASPIAKAIIGKEEGDEVAIQVPSGEVVYEIEKVEYL 158 >gi|118594565|ref|ZP_01551912.1| GreA/GreB family elongation factor [Methylophilales bacterium HTCC2181] gi|118440343|gb|EAV46970.1| GreA/GreB family elongation factor [Methylophilales bacterium HTCC2181] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +I +T G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q EG Sbjct: 1 MAQIHMTRNGLEALKKELQQLKSVDRPAIIEAIAEARAQGDLSENAEYESAKEKQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++E I++AEVID + + R FGAT+ L + ++ K +QIVGD E+ ++ + Sbjct: 61 RLADIEAKISQAEVIDPANLKAEGRCVFGATIELEDLDTEKKSTFQIVGDDESSIKDNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SP+A+ALIGKE GD++ +PGG K+++IL+VL+I Sbjct: 121 SINSPLAKALIGKEAGDVVEFESPGGIKSFDILRVLYI 158 >gi|58337782|ref|YP_194367.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227904432|ref|ZP_04022237.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC 4796] gi|58255099|gb|AAV43336.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227867807|gb|EEJ75228.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC 4796] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K++ EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLEAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157 >gi|315303245|ref|ZP_07873892.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596] gi|313628385|gb|EFR96871.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596] Length = 175 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 92/152 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ VE G ++ Y IVG EAD G +S S Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFVELPDGVEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIQKIT 173 >gi|167036744|ref|YP_001664322.1| transcription elongation factor GreA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039463|ref|YP_001662448.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514] gi|256751867|ref|ZP_05492739.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus CCSD1] gi|300915431|ref|ZP_07132744.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561] gi|307266258|ref|ZP_07547799.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307725211|ref|YP_003904962.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513] gi|320115167|ref|YP_004185326.1| transcription elongation factor GreA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326391992|ref|ZP_08213492.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus JW 200] gi|238687609|sp|B0K5B9|GREA_THEPX RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238687705|sp|B0KCE3|GREA_THEP3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166853703|gb|ABY92112.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514] gi|166855578|gb|ABY93986.1| transcription elongation factor GreA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749274|gb|EEU62306.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus CCSD1] gi|300888491|gb|EFK83640.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561] gi|306918708|gb|EFN48941.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii Rt8.B1] gi|307582272|gb|ADN55671.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513] gi|319928258|gb|ADV78943.1| transcription elongation factor GreA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325991960|gb|EGD50452.1| transcription elongation factor GreA [Thermoanaerobacter ethanolicus JW 200] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +AL+GK++GD++SV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIIKLKILEIR 156 >gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus thermodenitrificans NG80-2] gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16] gi|166200664|sp|A4IR71|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans NG80-2] gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16] Length = 158 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 96/154 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE +I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S Sbjct: 65 IQMLETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA++LIG +GD ++V PGGE +I+ V Sbjct: 125 DSPIAKSLIGHRVGDEVTVQTPGGEMLVKIVAVK 158 >gi|319787362|ref|YP_004146837.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis 11-1] gi|317465874|gb|ADV27606.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis 11-1] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG ++++EL + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+ +L Sbjct: 1 MTLKGAQRLREELDHLKTVKRPEVIAAIAEARGHGDLKENAEYHAAREQQGFIEGRIKQL 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ A++ID++ ++ G ++ FGATV+L + + ++ YQIVGD EAD++ GL++ISSP Sbjct: 61 ESELSHADLIDVTKLNAGSKVVFGATVTLADVETDEEVRYQIVGDLEADIKQGLIAISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +ARALIGKE GD I ++AP G++ YEI+ V ++ Sbjct: 121 VARALIGKEEGDAIVIDAPAGQREYEIVSVEYL 153 >gi|163790351|ref|ZP_02184783.1| transcription elongation factor GreA [Carnobacterium sp. AT7] gi|159874422|gb|EDP68494.1| transcription elongation factor GreA [Carnobacterium sp. AT7] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MIEKVYPMTLDGKKKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD GL Sbjct: 61 EGRVTTIENMLRFSEIIDNSKTAADEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFKGL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK++G ++ PGG+ +I+++ Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFATPGGDMFVKIVEIS 157 >gi|256829409|ref|YP_003158137.1| transcription elongation factor GreA [Desulfomicrobium baculatum DSM 4028] gi|256578585|gb|ACU89721.1| transcription elongation factor GreA [Desulfomicrobium baculatum DSM 4028] Length = 162 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++IP++ +GF ++++EL ++ ERP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MNRIPISVEGFKRLEKELEDLKK-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ +E+ + R EVIDI T+ DR FGATV++ + + ++K Y ++G EAD G +S Sbjct: 60 RISHIESRMIRFEVIDIDTLQSDRAVFGATVTVEDVETEERKTYTLLGADEADHTKGTIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ RAL+GK+ GD ISV P G YE++ V ++ Sbjct: 120 IESPVGRALLGKQEGDEISVQVPKGRVDYEVISVSFL 156 >gi|56421082|ref|YP_148400.1| transcription elongation factor GreA [Geobacillus kaustophilus HTA426] gi|261418437|ref|YP_003252119.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61] gi|297529289|ref|YP_003670564.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3] gi|319767603|ref|YP_004133104.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52] gi|81346788|sp|Q5KWV4|GREA_GEOKA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56380924|dbj|BAD76832.1| transcription elongation factor [Geobacillus kaustophilus HTA426] gi|261374894|gb|ACX77637.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61] gi|297252541|gb|ADI25987.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3] gi|317112469|gb|ADU94961.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52] Length = 158 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 98/154 (63%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LEN+I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S Sbjct: 65 IQMLENMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA++L+G+ +GD ++V PGGE +I+ V Sbjct: 125 DSPIAKSLLGRRVGDEVTVQTPGGEMLVKIVAVK 158 >gi|294142073|ref|YP_003558051.1| transcription elongation factor GreA [Shewanella violacea DSS12] gi|293328542|dbj|BAJ03273.1| transcription elongation factor GreA [Shewanella violacea DSS12] Length = 158 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ ++ID++ M + RI FG TV+++ + ++ Y+IVG+ EA+++ L+ Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENNGRIIFGTTVTILNVETEEESTYRIVGEDEANIKDNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK L D +++ PGG YEI+ V +I Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGITEYEIIAVKYI 158 >gi|289579209|ref|YP_003477836.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus Ab9] gi|297545389|ref|YP_003677691.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528922|gb|ADD03274.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus Ab9] gi|296843164|gb|ADH61680.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +AL+GK++GD++SV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIINLKILEIR 156 >gi|163750815|ref|ZP_02158050.1| transcription elongation factor GreA [Shewanella benthica KT99] gi|161329510|gb|EDQ00504.1| transcription elongation factor GreA [Shewanella benthica KT99] Length = 158 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ ++ID++ M RI FG TV+++ + D+ Y+IVG+ EA+++ L+ Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENSGRIIFGTTVTILNVETEDESTYRIVGEDEANIKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GK L D +++ PGG YEI+ V +I Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGTTDYEIIAVEYI 158 >gi|89072566|ref|ZP_01159138.1| transcription elongation factor GreA [Photobacterium sp. SKA34] gi|90580532|ref|ZP_01236337.1| transcription elongation factor GreA [Vibrio angustum S14] gi|89051670|gb|EAR57123.1| transcription elongation factor GreA [Photobacterium sp. SKA34] gi|90438190|gb|EAS63376.1| transcription elongation factor GreA [Photobacterium angustum S14] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLRSELEVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID+ TM ++ FG T++L++ ++ ++ Y IVGD EA+++ L+ Sbjct: 60 QIRDIEYKLSVAQIIDVKTMPNTGKVIFGTTITLLDLDTDNEVTYCIVGDDEANIKENLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG+K +EI++V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVAITTPGGQKEFEIVEVKYI 157 >gi|57339826|gb|AAW49900.1| hypothetical protein FTT1313 [synthetic construct] Length = 195 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 30 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 89 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 90 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 149 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 150 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 185 >gi|295698488|ref|YP_003603143.1| transcription elongation factor [Candidatus Riesia pediculicola USDA] gi|291157052|gb|ADD79497.1| transcription elongation factor [Candidatus Riesia pediculicola USDA] Length = 162 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T G K+++EL + + +RP II ++ EAR +GDL ENAEYQAA+E Q+ EG Sbjct: 1 MKRVPMTLNGEKKLRKELEFLKNVKRPEIITSLIEARKHGDLKENAEYQAAREEQSFYEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A VID++ + + + FG+TV+L + S YQIVG+ EAD + L+ Sbjct: 61 RIKEIERKLLNAHVIDVTQLKEKNHVTFGSTVTLKDNISEKISIYQIVGEDEADFKENLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIA+ +IGK+ GD++ +N P G+ Y IL+V +I Sbjct: 121 SFCSPIAKGIIGKKEGDVVKINTPNGKAIYTILEVKYI 158 >gi|254369654|ref|ZP_04985664.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC022] gi|157122613|gb|EDO66742.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC022] Length = 160 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGKQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159 >gi|298529319|ref|ZP_07016722.1| transcription elongation factor GreA [Desulfonatronospira thiodismutans ASO3-1] gi|298510755|gb|EFI34658.1| transcription elongation factor GreA [Desulfonatronospira thiodismutans ASO3-1] Length = 165 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D IP++ +GF +++QEL Q ERP +I+AI EAR GDL ENA Y AA+E Q L E Sbjct: 1 MSDSIPISEEGFARLKQELEKLQA-ERPEVIQAIKEAREEGDLKENAGYDAARERQGLLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A++ + + +ID+ TM G+++ +GATV + ++G+ K Y ++G E D + Sbjct: 60 AKIAQITSRMPMFNIIDLDTMDGNKVCYGATVEIENVDTGEVKKYTLLGPDETDFVPDSL 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ARAL+G+E+GD VNAP G+ YEIL + + Sbjct: 120 SVFSPLARALMGREVGDETVVNAPKGKIEYEILDIKF 156 >gi|220904317|ref|YP_002479629.1| transcription elongation factor GreA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254799558|sp|B8IZM4|GREA_DESDA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219868616|gb|ACL48951.1| transcription elongation factor GreA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 162 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +G+ +++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MTSIPISVQGYKALEEELARLKS-ERPEIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + +VID+ T+SGD++ FGATV L + +SG+ K Y I+G EAD G +S Sbjct: 60 RIKYIESRMALYQVIDLDTLSGDKVIFGATVDLEDVDSGEAKTYTILGPDEADPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ +AL+G+E GD +SV P G TYEI+ V + Sbjct: 120 FLSPVGQALLGREEGDEVSVEIPRGRVTYEIIGVSF 155 >gi|239827818|ref|YP_002950442.1| transcription elongation factor GreA [Geobacillus sp. WCH70] gi|239808111|gb|ACS25176.1| transcription elongation factor GreA [Geobacillus sp. WCH70] Length = 159 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 1 MV---DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M+ + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q Sbjct: 1 MMANEKQFPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD Sbjct: 61 FVEARIQTLENMIRNAVIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFE 120 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S SPIA++L+G+ +G+ ++V PGGE +I+ V Sbjct: 121 GKISNDSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 159 >gi|78357555|ref|YP_389004.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219960|gb|ABB39309.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 235 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF+ ++++L +Q ERP +I+AI EAR GDLSENA Y AA+E Q + E Sbjct: 73 MSSIPISVEGFELVKRDLERLKQ-ERPAVIQAIKEAREEGDLSENAGYDAARERQGMLEA 131 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID+ T+ G+R+ +GAT+ L + +G+ + Y +VG E D G +S Sbjct: 132 RIGNIESRMARFNVIDMRTLGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSIS 191 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A+A++GKE GD + V+AP G+ YEI+ V + Sbjct: 192 VLSPVAKAVLGKEEGDEVVVDAPRGKIHYEIVSVSF 227 >gi|52081213|ref|YP_080004.1| transcription elongation factor GreA [Bacillus licheniformis ATCC 14580] gi|52786594|ref|YP_092423.1| transcription elongation factor GreA [Bacillus licheniformis ATCC 14580] gi|319644819|ref|ZP_07999052.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2] gi|81384952|sp|Q65GT4|GREA_BACLD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|52004424|gb|AAU24366.1| transcription elongation factor [Bacillus licheniformis ATCC 14580] gi|52349096|gb|AAU41730.1| GreA [Bacillus licheniformis ATCC 14580] gi|317392628|gb|EFV73422.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2] Length = 158 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 102/158 (64%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T G K+++EL + + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTETGKKKLEEELEYLKTVKRKEVVERIKVARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N+I A++I+ + D ++ G TV+ E G++++Y IVG EAD G Sbjct: 61 VEGRITTLDNMIRNAKIIEDDGANSDIVSLGKTVTFTELPDGEEESYTIVGSAEADPFEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK++GD ++V PGGE +I+++ Sbjct: 121 KISNDSPIAKSLLGKQVGDEVTVQTPGGEMLVKIVKIS 158 >gi|212638597|ref|YP_002315117.1| transcription elongation factor GreA [Anoxybacillus flavithermus WK1] gi|212560077|gb|ACJ33132.1| Transcription elongation factor GreA [Anoxybacillus flavithermus WK1] Length = 161 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 102/156 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 6 MEKEYPMTKAGKEKLEQELEYLKTVKRKEVVERIQIARSFGDLSENSEYDAAKDEQAFVE 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LEN+I A++I+ S D ++ G TV+ VE G++++Y IVG EAD G + Sbjct: 66 SRIQMLENMIRNAKIIEEDLESTDIVSLGRTVTFVELPDGEEESYTIVGSAEADPFEGKI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPIA++LIG+ +G+ ++V+ PGG+ +I+ V Sbjct: 126 SNDSPIAKSLIGRRVGEEVTVHTPGGDMVVKIIAVK 161 >gi|313618851|gb|EFR90728.1| transcription elongation factor GreA [Listeria innocua FSL S4-378] Length = 175 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173 >gi|289434776|ref|YP_003464648.1| transcription elongation factor GreA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171020|emb|CBH27562.1| transcription elongation factor GreA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313637769|gb|EFS03123.1| transcription elongation factor GreA [Listeria seeligeri FSL S4-171] Length = 160 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 92/152 (60%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ VE G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAESHNGLVTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158 >gi|46581647|ref|YP_012455.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. Hildenborough] gi|120601195|ref|YP_965595.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4] gi|81566039|sp|Q725M4|GREA_DESVH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200661|sp|A1V9Q2|GREA_DESVV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|46451070|gb|AAS97715.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. Hildenborough] gi|120561424|gb|ABM27168.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4] gi|311235288|gb|ADP88142.1| GreA/GreB family elongation factor [Desulfovibrio vulgaris RCH1] Length = 163 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF ++++EL ++ ERP +I+AI EAR GDLSENA Y AA+E Q + E Sbjct: 1 MSSIPISVEGFKQLEKELDRLKK-ERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + + VID+ T+SGD++ FGATV + + SG++K Y ++G EAD G +S Sbjct: 60 RIKYIESRMAQFNVIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ARA++GKE GD I V+AP G+ YEI+ + ++ Sbjct: 120 VQSPVARAMLGKEEGDEIVVDAPRGKIHYEIVSIRFL 156 >gi|254284149|ref|ZP_04959117.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B] gi|219680352|gb|EED36701.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B] Length = 153 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G +++EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTAEGERALREELERLKKVDRPRITQAIAEAREHGDLKENAEYHAAREQQSFAEGRIKDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E+ ++ A+VID+S + ++ FG TV L+ + Y+IVG+ EADV++ ++S+ SP Sbjct: 61 EHKLSHAQVIDVSAIAHTGKVIFGTTVDLINLDDDSTVTYRIVGEDEADVRNNMISVGSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARAL+GK GD + V APGG+ YEI QV + Sbjct: 121 IARALVGKSEGDEVVVRAPGGDICYEIDQVRHV 153 >gi|295425284|ref|ZP_06817987.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] gi|295065060|gb|EFG55965.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] Length = 158 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K++ ELR + +RP +IK I AR+YGDLSEN+EY AAK+ Q+ Sbjct: 1 MAEKSFPMTAEGKEKLEAELRDLKLVKRPEVIKRIKVARSYGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+V+D ++ + +A G TV+ E D + Y IVG E+D +G Sbjct: 61 EDRIAQVEEMLKYAQVVDADSVDPNEVAVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ G+ +S+ PGG+ I +V Sbjct: 121 ISNDSPIAQALIGKKKGETVSITTPGGKFDVVINKVE 157 >gi|123444179|ref|YP_001008149.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091140|emb|CAL14023.1| transcription elongation factor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 165 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + SG+++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-ESGEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL + + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156 >gi|116872925|ref|YP_849706.1| transcription elongation factor GreA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458483|sp|A0AIU5|GREA_LISW6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116741803|emb|CAK20927.1| transcription elongation factor GreA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 160 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLEGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158 >gi|254516627|ref|ZP_05128686.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3] gi|219675050|gb|EED31417.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3] Length = 154 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTAQGEKALRAELEQLKKVDRPRISQAIAEAREHGDLKENAEYHAAREQQSFAEGRIMDI 60 Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++++ ++ FG TV L+ + + Y+IVGD EAD + L+S++SP Sbjct: 61 EGKLSHAQVIDVTSIPCTGKVIFGVTVDLINVENDESVVYRIVGDDEADARQNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKE GD++ V APGG++ YEI QV + Sbjct: 121 IARALIGKEEGDVVVVRAPGGDREYEIDQVRHL 153 >gi|156975672|ref|YP_001446579.1| transcription elongation factor GreA [Vibrio harveyi ATCC BAA-1116] gi|156527266|gb|ABU72352.1| hypothetical protein VIBHAR_03407 [Vibrio harveyi ATCC BAA-1116] Length = 157 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|323466134|gb|ADX69821.1| Transcription elongation factor [Lactobacillus helveticus H10] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PG + I V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157 >gi|318607818|emb|CBY29316.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica Y11] Length = 165 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + SG+++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVEN-ESGEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILEIRY 156 >gi|90416147|ref|ZP_01224079.1| transcription elongation factor GreA [marine gamma proteobacterium HTCC2207] gi|90331872|gb|EAS47086.1| transcription elongation factor GreA [marine gamma proteobacterium HTCC2207] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL +E RP II+AI+ AR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MQKAPMTVEGEIALREELHHLIKEVRPTIIEAIATAREHGDLKENAEYHAAREQQSFTEG 60 Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ +VIDI+ + GDR+ FG TV+++ + Y+IVGD EADV++ + Sbjct: 61 RIQDIEGKLSNIQVIDINKIPHGDRVVFGTTVTIINLDLDKTVTYKIVGDDEADVKACKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SPIARAL+GKE+ +++ V AP G+ YEI V +I Sbjct: 121 SYQSPIARALMGKEISEVVVVKAPSGDVEYEIDNVEFI 158 >gi|319651649|ref|ZP_08005776.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2] gi|317396716|gb|EFV77427.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 98/152 (64%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 FPMTQAGKEKLEQELEYLKSVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++I M+GD + G +V+ VE GD++ Y IVG EAD G +S S Sbjct: 67 TLENMIRNAKIIQEEEMAGDIVGLGRSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++LIG+ +GD ++V PGGE I+ + Sbjct: 127 PIAKSLIGRTVGDEVTVQTPGGEMNVRIVSIK 158 >gi|260775433|ref|ZP_05884330.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC BAA-450] gi|260608614|gb|EEX34779.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC BAA-450] Length = 157 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR L+GK GD + ++ PGG++ +EI V ++ Sbjct: 120 SVSSPIARGLVGKMEGDEVVISTPGGDRDFEIDSVEYV 157 >gi|90022372|ref|YP_528199.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] gi|89951972|gb|ABD81987.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] Length = 160 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q EGR+ Sbjct: 5 KYPMTVAGELALREELERLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 64 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E+E ++ A+VID+ T+ ++ FG TV L+ + + Y IVG+ EA ++ +S+ Sbjct: 65 QEIEAKLSNAQVIDVKTIPHSGKVIFGTTVDLINVETDEAITYTIVGEDEASIKLNKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGKE GD+ V APGGE YEI V I Sbjct: 125 TSPIARALIGKEEGDVAVVRAPGGEIEYEIDSVKHI 160 >gi|299822858|ref|ZP_07054744.1| transcription elongation factor GreA [Listeria grayi DSM 20601] gi|299816387|gb|EFI83625.1| transcription elongation factor GreA [Listeria grayi DSM 20601] Length = 168 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR +GDLSEN+EY +AK+ Q EGR+ Sbjct: 15 FPMTLEGKAKLETELHELKTVKRKEVVERIKIARGFGDLSENSEYDSAKDEQAFVEGRIT 74 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LEN+I A++ID S D + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 75 TLENMIRNAQIIDALDASNDLVTLGKTVTFTEVPDGDEEAYTIVGSAEADPFEGRISNDS 134 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+AL+G ++G+ + + PGGE T +I+ + Sbjct: 135 PIAKALLGHKIGEEVEIQTPGGEMTVKIIAIS 166 >gi|317484639|ref|ZP_07943542.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6] gi|316924113|gb|EFV45296.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6] Length = 160 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF ++QEL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MSSIPISKEGFQALEQELDRLKK-ERPHVIQAIKEAREEGDLKENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + VID+ST+S ++ FGATV++ + ++G+++ + ++G EAD G +S Sbjct: 60 RIKYIESRMALFNVIDLSTLSSEKAIFGATVTVEDADTGEEREFTLLGPDEADYAKGTIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ AL+GKE+GD I+VNAP G YEI+ + + Sbjct: 120 IQSPVGVALLGKEVGDEITVNAPRGRINYEIIDIQF 155 >gi|269961971|ref|ZP_06176326.1| transcription elongation factor GreA [Vibrio harveyi 1DA3] gi|269833294|gb|EEZ87398.1| transcription elongation factor GreA [Vibrio harveyi 1DA3] Length = 157 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|323492033|ref|ZP_08097198.1| transcription elongation factor GreA [Vibrio brasiliensis LMG 20546] gi|323313762|gb|EGA66861.1| transcription elongation factor GreA [Vibrio brasiliensis LMG 20546] Length = 157 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLREELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157 >gi|238758699|ref|ZP_04619873.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236] gi|238702996|gb|EEP95539.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236] Length = 165 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDSELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-ELEEQRTFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL + + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILAIRY 156 >gi|212702631|ref|ZP_03310759.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098] gi|212673903|gb|EEB34386.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098] Length = 164 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP++ +G+ ++++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E R+ Sbjct: 6 IPISKQGYKRLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+ + +VID+ +SGD++ FG+TV + + ++ + + Y I+G EA+ G +S S Sbjct: 65 YIESRMALYQVIDLDKLSGDKVIFGSTVEVEDVDTEESRTYTILGPDEAEPAKGSISFLS 124 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ +AL+GKE+GD +SV+ P G TYEI+ + + Sbjct: 125 PVGQALLGKEVGDEVSVDIPRGRVTYEIVDITF 157 >gi|326796869|ref|YP_004314689.1| transcription elongation factor GreA [Marinomonas mediterranea MMB-1] gi|326547633|gb|ADZ92853.1| transcription elongation factor GreA [Marinomonas mediterranea MMB-1] Length = 158 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G ++++EL + RPR+I I+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKKVPMTLEGESRLREELNHLKSVVRPRVIADIAEAREHGDLKENAEYHAAREEQGFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + ++VIDI +M ++ FGATV+L ++ + YQIVGD EADV+ + Sbjct: 61 RIKEIEGKLADSQVIDIKSMPHTGKVIFGATVTLYNVDTEETVTYQIVGDDEADVKQKKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SPIA+A+IGK D IS+N P GE YEI +V +I Sbjct: 121 SYASPIAKAIIGKHEEDEISINVPSGEVVYEIEKVEYI 158 >gi|332163327|ref|YP_004299904.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667557|gb|ADZ44201.1| transcription elongation factor GreB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862980|emb|CBX73113.1| transcription elongation factor greB [Yersinia enterocolitica W22703] Length = 165 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + SG+++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVEN-ESGEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|16800599|ref|NP_470867.1| transcription elongation factor GreA [Listeria innocua Clip11262] gi|16803536|ref|NP_465021.1| transcription elongation factor GreA [Listeria monocytogenes EGD-e] gi|46907724|ref|YP_014113.1| transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. F2365] gi|47095449|ref|ZP_00233059.1| transcription elongation factor GreA [Listeria monocytogenes str. 1/2a F6854] gi|217964358|ref|YP_002350036.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Listeria monocytogenes HCC23] gi|224500662|ref|ZP_03669011.1| transcription elongation factor GreA [Listeria monocytogenes Finland 1988] gi|224501564|ref|ZP_03669871.1| transcription elongation factor GreA [Listeria monocytogenes FSL R2-561] gi|226224097|ref|YP_002758204.1| transcription elongation factor GreA [Listeria monocytogenes Clip81459] gi|254824445|ref|ZP_05229446.1| transcription elongation factor greA [Listeria monocytogenes FSL J1-194] gi|254828270|ref|ZP_05232957.1| transcription elongation factor greA [Listeria monocytogenes FSL N3-165] gi|254829745|ref|ZP_05234400.1| transcription elongation factor GreA [Listeria monocytogenes 10403S] gi|254852120|ref|ZP_05241468.1| transcription elongation factor greA [Listeria monocytogenes FSL R2-503] gi|254898338|ref|ZP_05258262.1| transcription elongation factor GreA [Listeria monocytogenes J0161] gi|254912170|ref|ZP_05262182.1| transcription elongation factor GreA [Listeria monocytogenes J2818] gi|254931431|ref|ZP_05264790.1| transcription elongation factor greA [Listeria monocytogenes HPB2262] gi|254936498|ref|ZP_05268195.1| transcription elongation factor greA [Listeria monocytogenes F6900] gi|254993602|ref|ZP_05275792.1| transcription elongation factor GreA [Listeria monocytogenes FSL J2-064] gi|255017028|ref|ZP_05289154.1| transcription elongation factor GreA [Listeria monocytogenes FSL F2-515] gi|255022898|ref|ZP_05294884.1| transcription elongation factor GreA [Listeria monocytogenes FSL J1-208] gi|255027806|ref|ZP_05299792.1| transcription elongation factor GreA [Listeria monocytogenes FSL J2-003] gi|255029278|ref|ZP_05301229.1| transcription elongation factor GreA [Listeria monocytogenes LO28] gi|255521197|ref|ZP_05388434.1| transcription elongation factor GreA [Listeria monocytogenes FSL J1-175] gi|284801885|ref|YP_003413750.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578] gi|284995027|ref|YP_003416795.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923] gi|290893856|ref|ZP_06556834.1| transcription elongation factor greA [Listeria monocytogenes FSL J2-071] gi|315282402|ref|ZP_07870822.1| transcription elongation factor GreA [Listeria marthii FSL S4-120] gi|54037217|sp|P64278|GREA_LISIN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041327|sp|P64277|GREA_LISMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|67460875|sp|Q71ZH4|GREA_LISMF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799560|sp|B8DE15|GREA_LISMH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647647|sp|C1KVE3|GREA_LISMC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|16410925|emb|CAC99574.1| lmo1496 [Listeria monocytogenes EGD-e] gi|16414004|emb|CAC96762.1| lin1531 [Listeria innocua Clip11262] gi|46880993|gb|AAT04290.1| transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. F2365] gi|47016270|gb|EAL07193.1| transcription elongation factor GreA [Listeria monocytogenes str. 1/2a F6854] gi|217333628|gb|ACK39422.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Listeria monocytogenes HCC23] gi|225876559|emb|CAS05268.1| Putative transcription elongation factor GreA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600658|gb|EEW13983.1| transcription elongation factor greA [Listeria monocytogenes FSL N3-165] gi|258605422|gb|EEW18030.1| transcription elongation factor greA [Listeria monocytogenes FSL R2-503] gi|258609092|gb|EEW21700.1| transcription elongation factor greA [Listeria monocytogenes F6900] gi|284057447|gb|ADB68388.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578] gi|284060494|gb|ADB71433.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923] gi|290556573|gb|EFD90109.1| transcription elongation factor greA [Listeria monocytogenes FSL J2-071] gi|293582981|gb|EFF95013.1| transcription elongation factor greA [Listeria monocytogenes HPB2262] gi|293590143|gb|EFF98477.1| transcription elongation factor GreA [Listeria monocytogenes J2818] gi|293593681|gb|EFG01442.1| transcription elongation factor greA [Listeria monocytogenes FSL J1-194] gi|307571077|emb|CAR84256.1| greA [Listeria monocytogenes L99] gi|313608715|gb|EFR84544.1| transcription elongation factor GreA [Listeria monocytogenes FSL F2-208] gi|313613954|gb|EFR87678.1| transcription elongation factor GreA [Listeria marthii FSL S4-120] gi|328465535|gb|EGF36764.1| transcription elongation factor GreA [Listeria monocytogenes 1816] gi|328474861|gb|EGF45661.1| transcription elongation factor GreA [Listeria monocytogenes 220] gi|332311938|gb|EGJ25033.1| Transcription elongation factor [Listeria monocytogenes str. Scott A] Length = 160 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 158 >gi|239995761|ref|ZP_04716285.1| Transcription elongation factor GreA [Alteromonas macleodii ATCC 27126] Length = 153 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 111/153 (72%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++ Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M + ++ FG TV+++ ++ ++ Y+IVGD EAD+++ L+S++SP Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKNNLISVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D++++ P G EI++V +I Sbjct: 121 IARGLIGKELDDMVTIQTPAGAVEVEIIEVEYI 153 >gi|149192158|ref|ZP_01870378.1| transcription elongation factor GreA [Vibrio shilonii AK1] gi|148833998|gb|EDL51015.1| transcription elongation factor GreA [Vibrio shilonii AK1] Length = 157 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++++L + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQKLREDLDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ + +I FG+TV+L++ ++ ++ YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKLDNSGKIIFGSTVTLIDIDTDAEQTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG+K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVTIVTPGGQKDFEIDKVAYI 157 >gi|71278345|ref|YP_270131.1| transcription elongation factor GreA [Colwellia psychrerythraea 34H] gi|71144085|gb|AAZ24558.1| transcription elongation factor GreA [Colwellia psychrerythraea 34H] Length = 158 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G D + EL+ + E+RPRI+K I+ AR +GDL ENAEY AAKE Q EG Sbjct: 1 MIKYPMTLRGSDLLHDELKILKTEKRPRIVKDIATAREHGDLKENAEYHAAKEEQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID++ + ++ FG TV+L+ ++ + YQIVGD EAD ++G + Sbjct: 61 RIQDIEGRLCNAQVIDVTAIPNHGKVIFGTTVTLLNLDTEVEVTYQIVGDDEADFKTGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE+ I + PGG YEI+ V I Sbjct: 121 SVNSPIARGLIGKEVDSEIEITIPGGVVEYEIVSVEHI 158 >gi|157826502|ref|YP_001495566.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389] gi|229485905|sp|A8GUN3|GREA_RICB8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157801806|gb|ABV78529.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389] Length = 161 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 76/156 (48%), Positives = 114/156 (73%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E Sbjct: 1 MAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ VS Sbjct: 61 RIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SPIA+ALIGK +GDI+ V PGG K+YE++ + + Sbjct: 121 IASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 156 >gi|33152279|ref|NP_873632.1| transcription elongation factor GreB [Haemophilus ducreyi 35000HP] gi|71152092|sp|Q7VM42|GREB_HAEDU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|33148502|gb|AAP96021.1| transcription elongation factor [Haemophilus ducreyi 35000HP] Length = 162 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ +EERP++ +++SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + ++ID ++ FGA + L G+ Y+IVG E D + Sbjct: 61 RRIRFLSKRLEALQIIDYHPQQAGKVFFGAWIELENNE-GEINQYRIVGCDEFDPTKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D I V P G+ + I ++ + Sbjct: 120 SIDSPVARALIGKCVDDEIEVQTPTGKAVFYINKIWY 156 >gi|226327577|ref|ZP_03803095.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198] gi|225204103|gb|EEG86457.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198] Length = 159 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITRDGWYALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V+L + + + K +++VG E D + Sbjct: 61 RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLED-DDENVKTFRLVGPDEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ISV PGGE Y +L + + Sbjct: 120 SIDSPVARALIGKQVDDEISVQTPGGEVNYCVLSIKY 156 >gi|56708370|ref|YP_170266.1| transcription elongation factor GreA [Francisella tularensis subsp. tularensis SCHU S4] gi|89256763|ref|YP_514125.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica LVS] gi|110670840|ref|YP_667397.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis FSC198] gi|115315154|ref|YP_763877.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica OSU18] gi|118497261|ref|YP_898311.1| transcriptional elongation factor [Francisella tularensis subsp. novicida U112] gi|134302355|ref|YP_001122324.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis WY96-3418] gi|156502925|ref|YP_001428990.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010904|ref|ZP_02275835.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica FSC200] gi|187931963|ref|YP_001891948.1| transcriptional elongation factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194323563|ref|ZP_03057340.1| transcription elongation factor GreA family protein [Francisella tularensis subsp. novicida FTE] gi|208779054|ref|ZP_03246400.1| transcription elongation factor GreA family protein [Francisella novicida FTG] gi|224457500|ref|ZP_03665973.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|254368054|ref|ZP_04984074.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica 257] gi|254370993|ref|ZP_04986996.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254372634|ref|ZP_04988123.1| transcriptional elongation factor [Francisella tularensis subsp. novicida GA99-3549] gi|254875193|ref|ZP_05247903.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|290954459|ref|ZP_06559080.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica URFT1] gi|295312121|ref|ZP_06802932.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica URFT1] gi|81597269|sp|Q5NFC6|GREA_FRATT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122324847|sp|Q0BKZ4|GREA_FRATO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123094496|sp|Q2A2C7|GREA_FRATH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123359419|sp|Q14GS9|GREA_FRAT1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647642|sp|A7NDI1|GREA_FRATF RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647643|sp|B2SDF5|GREA_FRATM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647644|sp|A0Q5P2|GREA_FRATN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647645|sp|A4IZ52|GREA_FRATW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54113791|gb|AAV29529.1| NT02FT0408 [synthetic construct] gi|56604862|emb|CAG45946.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis SCHU S4] gi|89144594|emb|CAJ79913.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica LVS] gi|110321173|emb|CAL09329.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis FSC198] gi|115130053|gb|ABI83240.1| transcription elongation factor GreA [Francisella tularensis subsp. holarctica OSU18] gi|118423167|gb|ABK89557.1| transcriptional elongation factor [Francisella novicida U112] gi|134050132|gb|ABO47203.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134253864|gb|EBA52958.1| transcriptional elongation factor [Francisella tularensis subsp. holarctica 257] gi|151569234|gb|EDN34888.1| hypothetical protein FTBG_01615 [Francisella tularensis subsp. tularensis FSC033] gi|151570361|gb|EDN36015.1| transcriptional elongation factor [Francisella novicida GA99-3549] gi|156253528|gb|ABU62034.1| transcriptional elongation factor, GreA/GreB family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|187712872|gb|ACD31169.1| transcriptional elongation factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194322418|gb|EDX19899.1| transcription elongation factor GreA family protein [Francisella tularensis subsp. novicida FTE] gi|208744854|gb|EDZ91152.1| transcription elongation factor GreA family protein [Francisella novicida FTG] gi|254841192|gb|EET19628.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis MA00-2987] gi|282159989|gb|ADA79380.1| transcriptional elongation factor [Francisella tularensis subsp. tularensis NE061598] gi|328676750|gb|AEB27620.1| Transcription elongation factor GreA [Francisella cf. novicida Fx1] Length = 160 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G+ TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159 >gi|146308634|ref|YP_001189099.1| transcription elongation factor GreA [Pseudomonas mendocina ymp] gi|330504838|ref|YP_004381707.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01] gi|145576835|gb|ABP86367.1| transcription elongation factor GreA [Pseudomonas mendocina ymp] gi|328919124|gb|AEB59955.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01] Length = 158 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++EL + RP + +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGARALEEELAHLTKVRRPALSQAIAEARELGDLKENAEYHAAREEQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++++ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RVRDIEGRLQNAVIIDVTSIEHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKQGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARAL+GK GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALVGKSEGDVVGVQTPSGLVEYEIVEVRHI 158 >gi|310815067|ref|YP_003963031.1| transcription elongation factor GreA [Ketogulonicigenium vulgare Y25] gi|308753802|gb|ADO41731.1| transcription elongation factor GreA [Ketogulonicigenium vulgare Y25] Length = 156 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 123/156 (78%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GFDK+ EL+ + ERP II AI+EARA+GDLSENAEY +AKE Q+ EG Sbjct: 1 MEKIPLTRTGFDKLDVELKHLKSVERPAIIAAIAEARAHGDLSENAEYHSAKEKQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE +I+ AEVID S +SG I FGA V+LV++++ ++K YQIVG+ EADV++G ++ Sbjct: 61 RIKELEGVISLAEVIDTSRLSG-TIKFGAMVTLVDEDTDEEKAYQIVGEYEADVENGRLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++GD + V PGG+++YE+L +++ Sbjct: 120 IKSPLARALIGKDVGDSVEVRTPGGDRSYEVLNIVY 155 >gi|213027547|ref|ZP_03341994.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 145 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 66/145 (45%), Positives = 105/145 (72%), Gaps = 1/145 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E ++ A+ Sbjct: 1 MREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 60 Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGK Sbjct: 61 VIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGK 120 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 E D++ + PGG+ YE+L+V ++ Sbjct: 121 EQDDVVVIKTPGGDVEYEVLKVEYL 145 >gi|315641239|ref|ZP_07896316.1| transcription elongation factor GreA [Enterococcus italicus DSM 15952] gi|315483006|gb|EFU73525.1| transcription elongation factor GreA [Enterococcus italicus DSM 15952] Length = 157 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKAKLEQELEELKTVKRGEIIERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE +I A++ID + D ++ G TV+ VE GD++ Y IVG EAD SG Sbjct: 61 EGRITTLETMIRFAQIIDNDGVDQDEVSIGKTVTFVELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+L D ++++ PGG+ +I+ V Sbjct: 121 ISNDSPIAQALIGKKLNDEVTISTPGGDMPVKIISVK 157 >gi|161507838|ref|YP_001577802.1| transcription elongation [Lactobacillus helveticus DPC 4571] gi|160348827|gb|ABX27501.1| transcription elongation [Lactobacillus helveticus DPC 4571] Length = 158 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 EDRIAQVEEMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK+ G+ +S+ PG + I V Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157 >gi|229111852|ref|ZP_04241398.1| Transcription elongation factor greA [Bacillus cereus Rock1-15] gi|228671608|gb|EEL26906.1| Transcription elongation factor greA [Bacillus cereus Rock1-15] Length = 189 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175 >gi|307720542|ref|YP_003891682.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] gi|306978635|gb|ADN08670.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] Length = 165 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 108/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 + KI P+T G++K+Q E++ ++ +RP ++KAI EA +GDL ENAEY AAKE Q + Sbjct: 1 MQKIEPMTLFGYEKLQAEVKDLKEVKRPGVVKAIEEALEHGDLKENAEYHAAKEQQKNID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL+ I+ ++++D + + +++FG+TV + ++ ++ +Y IVG E++ GL+ Sbjct: 61 NRLAELQEILGNSQIVDPTELEHAKVSFGSTVVMTNLDTDEEVSYTIVGGCESNPDIGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+GKE GD + V PGGEK +EI +V + Sbjct: 121 SFNSPLAKQLLGKEEGDEVKVRLPGGEKEFEIDEVKY 157 >gi|294501340|ref|YP_003565040.1| transcription elongation factor GreA [Bacillus megaterium QM B1551] gi|295706687|ref|YP_003599762.1| transcription elongation factor GreA [Bacillus megaterium DSM 319] gi|294351277|gb|ADE71606.1| transcription elongation factor GreA [Bacillus megaterium QM B1551] gi|294804346|gb|ADF41412.1| transcription elongation factor GreA [Bacillus megaterium DSM 319] Length = 158 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 102/158 (64%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AK+ Q Sbjct: 1 MAQEKVFPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ + ++ G +V+ VE GD++ Y IVG EAD G Sbjct: 61 VEGRITTLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK++GD ++V PGG+ + +I+ V Sbjct: 121 KISNDSPIAKSLMGKQIGDQVTVQTPGGDMSVKIVSVK 158 >gi|254456594|ref|ZP_05070023.1| transcription elongation factor [Candidatus Pelagibacter sp. HTCC7211] gi|207083596|gb|EDZ61022.1| transcription elongation factor [Candidatus Pelagibacter sp. HTCC7211] Length = 158 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T G +K+++EL + ++++RP I+ AI+EAR++GDL ENAEY AAKE Q+ NEG Sbjct: 1 MDKEPITLNGLNKLKEELIFLKEKKRPEIVAAIAEARSHGDLKENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+++II RA VID++ ++ D ++ FG+TV L ++G+K +Y+IVG EAD++ L+ Sbjct: 61 RITEIDDIIARANVIDVTKLNNDGKVIFGSTVFLENLDNGEKISYKIVGKDEADLKQKLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI R LIGK D++ + P G K +EI V +I Sbjct: 121 FFQSPIGRGLIGKNKNDLVEITTPAGIKNFEIKDVQYI 158 >gi|323144905|ref|ZP_08079468.1| transcription elongation factor GreA [Succinatimonas hippei YIT 12066] gi|322415303|gb|EFY06074.1| transcription elongation factor GreA [Succinatimonas hippei YIT 12066] Length = 191 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 109/161 (67%), Gaps = 5/161 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T++G +++EL + ERPRI+ AI+EAR++GDLSENAEY AAKE Q L E Sbjct: 29 MEQTPMTARGEMLLRKELERLKLVERPRIVAAIAEARSHGDLSENAEYDAAKEEQGLCEA 88 Query: 62 RMAELENIITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ ++E + A +ID++ + ++ FG TV++++ ++ + Y+IVG+ EAD+Q Sbjct: 89 RIKDIEAKLATANIIDVTKLKPAGGAPLKVVFGCTVTVIDVDTDKEVTYKIVGEDEADIQ 148 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S L+S +PIA+ L+GK GD +N P G+ TYEI ++ + Sbjct: 149 SNLISYKTPIAKGLLGKIEGDEAQINIPRGQVTYEIAEIKY 189 >gi|254374096|ref|ZP_04989578.1| transcriptional elongation factor [Francisella novicida GA99-3548] gi|151571816|gb|EDN37470.1| transcriptional elongation factor [Francisella novicida GA99-3548] Length = 160 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ARALI KE GD I+++ P G TYEI+ V + Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGRVTYEIVAVEY 159 >gi|74316538|ref|YP_314278.1| transcription elongation factor GreB [Thiobacillus denitrificans ATCC 25259] gi|74056033|gb|AAZ96473.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] Length = 187 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ E + ERP++++ IS A + GD SEN +Y K+ + R+ Sbjct: 30 KNYMTPAGYARLDAEFNQLWKVERPKLVETISWAASNGDRSENGDYIYGKKRLREVDRRI 89 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D +T + D++ FGATV++ + + G + Y IVG EAD G ++ Sbjct: 90 RFLSKRLEHAEVVDPATRAATDQVFFGATVTVADAD-GSESTYAIVGLDEADASRGRIAW 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ GD + V P G + EI++V ++ Sbjct: 149 MSPMARALLKAREGDTVVVQTPDGRREVEIIEVRYV 184 >gi|330721348|gb|EGG99423.1| Transcription elongation factor GreA [gamma proteobacterium IMCC2047] Length = 158 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ +G ++++EL + ERPRII+AI+EARA+GDL ENAEY AA+E Q EG Sbjct: 1 MNKFPMSKQGELQLREELERLKTIERPRIIEAIAEARAHGDLKENAEYHAAREEQGFTEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ A+VID++ +S ++ FG TV L ++ + +YQIVG+ EAD++ + Sbjct: 61 RIQEIEGKLSNAQVIDVTAISNTGKVIFGVTVELENIDTEEVVSYQIVGEDEADMKQRKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI+SPIAR LIGK GD++ VN PGG YEI+ V + Sbjct: 121 SITSPIARGLIGKVEGDVVGVNVPGGLVEYEIISVEHV 158 >gi|85373967|ref|YP_458029.1| transcription elongation factor GreA [Erythrobacter litoralis HTCC2594] gi|84787050|gb|ABC63232.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ + ERP+++ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MEKVPMLAEGYERLTADLKALRA-ERPKVVDAIEEARAHGDLSENAEYHAAKERQGQIEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A++E+ +TRA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD G +S Sbjct: 60 QIADIEDRVTRAQIIDPATLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAAKGRIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSPI RALIGK++GD I V P G+K Y + +V ++ Sbjct: 119 YSSPIGRALIGKQVGDEIEVTVPSGDKFYLVDKVEFV 155 >gi|328675796|gb|AEB28471.1| Transcription elongation factor GreA [Francisella cf. novicida 3523] Length = 160 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR Sbjct: 4 DRVPMTPAGEQALRAELEKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63 Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETIYKIVGEDEADIDNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++P+ARALI KE GD +S++ P G+ TYEI+ V + Sbjct: 124 VAAPLARALIKKEEGDEVSLDTPKGKVTYEIVAVEY 159 >gi|87311291|ref|ZP_01093413.1| transcription elongation factor greA [Blastopirellula marina DSM 3645] gi|87286031|gb|EAQ77943.1| transcription elongation factor greA [Blastopirellula marina DSM 3645] Length = 163 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 100/157 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+ P++ KGFDK++ +L + E PRI + I+ AR GDL ENAEY A+E Q + + Sbjct: 4 MADRNPMSRKGFDKLKADLDHLESVEMPRITEKIATAREEGDLKENAEYHGARETQGMIQ 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ +++ ++RA +ID +++ + F AT+++ + + ++ Y +VG+ E D + + Sbjct: 64 AKIHAIKSKLSRAYIIDPASIDQSVVGFFATITVEDLDMDEEDTYTLVGNGEEDFMNNKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+A++L+G ++GD++ + AP G +IL++ + Sbjct: 124 LIDSPMAQSLLGHKVGDVVPIEAPKGTYELKILKIEY 160 >gi|297180938|gb|ADI17141.1| transcription elongation factor [uncultured gamma proteobacterium HF0070_08D07] Length = 157 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 114/155 (73%), Gaps = 1/155 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 IP+T G + ++ EL R+ E R I+K I+EARA+GDL ENAEY AA+E Q+LNEGR+ Sbjct: 3 IPMTVHGAESLRAELAERKGEIRQSIVKDIAEARAHGDLKENAEYHAAREQQSLNEGRIQ 62 Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++E+ + A++ID++ + ++ FGATV++ ++ S D+ YQIVG+ EAD++ G +S+ Sbjct: 63 DIESKLADAQIIDVTKIPATGKVVFGATVTIADEESDDETTYQIVGEDEADLKFGKISVL 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI+RALIGK+ GD+ SVN+P G K YEI++V + Sbjct: 123 SPISRALIGKDTGDVASVNSPSGVKDYEIIKVEHL 157 >gi|77360173|ref|YP_339748.1| transcription elongation factor greA [Pseudoalteromonas haloplanktis TAC125] gi|76875084|emb|CAI86305.1| transcription elongation factor greA [Pseudoalteromonas haloplanktis TAC125] Length = 158 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G D +++EL + RP+I+ I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MQTIPMTVRGADLLRKELTELKTVTRPKIVSDIAVAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EA ++ + Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDVEVKYQIVGDDEASIKDNRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK+ D +++ P G YEI++V +I Sbjct: 121 SVNSPIARGLIGKQADDAVNIETPKGTVEYEIIEVEYI 158 >gi|94265017|ref|ZP_01288786.1| Prokaryotic transcription elongation factor GreA [delta proteobacterium MLMS-1] gi|93454506|gb|EAT04791.1| Prokaryotic transcription elongation factor GreA [delta proteobacterium MLMS-1] Length = 187 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 115/156 (73%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV++IP+T +G ++++QEL Q+++RP +I+AI AR +GDL ENAEY AAKE Q+ E Sbjct: 29 MVERIPMTRQGHERLRQELNRLQRQDRPTVIEAIEVAREHGDLKENAEYHAAKERQSHIE 88 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ ++RAEVID+ + +R+ FG V LV+ ++ + +YQ++G +EADV+ G + Sbjct: 89 GRIMELKDKLSRAEVIDVEDLDCERVVFGVVVKLVDLDTEAEVSYQMLGPEEADVEQGSI 148 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SP+ RA+IGK +GD I+V PGG + +E++ + Sbjct: 149 SVLSPLGRAMIGKSVGDEITVKTPGGVRQFEVMDIS 184 >gi|254449181|ref|ZP_05062631.1| transcription elongation factor GreB [gamma proteobacterium HTCC5015] gi|198261227|gb|EDY85522.1| transcription elongation factor GreB [gamma proteobacterium HTCC5015] Length = 158 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M + +T +GFD++++EL + +EERPR+ +A+SEA A GD SENAEY K+ Sbjct: 1 MSRRSHYITREGFDRLEKELNFLWKEERPRVTQAVSEAAALGDRSENAEYIYGKKRLREI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L + +V+ S ++ FGA V L + +SG+ Y+IVG E D + G Sbjct: 61 DRRVRFLSKRLDELQVVYPSPQQAGKVFFGAWVELEDGDSGEVVKYRIVGPDEFDPEVGA 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S+ SP+ARAL+GK L + V P G + + +L V + Sbjct: 121 ISVDSPVARALLGKALNQTVRVETPKGSRHFIVLDVSY 158 >gi|88799656|ref|ZP_01115231.1| transcription elongation factor GreA [Reinekea sp. MED297] gi|88777550|gb|EAR08750.1| transcription elongation factor GreA [Reinekea sp. MED297] Length = 158 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +Q EL+ + +RP +I AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTVEGELALQAELKELKSVKRPEVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++E ++ ++VI++ + ++ FG TV+L+ + Y+IVGD EA+V+ + Sbjct: 61 RIADIEGKLSASQVINVHDIPNTGKVIFGTTVTLLNTETDQGVTYKIVGDDEANVKVNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIARALIGKE GD+++V PGG YEI V Sbjct: 121 SVNSPIARALIGKEEGDVVNVKTPGGTVEYEIELVEH 157 >gi|27904835|ref|NP_777961.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611722|sp|P59489|GREA_BUCBP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27904233|gb|AAO27066.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 159 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+IP+T G +K+++EL + +RP+IIK+I EAR +GDL EN+EY AA+E Q E Sbjct: 1 MNDQIPMTILGVEKLRKELEMLKTIKRPKIIKSIIEARQHGDLKENSEYHAAREEQGFCE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRI-AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E +++A +IDI+ + + + FG+TV+++ S + Y+IVGD E++ + L Sbjct: 61 GRIKEIELKLSKARIIDITKVKNNGVIIFGSTVTILNLTSNQEFTYRIVGDDESNFKRKL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI+SP++R L+GK++ D+ ++ P G+ Y+IL++ + Sbjct: 121 ISINSPMSRGLVGKKVSDVATIKTPVGDVKYKILKIEY 158 >gi|157164259|ref|YP_001466449.1| transcription elongation factor GreA [Campylobacter concisus 13826] gi|112801597|gb|EAT98941.1| transcription elongation factor GreA [Campylobacter concisus 13826] Length = 161 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G++KI+ EL+ + +RP+I+ I AR++GDL ENAEY AAKE Q + Sbjct: 1 MSE--PMTMHGYEKIEAELKDLRLVQRPQIVTEIDIARSHGDLKENAEYHAAKEKQAFID 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL ++ AEVID S+ DR+ FG++V+++++ + + Y IVG E+D+ G + Sbjct: 59 ARIAELSALLANAEVIDPSSYEHDRVRFGSSVTIMDEETEVEHTYTIVGVSESDLDKGYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+A+ L+GK GD +++N P G EI+++ + Sbjct: 119 SINSPLAKQLLGKAEGDEVALNLPKGRSDVEIVKICY 155 >gi|238783101|ref|ZP_04627127.1| Transcription elongation factor greB [Yersinia bercovieri ATCC 43970] gi|238715897|gb|EEQ07883.1| Transcription elongation factor greB [Yersinia bercovieri ATCC 43970] Length = 165 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +V+D ++ FGA V + + +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-EAEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|152980351|ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] gi|151280428|gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp. Marseille] Length = 157 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+ Sbjct: 4 PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E + ++VID +T+ R+ F ATV L + SG+K YQIVG EAD++ VSI+S Sbjct: 64 IEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITS 123 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 PIARA+IGK GD++ V AP G + YEILQV +I Sbjct: 124 PIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157 >gi|254508242|ref|ZP_05120366.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Vibrio parahaemolyticus 16] gi|219548859|gb|EED25860.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Vibrio parahaemolyticus 16] Length = 157 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEKQLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDVDTDEEKRYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGG++ +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAISTPGGDRDFEIDRVEYI 157 >gi|114778233|ref|ZP_01453105.1| transcription elongation factor GreA [Mariprofundus ferrooxydans PV-1] gi|114551480|gb|EAU54035.1| transcription elongation factor GreA [Mariprofundus ferrooxydans PV-1] Length = 157 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 118/157 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T KG ++++Q L + + E+R +I+ I ARA+GDLSENAEY AAKE Q +NEG Sbjct: 1 MERVPMTKKGAEELKQLLAYLKGEKRHQIVSTIESARAHGDLSENAEYHAAKEEQGMNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++E+ + RA VID +T+ +++ FGATV L++ N G + YQIVG EAD++ G+VS Sbjct: 61 RITDIEDKLARAHVIDPATIKAEKVVFGATVELIDVNQGTEVTYQIVGVDEADIEKGMVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIARA+IGKE GD+ V APGGE+ +EI + ++ Sbjct: 121 ITSPIARAMIGKEEGDLAVVQAPGGEREFEIQAIEYV 157 >gi|91228943|ref|ZP_01262840.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01] gi|262393373|ref|YP_003285227.1| transcription elongation factor GreA [Vibrio sp. Ex25] gi|269968316|ref|ZP_06182338.1| transcription elongation factor GreA [Vibrio alginolyticus 40B] gi|91187503|gb|EAS73838.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01] gi|262336967|gb|ACY50762.1| transcription elongation factor GreA [Vibrio sp. Ex25] gi|269827067|gb|EEZ81379.1| transcription elongation factor GreA [Vibrio alginolyticus 40B] Length = 157 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G K++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQKLRAELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDIDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157 >gi|319956761|ref|YP_004168024.1| transcription elongation factor grea [Nitratifractor salsuginis DSM 16511] gi|319419165|gb|ADV46275.1| transcription elongation factor GreA [Nitratifractor salsuginis DSM 16511] Length = 161 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+ + K+ QEL + EER +I K I EARA GDL ENAEY AAKE Q L E Sbjct: 1 MQKEPMFESTYQKLSQELEQLKNEERAKIAKVIDEARALGDLKENAEYHAAKEKQGLMEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL++++ RA+VID S ++ R++FG+TV LV++++ ++ Y IVG QE+D GL+S Sbjct: 61 RIIELQDLLARAQVIDPSKLAHQRVSFGSTVVLVDQDTDEEVRYVIVGTQESDPSRGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+GKE G+ + + P G K ++I ++ + Sbjct: 121 IQSPMARALLGKEEGEEVELQLPSGRKHFDIEEIKY 156 >gi|238854479|ref|ZP_04644818.1| transcription elongation factor [Lactobacillus jensenii 269-3] gi|260665473|ref|ZP_05866320.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|282934549|ref|ZP_06339801.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|238832906|gb|EEQ25204.1| transcription elongation factor [Lactobacillus jensenii 269-3] gi|260560741|gb|EEX26718.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|281301387|gb|EFA93679.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ Sbjct: 1 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G Sbjct: 61 EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK GD +S+N PGG I V Sbjct: 121 ISNDSPIAQALLGKHKGDTVSINTPGGSFDVVINDVK 157 >gi|295399312|ref|ZP_06809294.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius C56-YS93] gi|312110127|ref|YP_003988443.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1] gi|294978778|gb|EFG54374.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius C56-YS93] gi|311215228|gb|ADP73832.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 99/154 (64%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEAR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S Sbjct: 65 IQTLENMIRNAIIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA++L+G+ +G+ ++V PGGE +I+ V Sbjct: 125 DSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 158 >gi|326387386|ref|ZP_08208995.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208042|gb|EGD58850.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ +G++K+ EL+ + EERP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKLPMLQEGYEKLTAELKALR-EERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ I+RA++ID +T+SGDRI FGATV+L++ ++ YQIVG EADV+ G +S Sbjct: 63 SIGDLEDKISRAQIIDPTTLSGDRIVFGATVTLLD-DADKPVRYQIVGLAEADVKRGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++ D + V P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRKVDDEVEVTVPSGDKFYVVEKIEFI 158 >gi|103486475|ref|YP_616036.1| transcription elongation factor GreA [Sphingopyxis alaskensis RB2256] gi|123253395|sp|Q1GUG9|GREA_SPHAL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|98976552|gb|ABF52703.1| transcription elongation factor GreA [Sphingopyxis alaskensis RB2256] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 112/157 (71%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ ++G++K+ +L + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKVPMLAEGYEKLTAQLAALKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ ++RA+VID +T+SGDRI FGATV+L +++ K YQIVG EAD ++G +S Sbjct: 63 TIGDLEDKLSRAQVIDPTTLSGDRIVFGATVTLTDEDDKPVK-YQIVGQAEADAKAGKIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+ + D I V P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRRVDDEIEVTVPSGDKYYLVTKIEFI 158 >gi|315638220|ref|ZP_07893402.1| transcription elongation factor GreA [Campylobacter upsaliensis JV21] gi|315481756|gb|EFU72378.1| transcription elongation factor GreA [Campylobacter upsaliensis JV21] Length = 161 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MEKEAMSSFGFEKLNAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL I++RA+VID ++ D + FG++V +++ S + Y +VG E+D++ G +S Sbjct: 61 RIAELGGILSRAQVIDPASYPHDSVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARA++GK+ GD V P GE +EI+ + + Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEIISIAY 156 >gi|312144281|ref|YP_003995727.1| transcription elongation factor GreA [Halanaerobium sp. 'sapolanicus'] gi|311904932|gb|ADQ15373.1| transcription elongation factor GreA [Halanaerobium sp. 'sapolanicus'] Length = 160 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +GFDK++ EL + Q E+R + K I AR +GD+SEN+EY AK Q E Sbjct: 1 MAEQLMLTEEGFDKLENELDYLQNEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E++N++ A V+ ++ ++ G TV L ++ K +Y +VG EAD + + Sbjct: 61 GRIKEIKNMLNNAHVVKDEDVTDTKVNLGTTVMLYNLDNDTKISYTLVGSAEADPLNHKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +A++G +GD ++V P GE YEIL + Sbjct: 121 SNESPIGKAILGHVIGDQVTVETPSGEAHYEILSIK 156 >gi|148284685|ref|YP_001248775.1| transcription elongation factor [Orientia tsutsugamushi str. Boryong] gi|229485768|sp|A5CE64|GREA_ORITB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146740124|emb|CAM80312.1| transcription elongation factor [Orientia tsutsugamushi str. Boryong] Length = 159 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 113/157 (71%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ Sbjct: 1 MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LEN + AEVI+I+ ++ + + FGA V L++ ++ + YQIVG+ EAD+ L+S Sbjct: 61 KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDLDTEKEVVYQIVGEYEADITQNLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIA+ALIGK+ GDII V P G + YE+L+V ++ Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157 >gi|313902255|ref|ZP_07835661.1| transcription elongation factor GreA [Thermaerobacter subterraneus DSM 13965] gi|313467485|gb|EFR62993.1| transcription elongation factor GreA [Thermaerobacter subterraneus DSM 13965] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + + Sbjct: 61 GRIIELEKMLRNARIVNDDEIDPTKVNIGSTVYLKDVDTGEEVQYTIVGSNEADPAALRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL G +GD++ V P G YEI+++ Sbjct: 121 SYQSPVGKALFGHSVGDVVEVKVPAGTLRYEIVRIE 156 >gi|71082811|ref|YP_265530.1| transcription elongation factor [Candidatus Pelagibacter ubique HTCC1062] gi|91762766|ref|ZP_01264731.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1002] gi|123775546|sp|Q4FPG2|GREA_PELUB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71061924|gb|AAZ20927.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1062] gi|91718568|gb|EAS85218.1| Transcription elongation factor [Candidatus Pelagibacter ubique HTCC1002] Length = 158 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T+ G + +++EL + ++++RP+I+ AISEAR++GDL ENAEY AAKE Q+ NEG Sbjct: 1 MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+ +II RA VID++ MS D ++ FG+TV L ++G+K Y+IVG EAD+Q L+ Sbjct: 61 RITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPI R LIGK D++ + P G K +EI V ++ Sbjct: 121 FFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV 158 >gi|34557197|ref|NP_907012.1| transcription elongation factor GreA [Wolinella succinogenes DSM 1740] gi|81833097|sp|Q7M9N2|GREA_WOLSU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|34482913|emb|CAE09912.1| TRANSCRIPTION ELONGATION FACTOR GREA TRANSCRIPT CLEAVAGE FACTORGREA [Wolinella succinogenes] Length = 162 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T G++K+Q+EL+ ++ ERP+I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MQKEPMTIYGYEKLQRELKELKEVERPQIVKEIDIARGHGDLKENAEYHAAKERQLFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL I++R +V+D +T++ ++I+FG+T +++ ++ Y IVG E++ G +S Sbjct: 61 RINELSEILSRTQVVDPATITHEKISFGSTFKVMDLDTEFVYEYTIVGAPESNPDRGFIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR LIGK GD I+ P GE YE+L+V + Sbjct: 121 FYSPLARQLIGKVPGDEINAKLPNGEIDYEVLEVYY 156 >gi|153835620|ref|ZP_01988287.1| transcription elongation factor GreA [Vibrio harveyi HY01] gi|148867771|gb|EDL67020.1| transcription elongation factor GreA [Vibrio harveyi HY01] Length = 157 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 110/158 (69%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E + +VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKPSVVQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|238751148|ref|ZP_04612643.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380] gi|238710626|gb|EEQ02849.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380] Length = 169 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 5 MSKSNYITREGWQALDTELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 64 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + SG+++ +++VG E D + Sbjct: 65 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-ESGEQRIFRLVGPDEFDPAKKWI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE Y IL++ + Sbjct: 124 SIDSPVARALIGKQVDDEVTVQTPNGEAIYCILEIRY 160 >gi|319760241|ref|YP_004124179.1| transcription elongation factor GreA [Candidatus Blochmannia vafer str. BVAF] gi|318038955|gb|ADV33505.1| transcription elongation factor GreA [Candidatus Blochmannia vafer str. BVAF] Length = 160 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G ++++++L + + RP I K+ISEAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKKFPMTLRGVEQLREKLDYLKNVLRPIITKSISEARRHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++D++ +S ++ FG TV + + KK Y+IVGD E++++ ++ Sbjct: 61 RIREIEYKLSNVYIVDVTKVISDKKVVFGVTVCIENVITQCKKIYRIVGDDESNLKKNMI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SISSPIA+ LIG + GDI+ ++ P G+ Y I+++ ++ Sbjct: 121 SISSPIAQGLIGHKEGDIVLISTPNGKIEYRIVKIEYL 158 >gi|313623703|gb|EFR93852.1| transcription elongation factor GreA [Listeria innocua FSL J1-023] Length = 175 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 91/152 (59%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +EN A++ID + + G TV+ +E G+++ Y IVG EAD G +S S Sbjct: 82 TIENXXXNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ L+G + G+ +++ P G+ + +I ++ Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173 >gi|125623471|ref|YP_001031954.1| transcription elongation factor greA [Lactococcus lactis subsp. cremoris MG1363] gi|166200668|sp|A2RIW3|GREA_LACLM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|124492279|emb|CAL97210.1| transcription elongation factor greA [Lactococcus lactis subsp. cremoris MG1363] gi|300070217|gb|ADJ59617.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris NZ9000] Length = 156 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 104/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD +G + Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI+ V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVDVPLPVGEMTVKIVKV 155 >gi|238765202|ref|ZP_04626133.1| Transcription elongation factor greB [Yersinia kristensenii ATCC 33638] gi|238696585|gb|EEP89371.1| Transcription elongation factor greB [Yersinia kristensenii ATCC 33638] Length = 165 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPIVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +V+D ++ FGA V + S +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVYFGAWVRVEN-ESEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|218885487|ref|YP_002434808.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226737010|sp|B8DJL8|GREA_DESVM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|218756441|gb|ACL07340.1| transcription elongation factor GreA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 160 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++++G+D++ +EL + ERP II+AI EAR GDL ENA Y AA+E Q + E Sbjct: 1 MSSIPISTEGYDRLMKELERLKS-ERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ +E+ + + VI++ ++SGD++ FGATV + + +SG+ K Y ++G EAD G +S Sbjct: 60 RISYIESRMAQFNVINLDSLSGDKVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARAL+GKE GD I V+AP G +YEI+ V + Sbjct: 120 VLSPVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155 >gi|261250302|ref|ZP_05942878.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891] gi|260939418|gb|EEX95404.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891] Length = 157 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQQLRVELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EA++++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEANIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + ++ PGG++ +EI +V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDRVEYL 157 >gi|283778813|ref|YP_003369568.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068] gi|283437266|gb|ADB15708.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068] Length = 164 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 102/157 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D IP+T +G+ K++ EL + + P I + I++ARA GDL ENAEY A +E Q L + Sbjct: 1 MDDYIPMTREGYAKLKAELDRMENVDMPDITQKIADARAEGDLKENAEYHAQREAQGLLQ 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ + N +++A +ID STM D+++FG TV + + + +++ + +VG E D +G + Sbjct: 61 AKINLIRNKLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ +AL+GK++GD++ V AP G EIL + + Sbjct: 121 LITSPLGQALVGKKIGDVVDVPAPKGSYQLEILTLKF 157 >gi|169794963|ref|YP_001712756.1| transcription elongation factor GreA [Acinetobacter baumannii AYE] gi|184159251|ref|YP_001847590.1| transcription elongation factor GreA [Acinetobacter baumannii ACICU] gi|213157626|ref|YP_002320424.1| transcription elongation factor GreA [Acinetobacter baumannii AB0057] gi|215482514|ref|YP_002324702.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Acinetobacter baumannii AB307-0294] gi|260556445|ref|ZP_05828663.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|301346071|ref|ZP_07226812.1| transcription elongation factor GreA [Acinetobacter baumannii AB056] gi|301511499|ref|ZP_07236736.1| transcription elongation factor GreA [Acinetobacter baumannii AB058] gi|301595422|ref|ZP_07240430.1| transcription elongation factor GreA [Acinetobacter baumannii AB059] gi|332855122|ref|ZP_08435705.1| transcription elongation factor GreA [Acinetobacter baumannii 6013150] gi|332868230|ref|ZP_08438072.1| transcription elongation factor GreA [Acinetobacter baumannii 6013113] gi|332876148|ref|ZP_08443930.1| transcription elongation factor GreA [Acinetobacter baumannii 6014059] gi|169147890|emb|CAM85753.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter baumannii AYE] gi|183210845|gb|ACC58243.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|213056786|gb|ACJ41688.1| transcription elongation factor GreA [Acinetobacter baumannii AB0057] gi|213989115|gb|ACJ59414.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Acinetobacter baumannii AB307-0294] gi|260409704|gb|EEX03004.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|322509165|gb|ADX04619.1| greA [Acinetobacter baumannii 1656-2] gi|323519193|gb|ADX93574.1| transcription elongation factor GreA [Acinetobacter baumannii TCDC-AB0715] gi|332727625|gb|EGJ59044.1| transcription elongation factor GreA [Acinetobacter baumannii 6013150] gi|332733491|gb|EGJ64661.1| transcription elongation factor GreA [Acinetobacter baumannii 6013113] gi|332735646|gb|EGJ66691.1| transcription elongation factor GreA [Acinetobacter baumannii 6014059] Length = 158 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIAR L+GK GD + + P G Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146 >gi|302037858|ref|YP_003798180.1| transcription elongation factor GreA [Candidatus Nitrospira defluvii] gi|300605922|emb|CBK42255.1| Transcription elongation factor GreA [Candidatus Nitrospira defluvii] Length = 158 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T KG++ ++ EL + ERPR+I+AI+EARA+GDLSENAEY AAKE Q E R+AE Sbjct: 4 PITRKGYEALKAELDRLHKVERPRVIEAIAEARAHGDLSENAEYDAAKERQGFIEARLAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + +IDI+ + + + FGATV L+E+ + KK Y +VG EAD++ +S+ SP Sbjct: 64 LKGKLADCRIIDIAGRTSETVVFGATVVLIEQEAQAKKQYTLVGQDEADLKFSRISVQSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RALIGK +GD++ V P YE++++ + Sbjct: 124 VGRALIGKRVGDMVEVTTPAKIVEYEVMEIRF 155 >gi|256850855|ref|ZP_05556244.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260661066|ref|ZP_05861980.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|282934474|ref|ZP_06339729.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|297205729|ref|ZP_06923124.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] gi|256615917|gb|EEU21105.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260548003|gb|EEX23979.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|281301421|gb|EFA93710.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1] gi|297148855|gb|EFH29153.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] Length = 158 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ Sbjct: 1 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G Sbjct: 61 EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK GD +S++ PGG I V Sbjct: 121 ISNDSPIAQALLGKHKGDTVSISTPGGSFDVVINDVK 157 >gi|260549215|ref|ZP_05823435.1| transcription elongation factor greA [Acinetobacter sp. RUH2624] gi|260407621|gb|EEX01094.1| transcription elongation factor greA [Acinetobacter sp. RUH2624] Length = 158 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIAR L+GK GD + + P G Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146 >gi|153950771|ref|YP_001402929.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 31758] gi|152962266|gb|ABS49727.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 31758] Length = 171 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + +++ +++VG E D + Sbjct: 61 RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-EQEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|262199269|ref|YP_003270478.1| transcription elongation factor GreB [Haliangium ochraceum DSM 14365] gi|262082616|gb|ACY18585.1| transcription elongation factor GreB [Haliangium ochraceum DSM 14365] Length = 173 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 83/152 (54%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G +++EL ERPR+ + +++A A GD SENAEY K + R+ Sbjct: 14 YITPEGARVLREELEQLWLVERPRVTQEVADAAAQGDRSENAEYIYGKRRLREIDRRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+ R+ FGA V+L + G + Y+IVG E DV +G +S+ +P Sbjct: 74 LGKRLDSLTVVSEPPSDPKRVFFGAWVTLEDDEDGKEVVYRIVGPDEFDVSAGKISMDAP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK GD ++V P GE Y I++V + Sbjct: 134 VGRALLGKREGDEVTVKRPKGEVVYTIVEVRY 165 >gi|229543750|ref|ZP_04432810.1| transcription elongation factor GreA [Bacillus coagulans 36D1] gi|229328170|gb|EEN93845.1| transcription elongation factor GreA [Bacillus coagulans 36D1] Length = 156 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 100/158 (63%), Gaps = 4/158 (2%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVYPMTQDGKEKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ +EN+I A++I+ D ++ G +V+ VE G+++ Y IVG EAD G Sbjct: 61 VEGRITTIENMIRNAKIIEDD--GTDTVSLGKSVTFVELPDGEEETYTIVGSAEADPFEG 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK +G+ ++V PGG+ +I+ + Sbjct: 119 KISNDSPIAKSLLGKSVGEEVTVQTPGGDMRVKIISIQ 156 >gi|81428983|ref|YP_395983.1| transcription elongation factor GreA [Lactobacillus sakei subsp. sakei 23K] gi|78610625|emb|CAI55676.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus sakei subsp. sakei 23K] Length = 157 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K P+T++G + + +EL + +RP +I I AR++GDLSEN+EY++AK+ Q+ Sbjct: 1 MAQKKFPMTAEGKENLAKELENLKMVKRPEVIDRIKIARSFGDLSENSEYESAKDEQSSL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+EN++ AEVID+ ++ D IA G TVS + G+++ YQIVG E+D +G Sbjct: 61 ETRIVEVENMLRFAEVIDVDNIAVDEIAVGKTVSFTDDEDGEEETYQIVGAAESDPFNGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK +GD + V PGG+ I +V Sbjct: 121 ISNDSPIAQALVGKHVGDKVVVQTPGGDMHVTITEVK 157 >gi|16079786|ref|NP_390610.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. 168] gi|221310668|ref|ZP_03592515.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. 168] gi|221314991|ref|ZP_03596796.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319912|ref|ZP_03601206.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324193|ref|ZP_03605487.1| transcription elongation factor GreA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312257|ref|YP_004204544.1| transcription elongation factor GreA [Bacillus subtilis BSn5] gi|3183527|sp|P80240|GREA_BACSU RecName: Full=Transcription elongation factor greA; AltName: Full=General stress protein 20M; Short=GSP20M; AltName: Full=Transcript cleavage factor greA gi|2635178|emb|CAB14674.1| transcription elongation factor [Bacillus subtilis subsp. subtilis str. 168] gi|291485137|dbj|BAI86212.1| transcription elongation factor GreA [Bacillus subtilis subsp. natto BEST195] gi|320018531|gb|ADV93517.1| transcription elongation factor GreA [Bacillus subtilis BSn5] Length = 157 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 103/158 (65%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T++G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK++ + ++V PGGE +I+++ Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKIS 157 >gi|189184202|ref|YP_001937987.1| GreA protein [Orientia tsutsugamushi str. Ikeda] gi|238692019|sp|B3CTQ6|GREA_ORITI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189180973|dbj|BAG40753.1| GreA protein [Orientia tsutsugamushi str. Ikeda] Length = 159 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 114/157 (72%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ Sbjct: 1 MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LEN + AEVI+I+ ++ + + FGA V L+++++ + YQIVG+ EAD+ L+S Sbjct: 61 KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDRDTEKEVVYQIVGEYEADITQNLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIA+ALIGK+ GDII V P G + YE+L+V ++ Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157 >gi|218233280|ref|YP_002369189.1| transcription elongation factor GreA [Bacillus cereus B4264] gi|228923131|ref|ZP_04086422.1| Transcription elongation factor greA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941547|ref|ZP_04104096.1| Transcription elongation factor greA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960651|ref|ZP_04122296.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974477|ref|ZP_04135044.1| Transcription elongation factor greA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229071888|ref|ZP_04205099.1| Transcription elongation factor greA [Bacillus cereus F65185] gi|229129660|ref|ZP_04258628.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4] gi|229152583|ref|ZP_04280772.1| Transcription elongation factor greA [Bacillus cereus m1550] gi|229180655|ref|ZP_04307995.1| Transcription elongation factor greA [Bacillus cereus 172560W] gi|229192591|ref|ZP_04319552.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876] gi|218161237|gb|ACK61229.1| transcription elongation factor GreA [Bacillus cereus B4264] gi|228590898|gb|EEK48756.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876] gi|228602800|gb|EEK60281.1| Transcription elongation factor greA [Bacillus cereus 172560W] gi|228630844|gb|EEK87484.1| Transcription elongation factor greA [Bacillus cereus m1550] gi|228653777|gb|EEL09647.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4] gi|228711184|gb|EEL63148.1| Transcription elongation factor greA [Bacillus cereus F65185] gi|228785194|gb|EEM33206.1| Transcription elongation factor greA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799015|gb|EEM45987.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818103|gb|EEM64179.1| Transcription elongation factor greA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836510|gb|EEM81860.1| Transcription elongation factor greA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 175 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175 >gi|296284018|ref|ZP_06862016.1| transcription elongation factor GreA [Citromicrobium bathyomarinum JL354] Length = 155 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 119/157 (75%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ + ERP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MEKVPMLAEGYERLTTDLKALRA-ERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AE+E+ +TRA++ID ST+SGD++ FGATV+L++++ K YQIVG EAD +S +S Sbjct: 60 QIAEIEDRVTRAQIIDPSTLSGDKVVFGATVTLLDEDDKPIK-YQIVGQTEADAKSARIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ARALIGK++G+ + V P G+K Y + ++ +I Sbjct: 119 YNSPLARALIGKKVGEEVEVTVPSGDKFYLVDKIEFI 155 >gi|33519573|ref|NP_878405.1| transcription elongation factor GreA [Candidatus Blochmannia floridanus] gi|33517236|emb|CAD83619.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Candidatus Blochmannia floridanus] Length = 162 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++IP+T G +K++++L + + RP IIK ISEAR +GDL EN+EY AA+E Q EGR Sbjct: 6 ERIPMTQNGVEKLRKKLEYLKNVLRPEIIKNISEARKHGDLKENSEYHAAREQQGFCEGR 65 Query: 63 MAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + E+E ++ A +ID++ ++ ++ + FG TV + + ++ K+ Y+IVGD EA+ + ++S Sbjct: 66 IQEIEFKLSNAYIIDVTKVAEEQKVVFGVTVCVEKLDTQSKQVYRIVGDDEANYKKNMIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I+SPIAR LIG +GDI+++N P G TY+I+Q+ ++ Sbjct: 126 INSPIARGLIGNTIGDIVTINTPQGNITYKIIQIQYV 162 >gi|20808737|ref|NP_623908.1| transcription elongation factor GreA [Thermoanaerobacter tengcongensis MB4] gi|25452988|sp|Q8R7N0|GREA_THETN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|20517379|gb|AAM25512.1| Transcription elongation factor [Thermoanaerobacter tengcongensis MB4] Length = 157 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+A LE ++ A+VID + D ++ G TV + ++ ++ Y IVG EAD + + Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDEVSIGCTVKVFDETYNEEVEYTIVGSAEADPMNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +AL+GK++G+ ISV P G +IL++ Sbjct: 121 SDESPIGKALLGKKVGETISVEVPAGVIKLKILEIR 156 >gi|323700312|ref|ZP_08112224.1| transcription elongation factor GreA [Desulfovibrio sp. ND132] gi|323460244|gb|EGB16109.1| transcription elongation factor GreA [Desulfovibrio desulfuricans ND132] Length = 164 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP++ +GF+KI QEL + +RP II+AI+EARA GDLSENA Y AA+E Q + E Sbjct: 1 MDRIPISKQGFEKISQELEDLKA-QRPAIIQAIAEARAEGDLSENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R++ + + + +V+D+ +SG+R FGATV + + ++ +++ + ++G +AD + G +S Sbjct: 60 RISYINSHMPLFDVLDLDALSGERAIFGATVEVEDIDTEERRTFTLLGPDDADHKKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ +A++GKE GD + V+AP G YEI+ V ++ Sbjct: 120 VLSPMGQAILGKEEGDEVIVDAPRGRIEYEIVSVQFL 156 >gi|116511431|ref|YP_808647.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris SK11] gi|123025545|sp|Q030Z7|GREA_LACLS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116107085|gb|ABJ72225.1| transcription elongation factor GreA [Lactococcus lactis subsp. cremoris SK11] Length = 156 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 70/155 (45%), Positives = 105/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE+++ + ++ D +A G V+ VE D+++YQIVG EAD +G + Sbjct: 61 GRISTVETMIRYAEIVNNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI++V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155 >gi|47093417|ref|ZP_00231182.1| transcription elongation factor GreA [Listeria monocytogenes str. 4b H7858] gi|300764839|ref|ZP_07074829.1| transcription elongation factor GreA [Listeria monocytogenes FSL N1-017] gi|47018196|gb|EAL08964.1| transcription elongation factor GreA [Listeria monocytogenes str. 4b H7858] gi|300514515|gb|EFK41572.1| transcription elongation factor GreA [Listeria monocytogenes FSL N1-017] Length = 152 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 92/150 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ + Sbjct: 1 MTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S SPI Sbjct: 61 ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+ L+G + G+ +++ P G+ + +I ++ Sbjct: 121 AKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 150 >gi|268592314|ref|ZP_06126535.1| transcription elongation factor GreB [Providencia rettgeri DSM 1131] gi|291312097|gb|EFE52550.1| transcription elongation factor GreB [Providencia rettgeri DSM 1131] Length = 161 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MTKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + +I+ R+ FGA V L ++N + ++IVG E + + Sbjct: 61 RRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENEN-IRIFRIVGADEFNPTKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I+VN PGG+ TY +L++ + Sbjct: 120 SIDSPVARALIGKQVDDEITVNTPGGQVTYFVLEISY 156 >gi|153207473|ref|ZP_01946173.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat Q177'] gi|161831566|ref|YP_001597133.1| transcription elongation factor GreA [Coxiella burnetii RSA 331] gi|165918942|ref|ZP_02219028.1| transcription elongation factor GreA [Coxiella burnetii RSA 334] gi|120576604|gb|EAX33228.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat Q177'] gi|161763433|gb|ABX79075.1| transcription elongation factor GreA [Coxiella burnetii RSA 331] gi|165917339|gb|EDR35943.1| transcription elongation factor GreA [Coxiella burnetii RSA 334] Length = 159 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q E Sbjct: 1 MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 GR+ E+E + ++IDIS + ++ FGATV+L+ + + YQI+G EA+++ Sbjct: 61 GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SISSP ARA+IGK + D+I V P G YEI+ V ++ Sbjct: 121 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 159 >gi|254522230|ref|ZP_05134285.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14] gi|219719821|gb|EED38346.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14] Length = 152 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 72/149 (48%), Positives = 110/149 (73%), Gaps = 1/149 (0%) Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 G K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +LE + Sbjct: 3 GAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQLEGEL 62 Query: 71 TRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + AE+ID+S ++ G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISSP+ARA Sbjct: 63 SHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKLGLIAISSPVARA 122 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158 +IGK GD I ++AP G++ YEI+ V ++ Sbjct: 123 MIGKLEGDSIVIDAPAGQREYEIVSVSYV 151 >gi|87200244|ref|YP_497501.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|123722531|sp|Q2G656|GREA_NOVAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|87135925|gb|ABD26667.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 158 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ ++G++K+ EL+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKLPMLAEGYEKLTAELKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID +T+SGD+I FGATV+L++ + YQIVG EAD + G++S Sbjct: 63 TIADLEDRVSRAQIIDPTTLSGDKIIFGATVTLLD-DDEKPVKYQIVGPYEADAKKGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ +ALIG+++ + I V P G+K Y + ++ +I Sbjct: 122 YNSPLGKALIGRKVDEEIEVTVPSGDKFYLVQKIEFI 158 >gi|254458168|ref|ZP_05071594.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] gi|207085004|gb|EDZ62290.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] Length = 165 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +DK+ P+T G++K+Q E+R ++ +RP I+KAI EA +GDL ENAEY AAKE Q + Sbjct: 1 MDKVEPMTLFGYEKLQAEVRDLKEVKRPEIVKAIEEALEHGDLKENAEYHAAKEAQRNID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+L +I+ + ++D S + +I+FG+TV + + +S + Y IVG E++ GL+ Sbjct: 61 NRLADLASILGCSRIVDPSELEHAKISFGSTVVMTDMDSDETVTYTIVGGCESNPDMGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+G+E GD + V PGG K YEI +V + Sbjct: 121 SFASPLAKQLLGREEGDEVKVVLPGGAKEYEIEEVKY 157 >gi|126642719|ref|YP_001085703.1| transcription elongation factor GreA [Acinetobacter baumannii ATCC 17978] gi|239503380|ref|ZP_04662690.1| transcription elongation factor GreA [Acinetobacter baumannii AB900] gi|126388603|gb|ABO13101.1| transcription elongation factor [Acinetobacter baumannii ATCC 17978] Length = 158 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIAR L+GK GD + + P G Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146 >gi|238788974|ref|ZP_04632764.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC 33641] gi|238723001|gb|EEQ14651.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC 33641] Length = 165 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDHELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + + +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-EAAEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL + + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156 >gi|218899548|ref|YP_002447959.1| transcription elongation factor GreA [Bacillus cereus G9842] gi|228967454|ref|ZP_04128483.1| Transcription elongation factor greA [Bacillus thuringiensis serovar sotto str. T04001] gi|229048087|ref|ZP_04193660.1| Transcription elongation factor greA [Bacillus cereus AH676] gi|229146950|ref|ZP_04275314.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24] gi|218545656|gb|ACK98050.1| transcription elongation factor GreA [Bacillus cereus G9842] gi|228636549|gb|EEK93015.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24] gi|228723242|gb|EEL74614.1| Transcription elongation factor greA [Bacillus cereus AH676] gi|228792231|gb|EEM39804.1| Transcription elongation factor greA [Bacillus thuringiensis serovar sotto str. T04001] Length = 175 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175 >gi|167625072|ref|YP_001675366.1| transcription elongation factor GreA [Shewanella halifaxensis HAW-EB4] gi|167355094|gb|ABZ77707.1| transcription elongation factor GreA [Shewanella halifaxensis HAW-EB4] Length = 153 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+ ++ Sbjct: 1 MTVVGAERLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++TM + R+ FG+TV+++ ++ + Y+IVG+ EA+++ L+S+SSP Sbjct: 61 EGKLSHAQIIDVTTMDNNGRVIFGSTVTILNLDTEGEVTYRIVGEDEANIRENLLSVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK L D IS+ PGG +EI++V +I Sbjct: 121 IARGLIGKNLDDEISIVTPGGTTDFEIIKVDYI 153 >gi|22127785|ref|NP_671208.1| transcription elongation factor GreB [Yersinia pestis KIM 10] gi|45439998|ref|NP_991537.1| transcription elongation factor GreB [Yersinia pestis biovar Microtus str. 91001] gi|51598055|ref|YP_072246.1| transcription elongation factor GreB [Yersinia pseudotuberculosis IP 32953] gi|108809325|ref|YP_653241.1| transcription elongation factor GreB [Yersinia pestis Antiqua] gi|108814090|ref|YP_649857.1| transcription elongation factor GreB [Yersinia pestis Nepal516] gi|145597385|ref|YP_001161460.1| transcription elongation factor GreB [Yersinia pestis Pestoides F] gi|150260817|ref|ZP_01917545.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|165928050|ref|ZP_02223882.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. F1991016] gi|165936194|ref|ZP_02224763.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. IP275] gi|166010458|ref|ZP_02231356.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. E1979001] gi|166213294|ref|ZP_02239329.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399683|ref|ZP_02305207.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418839|ref|ZP_02310592.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425709|ref|ZP_02317462.1| transcription elongation factor GreB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468694|ref|ZP_02333398.1| transcription elongation factor GreB [Yersinia pestis FV-1] gi|170022432|ref|YP_001718937.1| transcription elongation factor GreB [Yersinia pseudotuberculosis YPIII] gi|186897255|ref|YP_001874367.1| transcription elongation factor GreB [Yersinia pseudotuberculosis PB1/+] gi|218927346|ref|YP_002345221.1| transcription elongation factor GreB [Yersinia pestis CO92] gi|229836384|ref|ZP_04456551.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|229839991|ref|ZP_04460150.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842072|ref|ZP_04462227.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229904627|ref|ZP_04519738.1| transcription elongation factor [Yersinia pestis Nepal516] gi|270488160|ref|ZP_06205234.1| transcription elongation factor GreB [Yersinia pestis KIM D27] gi|294502225|ref|YP_003566287.1| transcription elongation factor GreB [Yersinia pestis Z176003] gi|25452997|sp|Q8ZJH2|GREB_YERPE RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21960914|gb|AAM87459.1|AE013996_4 transcription elongation factor [Yersinia pestis KIM 10] gi|45434853|gb|AAS60414.1| transcription elongation factor [Yersinia pestis biovar Microtus str. 91001] gi|51591337|emb|CAH23003.1| transcription elongation factor [Yersinia pseudotuberculosis IP 32953] gi|108777738|gb|ABG20257.1| transcription elongation factor GreB [Yersinia pestis Nepal516] gi|108781238|gb|ABG15296.1| transcription elongation factor GreB [Yersinia pestis Antiqua] gi|115345957|emb|CAL18821.1| transcription elongation factor [Yersinia pestis CO92] gi|145209081|gb|ABP38488.1| transcription elongation factor GreB [Yersinia pestis Pestoides F] gi|149290225|gb|EDM40302.1| transcription elongation factor [Yersinia pestis CA88-4125] gi|165915808|gb|EDR34416.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. IP275] gi|165919999|gb|EDR37300.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990548|gb|EDR42849.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205592|gb|EDR50072.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962833|gb|EDR58854.1| transcription elongation factor GreB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052187|gb|EDR63595.1| transcription elongation factor GreB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055399|gb|EDR65193.1| transcription elongation factor GreB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748966|gb|ACA66484.1| transcription elongation factor GreB [Yersinia pseudotuberculosis YPIII] gi|186700281|gb|ACC90910.1| transcription elongation factor GreB [Yersinia pseudotuberculosis PB1/+] gi|229678745|gb|EEO74850.1| transcription elongation factor [Yersinia pestis Nepal516] gi|229690382|gb|EEO82436.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. India 195] gi|229696357|gb|EEO86404.1| transcription elongation factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706452|gb|EEO92459.1| transcription elongation factor [Yersinia pestis Pestoides A] gi|262360304|gb|ACY57025.1| transcription elongation factor GreB [Yersinia pestis D106004] gi|262364255|gb|ACY60812.1| transcription elongation factor GreB [Yersinia pestis D182038] gi|270336664|gb|EFA47441.1| transcription elongation factor GreB [Yersinia pestis KIM D27] gi|294352684|gb|ADE63025.1| transcription elongation factor GreB [Yersinia pestis Z176003] gi|320013271|gb|ADV96842.1| transcription elongation factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 171 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + +++ +++VG E D + Sbjct: 61 RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-EQEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|237807290|ref|YP_002891730.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187] gi|237499551|gb|ACQ92144.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187] Length = 161 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G+ K++ EL++ + +RP + +A+SEA A GD SENAEY+ K + Sbjct: 1 MKTNLITRAGWQKLEDELKYLWKVKRPEVTQAVSEAAALGDRSENAEYKEGKRELRSIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + ++++ S ++ FGA V L + GD +Y+IVG E D ++ ++ Sbjct: 61 RLRFLTKRLDALKIVEYSPQQEGKVYFGAWVELEN-DQGDIVHYRIVGTDEIDTKNNYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + VN P GEK + I ++ + Sbjct: 120 IDSPMARALIGKQVDDEVRVNTPSGEKEWFINKIQY 155 >gi|87121705|ref|ZP_01077592.1| transcription elongation factor greA (transcript cleavage factor) [Marinomonas sp. MED121] gi|86162956|gb|EAQ64234.1| transcription elongation factor greA (transcript cleavage factor) [Marinomonas sp. MED121] Length = 158 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G ++++EL + ERPRII I+ AR +GDL ENAEY AA+E Q EG Sbjct: 1 MRKVPMTVEGEARLREELGHLKSVERPRIINDIAIAREHGDLKENAEYHAAREEQGFAEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++ ++VID+ + ++ FG+T++L ++ + Y+IVGD EA+V+ + Sbjct: 61 RIKEIEGKLSDSQVIDVKAIAHTGKVIFGSTITLFNVDTEETVTYRIVGDDEAEVKDKKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +SPIA+ALIGK GD +++ P GE YEI V + Sbjct: 121 SYASPIAKALIGKNEGDEVAIKIPSGEVVYEIESVEHL 158 >gi|313681690|ref|YP_004059428.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM 16994] gi|313154550|gb|ADR33228.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM 16994] Length = 165 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 98/157 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T GF ++ EL + + P + I A+ YGDL EN+EY AA+E Q Sbjct: 1 MEQKEPMTKYGFQRLSDELNTLKNIDLPAVNVEIDRAKEYGDLKENSEYHAAREKQAFIG 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I+RA+++D S + R++FG+TV L + S ++ Y IVG E++ GL+ Sbjct: 61 SRIAELGEVISRAQIVDPSELEHARVSFGSTVVLCDLESDEEVTYTIVGGCESNPDRGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+G++ GD ++ PGG K +E+L+V + Sbjct: 121 SFNSPLAKQLLGRQEGDELNAKLPGGTKNFEVLEVKY 157 >gi|300725195|ref|YP_003714523.1| transcription elongation factor and transcript cleavage [Xenorhabdus nematophila ATCC 19061] gi|297631740|emb|CBJ92459.1| transcription elongation factor and transcript cleavage [Xenorhabdus nematophila ATCC 19061] Length = 165 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ + ERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MTKSHYITREGWHTLDQELKYLWKIERPNVTQAVSEAAALGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + G++ +++VG E D + Sbjct: 61 RRVRFLSKRLDILQIVDPDPRQEGKVFFGAWVKVEN-EQGEEHIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK++ D ++V P G TY I Q+ + Sbjct: 120 SIDSPVARALLGKQVDDEVTVMTPNGMATYWIRQIGY 156 >gi|70734327|ref|YP_257967.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5] gi|68348626|gb|AAY96232.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGARALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD+++V PGG YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVAVKTPGGVIEYEIVEVRHI 158 >gi|156936432|ref|YP_001440348.1| transcription elongation factor GreB [Cronobacter sakazakii ATCC BAA-894] gi|260599707|ref|YP_003212278.1| transcription elongation factor GreB [Cronobacter turicensis z3032] gi|156534686|gb|ABU79512.1| hypothetical protein ESA_04333 [Cronobacter sakazakii ATCC BAA-894] gi|260218884|emb|CBA34239.1| Transcription elongation factor greB [Cronobacter turicensis z3032] Length = 157 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEVEN-DDGDVKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE GD+ +V PGGE T+ + + ++ Sbjct: 125 ARALLKKEEGDVATVQTPGGEATWYVNAIEYV 156 >gi|223038587|ref|ZP_03608880.1| transcription elongation factor GreA [Campylobacter rectus RM3267] gi|222879989|gb|EEF15077.1| transcription elongation factor GreA [Campylobacter rectus RM3267] Length = 162 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I++RA+VID S D++ FG+TV +++ + +K Y +VG E++++ GL+ Sbjct: 59 SRIAELSDIVSRAKVIDPSEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+A+ LIGK GD +++N P G EI+ V + Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155 >gi|154175152|ref|YP_001408890.1| transcription elongation factor GreA [Campylobacter curvus 525.92] gi|112803753|gb|EAU01097.1| biopolymer transport ExbB protein [Campylobacter curvus 525.92] Length = 162 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 104/152 (68%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G++KI+ EL+ +Q +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE Sbjct: 4 PMTIYGYEKIEAELKDLRQVQRPQIVIEIDIARSHGDLKENAEYHAAKEKQAFIDTRIAE 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ AEVID S+ DR+ FG++V++++ + + Y IVG E+++ GL+SI+SP Sbjct: 64 LSTLLANAEVIDPSSYEHDRVRFGSSVTIMDVETEIEHTYTIVGISESNLDRGLISINSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR L+GK GD +++N P G E+++V + Sbjct: 124 LARQLLGKAEGDEVALNLPNGRSDVEVVEVCY 155 >gi|229081644|ref|ZP_04214139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2] gi|228701648|gb|EEL54139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2] Length = 175 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161 >gi|242280745|ref|YP_002992874.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM 2638] gi|259647639|sp|C6BRV2|GREA_DESAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|242123639|gb|ACS81335.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM 2638] Length = 160 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 108/156 (69%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP++ +GF KI+ EL ++ ERP +IKAI+EAR GDL EN Y AA+E Q + E Sbjct: 1 MSTIPISKEGFAKIKAELASLKK-ERPEVIKAIAEAREEGDLKENGGYHAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +E+ I + V+D++T+ G++I FGATV+L + ++G +K Y I+G E+D + G++S Sbjct: 60 KINYIESRIPQFNVVDMTTLGGEKITFGATVTLEDIDTGAEKTYTIMGPDESDFKKGIIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ +AL+GK GD + VNAP G+ Y I+ V++ Sbjct: 120 IESPVGKALLGKIEGDEVVVNAPKGKIEYGIVSVIF 155 >gi|238797302|ref|ZP_04640803.1| Transcription elongation factor greB [Yersinia mollaretii ATCC 43969] gi|238718939|gb|EEQ10754.1| Transcription elongation factor greB [Yersinia mollaretii ATCC 43969] Length = 169 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTLAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +V+D ++ FGA V + + +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-EAEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156 >gi|170727907|ref|YP_001761933.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908] gi|169813254|gb|ACA87838.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908] Length = 153 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D++++EL + + E+RP+I +AI EAR GDL ENAEY AA+E Q L E R+ +L Sbjct: 1 MTIVGADQLRKELDYLKFEKRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDL 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++ M RI FG TV+++ ++ + Y+IVGD EA+++ L+S+SSP Sbjct: 61 EGKLSNAQIIDVTKMQNTGRIIFGTTVTILNIDTDVETTYRIVGDDEANIKENLLSVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK + D ++++ PGG YEI V +I Sbjct: 121 IARGLIGKNVDDEVTISTPGGMTEYEITAVEYI 153 >gi|82523822|emb|CAI78564.1| transcription elongation factor GreA [uncultured candidate division OP8 bacterium] Length = 156 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 109/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G K++ EL+ ++ +RP +KAI EAR +GDL ENA+++ AK+ Q + G Sbjct: 1 MERYPITPEGLKKLEAELKRLREVDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A L+ I+ A VID S +SG+R+ FGA V L ++G+ Y++VG+ EAD++ G +S Sbjct: 61 RIAYLQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+AR LI +E+G+ + P G K++EI+++ + Sbjct: 121 ITSPLARGLIRREVGEQAKIAVPSGIKSFEIVKIEF 156 >gi|193213188|ref|YP_001999141.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB 8327] gi|238692652|sp|B3QPT8|GREA_CHLP8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193086665|gb|ACF11941.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB 8327] Length = 159 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLSTQTRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 ++ +LEN + A ++D + DR+ +V L + D+ Y +V +EAD G Sbjct: 61 AKIGDLENKLASATILDPKQIKTDRVYILTSVKLRNLDDEDEIIEYTLVSSEEADSDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK +GD ++++ P GE YEIL + Sbjct: 121 ISVRSPVGRALIGKSVGDKVTISVPKGELHYEILDI 156 >gi|332291987|ref|YP_004430596.1| transcription elongation factor GreA [Krokinobacter diaphorus 4H-3-7-5] gi|332170073|gb|AEE19328.1| transcription elongation factor GreA [Krokinobacter diaphorus 4H-3-7-5] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVNYYTPEGLKKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LEN+ + A +ID S + ++ +TV + + +G Y++V EAD++ GL+ Sbjct: 61 MRIAKLENLASNARIIDESQLDTSKVLVHSTVKIKNQINGATMTYKLVAQNEADIKKGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GKE+G++ + P G ++++ + Sbjct: 121 SVDSPIGKGLLGKEVGEVAEIQVPSGVMKFDVVSIS 156 >gi|207723992|ref|YP_002254390.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum MolK2] gi|207742902|ref|YP_002259294.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum IPO1609] gi|206589200|emb|CAQ36162.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum MolK2] gi|206594297|emb|CAQ61224.1| transcription elongation factor grea (transcript cleavage factorgrea) protein [Ralstonia solanacearum IPO1609] Length = 146 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ E+E+ + A+ Sbjct: 2 LKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQ 61 Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SISSPIARALIGK Sbjct: 62 VIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISISSPIARALIGK 121 Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158 GD+ +V APGGE+ YE+ V ++ Sbjct: 122 YEGDVATVVAPGGEREYEVRSVKYL 146 >gi|28899240|ref|NP_798845.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD 2210633] gi|260362164|ref|ZP_05775154.1| transcription elongation factor GreA [Vibrio parahaemolyticus K5030] gi|260879066|ref|ZP_05891421.1| transcription elongation factor GreA [Vibrio parahaemolyticus AN-5034] gi|260900671|ref|ZP_05909066.1| transcription elongation factor GreA [Vibrio parahaemolyticus AQ4037] gi|31076674|sp|Q87LZ2|GREA_VIBPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28807464|dbj|BAC60729.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD 2210633] gi|308089586|gb|EFO39281.1| transcription elongation factor GreA [Vibrio parahaemolyticus AN-5034] gi|308110885|gb|EFO48425.1| transcription elongation factor GreA [Vibrio parahaemolyticus AQ4037] gi|308111060|gb|EFO48600.1| transcription elongation factor GreA [Vibrio parahaemolyticus K5030] Length = 157 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157 >gi|330447154|ref|ZP_08310804.1| transcription elongation factor GreB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491345|dbj|GAA05301.1| transcription elongation factor GreB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +G++K++QEL +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTNLVTREGYNKLKQELDSLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +VID S ++ FGA V + + GD+K ++IVG E ++ +S Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIEN-DDGDQKTFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+ D I V P G+K + I + + Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINDIRY 155 >gi|302390918|ref|YP_003826738.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM 5501] gi|302202995|gb|ADL11673.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM 5501] Length = 157 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+ +T +G +K+++EL + + +R + K I +A +GD+SEN+EY AK Q E Sbjct: 1 MAEKVILTKEGLNKLEEELSYLKGTKRREVAKRIKQALEFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+EN++ AEVI+ + + G TV++ + ++ ++ NY+IVG EAD + Sbjct: 61 GRIKEIENMLNNAEVINEDEVETTEVNIGTTVTIRDLDTEEEYNYKIVGTTEADPFENKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ AL+G ++G+ + ++AP G+ Y+IL + Sbjct: 121 SNDSPVGNALLGHKIGEEVEIDAPAGKIVYKILAIQ 156 >gi|312963093|ref|ZP_07777578.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6] gi|311282604|gb|EFQ61200.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +GF +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MTKYPMTVQGFKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + + VID++T+ ++ FG TV + + + Y IVG+ EAD + G + Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+ARALI KE GD+++V PGG YEI++V + Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158 >gi|118475144|ref|YP_891529.1| transcription elongation factor GreA [Campylobacter fetus subsp. fetus 82-40] gi|118414370|gb|ABK82790.1| transcription elongation factor GreA [Campylobacter fetus subsp. fetus 82-40] Length = 161 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 107/157 (68%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+ Sbjct: 59 NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI++P+A+ LIGK GD ++++ P G EI+ V + Sbjct: 119 SINTPLAKQLIGKSEGDNVTLSLPNGISEIEIVSVCY 155 >gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC 39073] gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC 39073] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T+ G K+++EL + + +R + + + +A +GD+SEN+EY+ AK Q Sbjct: 1 MAEKETLLTANGLKKLEEELEYLKTVKRQEVAERLKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A+VI S + D ++ G+ V+L + + G++ Y+IVG EAD Sbjct: 61 EGRILTLEKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDEGEEIQYEIVGSMEADPAENR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+G G+ +++ P G Y+IL + Sbjct: 121 ISNESPVGKALLGHHTGETVTIQVPAGNLRYQILNI 156 >gi|229163328|ref|ZP_04291280.1| Transcription elongation factor greA [Bacillus cereus R309803] gi|228620109|gb|EEK76983.1| Transcription elongation factor greA [Bacillus cereus R309803] Length = 186 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161 >gi|77456995|ref|YP_346500.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf0-1] gi|77380998|gb|ABA72511.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Pseudomonas fluorescens Pf0-1] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MNKYPMTVQGSKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRLQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD + V PGG+ YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDTVVVKTPGGDIEYEIVEVRHI 158 >gi|255321856|ref|ZP_05363006.1| transcription elongation factor GreA [Campylobacter showae RM3277] gi|255300960|gb|EET80227.1| transcription elongation factor GreA [Campylobacter showae RM3277] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +II+RA+VID + D++ FG+TV +++ + +K Y +VG E++++ GL+ Sbjct: 59 SRIAELSDIISRAKVIDPAEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+A+ LIGK GD +++N P G EI+ V + Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155 >gi|188025404|ref|ZP_02958495.2| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827] gi|188023657|gb|EDU61697.1| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 4 MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + +++ R+ FGA V L + ++ + + +++VG E + + Sbjct: 64 RRVRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNENIRIFRLVGADEFNPSKNWI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK++ D I+VN PGG TY +L++ + Sbjct: 123 SIDSPVARALVGKQVDDEITVNTPGGRVTYTVLEISY 159 >gi|317154377|ref|YP_004122425.1| transcription elongation factor GreA [Desulfovibrio aespoeensis Aspo-2] gi|316944628|gb|ADU63679.1| transcription elongation factor GreA [Desulfovibrio aespoeensis Aspo-2] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+IP++ +GF+KI++EL + +RP II+AI EAR GDLSENA Y AA+E Q + E Sbjct: 1 MDRIPISKQGFEKIKKELEELKA-QRPAIIQAIKEAREEGDLSENAGYDAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ + + + +V+D+ T+ G R FGATV + + ++ + K + ++G +AD +SG +S Sbjct: 60 RITYINSRMPLFDVLDLDTLGGSRAIFGATVEIEDMDTEETKRFTLLGPDDADHKSGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SP+ RAL+GKE+GD V+AP G YEI+ + ++ Sbjct: 120 VLSPMGRALMGKEVGDEAIVDAPRGRIEYEIVSIQFL 156 >gi|319952614|ref|YP_004163881.1| transcription elongation factor grea [Cellulophaga algicola DSM 14237] gi|319421274|gb|ADV48383.1| transcription elongation factor GreA [Cellulophaga algicola DSM 14237] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K T +G K++ EL + ERP+ + I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSNKSYYTPEGLKKLRDELNQLKDIERPKASRDIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE + A +ID S + ++ +TV L +N+G + Y +V + EAD+++G + Sbjct: 61 LRISKLEETYSNARLIDESQLDTSKVLVLSTVKLKNQNNGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK++G+ + P G EIL++ Sbjct: 121 SVNSPIGKGLLGKKVGESAEITIPNGVLKLEILEIT 156 >gi|268678843|ref|YP_003303274.1| transcription elongation factor GreA [Sulfurospirillum deleyianum DSM 6946] gi|268616874|gb|ACZ11239.1| transcription elongation factor GreA [Sulfurospirillum deleyianum DSM 6946] Length = 167 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 97/158 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G+ K+ EL ++ +RP + + AR++GDL ENAEY AAKE + Sbjct: 1 MNTKEPMTEYGYKKLTDELSDLKKRQRPETVIELDIARSHGDLKENAEYHAAKEKLAFID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL ++++R++VID ST D++ FG+T++L + ++ Y IVG E++ GL+ Sbjct: 61 SRIAELSDLVSRSQVIDPSTYEHDKVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+++ L+G+ + + + + P G + Y IL + + Sbjct: 121 SYHSPLSKQLMGRCVDEEVMIKLPVGTQEYAILNITYC 158 >gi|296333176|ref|ZP_06875629.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675318|ref|YP_003866990.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii str. W23] gi|296149374|gb|EFG90270.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413562|gb|ADM38681.1| transcription elongation factor GreA [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 102/158 (64%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK++ + ++V PGGE +I+++ Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKIS 157 >gi|283480153|emb|CAY76069.1| Transcription elongation factor greB [Erwinia pyrifoliae DSM 12163] Length = 187 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 29 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 88 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S Sbjct: 89 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 147 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +V P GE + I + ++ Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 184 >gi|86131276|ref|ZP_01049875.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] gi|85818687|gb|EAQ39847.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] Length = 158 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 94/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVNYYTAEGLQKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE + A +ID S + ++ +TV + + +G Y++V EAD++ GL+ Sbjct: 61 MRISKLEELAANARIIDESQLDTSKVLVHSTVKIKNQTNGATMTYKLVAQNEADIKKGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GKE+GD+ + P G ++++ + Sbjct: 121 SVDSPIGKGLLGKEVGDVAEIQVPSGIMKFDVVSIT 156 >gi|311277660|ref|YP_003939891.1| transcription elongation factor GreB [Enterobacter cloacae SCF1] gi|308746855|gb|ADO46607.1| transcription elongation factor GreB [Enterobacter cloacae SCF1] Length = 157 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD K ++IVG E Q +SI SP+ Sbjct: 66 TKCLEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDIKRFRIVGYDEIFGQKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ +V PGGE T+ + + ++ Sbjct: 125 ARALLKKEVGDLATVQTPGGEATWYVNDIEYV 156 >gi|226309768|ref|YP_002769662.1| transcription elongation factor [Brevibacillus brevis NBRC 100599] gi|226092716|dbj|BAH41158.1| transcription elongation factor [Brevibacillus brevis NBRC 100599] Length = 158 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T +G K++QEL + +R + I EA ++GD+SEN+EY+ AK Q Sbjct: 1 MSEKEVILTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I + ++ G+ V L + GD +Y IVG E+D + Sbjct: 61 EGRILTLEKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+GK G I+ VN P G YEIL + Sbjct: 121 ISNESPVGQALLGKAKGAIVDVNVPAGVIQYEILDI 156 >gi|309389965|gb|ADO77845.1| transcription elongation factor GreA [Halanaerobium praevalens DSM 2228] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 100/156 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T +GF+K++QEL + + E+R + K I AR +GD+SEN+EY AK Q E Sbjct: 1 MADQVMLTEEGFEKLEQELEYLETEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E++N+++ A V+ ++ ++ G TV L + ++ ++ +Y +VG EAD + + Sbjct: 61 GRIQEIKNMLSDAHVVKDDEVTDKKVNLGTTVMLNDLDNDEQISYTLVGSAEADPLNYKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +A++G +GD + V+ PGGE YEI+ + Sbjct: 121 SNESPIGKAILGHAIGDQVKVDTPGGEVNYEIISIK 156 >gi|78187325|ref|YP_375368.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273] gi|78167227|gb|ABB24325.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273] Length = 176 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T G++++++EL+ QE R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 18 MSERVYLTRDGYNRLKEELQVLVQETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQTE 77 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119 R+A+LEN + A ++D + D++ +V L ++ + Y +V +EAD G Sbjct: 78 SRIADLENKLASATILDPKQIKTDKVYILTSVELRNLDAPKEIIEYTLVSSEEADSDLGK 137 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK GD +++ P GE YEIL++ Sbjct: 138 ISVRSPVGRALIGKTAGDKVTIVVPKGELHYEILKI 173 >gi|58699052|ref|ZP_00373893.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila ananassae] gi|225630273|ref|YP_002727064.1| transcription elongation factor GreA [Wolbachia sp. wRi] gi|58534429|gb|EAL58587.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila ananassae] gi|225592254|gb|ACN95273.1| transcription elongation factor GreA [Wolbachia sp. wRi] Length = 164 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ +Q EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVMFGATVTLSMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|238792874|ref|ZP_04636504.1| Transcription elongation factor greB [Yersinia intermedia ATCC 29909] gi|238727728|gb|EEQ19252.1| Transcription elongation factor greB [Yersinia intermedia ATCC 29909] Length = 165 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +V+D ++ FGA V + +++ +++VG E D + Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-ELEEQRIFRLVGPDEFDPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D ++V P GE TY IL++ + Sbjct: 120 SIDSPVARALIGKQVEDEVTVQTPNGEATYWILEIRY 156 >gi|157376534|ref|YP_001475134.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3] gi|157318908|gb|ABV38006.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3] Length = 153 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++EL + + E+RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++ Sbjct: 1 MTVVGAERLRKELDYLKFEKRPVIAQAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ ++ID++ M RI FG TV+++ ++ + Y+IVG+ EAD++ L+S+SSP Sbjct: 61 EGKLSNVQIIDVTKMPNTGRIIFGTTVTILNIDTDVEVTYRIVGEDEADIKENLISVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGK L D +++ PGG YEI V +I Sbjct: 121 IARGLIGKNLDDEVNIATPGGITEYEITAVEYI 153 >gi|94498550|ref|ZP_01305105.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58] gi|94421993|gb|EAT07039.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58] Length = 158 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ ++RA+VID T+SG++I FGATV+L++++ K YQIVG EAD ++G++S Sbjct: 63 TINDLEDKLSRAQVIDPKTLSGNKIIFGATVTLMDEDDKPVK-YQIVGQAEADAKAGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ RALIG+E+GD + V+ P G+K Y + ++ ++ Sbjct: 122 YSSPLGRALIGREVGDEVEVSVPSGDKFYLVDKIEFL 158 >gi|229019601|ref|ZP_04176414.1| Transcription elongation factor greA [Bacillus cereus AH1273] gi|229025839|ref|ZP_04182237.1| Transcription elongation factor greA [Bacillus cereus AH1272] gi|229032029|ref|ZP_04188012.1| Transcription elongation factor greA [Bacillus cereus AH1271] gi|228729274|gb|EEL80268.1| Transcription elongation factor greA [Bacillus cereus AH1271] gi|228735450|gb|EEL86047.1| Transcription elongation factor greA [Bacillus cereus AH1272] gi|228741681|gb|EEL91868.1| Transcription elongation factor greA [Bacillus cereus AH1273] Length = 175 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175 >gi|118479541|ref|YP_896692.1| transcription elongation factor GreA [Bacillus thuringiensis str. Al Hakam] gi|190566829|ref|ZP_03019745.1| transcription elongation factor GreA [Bacillus anthracis Tsiankovskii-I] gi|196034522|ref|ZP_03101931.1| transcription elongation factor GreA [Bacillus cereus W] gi|196039303|ref|ZP_03106609.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99] gi|196044918|ref|ZP_03112152.1| transcription elongation factor GreA [Bacillus cereus 03BB108] gi|218905574|ref|YP_002453408.1| transcription elongation factor GreA [Bacillus cereus AH820] gi|225866361|ref|YP_002751739.1| transcription elongation factor GreA [Bacillus cereus 03BB102] gi|228929424|ref|ZP_04092445.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935700|ref|ZP_04098513.1| Transcription elongation factor greA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228987631|ref|ZP_04147745.1| Transcription elongation factor greA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123920|ref|ZP_04253112.1| Transcription elongation factor greA [Bacillus cereus 95/8201] gi|229157995|ref|ZP_04286066.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342] gi|229186619|ref|ZP_04313780.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1] gi|254684135|ref|ZP_05147995.1| transcription elongation factor GreA [Bacillus anthracis str. CNEVA-9066] gi|254721967|ref|ZP_05183756.1| transcription elongation factor GreA [Bacillus anthracis str. A1055] gi|254736482|ref|ZP_05194188.1| transcription elongation factor GreA [Bacillus anthracis str. Western North America USA6153] gi|254741520|ref|ZP_05199207.1| transcription elongation factor GreA [Bacillus anthracis str. Kruger B] gi|254750958|ref|ZP_05202997.1| transcription elongation factor GreA [Bacillus anthracis str. Vollum] gi|254757713|ref|ZP_05209740.1| transcription elongation factor GreA [Bacillus anthracis str. Australia 94] gi|300119200|ref|ZP_07056897.1| transcription elongation factor GreA [Bacillus cereus SJ1] gi|301055888|ref|YP_003794099.1| transcription elongation factor [Bacillus anthracis CI] gi|118418766|gb|ABK87185.1| transcription elongation factor GreA [Bacillus thuringiensis str. Al Hakam] gi|190561820|gb|EDV15789.1| transcription elongation factor GreA [Bacillus anthracis Tsiankovskii-I] gi|195993064|gb|EDX57023.1| transcription elongation factor GreA [Bacillus cereus W] gi|196024406|gb|EDX63079.1| transcription elongation factor GreA [Bacillus cereus 03BB108] gi|196029930|gb|EDX68531.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99] gi|218538607|gb|ACK91005.1| transcription elongation factor GreA [Bacillus cereus AH820] gi|225789601|gb|ACO29818.1| transcription elongation factor GreA [Bacillus cereus 03BB102] gi|228596878|gb|EEK54537.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1] gi|228625448|gb|EEK82204.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342] gi|228659222|gb|EEL14870.1| Transcription elongation factor greA [Bacillus cereus 95/8201] gi|228772091|gb|EEM20543.1| Transcription elongation factor greA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228823938|gb|EEM69757.1| Transcription elongation factor greA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830212|gb|EEM75828.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|298723420|gb|EFI64165.1| transcription elongation factor GreA [Bacillus cereus SJ1] gi|300378057|gb|ADK06961.1| transcription elongation factor [Bacillus cereus biovar anthracis str. CI] Length = 175 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175 >gi|229141116|ref|ZP_04269658.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26] gi|229198506|ref|ZP_04325210.1| Transcription elongation factor greA [Bacillus cereus m1293] gi|228585009|gb|EEK43123.1| Transcription elongation factor greA [Bacillus cereus m1293] gi|228642394|gb|EEK98683.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26] gi|324328283|gb|ADY23543.1| transcription elongation factor GreA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 175 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175 >gi|152992894|ref|YP_001358615.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1] gi|166201123|sp|A6Q9U9|GREA_SULNB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151424755|dbj|BAF72258.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1] Length = 162 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 76/156 (48%), Positives = 110/156 (70%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+ + + K+ +EL + ER I K I EAR GDL ENAEY AAK+ Q L E Sbjct: 1 MQKEPMLEETYRKLSEELEQLKSVERGVIAKVIDEARELGDLKENAEYHAAKDKQGLMEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ RA+V+D ST S DR++FG+TV LV++++ ++ Y IVG QE++ QSGL+S Sbjct: 61 RIAELTDVVGRAQVVDPSTFSHDRVSFGSTVVLVDQDTDEEVRYTIVGGQESNPQSGLIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+AR LIGKE GD + + P G+KTY+I ++L+ Sbjct: 121 IQSPMARVLIGKEEGDEVELTLPSGKKTYDIEEILY 156 >gi|42520503|ref|NP_966418.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410242|gb|AAS14352.1| transcription elongation factor GreA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 164 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ +Q EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|305666121|ref|YP_003862408.1| transcription elongation factor greA [Maribacter sp. HTCC2170] gi|88707555|gb|EAQ99798.1| transcription elongation factor greA [Maribacter sp. HTCC2170] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 100/156 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T++G ++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSNVSYYTAEGLKNLRDELNQLKDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE+ + A +ID S + ++ +TV L + +G + Y +V + EAD+++G + Sbjct: 61 LRISKLEDTVANARLIDESQLDTSKVLVLSTVKLKNQANGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GKE+GD + P G+ T+EIL++ Sbjct: 121 SVNSPIGKGLLGKEVGDTAEITVPNGKITFEILEIT 156 >gi|322381160|ref|ZP_08055163.1| transcription elongation factor GreA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154736|gb|EFX47007.1| transcription elongation factor GreA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 170 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 13 MSEKEVILTQEGLSKLENELDHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 72 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D ++ G+TV++ + GD Y IVG E+D Sbjct: 73 EGRIITLEKMLRNARIINSDDVDTDTVSVGSTVTMKDLEFGDTVEYTIVGTAESDPFLNK 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+ G I+ VN P G YEI+ + Sbjct: 133 ISNESPVGKAILGKQKGAIVDVNVPAGVIKYEIIDIK 169 >gi|148244934|ref|YP_001219628.1| transcription elongation factor GreA [Candidatus Vesicomyosocius okutanii HA] gi|166201193|sp|A5CVW9|GREA_VESOH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146326761|dbj|BAF61904.1| transcription elongation factor GreA [Candidatus Vesicomyosocius okutanii HA] Length = 159 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IPVT+ G ++ L + RPRII+ I ARA+GDL ENAEY AAKE Q+ EG Sbjct: 1 MNNIPVTAFGAKALEAALLKLKDVSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E ++R ++ID++ +S D R FG T++L+ + YQIVG+ EAD+ + Sbjct: 61 RIKEIELKLSRMQIIDVTKLSQDGRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SPIA AL+G E GD + V AP G+ Y+IL V + Sbjct: 121 SCHSPIASALMGNEEGDKVIVKAPKGDIVYKILSVEY 157 >gi|120437373|ref|YP_863059.1| transcription elongation factor GreA [Gramella forsetii KT0803] gi|166200665|sp|A0M5U7|GREA_GRAFK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|117579523|emb|CAL67992.1| transcription elongation factor GreA [Gramella forsetii KT0803] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 94/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERP+ +AI EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTPEGLKKLRDELNHLKDVERPKASEAIGEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +++++E ++ A VID S + ++ + V + + +G + Y++V EAD++SG + Sbjct: 61 MKISKMEEVVANARVIDESQLDTSKVLVHSHVKIKNQTNGAEMTYKLVAQSEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI + L+GK++GD + P G ++++++ Sbjct: 121 SVDSPIGKGLLGKKVGDTAEIEVPNGTVKFDVIEI 155 >gi|293393396|ref|ZP_06637708.1| transcription elongation factor GreB [Serratia odorifera DSM 4582] gi|291424133|gb|EFE97350.1| transcription elongation factor GreB [Serratia odorifera DSM 4582] Length = 157 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTQLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVEN-DDGDLKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ K++GD VN P GE + + Q+ ++ Sbjct: 120 IDSPMARALLKKQVGDTAMVNTPAGEALWYVNQIEYV 156 >gi|310765656|gb|ADP10606.1| Transcription elongation factor greB [Erwinia sp. Ejp617] Length = 187 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 29 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDS 88 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S Sbjct: 89 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 147 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +V P GE + + + ++ Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYVNDISYV 184 >gi|148553363|ref|YP_001260945.1| transcription elongation factor GreA [Sphingomonas wittichii RW1] gi|229485908|sp|A5V3E1|GREA_SPHWW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148498553|gb|ABQ66807.1| transcription elongation factor GreA [Sphingomonas wittichii RW1] Length = 158 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 109/156 (69%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K+P+ ++G + +EL + ERP II AI EARA+GDLSENAEY AAKE Q E Sbjct: 5 EKLPMLAEGQKMLTEELARLKA-ERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEAS 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E+ ++RA+VID S +SGD+I FGATV+L++ + YQIVG EAD ++G +S Sbjct: 64 IADIEDRLSRAQVIDPSMLSGDKIVFGATVTLLD-DDEKPVRYQIVGQTEADAKTGKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIGK++ D + V P G++ Y + ++ +I Sbjct: 123 NSPLGRALIGKKVDDEVEVTVPSGDRFYLVSKIEFI 158 >gi|313157566|gb|EFR56982.1| transcription elongation factor GreA [Alistipes sp. HGB5] Length = 169 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 98/154 (63%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q + E R Sbjct: 15 EIIYLTAEGYKKLRDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGMLEMR 74 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I Sbjct: 75 IAKLEDSLANARVIDESKIDKSKVQILSKVTLLNHNTKKEMVYTIVAEHEANLREGKLAI 134 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +PIA+AL+G + GD + V P G +EIL + Sbjct: 135 GTPIAKALLGHKKGDRVDVEVPAGTIHFEILDIS 168 >gi|254428856|ref|ZP_05042563.1| transcription elongation factor GreA subfamily [Alcanivorax sp. DG881] gi|196195025|gb|EDX89984.1| transcription elongation factor GreA subfamily [Alcanivorax sp. DG881] Length = 153 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q EGR+ ++ Sbjct: 1 MTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCEGRIGDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++IDI T+ + ++ FG TV++++ ++ + K YQIVGD EA+++ G +S++SP Sbjct: 61 EGKLSNAQIIDIQTIENTGKVIFGVTVTIIDVDTDETKVYQIVGDDEANIKEGKLSVNSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIG+E GD++ ++ PGG + YE+ QV I Sbjct: 121 IARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 153 >gi|157736870|ref|YP_001489553.1| transcription elongation factor GreA [Arcobacter butzleri RM4018] gi|315636041|ref|ZP_07891300.1| transcription elongation factor GreA [Arcobacter butzleri JV22] gi|166987609|sp|A8ESG0|GREA_ARCB4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157698724|gb|ABV66884.1| transcription elongation factor GreA [Arcobacter butzleri RM4018] gi|315479697|gb|EFU70371.1| transcription elongation factor GreA [Arcobacter butzleri JV22] Length = 161 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 109/156 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T G++K+ EL + ++ ERP + A+ EAR GDL ENAEY +AKE L + Sbjct: 1 MEKEPMTLAGYNKVTAELDFLKKTERPETVIALDEARQLGDLKENAEYHSAKEKLKLIDI 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL +I++A +ID +T+ DR++FG+T+ LV+ ++ ++ Y IVG E+ + G++S Sbjct: 61 QIAELNAVISKAVIIDPTTLPHDRVSFGSTIDLVDVDTDEEFTYTIVGGVESSAEKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+A+ L+GKE GD ++ PGG KT+EIL+V + Sbjct: 121 FNSPLAKQLMGKEAGDELNATLPGGAKTFEILKVYY 156 >gi|58584571|ref|YP_198144.1| transcription elongation factor, GreA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418887|gb|AAW70902.1| Transcription elongation factor, GreA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 164 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K P+T +GF+ IQ EL ++E+ P II+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IIKKFPITREGFEHIQAELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117 GR+ ELEN ++ AE+I++ +SGD + FGATV+L + +S + Y+IVG+ EADV Sbjct: 64 GRIMELENKLSHAEIIEVKNLSGDSVMFGATVTLSMLNDDDSEVEYIYKIVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPSGEKLYKIVKIEF 163 >gi|301061737|ref|ZP_07202478.1| transcription elongation factor GreA [delta proteobacterium NaphS2] gi|300444197|gb|EFK08221.1| transcription elongation factor GreA [delta proteobacterium NaphS2] Length = 155 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 107/155 (69%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T G +K++ EL + ++ E+P I+AI+EARA+GDLSENAEY AAKE Q L Sbjct: 1 MEKMPITKDGLEKLKSELVYLEKTEKPNNIQAIAEARAHGDLSENAEYHAAKEKQGLIAA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ EL+N I +AE+ID++ DR+ FG TV L + + + YQ+VG E+D ++G +S Sbjct: 61 KINELQNAIGQAEIIDVNDGPMDRVVFGRTVLLYDIQNDKEITYQLVGPYESDPENGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SP+ R LIG+E+GD + + P G +E+L++ Sbjct: 121 IKSPLGRGLIGREIGDEVKIKTPRGVLEFEVLEIK 155 >gi|212711646|ref|ZP_03319774.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM 30120] gi|212685748|gb|EEB45276.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM 30120] Length = 161 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+D + +EL++ +EERP + +++SEA A GD SENAEY K+ + Sbjct: 1 MNKSLLITREGWDALDKELKYLWKEERPLVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + +++ R+ FGA V L + ++ + + ++IVG E D + Sbjct: 61 RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNENIRIFRIVGADEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D + V PGG+ TY IL++ + Sbjct: 120 SIDSPVARALIGKQVEDEVVVTTPGGKITYFILEISY 156 >gi|167754137|ref|ZP_02426264.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216] gi|167658762|gb|EDS02892.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216] Length = 158 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 99/153 (64%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R Sbjct: 4 EIIYLTAEGYKKLKDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E+ I A +ID S + ++ + V+L+ N+G + Y IV + EA+++ G ++I Sbjct: 64 IAKMEDTIANARIIDESKVDKSKVQILSRVTLLNHNTGKEVIYTIVAEHEANLREGKLAI 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +PIA+AL+G + GD + V P G +EIL + Sbjct: 124 GTPIAKALLGHKKGDRVDVTVPAGTIHFEILDI 156 >gi|54307806|ref|YP_128826.1| transcription elongation factor GreA [Photobacterium profundum SS9] gi|46912229|emb|CAG19024.1| putative transcription elongation factor GreA [Photobacterium profundum SS9] Length = 166 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 10 MEKVPMTVRGEQTLREELEILLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 68 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ ++VID++ M + ++ FG TV L++ N+ D+ Y IVGD EAD++ L+ Sbjct: 69 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDELTYCIVGDDEADIKKNLI 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S++ PGG K +EI QV ++ Sbjct: 129 SVNSPIARGLIGKLEGDEVSIHTPGGVKEFEIEQVQYL 166 >gi|116491243|ref|YP_810787.1| transcription elongation factor GreA [Oenococcus oeni PSU-1] gi|290890788|ref|ZP_06553855.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429] gi|122276575|sp|Q04EK0|GREA_OENOB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116091968|gb|ABJ57122.1| transcription elongation factor GreA [Oenococcus oeni PSU-1] gi|290479560|gb|EFD88217.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429] Length = 162 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q Sbjct: 1 MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ +L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG Sbjct: 61 VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 +S SP+ +AL+ + GD + + P T EIL V Sbjct: 121 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHVS 159 >gi|295694793|ref|YP_003588031.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] gi|295410395|gb|ADG04887.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] Length = 158 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G K+++EL + + +R + + I A +YGD+SEN+EY+ AK Q Sbjct: 1 MSEKEVLLTPGGLQKLEEELEYLKSVKRREVAERIKTAISYGDISENSEYEDAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I S + D ++ G+TVSL + G+ Y IVG E+D Sbjct: 61 EGRIITLEKMLRNARIIKDSDVDTDVVSIGSTVSLKDLEFGEVVEYTIVGSAESDPVENR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RAL+G+ +G++++V P G YEILQ+ Sbjct: 121 ISNESPVGRALLGRRVGEVVNVEVPDGVLQYEILQIK 157 >gi|328554350|gb|AEB24842.1| transcription elongation factor GreA [Bacillus amyloliquefaciens TA208] gi|328912754|gb|AEB64350.1| Transcription elongation factor greA [Bacillus amyloliquefaciens LL3] Length = 157 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTQEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G Sbjct: 61 VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+G+++ + ++V PGGE +I+++ Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKIS 157 >gi|28209977|ref|NP_780921.1| transcription elongation factor GreA [Clostridium tetani E88] gi|28202412|gb|AAO34858.1| transcription elongation factor greA [Clostridium tetani E88] Length = 186 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 89/155 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 30 SKKYVMTYEGVKKLEEELEYLKTVKRKEITQKIKVALSFGDLSENSEYDEAKNEQAFVEG 89 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + M D + G+ V + + D++ + IVG EAD +S Sbjct: 90 RIIQLENMLKNATIVDENEMPADTVNVGSIVKVKDFEFNDEEEFIIVGSAEADPLENKIS 149 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIGK+ G+ + V P G YEI+ V Sbjct: 150 NESPVGKALIGKKAGEKVEVIVPDGISKYEIISVR 184 >gi|261409956|ref|YP_003246197.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|261286419|gb|ACX68390.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] Length = 158 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 93/156 (59%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 1 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + G+K YQ+VG EADV + V Sbjct: 61 TRIIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKV 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK +GD + V AP G YE+L++ Sbjct: 121 SYESPLGKALMGKAVGDQVHVEAPMGIVKYELLEIK 156 >gi|332289717|ref|YP_004420569.1| transcription elongation factor GreB [Gallibacterium anatis UMN179] gi|330432613|gb|AEC17672.1| transcription elongation factor GreB [Gallibacterium anatis UMN179] Length = 161 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + QEL++ + ERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRAGWNTLDQELKYLWKVERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D +I FGA V L E +GD K Y+IVG E D + Sbjct: 61 RRVRFLTKRLEVLQIVDYHPRQEGKIFFGAWVEL-ETENGDLKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D + V+ P G+ + + ++ + Sbjct: 120 SIDSPVARALIGKSIDDEVKVDTPSGKIVFYVNKIWY 156 >gi|86143814|ref|ZP_01062190.1| putative transcription elongation factor [Leeuwenhoekiella blandensis MED217] gi|85829857|gb|EAQ48319.1| putative transcription elongation factor [Leeuwenhoekiella blandensis MED217] Length = 158 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++++E ++ A +ID S + + +TV + + +G + Y++V EAD++SG + Sbjct: 61 MRISKMEELVANARIIDESQLDTSKALVHSTVKIKNQTNGMQMTYKLVAQSEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GK++G++ V P G ++IL++ Sbjct: 121 SVDSPIGKGLLGKKVGEVAEVQVPNGTMKFDILEIT 156 >gi|57242062|ref|ZP_00370002.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis RM3195] gi|57017254|gb|EAL54035.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis RM3195] Length = 161 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E Sbjct: 1 MEKEAMSSFGFEKLSAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL I++RA+VID ++ + + FG++V +++ S + Y +VG E+D++ G +S Sbjct: 61 RIAELGGILSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+ARA++GK+ GD V P GE +EIL V + Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEILSVTY 156 >gi|291534723|emb|CBL07835.1| transcription elongation factor GreA [Roseburia intestinalis M50/1] gi|291540500|emb|CBL13611.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4] Length = 159 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 93/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 1 MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G + Sbjct: 61 ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFDEELEYKIVGSTEANSLKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD ++V P GE +Y++L + Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155 >gi|301050385|ref|ZP_07197272.1| transcription elongation factor GreB [Escherichia coli MS 185-1] gi|300297895|gb|EFJ54280.1| transcription elongation factor GreB [Escherichia coli MS 185-1] Length = 161 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|292489910|ref|YP_003532800.1| transcription elongation factor greB [Erwinia amylovora CFBP1430] gi|292900946|ref|YP_003540315.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291200794|emb|CBJ47928.1| transcription elongation factor [Erwinia amylovora ATCC 49946] gi|291555347|emb|CBA23711.1| Transcription elongation factor greB [Erwinia amylovora CFBP1430] gi|312174094|emb|CBX82347.1| Transcription elongation factor greB [Erwinia amylovora ATCC BAA-2158] Length = 159 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVAWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S Sbjct: 61 RIRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +V P GE + + + ++ Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYVNAISYV 156 >gi|320103860|ref|YP_004179451.1| transcription elongation factor GreA [Isosphaera pallida ATCC 43644] gi|319751142|gb|ADV62902.1| transcription elongation factor GreA [Isosphaera pallida ATCC 43644] Length = 157 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 101/154 (65%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P++ +G+DK++ +L + EE P+I + I+ AR +GDLSENAE+ AA E Q + + Sbjct: 1 MDKVPMSKEGYDKLRAQLDHWKNEEMPKIAEQIALARGFGDLSENAEFDAAVEAQGMLQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE+ ++RA ++D + ++ DR+ FG V +++ + D++ + VG E D + + Sbjct: 61 KINDLESKLSRAIIVDKNAVTTDRVVFGTRVKVLDLDCDDEEEFTFVGPGEEDYDNNKIL 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SSPI + L+GK + D + VN P G + IL++ Sbjct: 121 LSSPIGQGLLGKSVNDEVCVNVPKGVLRFRILEI 154 >gi|86148136|ref|ZP_01066435.1| transcription elongation factor GreA [Vibrio sp. MED222] gi|218710454|ref|YP_002418075.1| transcription elongation factor GreA [Vibrio splendidus LGP32] gi|85834053|gb|EAQ52212.1| transcription elongation factor GreA [Vibrio sp. MED222] gi|218323473|emb|CAV19650.1| transcription elongation factor GreA [Vibrio splendidus LGP32] Length = 157 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL + RP I AI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGAQQLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G + Sbjct: 60 QIRDIEYKLSLAQIIDVTQMDNTGKIIFGTTVTLIDVDTDEEFRYQIVSEDEADIKTGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I Sbjct: 120 SVKSPIARGLIGKMEGDEVLISTPGGDKDFEIDKVEYI 157 >gi|290473268|ref|YP_003466134.1| transcription elongation factor and transcript cleavage [Xenorhabdus bovienii SS-2004] gi|289172567|emb|CBJ79336.1| transcription elongation factor and transcript cleavage [Xenorhabdus bovienii SS-2004] Length = 160 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ + ERP + +A+S+A A GD SENAEY K+ + Sbjct: 1 MAKSNYITREGWHALDQELKYLWKVERPNVTQAVSDAAALGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V + + + ++ +++VG E + + Sbjct: 61 RRVRFLSKRLDALQIVDPDPRQEGKVFFGAWVKVENEKA-EEHIFRLVGPDEFEPAKKWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK++ D I+V P G Y IL++ + Sbjct: 120 SIDSPVARALLGKQVDDEITVMTPNGMAIYWILEIGY 156 >gi|119478511|ref|ZP_01618473.1| Transcription elongation factor GreA [marine gamma proteobacterium HTCC2143] gi|119448492|gb|EAW29740.1| Transcription elongation factor GreA [marine gamma proteobacterium HTCC2143] Length = 153 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL + E+RPRI++ I++AR +GDL ENAEY AA+E Q EGR+ E+ Sbjct: 1 MTVAGEAAMRAELHRLKSEDRPRIVQDIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ + VID++T+ S ++ FG TV++V + ++ Y+IVG+ EA+V +G++S++SP Sbjct: 61 EGKLSDSIVIDVTTIPSTGKVIFGTTVAIVNCETDEEVTYKIVGEDEANVSAGMISVTSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGKE+GD+ V P G+ YEI +V + Sbjct: 121 IARALIGKEVGDVAVVKTPKGDVEYEIDEVSHL 153 >gi|168701830|ref|ZP_02734107.1| transcription elongation factor greA [Gemmata obscuriglobus UQM 2246] Length = 161 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 95/154 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D+IP+T +G+DK++ EL + E I K ++ AR GDLSENAEY AA+E Q + + R Sbjct: 4 DRIPMTREGYDKLKVELDRLRGAEMIEITKRVAAARDLGDLSENAEYHAAREDQGILQAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + ++RA ++D S + D +AFG+ V +++ + +++ +++V + + G + Sbjct: 64 IDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILT 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI + LIG++ GD + + P G ++IL++ Sbjct: 124 GSPIGQGLIGRKKGDTVEIQVPSGTIKFKILEIS 157 >gi|118586750|ref|ZP_01544187.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163] gi|118432838|gb|EAV39567.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163] Length = 169 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q Sbjct: 8 MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 67 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ +L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG Sbjct: 68 VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 127 Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 +S SP+ +AL+ + GD + + P T EIL V Sbjct: 128 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHVS 166 >gi|237728725|ref|ZP_04559206.1| transcription elongation factor GreB [Citrobacter sp. 30_2] gi|283835801|ref|ZP_06355542.1| hypothetical protein CIT292_10195 [Citrobacter youngae ATCC 29220] gi|226909347|gb|EEH95265.1| transcription elongation factor GreB [Citrobacter sp. 30_2] gi|291067966|gb|EFE06075.1| transcription elongation factor GreB [Citrobacter youngae ATCC 29220] Length = 157 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD + ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDIRKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN PGGE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAVVNTPGGEASWYVNEIEYV 156 >gi|89110604|ref|AP_004384.1| transcription elongation factor [Escherichia coli str. K-12 substr. W3110] gi|90111587|ref|YP_026216.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|157162883|ref|YP_001460201.1| transcription elongation factor GreB [Escherichia coli HS] gi|170018358|ref|YP_001723312.1| transcription elongation factor GreB [Escherichia coli ATCC 8739] gi|170082923|ref|YP_001732243.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|188492838|ref|ZP_03000108.1| transcription elongation factor GreB [Escherichia coli 53638] gi|193068770|ref|ZP_03049730.1| transcription elongation factor GreB [Escherichia coli E110019] gi|194431145|ref|ZP_03063438.1| transcription elongation factor GreB [Shigella dysenteriae 1012] gi|194435634|ref|ZP_03067737.1| transcription elongation factor GreB [Escherichia coli 101-1] gi|209920862|ref|YP_002294946.1| transcription elongation factor GreB [Escherichia coli SE11] gi|218555955|ref|YP_002388868.1| transcription elongation factor GreB [Escherichia coli IAI1] gi|238902497|ref|YP_002928293.1| transcription elongation factor [Escherichia coli BW2952] gi|253771765|ref|YP_003034596.1| transcription elongation factor GreB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256020750|ref|ZP_05434615.1| transcription elongation factor GreB [Shigella sp. D9] gi|256025866|ref|ZP_05439731.1| transcription elongation factor GreB [Escherichia sp. 4_1_40B] gi|301023124|ref|ZP_07186930.1| transcription elongation factor GreB [Escherichia coli MS 196-1] gi|312972330|ref|ZP_07786504.1| transcription elongation factor GreB [Escherichia coli 1827-70] gi|544419|sp|P30128|GREB_ECOLI RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|1763682|gb|AAB39763.1| GreB [Escherichia coli] gi|85676635|dbj|BAE77885.1| transcription elongation factor [Escherichia coli str. K12 substr. W3110] gi|87082261|gb|AAC76431.2| transcript cleavage factor [Escherichia coli str. K-12 substr. MG1655] gi|157068563|gb|ABV07818.1| transcription elongation factor GreB [Escherichia coli HS] gi|169753286|gb|ACA75985.1| transcription elongation factor GreB [Escherichia coli ATCC 8739] gi|169890758|gb|ACB04465.1| transcription elongation factor [Escherichia coli str. K-12 substr. DH10B] gi|188488037|gb|EDU63140.1| transcription elongation factor GreB [Escherichia coli 53638] gi|192957846|gb|EDV88289.1| transcription elongation factor GreB [Escherichia coli E110019] gi|194420600|gb|EDX36676.1| transcription elongation factor GreB [Shigella dysenteriae 1012] gi|194425177|gb|EDX41161.1| transcription elongation factor GreB [Escherichia coli 101-1] gi|209914121|dbj|BAG79195.1| transcription elongation factor GreB [Escherichia coli SE11] gi|218362723|emb|CAR00349.1| transcription elongation factor [Escherichia coli IAI1] gi|238863678|gb|ACR65676.1| transcription elongation factor [Escherichia coli BW2952] gi|253322809|gb|ACT27411.1| transcription elongation factor GreB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447575|gb|ACX37997.1| transcription elongation factor GreB [Escherichia coli DH1] gi|299880978|gb|EFI89189.1| transcription elongation factor GreB [Escherichia coli MS 196-1] gi|309703817|emb|CBJ03158.1| transcription elongation factor [Escherichia coli ETEC H10407] gi|310334707|gb|EFQ00912.1| transcription elongation factor GreB [Escherichia coli 1827-70] gi|315137982|dbj|BAJ45141.1| transcription elongation factor greB [Escherichia coli DH1] gi|315614674|gb|EFU95314.1| transcription elongation factor GreB [Escherichia coli 3431] gi|320181896|gb|EFW56802.1| Transcription elongation factor GreB [Shigella boydii ATCC 9905] gi|320199576|gb|EFW74166.1| Transcription elongation factor GreB [Escherichia coli EC4100B] gi|323934604|gb|EGB31004.1| transcription elongation protein GreB [Escherichia coli E1520] gi|323939374|gb|EGB35585.1| transcription elongation proteinGreB [Escherichia coli E482] gi|323959594|gb|EGB55246.1| transcription elongation proteinGreB [Escherichia coli H489] gi|323970004|gb|EGB65279.1| transcription elongation proteinGreB [Escherichia coli TA007] gi|324116399|gb|EGC10318.1| transcription elongation proteinGreB [Escherichia coli E1167] gi|332085554|gb|EGI90720.1| transcription elongation factor GreB [Shigella boydii 5216-82] gi|332085689|gb|EGI90853.1| transcription elongation factor GreB [Shigella dysenteriae 155-74] gi|332345358|gb|AEE58692.1| transcription elongation factor GreB [Escherichia coli UMNK88] Length = 158 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|317131159|ref|YP_004090473.1| transcription elongation factor GreA [Ethanoligenens harbinense YUAN-3] gi|315469138|gb|ADU25742.1| transcription elongation factor GreA [Ethanoligenens harbinense YUAN-3] Length = 157 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 86/156 (55%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T G K++QEL + E+R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MAKQYVLTDAGLKKLEQELEQLKTEKRKEIAEKIKVALSFGDLSENSEYDEAKNEQAMVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A +E ++ ++ID + + + G+ V + + + YQIVG EAD L+ Sbjct: 61 SRIATIEAMLKNVKLIDDDQLDTEAVNLGSKVQVFDVEFDETVEYQIVGSTEADPDQNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ RAL+G ++GD + P G +++L + Sbjct: 121 SDESPVGRALLGHKVGDEVEAETPAGVLKFKVLNIT 156 >gi|283787960|ref|YP_003367825.1| transcription elongation factor [Citrobacter rodentium ICC168] gi|282951414|emb|CBG91113.1| transcription elongation factor [Citrobacter rodentium ICC168] Length = 157 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD + ++IVG E + +SI SP+ Sbjct: 66 TKCMEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTRRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|298206886|ref|YP_003715065.1| putative transcription elongation factor [Croceibacter atlanticus HTCC2559] gi|83849520|gb|EAP87388.1| putative transcription elongation factor [Croceibacter atlanticus HTCC2559] Length = 158 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 97/155 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVNYYTEEGLKKLRDELDLLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++++LE +++ A VID S + ++ ++V + + +G + Y++V E+D++SG + Sbjct: 61 MKISKLEGVLSNARVIDDSQLDTSKVLIHSSVKIKHQGNGAEMTYKLVAQSESDLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI + L+GK+ GD+ V P G +++++V Sbjct: 121 SVDSPIGKGLLGKQEGDVAEVTTPNGTIKFDVIKV 155 >gi|253681347|ref|ZP_04862145.1| transcription elongation factor GreA [Clostridium botulinum D str. 1873] gi|253562585|gb|EES92036.1| transcription elongation factor GreA [Clostridium botulinum D str. 1873] Length = 159 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EG Sbjct: 4 SKQYIMTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++EN++ A V+D S + D ++ G+ V + + + ++ ++ IVG EAD +S Sbjct: 64 RIVQIENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++GDI+ V P G +EIL++ Sbjct: 124 NESPVGSALIGKKVGDIVDVPVPDGISKFEILEIR 158 >gi|118444643|ref|YP_877135.1| transcription elongation factor GreA [Clostridium novyi NT] gi|166200657|sp|A0PXN3|GREA_CLONN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118135099|gb|ABK62143.1| transcription elongation factor greA [Clostridium novyi NT] Length = 159 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 95/155 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EG Sbjct: 4 SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A V+D S +S D ++ G+ V + + + + ++ IVG EAD +S Sbjct: 64 RIVQLENMLRNANVVDESEISLDAVSVGSIVKVKDYDFDEIIDFHIVGSAEADPMENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++GD+I+V P G +EIL++ Sbjct: 124 NESPVGSALIGKKVGDVINVPVPDGISKFEILEIR 158 >gi|116492493|ref|YP_804228.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] gi|116102643|gb|ABJ67786.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] Length = 160 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 103/158 (65%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D+ P+T G K+++EL + + RP++I+ I AR++GDLSEN+EY++AK+ Q++ Sbjct: 1 MADEKTYPMTLDGKAKLEEELETLKTKTRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +E+++ A++ID ++GD ++ G V E + + Y IVG EAD +G Sbjct: 61 VESRINTVEHMLHYAQIIDNDDIAGDEVSLGRVVEFKELPDEEPEEYTIVGAAEADPMTG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK++GD +S+ PGG+ +IL V Sbjct: 121 KISNDSPIAKALLGKKVGDEVSIATPGGDMKVKILTVK 158 >gi|311695967|gb|ADP98840.1| protein containing prokaryotic transcription elongation factor GreA domain [marine bacterium HP15] Length = 153 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ EGR+ E+ Sbjct: 1 MTKAGETRLREELQKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIEGRIQEI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A+VID++T+ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +SISSP Sbjct: 61 EGKLSAAQVIDVTTIENTGKVIFGTTVHLLNMDTDEQVIYKIVGEDEADIKAGKLSISSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARAL+GK GD++++ P G YEI QV +I Sbjct: 121 IARALVGKSEGDVVAIRVPSGTVEYEIEQVEYI 153 >gi|30022455|ref|NP_834086.1| transcription elongation factor GreA [Bacillus cereus ATCC 14579] gi|296504870|ref|YP_003666570.1| transcription elongation factor GreA [Bacillus thuringiensis BMB171] gi|38372300|sp|Q817Z6|GREA_BACCR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|29898013|gb|AAP11287.1| Transcription elongation factor greA [Bacillus cereus ATCC 14579] gi|296325922|gb|ADH08850.1| transcription elongation factor GreA [Bacillus thuringiensis BMB171] gi|326942161|gb|AEA18057.1| transcription elongation factor GreA [Bacillus thuringiensis serovar chinensis CT-43] Length = 158 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158 >gi|163753412|ref|ZP_02160536.1| transcription elongation factor [Kordia algicida OT-1] gi|161327144|gb|EDP98469.1| transcription elongation factor [Kordia algicida OT-1] Length = 158 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 96/156 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ER + +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTAEGLKKLRDELDHLKNVERLKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++++E +++ A +ID S + ++ +TV + +G + Y +V + EAD+ +G + Sbjct: 61 MRISKMEAVLSTARIIDESQLDTSKVLVLSTVRIKNTTNGMEMTYTLVAESEADLAAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +G+I V P G +E+L++ Sbjct: 121 SVTSPIGKGLLGKSVGEIAEVKVPNGIMKFEVLEIT 156 >gi|313471842|ref|ZP_07812334.1| transcription elongation factor GreA [Lactobacillus jensenii 1153] gi|313449010|gb|EEQ68245.2| transcription elongation factor GreA [Lactobacillus jensenii 1153] Length = 151 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 96/150 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A++ Sbjct: 1 MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SPI Sbjct: 61 EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+AL+GK GD +S+N PGG I V Sbjct: 121 AQALLGKHKGDTVSINTPGGSFDVVINDVK 150 >gi|194017086|ref|ZP_03055698.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Bacillus pumilus ATCC 7061] gi|194010954|gb|EDW20524.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Bacillus pumilus ATCC 7061] Length = 157 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 102/158 (64%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K+++EL + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTEEGKRKLEEELEHLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N+I A++I+ + + ++ G TV+ VE G++++Y IVG EAD G Sbjct: 61 VEGRITTLDNMIRNAKIIE-DEGNSNIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+GK++ D ++V PGGE +I+++ Sbjct: 120 KISNDSPIAKSLLGKQVDDKVTVQTPGGEMFVQIVKIS 157 >gi|317120993|ref|YP_004100996.1| transcription elongation factor GreA [Thermaerobacter marianensis DSM 12885] gi|315590973|gb|ADU50269.1| transcription elongation factor GreA [Thermaerobacter marianensis DSM 12885] Length = 159 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + + Sbjct: 61 GRIIELEKMLRNARIVNDEEIDPTKVNIGSTVHLKDVDTGEEVQYTIVGSNEADPAALRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL G+ +G+++ V P G YEI+++ Sbjct: 121 SYQSPVGKALFGRSVGEVVEVKVPAGTLRYEIVRIE 156 >gi|260061565|ref|YP_003194645.1| transcription elongation factor GreA [Robiginitalea biformata HTCC2501] gi|88785697|gb|EAR16866.1| putative transcription elongation factor [Robiginitalea biformata HTCC2501] Length = 157 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTPEGMKKLKDELNHLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ +TV L + +G + +Y +V + EAD+++G + Sbjct: 61 MKIAKLEEVVANARLIDESQLDTSKVLVLSTVKLRNQQNGQELSYTLVAESEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK++GD + P G +++L++ Sbjct: 121 SVTSPIGKGLLGKKVGDTAEIQVPNGTLKFDVLEIT 156 >gi|157372858|ref|YP_001480847.1| transcription elongation factor GreB [Serratia proteamaculans 568] gi|157324622|gb|ABV43719.1| transcription elongation factor GreB [Serratia proteamaculans 568] Length = 157 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTPLITREGYDKLKQELDYLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+D S ++ FGA +VE G+ K ++IVG E + +S Sbjct: 61 RVRYLTKCLEQLKVVDHSPQQEGKVFFGAW-VVVENEDGEIKRFRIVGYDEIFGRRDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +VN P G+ + + ++ ++ Sbjct: 120 IDSPMARALLKKEVGDSATVNTPAGDALWYVNEIEYV 156 >gi|187730872|ref|YP_001882083.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94] gi|187427864|gb|ACD07138.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94] Length = 158 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNSIEYV 156 >gi|222056183|ref|YP_002538545.1| transcription elongation factor GreB [Geobacter sp. FRC-32] gi|221565472|gb|ACM21444.1| transcription elongation factor GreB [Geobacter sp. FRC-32] Length = 161 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G ++++E + + ERPR+ +A+S+A A GD SENAEY K+ + Sbjct: 1 MSNSNYITPEGARRLREEFEYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V++ +I FGA V L + G++ Y+IVG E D G + Sbjct: 61 RRVRFLMKRLDVLTVVEDQPERKGKIFFGAWVRLENEE-GNEVVYRIVGPDEFDPGKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+A+ALIGK+ GD + V P G T+ I+ V + Sbjct: 120 SVDSPMAKALIGKQEGDEVVVRRPAGVATFTIIDVGY 156 >gi|296272431|ref|YP_003655062.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM 7299] gi|296096605|gb|ADG92555.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM 7299] Length = 161 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 107/156 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T+ G+ KI EL + + ERP + A+ EAR GDL ENAEY AAKE L + Sbjct: 1 MEKEPMTNVGYKKITGELDFLKSHERPETVIALEEARQLGDLKENAEYHAAKEKLKLIDV 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL ++++A +ID S++ DR++FG+TV LV ++ ++ Y IVG E++ + G++S Sbjct: 61 QIAELGAVLSKAVIIDPSSLPHDRVSFGSTVKLVNTDTDEEYEYSIVGGVESNAEKGMIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+A+ L+GKE GD S PGG KT+E+L+V + Sbjct: 121 FNSPLAKQLMGKEEGDEFSATLPGGVKTFEVLEVFY 156 >gi|99034137|ref|ZP_01314235.1| hypothetical protein Wendoof_01000975 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 164 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +++K P+T +GF+ IQ EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E Sbjct: 5 IINKFPMTREGFEDIQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163 >gi|301165527|emb|CBW25098.1| transcription elongation factor greA [Bacteriovorax marinus SJ] Length = 158 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 105/158 (66%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T +G+DK+Q EL + ER + I+EAR GDL ENAEY +AKE Q++ E Sbjct: 1 MSNETPITKEGYDKVQAELDHLIKVEREELKTTIAEARELGDLKENAEYHSAKEKQSVVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ +L+ +I A+VID T+S D+I FGATV+L+ + Y+IVG+ E++++ G + Sbjct: 61 GRIMQLQGVIANAQVIDPKTVSTDKIVFGATVTLLNVEEDETVVYKIVGEIESNMKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+ +A+IGKE GD + V AP G+ YE+ +I Sbjct: 121 SYKSPLGKAVIGKEEGDTVIVKAPKGDIEYEVESFEYI 158 >gi|206969603|ref|ZP_03230557.1| transcription elongation factor GreA [Bacillus cereus AH1134] gi|206735291|gb|EDZ52459.1| transcription elongation factor GreA [Bacillus cereus AH1134] Length = 158 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIIKDTGEISTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158 >gi|110807238|ref|YP_690758.1| transcription elongation factor GreB [Shigella flexneri 5 str. 8401] gi|161485871|ref|NP_709179.2| transcription elongation factor GreB [Shigella flexneri 2a str. 301] gi|161486379|ref|NP_839482.2| transcription elongation factor GreB [Shigella flexneri 2a str. 2457T] gi|110616786|gb|ABF05453.1| Transcription elongation factor [Shigella flexneri 5 str. 8401] gi|281602756|gb|ADA75740.1| Transcription elongation factor and transcript cleavage factor [Shigella flexneri 2002017] gi|313647298|gb|EFS11750.1| transcription elongation factor GreB [Shigella flexneri 2a str. 2457T] gi|332749495|gb|EGJ79912.1| transcription elongation factor GreB [Shigella flexneri K-671] gi|332750345|gb|EGJ80756.1| transcription elongation factor GreB [Shigella flexneri 4343-70] gi|332751378|gb|EGJ81781.1| transcription elongation factor GreB [Shigella flexneri 2747-71] gi|332763611|gb|EGJ93850.1| transcription elongation factor GreB [Shigella flexneri 2930-71] gi|332996406|gb|EGK16033.1| transcription elongation factor GreB [Shigella flexneri VA-6] gi|332996647|gb|EGK16272.1| transcription elongation factor GreB [Shigella flexneri K-272] gi|332997483|gb|EGK17099.1| transcription elongation factor GreB [Shigella flexneri K-218] gi|333012511|gb|EGK31892.1| transcription elongation factor GreB [Shigella flexneri K-304] gi|333013054|gb|EGK32430.1| transcription elongation factor GreB [Shigella flexneri K-227] Length = 158 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 156 >gi|91776106|ref|YP_545862.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91710093|gb|ABE50021.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 165 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D K +T +G+ +++ E + ERP+++ ++ A + GD SEN +Y K+ Sbjct: 1 MADQKNYITPEGYARLKDEFEQLYKVERPKVVSDVAWAASNGDRSENGDYIYGKKRLRQI 60 Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ L + A V+D + ++I FGA V L + + +Y+IVG E D G Sbjct: 61 DSRLRFLMKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ARAL+GK+ GD+I V P GE+ +EI+ V + Sbjct: 121 YISWISPLARALLGKQPGDVIRVETPAGEERFEIVDVSY 159 >gi|26991405|ref|NP_746830.1| transcription elongation factor GreA [Pseudomonas putida KT2440] gi|148549790|ref|YP_001269892.1| transcription elongation factor GreA [Pseudomonas putida F1] gi|167035714|ref|YP_001670945.1| transcription elongation factor GreA [Pseudomonas putida GB-1] gi|37999617|sp|Q88DU7|GREA_PSEPK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|24986475|gb|AAN70294.1|AE016670_4 transcription elongation factor GreA [Pseudomonas putida KT2440] gi|148513848|gb|ABQ80708.1| transcription elongation factor GreA [Pseudomonas putida F1] gi|166862202|gb|ABZ00610.1| transcription elongation factor GreA [Pseudomonas putida GB-1] gi|313500631|gb|ADR61997.1| GreA [Pseudomonas putida BIRD-1] Length = 160 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S Sbjct: 65 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +PIARA+IGKE GD + V P G YEI++V I Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160 >gi|300726104|ref|ZP_07059561.1| transcription elongation factor GreA [Prevotella bryantii B14] gi|299776574|gb|EFI73127.1| transcription elongation factor GreA [Prevotella bryantii B14] Length = 154 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 87/151 (57%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + E PR+ +AISEAR GDLSEN EY AAK Q GR+ Sbjct: 3 YMSQEGYDKLVAELQHLTKVELPRVTEAISEARDKGDLSENFEYHAAKREQGRLLGRIRF 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +N++ A VID S +S D + + V L + NY IV EA ++ G +SI SP Sbjct: 63 KQNVLAHARVIDSSRLSADNVQLLSKVKLTNTGNNASMNYTIVSPHEASLKEGKISIKSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+AL+ K++GD++ V P G I + Sbjct: 123 IAQALLNKKVGDVVEVRVPAGLLKLRIDNIE 153 >gi|116749520|ref|YP_846207.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans MPOB] gi|229485909|sp|A0LK20|GREA_SYNFM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116698584|gb|ABK17772.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans MPOB] Length = 156 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 109/155 (70%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++P+T +GF++++ EL+ Q++ERP +I+AI EAR++GD+SENAEY+AAKE Q + EG Sbjct: 1 MPRVPITKEGFERLKIELQRLQRDERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L + E+++ S R FG+TV + + +G+ +Y++VG EADVQSG +S Sbjct: 61 RIQDLCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + SP+ +ALIGKE G+ I V P G + E+L++ Sbjct: 121 VVSPLGKALIGKEEGEEIRVQTPKGVRNIEVLEIR 155 >gi|313681806|ref|YP_004059544.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM 16994] gi|313154666|gb|ADR33344.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM 16994] Length = 176 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 104/157 (66%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P++ +G+D++ +E ++ + E+PR+ + A GD SENAEY AAKE + Sbjct: 1 MSQNEPMSPRGYDELLREFKYLKDIEKPRVNQEKQRAAELGDRSENAEYHAAKEKLRHID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L ++I +A++ID S ++ R FGAT+++ + NS ++ +Y I G E++ ++GL+ Sbjct: 61 KRLFYLNSMIEKAQIIDPSVLNHSRAHFGATITIADINSDEEFSYTICGTLESEPENGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+A+A++GKE GD SV+ PGG+K+YE+ + + Sbjct: 121 SVHSPLAKAMLGKEEGDEFSVHLPGGKKSYEVSAITY 157 >gi|150014996|ref|YP_001307250.1| transcription elongation factor GreA [Clostridium beijerinckii NCIMB 8052] gi|229485763|sp|A6LPL4|GREA_CLOB8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149901461|gb|ABR32294.1| transcription elongation factor GreA [Clostridium beijerinckii NCIMB 8052] Length = 160 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 89/155 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG Sbjct: 4 SKQYVMTYEGVKKLESELEYLKTVKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+GK++GD++ V P G +EIL + Sbjct: 124 NESPVGNALVGKKVGDVVEVTVPDGVNKFEILGIS 158 >gi|228954664|ref|ZP_04116687.1| Transcription elongation factor greA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228981071|ref|ZP_04141372.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407] gi|228778612|gb|EEM26878.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407] gi|228804991|gb|EEM51587.1| Transcription elongation factor greA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 161 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161 >gi|114331547|ref|YP_747769.1| transcription elongation factor GreB [Nitrosomonas eutropha C91] gi|114308561|gb|ABI59804.1| transcription elongation factor GreB [Nitrosomonas eutropha C91] Length = 182 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 26 KNYITPGGYQRLKDEFDQLWKVERPELVKIVSWAASNGDRSENGDYIYGKRRLREIDRRL 85 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE+ID + D++ FGATV++ + G ++ Y IVG EA+ G +S Sbjct: 86 RFLSRRMDHAEIIDPAQRGECDQVFFGATVTVYDAQ-GKEQTYSIVGMDEAEPSCGRISW 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD++S+ PGG + E++++ + Sbjct: 145 ISPLARALLKAREGDVVSLQTPGGLEELEVIKIRY 179 >gi|169632632|ref|YP_001706368.1| transcription elongation factor GreA [Acinetobacter baumannii SDF] gi|238688251|sp|B0VSL8|GREA_ACIBS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169151424|emb|CAP00158.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Acinetobacter baumannii] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A+VI + + R+ FG TV++ ++ ++ Y+IVGD EAD + + Sbjct: 61 RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SPIA L+GK+ GD + + P G Sbjct: 121 SVNSPIALGLLGKKEGDEVKITTPQG 146 >gi|255527650|ref|ZP_05394510.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296186915|ref|ZP_06855316.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255508663|gb|EET85043.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296048629|gb|EFG88062.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 160 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T +G K++ EL + + +R I + I A ++GDLSEN+EY AK Q EGR Sbjct: 6 KKYIMTYEGVKKLESELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN++ A ++D S + D ++ G+ V + + + ++ Y IVG EAD + +S Sbjct: 66 IIQLENMLKNATIVDESEIPLDVVSVGSIVKVKDYDFDEEVEYNIVGSAEADPMNNKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ R L+GK++GDII V P G YEIL + Sbjct: 126 ESPVGRGLVGKKIGDIIEVQVPDGVSKYEILGIR 159 >gi|288572943|ref|ZP_06391300.1| transcription elongation factor GreA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568684|gb|EFC90241.1| transcription elongation factor GreA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 164 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 1 MVDK------IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE 54 M DK I +T +G+D++ +EL+ + EER + + I EAR++GDLSENAEY AAK+ Sbjct: 1 MSDKTAVSDGIEMTKEGYDRLYEELKRLRSEERYVVAQRIEEARSFGDLSENAEYAAAKD 60 Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q E R+ LE +++A+VID S++ G +A G TV + + + +Y IVG +EAD Sbjct: 61 EQAKLESRIQRLEYQLSKAKVIDSSSLDGSHVALGTTVKIEDIGNKKTFDYSIVGSEEAD 120 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +S SP+ +AL+GK GD ISV P G + IL++ Sbjct: 121 PKKSKISSMSPVGQALMGKHPGDEISVKVPNGMRKLRILEIR 162 >gi|163857070|ref|YP_001631368.1| transcription elongation factor GreB [Bordetella petrii DSM 12804] gi|163260798|emb|CAP43100.1| greB [Bordetella petrii] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 30 YMTPAGYARLRDELAHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEV+D + D++ FGATV+ ++K GD IVG EA+ +G +S S Sbjct: 90 LTKRLDIAEVVDPAAQPNRDQVFFGATVTYLDKG-GDTHEVTIVGVDEAEPLAGKISWIS 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARALI GD + + PGG + +IL+V + Sbjct: 149 PVARALIKAREGDTVVLRTPGGVEELDILEVRY 181 >gi|32034024|ref|ZP_00134268.1| COG0782: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208420|ref|YP_001053645.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae L20] gi|165976363|ref|YP_001651956.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252987|ref|ZP_07339142.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245856|ref|ZP_07527941.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247932|ref|ZP_07529966.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250188|ref|ZP_07532146.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254829|ref|ZP_07536655.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259271|ref|ZP_07541000.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261432|ref|ZP_07543105.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097212|gb|ABN74040.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876464|gb|ABY69512.1| transcription elongation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648178|gb|EFL78379.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853216|gb|EFM85436.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855582|gb|EFM87751.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857787|gb|EFM89885.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862200|gb|EFM94168.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866638|gb|EFM98497.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868889|gb|EFN00693.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVSLVNADTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158 >gi|145220082|ref|YP_001130791.1| transcription elongation factor GreA [Prosthecochloris vibrioformis DSM 265] gi|189042244|sp|A4SFN0|GREA_PROVI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145206246|gb|ABP37289.1| transcription elongation factor GreA [Chlorobium phaeovibrioides DSM 265] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T G+++++ EL R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRVYLTRDGYNRLKDELHELLHVTRAEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119 R+A+LE+ ++ A ++D + D++ +V L+ + + Y +V +E+D G Sbjct: 61 ARIADLESKLSSATILDPKHIKTDKVYILTSVELLNLDDKKETLEYTLVSSEESDSDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK +GD +++ P GE YE+ ++ Sbjct: 121 ISVRSPVGRALIGKAVGDKVTIIVPKGELHYEVKKI 156 >gi|240143459|ref|ZP_04742060.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|257204492|gb|EEV02777.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 93/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 1 MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G + Sbjct: 61 ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFEEELEYKIVGSTEANSLKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GD ++V P GE +Y++L + Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155 >gi|32472148|ref|NP_865142.1| transcription elongation factor greA [Rhodopirellula baltica SH 1] gi|77416496|sp|Q7UVA0|GREA_RHOBA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|32397520|emb|CAD72826.1| transcription elongation factor greA [Rhodopirellula baltica SH 1] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 103/157 (65%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+ +P+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + Sbjct: 1 MVESVPMTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLM 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ EL + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + Sbjct: 61 AKINELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++SP + L+GK++G+ V+ P G+ ++IL++ + Sbjct: 121 LVTSPFGQGLVGKKVGETAEVDVPAGKLKFKILKIEF 157 >gi|191167876|ref|ZP_03029680.1| transcription elongation factor GreB [Escherichia coli B7A] gi|190902049|gb|EDV61794.1| transcription elongation factor GreB [Escherichia coli B7A] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 156 >gi|82545761|ref|YP_409708.1| transcription elongation factor GreB [Shigella boydii Sb227] gi|82778777|ref|YP_405126.1| transcription elongation factor GreB [Shigella dysenteriae Sd197] gi|110643639|ref|YP_671369.1| transcription elongation factor GreB [Escherichia coli 536] gi|117625673|ref|YP_858996.1| transcription elongation factor GreB [Escherichia coli APEC O1] gi|157155011|ref|YP_001464863.1| transcription elongation factor GreB [Escherichia coli E24377A] gi|161367507|ref|NP_289946.2| transcription elongation factor GreB [Escherichia coli O157:H7 EDL933] gi|161486092|ref|NP_756047.2| transcription elongation factor GreB [Escherichia coli CFT073] gi|162139752|ref|NP_312275.2| transcription elongation factor GreB [Escherichia coli O157:H7 str. Sakai] gi|168747116|ref|ZP_02772138.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4113] gi|168753159|ref|ZP_02778166.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4401] gi|168759431|ref|ZP_02784438.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4501] gi|168765754|ref|ZP_02790761.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4486] gi|168772702|ref|ZP_02797709.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4196] gi|168779490|ref|ZP_02804497.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4076] gi|168785211|ref|ZP_02810218.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC869] gi|168797177|ref|ZP_02822184.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC508] gi|170680405|ref|YP_001745654.1| transcription elongation factor GreB [Escherichia coli SMS-3-5] gi|191171514|ref|ZP_03033062.1| transcription elongation factor GreB [Escherichia coli F11] gi|193061828|ref|ZP_03042925.1| transcription elongation factor GreB [Escherichia coli E22] gi|194426931|ref|ZP_03059483.1| transcription elongation factor GreB [Escherichia coli B171] gi|195934895|ref|ZP_03080277.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4024] gi|208806096|ref|ZP_03248433.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4206] gi|208813018|ref|ZP_03254347.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4045] gi|208821026|ref|ZP_03261346.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4042] gi|209400461|ref|YP_002272841.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4115] gi|215488687|ref|YP_002331118.1| transcription elongation factor GreB [Escherichia coli O127:H6 str. E2348/69] gi|217325218|ref|ZP_03441302.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14588] gi|218550664|ref|YP_002384455.1| transcription elongation factor GreB [Escherichia fergusonii ATCC 35469] gi|218560464|ref|YP_002393377.1| transcription elongation factor GreB [Escherichia coli S88] gi|218691683|ref|YP_002399895.1| transcription elongation factor GreB [Escherichia coli ED1a] gi|218697089|ref|YP_002404756.1| transcription elongation factor GreB [Escherichia coli 55989] gi|218702151|ref|YP_002409780.1| transcription elongation factor GreB [Escherichia coli IAI39] gi|218706997|ref|YP_002414516.1| transcription elongation factor GreB [Escherichia coli UMN026] gi|254795321|ref|YP_003080158.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14359] gi|260846190|ref|YP_003223968.1| transcription elongation factor GreB [Escherichia coli O103:H2 str. 12009] gi|260857513|ref|YP_003231404.1| transcription elongation factor GreB [Escherichia coli O26:H11 str. 11368] gi|260870132|ref|YP_003236534.1| transcription elongation factor GreB [Escherichia coli O111:H- str. 11128] gi|261224687|ref|ZP_05938968.1| transcription elongation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261254418|ref|ZP_05946951.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. FRIK966] gi|291284742|ref|YP_003501560.1| Transcription elongation factor greB [Escherichia coli O55:H7 str. CB9615] gi|293406984|ref|ZP_06650908.1| greB [Escherichia coli FVEC1412] gi|293412823|ref|ZP_06655491.1| transcription elongation factor GreB [Escherichia coli B354] gi|293416808|ref|ZP_06659445.1| transcription elongation factor GreB [Escherichia coli B185] gi|293453712|ref|ZP_06664131.1| transcription elongation factor GreB [Escherichia coli B088] gi|298382726|ref|ZP_06992321.1| transcription elongation factor GreB [Escherichia coli FVEC1302] gi|306816256|ref|ZP_07450394.1| transcription elongation factor GreB [Escherichia coli NC101] gi|307311930|ref|ZP_07591568.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309785849|ref|ZP_07680480.1| transcription elongation factor GreB [Shigella dysenteriae 1617] gi|331659695|ref|ZP_08360633.1| transcription elongation factor GreB [Escherichia coli TA206] gi|331665011|ref|ZP_08365912.1| transcription elongation factor GreB [Escherichia coli TA143] gi|331670228|ref|ZP_08371067.1| transcription elongation factor GreB [Escherichia coli TA271] gi|331685046|ref|ZP_08385632.1| transcription elongation factor GreB [Escherichia coli H299] gi|54037215|sp|P64274|GREB_ECO57 RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|54041323|sp|P64273|GREB_ECOL6 RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|166007061|pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007062|pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007063|pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007064|pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007065|pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|166007066|pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb At 2.6a Resolution gi|81242925|gb|ABB63635.1| transcription elongation factor [Shigella dysenteriae Sd197] gi|81247172|gb|ABB67880.1| Transcription elongation factor [Shigella boydii Sb227] gi|110345231|gb|ABG71468.1| transcription elongation factor GreB [Escherichia coli 536] gi|115514797|gb|ABJ02872.1| transcription elongation factor GreB [Escherichia coli APEC O1] gi|157077041|gb|ABV16749.1| transcription elongation factor GreB [Escherichia coli E24377A] gi|170518123|gb|ACB16301.1| transcription elongation factor GreB [Escherichia coli SMS-3-5] gi|187771428|gb|EDU35272.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4196] gi|188018359|gb|EDU56481.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4113] gi|189002402|gb|EDU71388.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4076] gi|189358929|gb|EDU77348.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4401] gi|189364381|gb|EDU82800.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4486] gi|189369538|gb|EDU87954.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4501] gi|189374281|gb|EDU92697.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC869] gi|189380006|gb|EDU98422.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC508] gi|190908141|gb|EDV67732.1| transcription elongation factor GreB [Escherichia coli F11] gi|192932618|gb|EDV85215.1| transcription elongation factor GreB [Escherichia coli E22] gi|194414892|gb|EDX31162.1| transcription elongation factor GreB [Escherichia coli B171] gi|208725897|gb|EDZ75498.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4206] gi|208734295|gb|EDZ82982.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4045] gi|208741149|gb|EDZ88831.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4042] gi|209161861|gb|ACI39294.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4115] gi|215266759|emb|CAS11199.1| transcription elongation factor [Escherichia coli O127:H6 str. E2348/69] gi|217321439|gb|EEC29863.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. TW14588] gi|218353821|emb|CAV00173.1| transcription elongation factor [Escherichia coli 55989] gi|218358205|emb|CAQ90852.1| transcription elongation factor [Escherichia fergusonii ATCC 35469] gi|218367233|emb|CAR05007.1| transcription elongation factor [Escherichia coli S88] gi|218372137|emb|CAR19999.1| transcription elongation factor [Escherichia coli IAI39] gi|218429247|emb|CAR10203.2| transcription elongation factor [Escherichia coli ED1a] gi|218434094|emb|CAR15011.1| transcription elongation factor [Escherichia coli UMN026] gi|222035108|emb|CAP77853.1| Transcription elongation factor greB [Escherichia coli LF82] gi|254594721|gb|ACT74082.1| transcription elongation factor [Escherichia coli O157:H7 str. TW14359] gi|257756162|dbj|BAI27664.1| transcription elongation factor GreB [Escherichia coli O26:H11 str. 11368] gi|257761337|dbj|BAI32834.1| transcription elongation factor GreB [Escherichia coli O103:H2 str. 12009] gi|257766488|dbj|BAI37983.1| transcription elongation factor GreB [Escherichia coli O111:H- str. 11128] gi|281180438|dbj|BAI56768.1| transcription elongation factor GreB [Escherichia coli SE15] gi|284923398|emb|CBG36492.1| transcription elongation factor [Escherichia coli 042] gi|290764615|gb|ADD58576.1| Transcription elongation factor greB [Escherichia coli O55:H7 str. CB9615] gi|291321838|gb|EFE61269.1| transcription elongation factor GreB [Escherichia coli B088] gi|291425795|gb|EFE98829.1| greB [Escherichia coli FVEC1412] gi|291431384|gb|EFF04369.1| transcription elongation factor GreB [Escherichia coli B185] gi|291468470|gb|EFF10963.1| transcription elongation factor GreB [Escherichia coli B354] gi|294493288|gb|ADE92044.1| transcription elongation factor GreB [Escherichia coli IHE3034] gi|298276562|gb|EFI18080.1| transcription elongation factor GreB [Escherichia coli FVEC1302] gi|305850652|gb|EFM51109.1| transcription elongation factor GreB [Escherichia coli NC101] gi|306908074|gb|EFN38574.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307555492|gb|ADN48267.1| transcription elongation factor and transcript cleavage [Escherichia coli ABU 83972] gi|307628467|gb|ADN72771.1| transcription elongation factor GreB [Escherichia coli UM146] gi|308926969|gb|EFP72445.1| transcription elongation factor GreB [Shigella dysenteriae 1617] gi|312947954|gb|ADR28781.1| transcription elongation factor GreB [Escherichia coli O83:H1 str. NRG 857C] gi|315062685|gb|ADT77012.1| transcription elongation factor [Escherichia coli W] gi|320175773|gb|EFW50859.1| Transcription elongation factor GreB [Shigella dysenteriae CDC 74-1112] gi|320186724|gb|EFW61447.1| Transcription elongation factor GreB [Shigella flexneri CDC 796-83] gi|320191583|gb|EFW66233.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. EC1212] gi|320197364|gb|EFW71979.1| Transcription elongation factor GreB [Escherichia coli WV_060327] gi|320639688|gb|EFX09282.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. G5101] gi|320645186|gb|EFX14202.1| transcription elongation factor GreB [Escherichia coli O157:H- str. 493-89] gi|320650497|gb|EFX18963.1| transcription elongation factor GreB [Escherichia coli O157:H- str. H 2687] gi|320655689|gb|EFX23612.1| transcription elongation factor GreB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661473|gb|EFX28888.1| transcription elongation factor GreB [Escherichia coli O55:H7 str. USDA 5905] gi|320666496|gb|EFX33479.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. LSU-61] gi|323154239|gb|EFZ40442.1| transcription elongation factor GreB [Escherichia coli EPECa14] gi|323162791|gb|EFZ48628.1| transcription elongation factor GreB [Escherichia coli E128010] gi|323174039|gb|EFZ59667.1| transcription elongation factor GreB [Escherichia coli LT-68] gi|323179069|gb|EFZ64643.1| transcription elongation factor GreB [Escherichia coli 1180] gi|323182866|gb|EFZ68267.1| transcription elongation factor GreB [Escherichia coli 1357] gi|323189005|gb|EFZ74289.1| transcription elongation factor GreB [Escherichia coli RN587/1] gi|323376727|gb|ADX48995.1| transcription elongation factor GreB [Escherichia coli KO11] gi|323944372|gb|EGB40447.1| transcription elongation protein GreB [Escherichia coli H120] gi|323950063|gb|EGB45946.1| transcription elongation proteinGreB [Escherichia coli H252] gi|323954657|gb|EGB50439.1| transcription elongation proteinGreB [Escherichia coli H263] gi|323966219|gb|EGB61655.1| transcription elongation proteinGreB [Escherichia coli M863] gi|323974790|gb|EGB69902.1| transcription elongation proteinGreB [Escherichia coli TW10509] gi|324111718|gb|EGC05698.1| transcription elongation proteinGreB [Escherichia fergusonii B253] gi|326337631|gb|EGD61466.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. 1044] gi|326344618|gb|EGD68367.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str. 1125] gi|327251041|gb|EGE62734.1| transcription elongation factor GreB [Escherichia coli STEC_7v] gi|330909439|gb|EGH37953.1| transcription elongation factor GreB [Escherichia coli AA86] gi|331052910|gb|EGI24943.1| transcription elongation factor GreB [Escherichia coli TA206] gi|331057521|gb|EGI29507.1| transcription elongation factor GreB [Escherichia coli TA143] gi|331062290|gb|EGI34210.1| transcription elongation factor GreB [Escherichia coli TA271] gi|331077417|gb|EGI48629.1| transcription elongation factor GreB [Escherichia coli H299] gi|332090241|gb|EGI95339.1| transcription elongation factor GreB [Shigella boydii 3594-74] Length = 158 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|168187057|ref|ZP_02621692.1| transcription elongation factor GreA [Clostridium botulinum C str. Eklund] gi|169295044|gb|EDS77177.1| transcription elongation factor GreA [Clostridium botulinum C str. Eklund] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 94/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EG Sbjct: 4 SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFAEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A V+D S +S D ++ G+ V + + + ++ IVG EAD +S Sbjct: 64 RIVQLENMLRNANVVDESEISLDTVSVGSIVKVKDYEFDEIIDFHIVGSAEADPMENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++GD+++V P G +EIL++ Sbjct: 124 NESPVGSALIGKKVGDVVNVPVPDGISKFEILEIR 158 >gi|149921005|ref|ZP_01909465.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1] gi|149818137|gb|EDM77593.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1] Length = 155 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 104/151 (68%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K++ ELR ++ +RP+ + I A +GDL ENAEY AAKE Q RMA L Sbjct: 1 MTPAGLQKLRDELRNIKEVQRPQNVADIETALGHGDLRENAEYHAAKERQAELAARMAYL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ I+ A+VID + M+ +++AFGATV+L++ ++ ++ Y +VG+ E +V++G +SI++PI Sbjct: 61 ESHISLAQVIDPAEMNSNKVAFGATVTLMDADTEEEVVYCLVGEDETNVKAGKISITAPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKE GD +V P G + +EI+ V + Sbjct: 121 ARALLGKEAGDDATVRLPKGTRDFEIINVEY 151 >gi|37197158|dbj|BAC92999.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L Sbjct: 31 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 90 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISSP 125 + +++D + ++ FGA V + +G+ ++IVG +E G +SI SP Sbjct: 91 SKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYISIDSP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ KE+ D + V P G K + I + + Sbjct: 150 MARALLKKEVDDEVQVPTPSGIKEWFINSIEY 181 >gi|229098851|ref|ZP_04229787.1| Transcription elongation factor greA [Bacillus cereus Rock3-29] gi|229105013|ref|ZP_04235667.1| Transcription elongation factor greA [Bacillus cereus Rock3-28] gi|229117876|ref|ZP_04247238.1| Transcription elongation factor greA [Bacillus cereus Rock1-3] gi|228665533|gb|EEL21013.1| Transcription elongation factor greA [Bacillus cereus Rock1-3] gi|228678390|gb|EEL32613.1| Transcription elongation factor greA [Bacillus cereus Rock3-28] gi|228684524|gb|EEL38466.1| Transcription elongation factor greA [Bacillus cereus Rock3-29] Length = 182 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 31 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 90 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 91 QLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 150 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 151 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 182 >gi|212634061|ref|YP_002310586.1| transcription elongation factor GreA [Shewanella piezotolerans WP3] gi|212555545|gb|ACJ27999.1| Prokaryotic transcription elongation factor GreA [Shewanella piezotolerans WP3] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++++EL + E RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++ Sbjct: 1 MTIIGAEQLRKELDILKFERRPAIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ A++ID++TM R+ FG TV+++ ++ ++ Y+IVG+ EA+V+ L+S+SSP Sbjct: 61 EGKLSHAQIIDVTTMPNTGRVIFGTTVTILNIDTDEEVTYRIVGEDEANVKENLLSVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR L+GK + D IS+ PGG +EI +V +I Sbjct: 121 IARGLVGKSVDDEISITTPGGTSDFEITKVEYI 153 >gi|154686872|ref|YP_001422033.1| transcription elongation factor GreA [Bacillus amyloliquefaciens FZB42] gi|308174431|ref|YP_003921136.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7] gi|166200649|sp|A7Z726|GREA_BACA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|154352723|gb|ABS74802.1| GreA [Bacillus amyloliquefaciens FZB42] gi|307607295|emb|CBI43666.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVFPMTHEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G Sbjct: 61 VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L+G+++ + ++V PGGE +I+++ Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKIS 157 >gi|119897715|ref|YP_932928.1| transcription elongation factor GreB [Azoarcus sp. BH72] gi|119670128|emb|CAL94041.1| putative transcription elongation factor [Azoarcus sp. BH72] Length = 222 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ Sbjct: 67 KNYMTRRGYDALRTELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 126 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AEV+D D++ FGATV++ + + D++ +QIVG EA+ G +S Sbjct: 127 RFLIKRIESAEVVDPERQENVDQVFFGATVTITDADGEDEQTWQIVGVDEANASEGRISW 186 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ +LG+ + +P G + E++ + ++ Sbjct: 187 ISPLARALLKVKLGETVRFMSPAGPREIEVVDIRYV 222 >gi|228902907|ref|ZP_04067048.1| Transcription elongation factor greA [Bacillus thuringiensis IBL 4222] gi|228856691|gb|EEN01210.1| Transcription elongation factor greA [Bacillus thuringiensis IBL 4222] Length = 161 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161 >gi|170695455|ref|ZP_02886600.1| transcription elongation factor GreA [Burkholderia graminis C4D1M] gi|170139646|gb|EDT07829.1| transcription elongation factor GreA [Burkholderia graminis C4D1M] Length = 141 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 80/140 (57%), Positives = 101/140 (72%), Gaps = 1/140 (0%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 + + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+AE+E+ + A+VID S Sbjct: 2 QRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIAEIESKLAGAQVIDPS 61 Query: 80 TMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 + D R+ FGATV L + +SG YQIVGD EAD+ GL+SISSPIARALIGK GD+ Sbjct: 62 QVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISISSPIARALIGKSEGDV 121 Query: 139 ISVNAPGGEKTYEILQVLWI 158 SV APGG + YEI+ V ++ Sbjct: 122 ASVQAPGGVREYEIIAVSYV 141 >gi|149370905|ref|ZP_01890500.1| transcription elongation factor [unidentified eubacterium SCB49] gi|149355691|gb|EDM44249.1| transcription elongation factor [unidentified eubacterium SCB49] Length = 158 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 92/156 (58%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G +++EL + ERP AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTLEGLKSLKEELNQLKDVERPAASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE I+ A VID S + ++ +TV + +G Y++V E+D+++G + Sbjct: 61 MRISKLEAIVANARVIDESQLDTSKVLIHSTVKIKNATNGATMTYKLVAQSESDLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GK +GD ++ P G +EI+++ Sbjct: 121 SVDSPIGKGLLGKTVGDTAAIQVPSGTMNFEIVEIT 156 >gi|21674267|ref|NP_662332.1| transcription elongation factor GreA [Chlorobium tepidum TLS] gi|25452984|sp|Q8KCH5|GREA_CHLTE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21647437|gb|AAM72674.1| transcription elongation factor GreA [Chlorobium tepidum TLS] Length = 159 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL E R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLMTETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 ++ E+EN + A ++D + DR+ +V L ++ D+ Y +V +EAD G Sbjct: 61 AKIGEIENKLASATILDPKQIKTDRVYILTSVKLRNLDAEDEIIEYTLVSSEEADSDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ R+LIGK +GD ++++ P GE YEIL + Sbjct: 121 ISVRSPVGRSLIGKSVGDKVTISVPKGELHYEILDI 156 >gi|152977979|ref|YP_001343608.1| transcription elongation factor GreB [Actinobacillus succinogenes 130Z] gi|150839702|gb|ABR73673.1| transcription elongation factor GreB [Actinobacillus succinogenes 130Z] Length = 158 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWNALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L ++ G+ K Y+IVG E D + Sbjct: 61 RRVRFLMKRLEVLQIVDYHSRQEGKVFFGAWVELENED-GEAKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ARALIGK + D + V P G+ T I ++ + Sbjct: 120 SVDSPVARALIGKTVDDEVRVETPAGKVTLYINEIWY 156 >gi|325276153|ref|ZP_08141959.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51] gi|324098713|gb|EGB96753.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51] Length = 153 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++EL + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ ++ Sbjct: 1 MTVQGARALEEELTFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S S+P Sbjct: 61 EGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKKGKLSNSAP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARA+IGKE GD + V P G YEI++V I Sbjct: 121 IARAIIGKEEGDTVVVKTPNGTVEYEIVEVKHI 153 >gi|293390854|ref|ZP_06635188.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951388|gb|EFE01507.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 160 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D + + Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENED-GEVKQYRIVGCDEFDPANNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK+ D I+V+ P G+ + ++ + Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156 >gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13] Length = 157 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P+T G DK+ QEL + R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAQEKVYPMTQAGKDKLVQELENLKSVRRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LE ++ A++I D + G TV+ VE G+++ Y IVG EAD G Sbjct: 61 VEGRITLLEQMVRNAKIIQEDK-DTDAVGLGKTVTFVELPDGEEETYTIVGSAEADPFEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +L+GK + D +++ PGGE +I+ V Sbjct: 120 NISNESPMGSSLMGKRVNDEVTIQTPGGEMNVKIVSVK 157 >gi|261867402|ref|YP_003255324.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412734|gb|ACX82105.1| transcription elongation factor GreB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 160 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D + + Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQESKVFFGAWVELENED-GEVKQYRIVGCDEFDPANNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK+ D I+V+ P G+ + ++ + Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156 >gi|104780017|ref|YP_606515.1| transcription elongation factor GreA [Pseudomonas entomophila L48] gi|95109004|emb|CAK13700.1| transcription elongation factor (Transcript cleavage factor greA) [Pseudomonas entomophila L48] Length = 160 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S Sbjct: 65 RDIEGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +PIARA+IGKE GD + V P G YEI++V I Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160 >gi|327399334|ref|YP_004340203.1| transcription elongation factor GreA [Hippea maritima DSM 10411] gi|327181963|gb|AEA34144.1| transcription elongation factor GreA [Hippea maritima DSM 10411] Length = 156 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 103/156 (66%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K+ +T +G+ K+ +E+ Q+ +RP IIK I EARA GDLSENAEY AAKE L E Sbjct: 1 MAEKMLITPEGYRKLLEEMEDLQKNQRPAIIKEIEEARAKGDLSENAEYHAAKEKHALIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++EL I A+V+D T+ DR+ FG V L + ++ Y IVG+ E+D ++G + Sbjct: 61 NRISELSKKINNAQVVDPETVPKDRVNFGCKVILYDIEKEEEIEYMIVGEDESDPENGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI+SPIAR+L+GK+ GD + V P G + +EI ++ Sbjct: 121 SINSPIARSLLGKQEGDEVEVKVPAGVRRFEIEEIK 156 >gi|331268357|ref|YP_004394849.1| transcription elongation factor GreA [Clostridium botulinum BKT015925] gi|329124907|gb|AEB74852.1| transcription elongation factor GreA [Clostridium botulinum BKT015925] Length = 151 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 93/150 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++ Sbjct: 1 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A VID S + D ++ GA V + + + ++ ++ IVG EAD +S SP+ Sbjct: 61 ENMLRNANVIDESEIPKDVVSVGAIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 ALIGK++GDI++V P G +EIL++ Sbjct: 121 GSALIGKKVGDIVNVPVPDGISKFEILEIR 150 >gi|323490029|ref|ZP_08095250.1| transcription elongation factor GreA [Planococcus donghaensis MPA1U2] gi|323396325|gb|EGA89150.1| transcription elongation factor GreA [Planococcus donghaensis MPA1U2] Length = 158 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 2/157 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + + P+T+ G K++ EL + + +R +++ I AR +GDLSENAEY +AKE Q Sbjct: 1 MANEKQFPMTAAGKQKLEDELDFLKTIKRKEVVERIKIARDFGDLSENAEYDSAKEDQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR++ LE++I A +I+ + ++ D + G TV+ +E GD+++Y IVG EAD G Sbjct: 61 VEGRISTLESMIRNAVIINENELNKDIVRLGTTVTFIEVPDGDQESYTIVGSAEADPLEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+++IG+ +G+ + V PGGE +IL + Sbjct: 121 RISNDSPIAKSMIGRTIGEHVKVLTPGGEMEIKILSI 157 >gi|262276837|ref|ZP_06054630.1| transcription elongation factor [alpha proteobacterium HIMB114] gi|262223940|gb|EEY74399.1| transcription elongation factor [alpha proteobacterium HIMB114] Length = 158 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK P+T G KI+ EL R+ RP+I++AI+EAR++GDL ENAEY AAKE Q LNE Sbjct: 1 MDKQPITLSGLQKIRVELDDRKNNTRPKIVQAIAEARSHGDLKENAEYHAAKEEQGLNER 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I A VID++ + D++ FGAT+++ + + + Y+IVG EADV++GL+ Sbjct: 61 RIKELETTIATANVIDVTKLKKDDKVIFGATITVKDLETDKESKYKIVGKDEADVKNGLL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ R IGK G+ + P GEK +EI V +I Sbjct: 121 FYQSPMGRGFIGKIKGEFAEIKTPSGEKNFEITNVQYI 158 >gi|294011426|ref|YP_003544886.1| transcription elongation factor GreA [Sphingobium japonicum UT26S] gi|292674756|dbj|BAI96274.1| transcription elongation factor GreA [Sphingobium japonicum UT26S] Length = 158 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ ++LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNEQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID T+SGD++ FGATV+L++++ K YQIVG EAD + G++S Sbjct: 63 TIADLEDKLSRAQIIDPRTLSGDKVVFGATVTLLDEDDKPVK-YQIVGQAEADAKVGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158 >gi|90581398|ref|ZP_01237193.1| transcription elongation factor GreB [Vibrio angustum S14] gi|90437375|gb|EAS62571.1| transcription elongation factor GreB [Vibrio angustum S14] Length = 160 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +VID S ++ FGA V + +G+ K ++IVG E ++ +S Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIEN-EAGETKTFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+ D I V P G+K + I ++ + Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEISY 155 >gi|170719896|ref|YP_001747584.1| transcription elongation factor GreA [Pseudomonas putida W619] gi|169757899|gb|ACA71215.1| transcription elongation factor GreA [Pseudomonas putida W619] Length = 160 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + + VID++T+ ++ FG TV L + ++ +YQIVG+ EADV+ G +S Sbjct: 65 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVSYQIVGEDEADVKQGKLSS 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +PIARA+IGKE GD + V P G YEI++V I Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGSVEYEIVEVKHI 160 >gi|152976794|ref|YP_001376311.1| transcription elongation factor GreA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189042233|sp|A7GT58|GREA_BACCN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152025546|gb|ABS23316.1| transcription elongation factor GreA [Bacillus cytotoxicus NVH 391-98] Length = 158 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G +K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKEKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ + + PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVVIQTPGGEMQVEIISVK 158 >gi|85858479|ref|YP_460681.1| transcription elongation factor [Syntrophus aciditrophicus SB] gi|123725222|sp|Q2LR03|GREA_SYNAS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|85721570|gb|ABC76513.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 161 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 108/157 (68%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T GF+ +++EL + P IK I ARA+GDLSENAEY AAKE Q+ G Sbjct: 1 MEKMPITKSGFENLKKELEHLKCVLIPANIKDIEIARAHGDLSENAEYTAAKEKQSFLHG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ ELEN + + VID+ +S DRI FGATV + E ++G + NYQ+VG E+++ +S Sbjct: 61 KLQELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++SPI +ALIGK +GD + V+ PGG + +E++ + +I Sbjct: 121 VTSPIGKALIGKSIGDEVKVHTPGGIRNFEVVDI-YI 156 >gi|296131771|ref|YP_003639018.1| GreA/GreB family elongation factor [Thermincola sp. JR] gi|296030349|gb|ADG81117.1| GreA/GreB family elongation factor [Thermincola potens JR] Length = 158 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K + +T G K++ EL + +R + + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MVEKEVILTLDGLKKLEHELEQLKTVKRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A VID + D ++ G+TV L + GD+ Y IVG EAD + Sbjct: 61 EGRILTLEKMLRNARVIDEGDVHTDVVSIGSTVLLKDLEFGDEIAYTIVGSAEADPSANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+G++ G+II VN P G Y+I+ + Sbjct: 121 ISNESPVGKALLGQKTGEIIEVNVPAGTLKYQIMGIS 157 >gi|170766595|ref|ZP_02901048.1| transcription elongation factor GreB [Escherichia albertii TW07627] gi|170124033|gb|EDS92964.1| transcription elongation factor GreB [Escherichia albertii TW07627] Length = 158 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNAIEYV 156 >gi|152991056|ref|YP_001356778.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2] gi|166200682|sp|A6Q4L2|GREA_NITSB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|151422917|dbj|BAF70421.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2] Length = 163 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K P+T G++KIQ+E + EERP++++ I A+ +GDL ENAEY AAKE + Sbjct: 1 MEQKEPMTQYGYEKIQKEFEALK-EERPKVVEEIERAKEHGDLRENAEYHAAKERLAFID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ EL +++ RA+VID S + D++ FG+TV L++ ++ Y IVG E++ + GL+ Sbjct: 60 ARLTELSDLLARAQVIDPSKLPHDKVGFGSTVKLLDIEEEEEIEYTIVGSTESNPEHGLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S ++P+AR LIGKE GD I+V P GE +E+L+V + Sbjct: 120 SYNTPLARQLIGKEEGDEITVKLPKGEIDFEVLEVYY 156 >gi|148979040|ref|ZP_01815285.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3] gi|145962013|gb|EDK27301.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3] Length = 157 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ EL + RP I AI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGAQQLRDELDRLLK-LRPVISAAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A++ID++ M + +I FG TV+L++ ++ ++ YQIV + EAD+++G + Sbjct: 60 QIRDIEYKLSLAQIIDVTQMENTGKIIFGTTVTLIDVDTDEEYRYQIVSEDEADIKTGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIAR LIGK GD + ++ PGG+K YEI +V +I Sbjct: 120 SVKSPIARGLIGKMEGDEVMISTPGGDKDYEIDKVEYI 157 >gi|330807473|ref|YP_004351935.1| transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375581|gb|AEA66931.1| Transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 160 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ Sbjct: 5 KYPMTVQGAKALEEEHAFLTKVERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARV 64 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+ Sbjct: 65 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKISV 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARALI KE GD++ V PGG YEI++V I Sbjct: 125 GSPIARALIAKEEGDVVVVKTPGGVIEYEIVEVRHI 160 >gi|254038573|ref|ZP_04872629.1| transcription elongation factor greB [Escherichia sp. 1_1_43] gi|300815398|ref|ZP_07095623.1| transcription elongation factor GreB [Escherichia coli MS 107-1] gi|300946852|ref|ZP_07161092.1| transcription elongation factor GreB [Escherichia coli MS 116-1] gi|300956734|ref|ZP_07169005.1| transcription elongation factor GreB [Escherichia coli MS 175-1] gi|301645845|ref|ZP_07245760.1| transcription elongation factor GreB [Escherichia coli MS 146-1] gi|332281953|ref|ZP_08394366.1| transcription elongation factor and transcript cleavage [Shigella sp. D9] gi|606340|gb|AAA58203.1| ORF_o170 [Escherichia coli str. K-12 substr. MG1655] gi|226839079|gb|EEH71102.1| transcription elongation factor greB [Escherichia sp. 1_1_43] gi|300316490|gb|EFJ66274.1| transcription elongation factor GreB [Escherichia coli MS 175-1] gi|300453461|gb|EFK17081.1| transcription elongation factor GreB [Escherichia coli MS 116-1] gi|300532290|gb|EFK53352.1| transcription elongation factor GreB [Escherichia coli MS 107-1] gi|301075923|gb|EFK90729.1| transcription elongation factor GreB [Escherichia coli MS 146-1] gi|324018723|gb|EGB87942.1| transcription elongation factor GreB [Escherichia coli MS 117-3] gi|332104305|gb|EGJ07651.1| transcription elongation factor and transcript cleavage [Shigella sp. D9] Length = 170 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168 >gi|308047929|ref|YP_003911495.1| transcription elongation factor GreB [Ferrimonas balearica DSM 9799] gi|307630119|gb|ADN74421.1| transcription elongation factor GreB [Ferrimonas balearica DSM 9799] Length = 161 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ ++ EL++ +EERPR+ +++SEA A GD SENAEY K+ + Sbjct: 1 MKKADLITKDGWNALEAELKYLWKEERPRVTQSVSEAAALGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V++ ++ FGA V L + GDKK Y++VG E DV+ G + Sbjct: 61 RRVRFLSKRMEVLRVVEPDPRQEGKVYFGAWVELEN-DDGDKKRYRLVGPDEFDVKVGKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK + D + V P G++ + I ++ + Sbjct: 120 SIDSPLARALLGKAVDDEVKVRTPNGDQLFYINEIRY 156 >gi|284008800|emb|CBA75550.1| transcription elongation factor [Arsenophonus nasoniae] Length = 160 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++EL++ +EERP++ +A+SEA A GD SENAEY K+ + Sbjct: 1 MKNNYITREGWNKLEKELKFLWREERPKVTQAVSEAAALGDRSENAEYIYGKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D R+ FGA V + + +G K +++VG E + +S Sbjct: 61 RIRFLSKRLEILKIVDPDPRQEGRVYFGAWVKVQD-ENGVIKVFRLVGADEFNPIKKWIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+SP+AR L+GK++ D ++VN P G TY IL++ + Sbjct: 120 INSPVARELLGKQIDDEVTVNTPNGIITYWILEINY 155 >gi|330958059|gb|EGH58319.1| transcription elongation factor GreA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A VID++T+ ++ FG TV + + ++ YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVVIDVTTIEPTGKVIFGTTVEIANVETDERVTYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|188535334|ref|YP_001909131.1| transcription elongation factor GreB [Erwinia tasmaniensis Et1/99] gi|188030376|emb|CAO98267.1| Transcription elongation factor GreB [Erwinia tasmaniensis Et1/99] Length = 159 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQEGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +V P GE + + + +I Sbjct: 120 IDSPMARALLKKEVGDAATVLTPAGEALWYVNDIRYI 156 >gi|225010165|ref|ZP_03700637.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-3C] gi|225005644|gb|EEG43594.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-3C] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTAEGLKKLKDELNQLRDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A++E I+ A +ID S + ++ +TV L +G + +Y +V + EAD++SG + Sbjct: 61 LKIAKMEGILAGARLIDESQLDNSKVLVLSTVKLKNTQNGMQMSYTLVAESEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK++GDI + P G +EI+ + Sbjct: 121 SVNSPIGQGLLGKKVGDIAEIKVPNGTMGFEIVAIT 156 >gi|110835318|ref|YP_694177.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2] gi|110648429|emb|CAL17905.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2] Length = 171 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ K+ EL++ +++RP I +++ EA A GD SENAEY K+ + R+ Sbjct: 14 YITVEGYHKLNDELQYLWKQKRPEITQSVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D R+ FGA V L ++GD + Y++VG E D G +SI +P Sbjct: 74 LSKRLDDMTVVDRVPEDQSRVFFGAWVELEN-DTGDTETYRLVGPDETDAGRGYISIDAP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K++ D + V P GE+ I ++ + Sbjct: 133 LARALLKKQVDDEVEVRTPAGERCLFINRIWY 164 >gi|59711083|ref|YP_203859.1| transcription elongation factor GreA [Vibrio fischeri ES114] gi|197336313|ref|YP_002155232.1| transcription elongation factor GreA [Vibrio fischeri MJ11] gi|59479184|gb|AAW84971.1| transcription elongation factor [Vibrio fischeri ES114] gi|197317803|gb|ACH67250.1| transcription elongation factor GreA [Vibrio fischeri MJ11] Length = 157 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRGEKLLRDELEVLLK-RRPLISKAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FG TV+L++ N+ ++ YQIV D EA+++ G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDEEVKYQIVADDEANIKEGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKMEGDEVNIQTPGGTKEFEIDAVDYI 157 >gi|312968284|ref|ZP_07782494.1| transcription elongation factor GreB [Escherichia coli 2362-75] gi|312287109|gb|EFR15019.1| transcription elongation factor GreB [Escherichia coli 2362-75] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K + A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVIWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|329924684|ref|ZP_08279699.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] gi|328940518|gb|EGG36840.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] Length = 163 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + ++ YQ+VG EADV + V Sbjct: 66 TRIIILEKTLNNARIVDAKDISSTTVNVGSNVVLNDIEFSERLEYQVVGPAEADVANNKV 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK +GD + V AP G YE+L++ Sbjct: 126 SYESPLGKALMGKAVGDKVHVEAPMGIVKYELLEIK 161 >gi|289522343|ref|ZP_06439197.1| transcription elongation factor GreA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504179|gb|EFD25343.1| transcription elongation factor GreA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 164 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 93/154 (60%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D I +T +G+ K++ EL + E R I + + EAR++GDLSENAEY AAKE Q E R Sbjct: 10 DVILMTREGYQKLRAELIKLRSEGRSEISQQLEEARSFGDLSENAEYHAAKEAQAKLEAR 69 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE +++A+VI+ + ++ G V+L + + + Y IV +E D + +S+ Sbjct: 70 IQQLETQLSKAKVIENDQIDTSQVTLGTKVTLKDLDLNREFTYVIVNSEETDPNNHKISV 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SSP+ +A+IGK +GD + AP G + +IL + Sbjct: 130 SSPVGQAIIGKSVGDEVIARAPRGVRRLKILNIE 163 >gi|261341905|ref|ZP_05969763.1| transcription elongation factor GreB [Enterobacter cancerogenus ATCC 35316] gi|288315808|gb|EFC54746.1| transcription elongation factor GreB [Enterobacter cancerogenus ATCC 35316] Length = 157 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD ++IVG E + +SI SP+ Sbjct: 66 TKCLEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V PGGE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAVVQTPGGEASWYVNEIEYV 156 >gi|42783507|ref|NP_980754.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987] gi|206975946|ref|ZP_03236856.1| transcription elongation factor GreA [Bacillus cereus H3081.97] gi|217961869|ref|YP_002340439.1| transcription elongation factor GreA [Bacillus cereus AH187] gi|222097822|ref|YP_002531879.1| transcription elongation factor grea [Bacillus cereus Q1] gi|81409080|sp|Q730F5|GREA_BACC1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|226737009|sp|B7HQD7|GREA_BACC7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799547|sp|B9IYE4|GREA_BACCQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|42739436|gb|AAS43362.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987] gi|206745698|gb|EDZ57095.1| transcription elongation factor GreA [Bacillus cereus H3081.97] gi|217066147|gb|ACJ80397.1| transcription elongation factor GreA [Bacillus cereus AH187] gi|221241880|gb|ACM14590.1| transcription elongation factor GreA [Bacillus cereus Q1] Length = 158 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158 >gi|294638113|ref|ZP_06716370.1| transcription elongation factor GreB [Edwardsiella tarda ATCC 23685] gi|291088745|gb|EFE21306.1| transcription elongation factor GreB [Edwardsiella tarda ATCC 23685] Length = 158 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ +++D S ++ FGA V + + G K ++IVG E ++ +SI SP+ Sbjct: 66 RKCMSMLKIVDYSPQQDGKVFFGAWVEVEN-DDGVIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ KE+GD +V P GE + I + + Sbjct: 125 ARALLKKEVGDAATVITPSGEALWYINAIDY 155 >gi|219849234|ref|YP_002463667.1| transcription elongation factor GreA [Chloroflexus aggregans DSM 9485] gi|254799553|sp|B8G358|GREA_CHLAD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|219543493|gb|ACL25231.1| transcription elongation factor GreA [Chloroflexus aggregans DSM 9485] Length = 157 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G +++ EL ER +I + I+ A+ GD+SE+ EY+ AK+ Q L Sbjct: 1 MTEKPTYLTREGRARLEAELEHLMTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ EL+++++RAE+ID S + G++V++ ++ G ++ + IVG EA+ + G Sbjct: 61 EGRIRELKHLLSRAEIIDEDQASTGEVRIGSSVTVRFEDDGSEETWTIVGSAEANPRQGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK + + ++V+ P G IL+V Sbjct: 121 ISNESPIGAALLGKRVRNKVTVHTPSGVMKLTILKVR 157 >gi|30264449|ref|NP_846826.1| transcription elongation factor GreA [Bacillus anthracis str. Ames] gi|47529904|ref|YP_021253.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames Ancestor'] gi|47566566|ref|ZP_00237388.1| transcription elongation factor GreA [Bacillus cereus G9241] gi|49187271|ref|YP_030523.1| transcription elongation factor GreA [Bacillus anthracis str. Sterne] gi|49481456|ref|YP_038430.1| transcription elongation factor GreA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141127|ref|YP_085702.1| transcription elongation factor GreA [Bacillus cereus E33L] gi|165872735|ref|ZP_02217363.1| transcription elongation factor GreA [Bacillus anthracis str. A0488] gi|167634587|ref|ZP_02392907.1| transcription elongation factor GreA [Bacillus anthracis str. A0442] gi|167638510|ref|ZP_02396786.1| transcription elongation factor GreA [Bacillus anthracis str. A0193] gi|170687498|ref|ZP_02878715.1| transcription elongation factor GreA [Bacillus anthracis str. A0465] gi|170707370|ref|ZP_02897824.1| transcription elongation factor GreA [Bacillus anthracis str. A0389] gi|177653224|ref|ZP_02935476.1| transcription elongation factor GreA [Bacillus anthracis str. A0174] gi|227817158|ref|YP_002817167.1| transcription elongation factor GreA [Bacillus anthracis str. CDC 684] gi|229602899|ref|YP_002868667.1| transcription elongation factor GreA [Bacillus anthracis str. A0248] gi|38372311|sp|Q81LK9|GREA_BACAN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81394760|sp|Q6HDE6|GREA_BACHK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81686118|sp|Q634G5|GREA_BACCZ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799545|sp|C3P968|GREA_BACAA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799546|sp|C3L5Y5|GREA_BACAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|30259107|gb|AAP28312.1| transcription elongation factor GreA [Bacillus anthracis str. Ames] gi|47505052|gb|AAT33728.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames Ancestor'] gi|47556596|gb|EAL14928.1| transcription elongation factor GreA [Bacillus cereus G9241] gi|49181198|gb|AAT56574.1| transcription elongation factor GreA [Bacillus anthracis str. Sterne] gi|49333012|gb|AAT63658.1| transcription elongation factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974596|gb|AAU16146.1| transcription elongation factor [Bacillus cereus E33L] gi|164711511|gb|EDR17060.1| transcription elongation factor GreA [Bacillus anthracis str. A0488] gi|167513358|gb|EDR88728.1| transcription elongation factor GreA [Bacillus anthracis str. A0193] gi|167530039|gb|EDR92774.1| transcription elongation factor GreA [Bacillus anthracis str. A0442] gi|170127614|gb|EDS96487.1| transcription elongation factor GreA [Bacillus anthracis str. A0389] gi|170668693|gb|EDT19439.1| transcription elongation factor GreA [Bacillus anthracis str. A0465] gi|172081506|gb|EDT66578.1| transcription elongation factor GreA [Bacillus anthracis str. A0174] gi|227003868|gb|ACP13611.1| transcription elongation factor GreA [Bacillus anthracis str. CDC 684] gi|229267307|gb|ACQ48944.1| transcription elongation factor GreA [Bacillus anthracis str. A0248] Length = 158 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158 >gi|259910054|ref|YP_002650410.1| transcription elongation factor GreB [Erwinia pyrifoliae Ep1/96] gi|224965676|emb|CAX57208.1| Transcription elongation factor [Erwinia pyrifoliae Ep1/96] Length = 159 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +V P GE + I + ++ Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 156 >gi|254163334|ref|YP_003046442.1| transcription elongation factor GreB [Escherichia coli B str. REL606] gi|297517135|ref|ZP_06935521.1| transcription elongation factor GreB [Escherichia coli OP50] gi|242378929|emb|CAQ33727.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)] gi|253975235|gb|ACT40906.1| transcription elongation factor GreB [Escherichia coli B str. REL606] gi|253979391|gb|ACT45061.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)] Length = 158 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|307295447|ref|ZP_07575283.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] gi|306878486|gb|EFN09706.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] Length = 158 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE+ ++RA++ID +T+SGD+I FGATV+L++++ YQIVG EAD + G++S Sbjct: 63 TIADLEDKLSRAQIIDPTTLSGDKIVFGATVTLLDED-EKPVKYQIVGQAEADAKVGMIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158 >gi|24053876|gb|AAN44886.1| transcription elongation factor and transcript cleavage factor [Shigella flexneri 2a str. 301] gi|30043573|gb|AAP19293.1| transcription elongation factor and transcript cleavage factor [Shigella flexneri 2a str. 2457T] Length = 170 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 168 >gi|302185422|ref|ZP_07262095.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae 642] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|190150271|ref|YP_001968796.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251385|ref|ZP_07337562.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252570|ref|ZP_07534465.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256998|ref|ZP_07538774.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263610|ref|ZP_07545224.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915402|gb|ACE61654.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649739|gb|EFL79918.1| transcription elongation factor GreA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859975|gb|EFM91993.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864482|gb|EFM96389.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871073|gb|EFN02803.1| Transcription elongation factor greA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLGNAQIIDVTKMTNNGKVIFGATVSLVNADTEEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158 >gi|163787161|ref|ZP_02181608.1| putative transcription elongation factor [Flavobacteriales bacterium ALC-1] gi|159877049|gb|EDP71106.1| putative transcription elongation factor [Flavobacteriales bacterium ALC-1] Length = 157 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K+++EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTAEGLKKLREELSQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +++++E + A VID S + ++ + V + + +G + Y +V + EAD+ SG + Sbjct: 61 MKISKMEETLAGARVIDESQLDTSKVLALSIVKIKNQMNGMEMTYTLVAESEADLASGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +GD + P G ++IL++ Sbjct: 121 SVNSPIGKGLLGKSVGDTAEIQVPNGTMKFDILEIS 156 >gi|295136274|ref|YP_003586950.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87] gi|294984289|gb|ADF54754.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTAEGLKKLRDELNHLKDVERPRASEAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A VID S + ++ + V + +N+G + Y++V EAD+++G + Sbjct: 61 MKIAKLEEVVANARVIDESQLDTSKVLIHSHVKIKNQNNGAEVKYKLVAQSEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI + L+GK++G++ + P G +E+L++ Sbjct: 121 SVDSPIGKGLLGKKVGEVADIAVPSGTMKFEVLEI 155 >gi|153938788|ref|YP_001392874.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|168183600|ref|ZP_02618264.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|170756932|ref|YP_001783160.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|170758438|ref|YP_001788860.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|237796981|ref|YP_002864533.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|229485765|sp|B1IGJ3|GREA_CLOBK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238686691|sp|A7GJB4|GREA_CLOBL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238688748|sp|B1KTC2|GREA_CLOBM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|259647638|sp|C3KVU0|GREA_CLOB6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|152934684|gb|ABS40182.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|169122144|gb|ACA45980.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|169405427|gb|ACA53838.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|182673170|gb|EDT85131.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|229263650|gb|ACQ54683.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|295320851|gb|ADG01229.1| transcription elongation factor GreA [Clostridium botulinum F str. 230613] Length = 160 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|39996303|ref|NP_952254.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA] gi|39983183|gb|AAR34577.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA] gi|298505313|gb|ADI84036.1| transcription elongation factor GreB [Geobacter sulfurreducens KN400] Length = 161 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K++ EL W +EERPR+ + +++A A GD SENAEY K+ + R+ Sbjct: 7 YITPEGAKKLRTELTWLWKEERPRVTQGVADAAAEGDRSENAEYIYGKKRLREIDRRIRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D + D++ FGA V L + GD+ Y++VG E D G +S+ SP Sbjct: 67 LTQRLDALTVVDAPPPATDKVFFGAWVRLENEE-GDEVVYRVVGPDETDAAKGHISLDSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + ++L+G+ GD + V P GE + +L+V + Sbjct: 126 MGKSLLGRREGDEVHVRRPAGEAVFTVLEVGY 157 >gi|23099457|ref|NP_692923.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831] gi|38372370|sp|Q8EPT6|GREA_OCEIH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|22777686|dbj|BAC13958.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T +G DK+++EL + + + R +++ I AR +GDLSEN+EY AAK+ Q E R+ Sbjct: 7 YYMTQEGKDKLEEELHYLKTDRRQEVVERIKVARDFGDLSENSEYDAAKDEQAFVEQRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++E +I A +I+ + + ++ G +VS VE GD++ Y IVG EAD G +S S Sbjct: 67 QVEKMIRNAVIIENDNDNPNIVSLGKSVSFVELPDGDEETYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+A +L+GKE+G+ ++V PGG+ I V Sbjct: 127 PMATSLLGKEIGEEVTVTTPGGDIDVRITNVE 158 >gi|296105101|ref|YP_003615247.1| transcription elongation factor GreB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059560|gb|ADF64298.1| transcription elongation factor GreB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 157 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + G+ ++IVG E + +SI SP+ Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGNTLRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAVVQTPAGEASWYVNEITYV 156 >gi|66047417|ref|YP_237258.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae B728a] gi|63258124|gb|AAY39220.1| Prokaryotic transcription elongation factor GreA [Pseudomonas syringae pv. syringae B728a] gi|330969641|gb|EGH69707.1| transcription elongation factor GreA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|300857282|ref|YP_003782266.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300437397|gb|ADK17164.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 151 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 88/150 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + +R I++ I A ++GDLSEN+EY +AK Q EGR+ +L Sbjct: 1 MTYEGITKLEDELEYLKTAKRREIMEKIKVALSFGDLSENSEYDSAKNEQAFVEGRIVQL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN++ A ++D + + G+ V + + + ++ Y IVG EAD + +S SP+ Sbjct: 61 ENMLKNATIVDEEEIPPGVVGIGSIVKVRDYDFNEEVEYLIVGSAEADPINNKISNESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 + L+GK+ GDI+ V P G YEIL + Sbjct: 121 GKGLVGKKAGDIVEVQVPDGVSKYEILSIR 150 >gi|74313909|ref|YP_312328.1| transcription elongation factor GreB [Shigella sonnei Ss046] gi|73857386|gb|AAZ90093.1| Transcription elongation factor [Shigella sonnei Ss046] gi|323164968|gb|EFZ50759.1| transcription elongation factor GreB [Shigella sonnei 53G] Length = 158 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + ++++ S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCMENLKIVNYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 >gi|168180989|ref|ZP_02615653.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|226950976|ref|YP_002806067.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] gi|254799555|sp|C1FNC6|GREA_CLOBJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|182668066|gb|EDT80045.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|226841785|gb|ACO84451.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] Length = 160 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 4 AKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|229175053|ref|ZP_04302571.1| Transcription elongation factor greA [Bacillus cereus MM3] gi|228608421|gb|EEK65725.1| Transcription elongation factor greA [Bacillus cereus MM3] Length = 161 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161 >gi|227530498|ref|ZP_03960547.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540] gi|227349603|gb|EEJ39894.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540] Length = 158 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 102/158 (64%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MAEEKTFPMTLEGKQKLEQELEDLKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR++++EN++ AE+ID + D ++ G V++ E + ++YQIVG+ E+D +G Sbjct: 61 VEGRISQIENMLQYAEIIDNDDVDKDEVSMGRKVTIKELPDEEPESYQIVGESESDPFNG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+A+ L+G ++G+ + + P G +IL V Sbjct: 121 KISNESPMAKGLLGHKVGEEVEIEIPNGTMKVKILSVE 158 >gi|309794676|ref|ZP_07689098.1| transcription elongation factor GreB [Escherichia coli MS 145-7] gi|308121726|gb|EFO58988.1| transcription elongation factor GreB [Escherichia coli MS 145-7] Length = 170 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 168 >gi|65321747|ref|ZP_00394706.1| COG0782: Transcription elongation factor [Bacillus anthracis str. A2012] gi|228917013|ref|ZP_04080573.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948093|ref|ZP_04110377.1| Transcription elongation factor greA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093450|ref|ZP_04224553.1| Transcription elongation factor greA [Bacillus cereus Rock3-42] gi|228689921|gb|EEL43725.1| Transcription elongation factor greA [Bacillus cereus Rock3-42] gi|228811451|gb|EEM57788.1| Transcription elongation factor greA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842620|gb|EEM87708.1| Transcription elongation factor greA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 161 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161 >gi|330718836|ref|ZP_08313436.1| transcription elongation factor GreA [Leuconostoc fallax KCTC 3537] Length = 159 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G ++QEL +RP I K I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKTFPMTLEGKTSLEQELDNLIAVQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ + +I AE+ID++ + D ++ G TV+ E + + Y IVG EAD SG Sbjct: 61 VEGRIQTIRKMIENAEIIDVADTASDEVSLGKTVTFKELPDEEAETYTIVGSVEADPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S SP+A ALI ++GD + V P G EIL V Sbjct: 121 KISNESPMANALINHKVGDTVDVPLPNGINIKVEILSVK 159 >gi|49081530|gb|AAT50165.1| PA2859 [synthetic construct] Length = 169 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V P GEK + ++++ + Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164 >gi|91212881|ref|YP_542867.1| transcription elongation factor GreB [Escherichia coli UTI89] gi|227883540|ref|ZP_04001345.1| transcription elongation factor GreB [Escherichia coli 83972] gi|237703136|ref|ZP_04533617.1| transcription elongation factor and transcript cleavage [Escherichia sp. 3_2_53FAA] gi|300822797|ref|ZP_07102933.1| transcription elongation factor GreB [Escherichia coli MS 119-7] gi|300898907|ref|ZP_07117206.1| transcription elongation factor GreB [Escherichia coli MS 198-1] gi|300926905|ref|ZP_07142670.1| transcription elongation factor GreB [Escherichia coli MS 182-1] gi|300937297|ref|ZP_07152138.1| transcription elongation factor GreB [Escherichia coli MS 21-1] gi|300985400|ref|ZP_07177423.1| transcription elongation factor GreB [Escherichia coli MS 45-1] gi|301019577|ref|ZP_07183737.1| transcription elongation factor GreB [Escherichia coli MS 69-1] gi|301329711|ref|ZP_07222460.1| transcription elongation factor GreB [Escherichia coli MS 78-1] gi|331649204|ref|ZP_08350290.1| transcription elongation factor GreB [Escherichia coli M605] gi|331654983|ref|ZP_08355982.1| transcription elongation factor GreB [Escherichia coli M718] gi|331674894|ref|ZP_08375651.1| transcription elongation factor GreB [Escherichia coli TA280] gi|331679470|ref|ZP_08380140.1| transcription elongation factor GreB [Escherichia coli H591] gi|12518036|gb|AAG58507.1|AE005563_1 transcription elongation factor and transcript cleavage [Escherichia coli O157:H7 str. EDL933] gi|26110436|gb|AAN82621.1|AE016768_39 Transcription elongation factor greB [Escherichia coli CFT073] gi|13363722|dbj|BAB37671.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. Sakai] gi|91074455|gb|ABE09336.1| transcription elongation factor and transcript cleavage [Escherichia coli UTI89] gi|209756508|gb|ACI76566.1| transcription elongation factor GreB [Escherichia coli] gi|209756510|gb|ACI76567.1| transcription elongation factor GreB [Escherichia coli] gi|209756512|gb|ACI76568.1| transcription elongation factor GreB [Escherichia coli] gi|209756514|gb|ACI76569.1| transcription elongation factor GreB [Escherichia coli] gi|209756516|gb|ACI76570.1| transcription elongation factor GreB [Escherichia coli] gi|226902400|gb|EEH88659.1| transcription elongation factor and transcript cleavage [Escherichia sp. 3_2_53FAA] gi|227839419|gb|EEJ49885.1| transcription elongation factor GreB [Escherichia coli 83972] gi|300357446|gb|EFJ73316.1| transcription elongation factor GreB [Escherichia coli MS 198-1] gi|300399165|gb|EFJ82703.1| transcription elongation factor GreB [Escherichia coli MS 69-1] gi|300408083|gb|EFJ91621.1| transcription elongation factor GreB [Escherichia coli MS 45-1] gi|300417088|gb|EFK00399.1| transcription elongation factor GreB [Escherichia coli MS 182-1] gi|300457620|gb|EFK21113.1| transcription elongation factor GreB [Escherichia coli MS 21-1] gi|300524563|gb|EFK45632.1| transcription elongation factor GreB [Escherichia coli MS 119-7] gi|300844223|gb|EFK71983.1| transcription elongation factor GreB [Escherichia coli MS 78-1] gi|315291670|gb|EFU51026.1| transcription elongation factor GreB [Escherichia coli MS 153-1] gi|315295897|gb|EFU55210.1| transcription elongation factor GreB [Escherichia coli MS 16-3] gi|325498948|gb|EGC96807.1| transcription elongation factor GreB [Escherichia fergusonii ECD227] gi|331041702|gb|EGI13846.1| transcription elongation factor GreB [Escherichia coli M605] gi|331046998|gb|EGI19076.1| transcription elongation factor GreB [Escherichia coli M718] gi|331067803|gb|EGI39201.1| transcription elongation factor GreB [Escherichia coli TA280] gi|331072642|gb|EGI43967.1| transcription elongation factor GreB [Escherichia coli H591] Length = 170 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168 >gi|315644113|ref|ZP_07897283.1| transcription elongation factor GreA [Paenibacillus vortex V453] gi|315280488|gb|EFU43777.1| transcription elongation factor GreA [Paenibacillus vortex V453] Length = 163 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 94/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE + A ++D +S + G+ V L + +K YQ+VG EADV + V Sbjct: 66 TRIIILEKTLNSARIVDSKQVSSTTVNVGSNVVLNDIEFAEKLEYQVVGPAEADVLNNKV 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK +GD ++V+AP G YE+L++ Sbjct: 126 SYESPLGKALMGKAVGDQVNVDAPMGIVKYELLEIK 161 >gi|163846801|ref|YP_001634845.1| transcription elongation factor GreA [Chloroflexus aurantiacus J-10-fl] gi|222524620|ref|YP_002569091.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl] gi|229485761|sp|A9WK05|GREA_CHLAA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799554|sp|B9LBX1|GREA_CHLSY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|163668090|gb|ABY34456.1| transcription elongation factor GreA [Chloroflexus aurantiacus J-10-fl] gi|222448499|gb|ACM52765.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl] Length = 157 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G +++ EL + ER +I + I+ A+ GD+SE+ EY+ AK+ Q L Sbjct: 1 MTEKPTYLTREGRARLEAELEYLTTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ EL+++++RAEVID S + G++V++ ++ G ++ + IVG EA+ + G Sbjct: 61 EGRIRELKHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK + ++V+ P G IL+V Sbjct: 121 ISNESPLGAALLGKRARNKVTVHTPSGVMKLTILKVR 157 >gi|90412476|ref|ZP_01220479.1| transcription elongation factor GreA [Photobacterium profundum 3TCK] gi|90326513|gb|EAS42919.1| transcription elongation factor GreA [Photobacterium profundum 3TCK] Length = 157 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQTLREELEVLLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ ++VID++ M + ++ FG TV L++ N+ D+ Y IVGD EAD++ L+ Sbjct: 60 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDEVMYCIVGDDEADIKKNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG K +EI QV +I Sbjct: 120 SVNSPIARGLIGKLEGDEVSIFTPGGVKEFEIEQVQYI 157 >gi|160932785|ref|ZP_02080174.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753] gi|156867859|gb|EDO61231.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753] Length = 158 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 90/155 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +G ++QEL + + E R I + I A ++GDLSEN+EY AK Q + E Sbjct: 3 AKQVLLTDEGLHNLEQELEFLKTERRKEIAEKIKVALSFGDLSENSEYDEAKNDQAMVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+A++E+++ ++ID ++ + I G+ V + + + YQIVG EAD +G +S Sbjct: 63 RIADIESMLKNVKIIDQDELTTELIHIGSKVQVKDVEFDEVCTYQIVGSSEADPSNGRIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ + L+G ++G+ + + P G YEIL + Sbjct: 123 DESPVGKGLLGHKVGETVEIETPAGVMQYEILGIS 157 >gi|153952824|ref|YP_001393589.1| transcription elongation factor GreA [Clostridium kluyveri DSM 555] gi|219853489|ref|YP_002470611.1| hypothetical protein CKR_0146 [Clostridium kluyveri NBRC 12016] gi|229485766|sp|A5N4L0|GREA_CLOK5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799556|sp|B9DY72|GREA_CLOK1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146345705|gb|EDK32241.1| GreA1 [Clostridium kluyveri DSM 555] gi|219567213|dbj|BAH05197.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 159 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 89/154 (57%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T +G K++ EL + + +R I + I A ++GDLSEN+EY +AK Q EGR Sbjct: 5 KKYVMTYEGIKKLENELEYLKTVKRKEITEKIKVALSFGDLSENSEYDSAKNEQAFVEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN++ A ++D + D + G+ V + + + ++ Y IVG EAD + +S Sbjct: 65 IVQLENMLKNASMVDEDEVPLDIVGIGSIVKVKDYDLDEEVEYLIVGSAEADPINNKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ + L+GK+ GD+I + P G Y+IL + Sbjct: 125 ESPVGKGLVGKKPGDVIEIQVPDGVSKYKILNIR 158 >gi|322807846|emb|CBZ05421.1| transcription elongation factor GreA [Clostridium botulinum H04402 065] Length = 160 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGISKYEILEV 157 >gi|261403947|ref|YP_003240188.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|329925508|ref|ZP_08280382.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] gi|261280410|gb|ACX62381.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10] gi|328939791|gb|EGG36131.1| transcription elongation factor GreA [Paenibacillus sp. HGF5] Length = 158 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ ++ D + G TV + + GD Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A+IGK+ G ++ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157 >gi|167854513|ref|ZP_02477294.1| transcription elongation factor GreB [Haemophilus parasuis 29755] gi|167854268|gb|EDS25501.1| transcription elongation factor GreB [Haemophilus parasuis 29755] Length = 162 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ +EERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQALDQELKYLWKEERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L + G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPSQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I V P G+ I ++ + Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPAGKVMLYINKIWY 156 >gi|195940962|ref|ZP_03086344.1| transcription elongation factor GreB [Escherichia coli O157:H7 str. EC4024] Length = 157 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + G ++IVG E + +SI SP+ Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGQTLRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAVVQTPAGEASWYVNEIEYV 156 >gi|319795595|ref|YP_004157235.1| transcription elongation factor greb [Variovorax paradoxus EPS] gi|315598058|gb|ADU39124.1| transcription elongation factor GreB [Variovorax paradoxus EPS] Length = 192 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ Sbjct: 30 KNYITPEGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV D S G D+I FGATV V++ D++ I+G EAD VS Sbjct: 90 RFLTKRLEIAEVTDPSVHHGSDQIFFGATVRYVDETGDDERTITILGIDEADSAQSQVSW 149 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ GD++ + PGG EIL V + Sbjct: 150 ISPIARALLKSREGDVVKLVTPGGAHEVEILSVSY 184 >gi|312128202|ref|YP_003993076.1| grea/greb family elongation factor [Caldicellulosiruptor hydrothermalis 108] gi|312793713|ref|YP_004026636.1| transcription elongation factor grea [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877911|ref|ZP_07737855.1| transcription elongation factor GreA [Caldicellulosiruptor lactoaceticus 6A] gi|311778221|gb|ADQ07707.1| GreA/GreB family elongation factor [Caldicellulosiruptor hydrothermalis 108] gi|311795303|gb|EFR11688.1| transcription elongation factor GreA [Caldicellulosiruptor lactoaceticus 6A] gi|312180853|gb|ADQ41023.1| transcription elongation factor GreA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 162 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 93/153 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD++ V+ P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEIS 161 >gi|15598055|ref|NP_251549.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAO1] gi|107102408|ref|ZP_01366326.1| hypothetical protein PaerPA_01003470 [Pseudomonas aeruginosa PACS2] gi|116050862|ref|YP_790315.1| transcription elongation factor GreB [Pseudomonas aeruginosa UCBPP-PA14] gi|218890942|ref|YP_002439808.1| transcription elongation factor GreB [Pseudomonas aeruginosa LESB58] gi|254235846|ref|ZP_04929169.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719] gi|296388654|ref|ZP_06878129.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAb1] gi|313108005|ref|ZP_07794172.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016] gi|25453010|sp|Q9HZY5|GREB_PSEAE RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|9948947|gb|AAG06247.1|AE004712_7 transcription elongation factor GreB [Pseudomonas aeruginosa PAO1] gi|115586083|gb|ABJ12098.1| transcription elongation factor GreB [Pseudomonas aeruginosa UCBPP-PA14] gi|126167777|gb|EAZ53288.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719] gi|218771167|emb|CAW26932.1| transcription elongation factor GreB [Pseudomonas aeruginosa LESB58] gi|310880674|gb|EFQ39268.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016] Length = 168 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V P GEK + ++++ + Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164 >gi|15613839|ref|NP_242142.1| transcription elongation factor GreA [Bacillus halodurans C-125] gi|20138372|sp|Q9KDD7|GREA_BACHD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|10173892|dbj|BAB04995.1| transcriptional elongation factor [Bacillus halodurans C-125] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T +G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAEEKKHYMTLEGKKKLEEELEYLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR++++E +I AE+I+ S + ++ G TV VE G+++ Y IVG E+D G Sbjct: 61 VEGRISQIEKMIRNAEIIEESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+A++L+G + D++ VN PGGE +IL++ Sbjct: 121 KISNDSPMAQSLLGHTIDDVVIVNTPGGEMEVKILEIR 158 >gi|71733247|ref|YP_276321.1| transcription elongation factor GreA [Pseudomonas syringae pv. phaseolicola 1448A] gi|237798553|ref|ZP_04587014.1| transcription elongation factor GreA [Pseudomonas syringae pv. oryzae str. 1_6] gi|257482271|ref|ZP_05636312.1| transcription elongation factor GreA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624592|ref|ZP_06457546.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646951|ref|ZP_06478294.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. 2250] gi|298488446|ref|ZP_07006477.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71553800|gb|AAZ33011.1| transcription elongation factor GreA [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157071|gb|EFH98160.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322538|gb|EFW78631.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. B076] gi|320329993|gb|EFW85980.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. race 4] gi|330868236|gb|EGH02945.1| transcription elongation factor GreA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875233|gb|EGH09382.1| transcription elongation factor GreA [Pseudomonas syringae pv. glycinea str. race 4] gi|330888668|gb|EGH21329.1| transcription elongation factor GreA [Pseudomonas syringae pv. mori str. 301020] gi|330963965|gb|EGH64225.1| transcription elongation factor GreA [Pseudomonas syringae pv. actinidiae str. M302091] gi|330987045|gb|EGH85148.1| transcription elongation factor GreA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011488|gb|EGH91544.1| transcription elongation factor GreA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331021406|gb|EGI01463.1| transcription elongation factor GreA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|238921494|ref|YP_002935009.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146] gi|238871063|gb|ACR70774.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ +++D + ++ FGA V + GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKCMSILKIVDYAPQQNGKVFFGAWVEVEN-ERGDIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD +V P G+ + + + ++ Sbjct: 125 ARALLKKEVGDAATVATPQGDAEWYVNAINYV 156 >gi|325280567|ref|YP_004253109.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM 20712] gi|324312376|gb|ADY32929.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM 20712] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ VT +G K+Q+EL Q ERP+I KAI EA GD+SENAEY AAK+ Q L Sbjct: 1 MSNKVSYVTKEGLKKLQEELERLQNVERPKISKAIGEAIEKGDISENAEYDAAKDAQGLL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E ++A+L++ I VID S + ++ V++ +G Y +V + EA+ + G Sbjct: 61 EAKIAQLKDTIATCRVIDESQIDTSKVQMLNKVTIKNTKTGATMTYTLVSETEANFKEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SI +PIA+AL+GK+LGD + V P GE +EI+ + Sbjct: 121 LSIHTPIAQALVGKKLGDKVMVKVPAGEMEFEIMDIS 157 >gi|268316677|ref|YP_003290396.1| transcription elongation factor GreA [Rhodothermus marinus DSM 4252] gi|262334211|gb|ACY48008.1| transcription elongation factor GreA [Rhodothermus marinus DSM 4252] Length = 159 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + K+++EL + +ER RI KAI+EAR +GDLSENAEY AAKE Q E R+A Sbjct: 7 VYLTREALQKLKEELHELKTKERARIAKAIAEARGHGDLSENAEYDAAKEAQGRLEARIA 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ++E I A ++D + + + + V + +G ++ + +V QE ++ G +S++S Sbjct: 67 QIEQTIANARIVDENKIDTSKAYIFSKVRVKNLQTGAEQVFTLVSPQEVNLNEGKISVNS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PI + L+G+ +GD++ V P G+ +IL++ Sbjct: 127 PIGKGLLGRSVGDVVEVKVPAGKVKLQILEIS 158 >gi|325285915|ref|YP_004261705.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489] gi|324321369|gb|ADY28834.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSNVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++++LE I+ A +ID S + ++ +TV L +++G + Y +V + EAD+++G + Sbjct: 61 LKISKLEEIVAGARIIDESQLDTSKVLVLSTVKLKNQSNGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +GD + P G+ IL++ Sbjct: 121 SVNSPIGKGLLGKSVGDEAEIAVPNGKIKLTILEIT 156 >gi|330895316|gb|EGH27654.1| transcription elongation factor GreA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVFVKTPSGVIEYEIVEVRHI 158 >gi|83644091|ref|YP_432526.1| transcription elongation factor [Hahella chejuensis KCTC 2396] gi|83632134|gb|ABC28101.1| Transcription elongation factor [Hahella chejuensis KCTC 2396] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T G +++EL + +RPR+I AI+EAR +GDL ENAEY AA+E Q+ EG Sbjct: 1 MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHAAREQQSFIEG 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E+ ++ +++ID++++ + ++ FG TV+++ ++ D +YQIVGD EAD++ G + Sbjct: 61 RIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTDDVSSYQIVGDDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIARALIGK +GD++ V P G YEI V + Sbjct: 121 SVSSPIARALIGKTVGDVVVVQVPSGMVEYEIDGVQHL 158 >gi|311696372|gb|ADP99245.1| transcription elongation factor GreB [marine bacterium HP15] Length = 171 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+ + R+ Sbjct: 14 YITPEGERALRDELQYLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDRRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D D++ FGA V++ ++ GD++ Y++VG E D+ G +SI+SP Sbjct: 74 LGKRLEELTVVDRLPDDRDKVFFGAWVTVEDEE-GDEQTYRLVGADEFDLNKGYLSINSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALIGK L D +SV P G K+ ++ + + Sbjct: 133 LARALIGKRLDDEVSVRTPEGWKSVFVVGIRY 164 >gi|304405775|ref|ZP_07387433.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] gi|304345018|gb|EFM10854.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MGDKEVILTQDGLRKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + + ++ G+TVS+ + GD +Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTETVSIGSTVSVEDLEFGDTVDYTIVGTAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK++G + V+ P G Y+IL++ Sbjct: 121 ISNESPVGKAILGKKVGATVEVSVPAGVIQYKILEIK 157 >gi|125975378|ref|YP_001039288.1| transcription elongation factor GreA [Clostridium thermocellum ATCC 27405] gi|256005475|ref|ZP_05430437.1| transcription elongation factor GreA [Clostridium thermocellum DSM 2360] gi|281419339|ref|ZP_06250354.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|166200659|sp|A3DJG6|GREA_CLOTH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|125715603|gb|ABN54095.1| transcription elongation factor GreA [Clostridium thermocellum ATCC 27405] gi|255990530|gb|EEU00650.1| transcription elongation factor GreA [Clostridium thermocellum DSM 2360] gi|281406959|gb|EFB37222.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|316939493|gb|ADU73527.1| transcription elongation factor GreA [Clostridium thermocellum DSM 1313] Length = 159 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 93/154 (60%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T +G K++QEL + +R + + I +A ++GD+SEN+EY AK Q EGR Sbjct: 5 KEVVLTYEGLQKLEQELENLKTVKRREVAERIKQALSFGDISENSEYDEAKNEQAYIEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN++ A+VID + D ++ G+ V +++ ++ Y IVG EAD +S Sbjct: 65 IFQLENMLKNAKVIDEEDIQTDVVSIGSKVKVLDMEFDEEVEYYIVGSTEADPSQYKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG ++GDI+ V P G ++IL++ Sbjct: 125 ESPVGKALIGGKIGDIVEVTVPDGVIKFKILEIR 158 >gi|300173857|ref|YP_003773023.1| transcription elongation factor greA [Leuconostoc gasicomitatum LMG 18811] gi|299888236|emb|CBL92204.1| Transcription elongation factor greA [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G +K+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKVFPMTAEGRNKLQAELEDLITNQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I AE+ID + + D ++ G TV+ E + D + Y IVG E+D +G Sbjct: 61 VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPNEDAETYAIVGSTESDPVAG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S S +A AL+GK++GD ++V P G+ + EIL+V Sbjct: 121 KISNESAMAVALLGKKVGDKVNVPLPSGDNISVEILKVE 159 >gi|33152720|ref|NP_874073.1| transcription elongation factor GreA [Haemophilus ducreyi 35000HP] gi|71152089|sp|Q7VL00|GREA_HAEDU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|33148944|gb|AAP96462.1| transcription elongation factor [Haemophilus ducreyi 35000HP] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E + A+VID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+ Sbjct: 61 RIQEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR L+GK + D +S+ PGG+ ++I+ V + Sbjct: 121 SVNSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY 157 >gi|293606024|ref|ZP_06688389.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC 43553] gi|292815479|gb|EFF74595.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC 43553] Length = 183 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 29 KNYMTPEGYERLRAELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + D++ FGATV + +G++ IVG EA+ +G +S Sbjct: 89 RFLTKRLDIAEVVDPALQPNRDQVFFGATVRYSD-KAGEEHTVTIVGVDEAEPLAGKISW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI GD + + PGG + +IL+V + Sbjct: 148 ISPVARALIKAREGDTVVLRTPGGIEELDILEVRY 182 >gi|56415418|ref|YP_152493.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364348|ref|YP_002143985.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129675|gb|AAV79181.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095825|emb|CAR61398.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYETLKQELNYLWHEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156 >gi|327402704|ref|YP_004343542.1| transcription elongation factor GreA [Fluviicola taffensis DSM 16823] gi|327318212|gb|AEA42704.1| transcription elongation factor GreA [Fluviicola taffensis DSM 16823] Length = 157 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 96/156 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D T +G K++ EL + +RPRI + I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSDFAYYTEEGLKKLKDELHEMKTVQRPRISEQIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++++++ ++++A +ID S M ++ + V + N+G + Y IV + EAD++ + Sbjct: 61 MKISKMDALLSKARIIDNSIMDNSKVLILSCVKIKNVNNGMEMEYTIVAESEADLKLKKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI SPI + L+GK++GD+ V P G +E++ + Sbjct: 121 SIDSPIGKGLLGKKVGDVADVQTPNGIVKFEVMDIT 156 >gi|289676014|ref|ZP_06496904.1| transcription elongation factor GreA [Pseudomonas syringae pv. syringae FF5] gi|330937936|gb|EGH41723.1| transcription elongation factor GreA [Pseudomonas syringae pv. pisi str. 1704B] gi|330981080|gb|EGH79183.1| transcription elongation factor GreA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 158 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIVEVRHI 158 >gi|42523662|ref|NP_969042.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus HD100] gi|39575869|emb|CAE80035.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus HD100] Length = 162 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 77/155 (49%), Positives = 108/155 (69%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK+P+T +G + EL+ EERP +I AI EARA GD+SENAEY+AAKE Q + EGR Sbjct: 7 DKLPMTIRGKALLDAELKKLLLEERPSVILAIEEARAQGDISENAEYEAAKERQAMIEGR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE++ + A+VID + + DRI FGA V +V+ S + YQIVG EADV+ G++SI Sbjct: 67 IAEIQGKLAGADVIDTAQIKADRIVFGAFVKIVDTESEETFQYQIVGVDEADVKKGMISI 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALIGK+ D ++V +P G+K +EI+ + Sbjct: 127 LSPLARALIGKKDSDTVTVQSPKGDKEFEIISFEY 161 >gi|199597193|ref|ZP_03210625.1| Transcription elongation factor [Lactobacillus rhamnosus HN001] gi|229552515|ref|ZP_04441240.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|258508708|ref|YP_003171459.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] gi|258539888|ref|YP_003174387.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc 705] gi|199591997|gb|EDZ00072.1| Transcription elongation factor [Lactobacillus rhamnosus HN001] gi|229314067|gb|EEN80040.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|257148635|emb|CAR87608.1| Transcription elongation factor greA [Lactobacillus rhamnosus GG] gi|257151564|emb|CAR90536.1| Transcription elongation factor greA [Lactobacillus rhamnosus Lc 705] gi|259650015|dbj|BAI42177.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] Length = 156 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK P+T++G K++ EL + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ Sbjct: 1 MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++ ++ AE+ID ++ + ++ G V+ + GD++ Y+IVG EAD +G Sbjct: 61 ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTF--EEDGDEETYEIVGAAEADAFNGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ LIG+++GD +++N PGGE T +I +V Sbjct: 119 ISNESPIAQGLIGRKVGDQVTINTPGGEMTVKITKVE 155 >gi|154149289|ref|YP_001406861.1| transcription elongation factor GreA [Campylobacter hominis ATCC BAA-381] gi|166200653|sp|A7I2X0|GREA_CAMHC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|153805298|gb|ABS52305.1| transcription elongation factor GreA [Campylobacter hominis ATCC BAA-381] Length = 162 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 104/156 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + P+T G++KI EL+ + +RP I++ I AR++GDL EN+EY AA+E Q E Sbjct: 1 MQSEPMTLYGYEKITAELKDLKMVQRPNIVRDIDIARSHGDLKENSEYHAAREKQAFIEN 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+ +I++RA+VID ST D++ FG+TV++++ + +K Y IVG E+D+ G ++ Sbjct: 61 RIAEISDIVSRAKVIDPSTYEHDKVKFGSTVTIMDVETELEKTYVIVGISESDISKGYIN 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I++P+AR L+GK GD + +N P G EI+ V + Sbjct: 121 INTPLARQLLGKVEGDDVILNLPNGVSEIEIVSVEY 156 >gi|257459030|ref|ZP_05624149.1| transcription elongation factor GreA [Campylobacter gracilis RM3268] gi|257443415|gb|EEV18539.1| transcription elongation factor GreA [Campylobacter gracilis RM3268] Length = 163 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 100/156 (64%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + P+T G++KI EL+ Q + P I++ I AR +GDL ENAEY AA+E Q Sbjct: 1 MTTEPMTLYGYEKITSELKELQSVKLPHIVQQIDIARGHGDLKENAEYHAAREEQAFLLS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +II+R+++ID ST DR+ FG+TV+ ++ + ++ Y IVG EAD+ L++ Sbjct: 61 RIAELSDIISRSKIIDPSTYEHDRVKFGSTVTFMDVETEREETYVIVGLSEADISRKLIN 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I++P+AR L+GK GD + + P G + EIL V + Sbjct: 121 INTPLARQLLGKAEGDEVVLQLPSGTRDVEILSVEY 156 >gi|78777731|ref|YP_394046.1| transcription elongation factor GreA [Sulfurimonas denitrificans DSM 1251] gi|78498271|gb|ABB44811.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] Length = 165 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 + KI P+T G++K+Q E++ ++ +RPR++K I EA +GDL ENAEY AAKE Q + + Sbjct: 1 MQKIEPMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYHAAKEQQKILD 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I ++++D + + +++FG+TV + + S + Y IVG E++ GL+ Sbjct: 61 NRLAELAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISEIEYTYTIVGGCESNPDIGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S +SP+A+ L+G+E GD + V P G+K +EI++V + Sbjct: 121 SFNSPLAKQLLGREEGDDVKVQLPNGQKEFEIIEVTY 157 >gi|187777498|ref|ZP_02993971.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC 15579] gi|187774426|gb|EDU38228.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC 15579] Length = 160 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFAEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK++GDII V P G YEIL+V Sbjct: 124 NESPVGNGLIGKKVGDIIEVTVPDGVSKYEILEV 157 >gi|89076063|ref|ZP_01162423.1| transcription elongation factor GreB [Photobacterium sp. SKA34] gi|89048215|gb|EAR53797.1| transcription elongation factor GreB [Photobacterium sp. SKA34] Length = 160 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +VID S +I FGA V + +G+ K ++IVG E ++ +S Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKIFFGAWVEIEN-EAGETKTFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+ D I V P G+K + I ++ + Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEIRY 155 >gi|194336836|ref|YP_002018630.1| transcription elongation factor GreA [Pelodictyon phaeoclathratiforme BU-1] gi|238693368|sp|B4SBF9|GREA_PELPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|194309313|gb|ACF44013.1| transcription elongation factor GreA [Pelodictyon phaeoclathratiforme BU-1] Length = 159 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +TS G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MTDRIYLTSDGYNRLKEELYVLVHQTRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119 R+A+LEN + A ++D + D++ +V L ++ + Y +V +EAD SG Sbjct: 61 ARIADLENKLASATILDPKQIKTDKVYILTSVKLKNLDTPDEIIEYTLVSSEEADTDSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK +G+ + + P GE YEIL++ Sbjct: 121 ISVRSPVGRALIGKAVGEKVQIVVPKGELHYEILEI 156 >gi|229592647|ref|YP_002874766.1| transcription elongation factor GreA [Pseudomonas fluorescens SBW25] gi|229364513|emb|CAY52367.1| transcription elongation factor, cleaves 3' nucleotide of paused mRNA [Pseudomonas fluorescens SBW25] Length = 158 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGAKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A +ID++T+ ++ FG TV + + + Y IVG+ EAD + G + Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+ARALI KE GD+++V PGG YEI++V + Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158 >gi|315644403|ref|ZP_07897543.1| transcription elongation factor GreA [Paenibacillus vortex V453] gi|315280280|gb|EFU43572.1| transcription elongation factor GreA [Paenibacillus vortex V453] Length = 158 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ ++ D I G TV + + GD Y IVG E+D + Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDIIGVGNTVLVEDLEFGDTMEYTIVGSAESDPLNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A+IGK+ G ++ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157 >gi|325106003|ref|YP_004275657.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145] gi|324974851|gb|ADY53835.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145] Length = 157 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T +G + ++QEL++ + E R +I AI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MTEIAYFTKEGLENLKQELQYLKTEGRAKIANAIAEARDKGDLSENAEYDAAKEAQALHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LEN + A +ID S + ++ + V + +G YQ+V + EAD++SG + Sbjct: 61 TKIAKLENTLANARLIDESKIDTTKVLALSIVKIKNVKNGATMTYQLVAENEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPIA+ L+GK +GD + P G+ +EIL + Sbjct: 121 SVKSPIAQGLLGKSVGDKAEITVPAGKMEFEILDIS 156 >gi|324009407|gb|EGB78626.1| transcription elongation factor GreB [Escherichia coli MS 57-2] Length = 170 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P G ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGGASWYVNAIEYV 168 >gi|301302284|ref|ZP_07208416.1| transcription elongation factor GreB [Escherichia coli MS 124-1] gi|300842447|gb|EFK70207.1| transcription elongation factor GreB [Escherichia coli MS 124-1] gi|315255996|gb|EFU35964.1| transcription elongation factor GreB [Escherichia coli MS 85-1] Length = 170 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFDRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168 >gi|297538751|ref|YP_003674520.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297258098|gb|ADI29943.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 168 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G I+ E + ERP ++K +S A GD SEN +Y K + R Sbjct: 9 EKNYITPEGHAAIEAEFTELLKVERPALVKVVSWAAGNGDRSENGDYIYGKRRLRQIDSR 68 Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L + A ++D + G +++ FGA V+L + Y+IVG E G +S Sbjct: 69 LRFLMQRMDLAVIVDPAAQQGLEKVFFGAWVTLFSLKDDTEHTYRIVGKDELQPSLGYIS 128 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+GK++GDI+ V+ P GE+ YEI+ V + Sbjct: 129 WVSPLARALLGKQIGDIVKVSVPAGEEEYEIIDVQY 164 >gi|254362550|ref|ZP_04978651.1| transcription elongation factor [Mannheimia haemolytica PHL213] gi|261493833|ref|ZP_05990347.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495058|ref|ZP_05991525.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094151|gb|EDN75047.1| transcription elongation factor [Mannheimia haemolytica PHL213] gi|261309300|gb|EEY10536.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310536|gb|EEY11725.1| transcription elongation factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 160 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L + G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEAKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I V P G+ I ++ + Sbjct: 120 SIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWY 156 >gi|56963364|ref|YP_175095.1| transcription elongation factor GreA [Bacillus clausii KSM-K16] gi|81366412|sp|Q5WHM1|GREA_BACSK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56909607|dbj|BAD64134.1| transcriptional elongation factor GreA [Bacillus clausii KSM-K16] Length = 158 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T++G K+++EL + R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAEEKKHYMTAEGKKKLEEELHYLITTRRKEVVERIKVARSFGDLSENSEYDSAKEDQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+A+LE +I A +I+ + G+ ++ G TV L+E G+++ Y IVG E+D G Sbjct: 61 VEGRIAQLEKMIRNAVMIENEKVDGNVVSLGKTVRLMELPDGEEEEYTIVGSAESDPFEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+A++L+GK + D + VN PGGE EIL++ Sbjct: 121 KISNDSPMAQSLLGKTVNDRVVVNTPGGEMEVEILEIR 158 >gi|253996794|ref|YP_003048858.1| transcription elongation factor GreB [Methylotenera mobilis JLW8] gi|253983473|gb|ACT48331.1| transcription elongation factor GreB [Methylotenera mobilis JLW8] Length = 161 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +GF+ ++ E + ERP I++ +S A + GD SEN +Y K + R Sbjct: 6 EKNYITPEGFEALRAEFHQLYKIERPEIVRTVSWAASNGDRSENGDYIYGKRRLRQIDSR 65 Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 L + AE++D S +++ FGA V+L + + Y+IVG E + G +S Sbjct: 66 CRHLMRRMDLAEIVDASQQQHLEKVYFGAWVTLYNLDDDTEYTYRIVGKDELEPSKGYIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A++++GK +GD + P GE T+EI+++ + Sbjct: 126 WVSPLAKSILGKSIGDTVRAATPKGEATFEIIEIKY 161 >gi|88608560|ref|YP_506547.1| transcription elongation factor GreA [Neorickettsia sennetsu str. Miyayama] gi|123763706|sp|Q2GD99|GREA_NEOSM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|88600729|gb|ABD46197.1| transcription elongation factor GreA [Neorickettsia sennetsu str. Miyayama] Length = 159 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 112/156 (71%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G+ K+Q+EL + +P ++ A+++AR GDLSENAEY A++ Q+ EG Sbjct: 1 MRKLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ EL+ ++ AEVID+S +G+R+ FGA+V+L S YQIVG+ E+D++ G +S Sbjct: 61 KIRELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSPI +A++ KE+G+I+ ++ P G+KTY+IL V + Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156 >gi|146313451|ref|YP_001178525.1| transcription elongation factor GreB [Enterobacter sp. 638] gi|145320327|gb|ABP62474.1| transcription elongation factor GreB [Enterobacter sp. 638] Length = 157 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++D S ++ FGA V + + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLEYLRIVDYSPQQEGKVFFGAWVEIEN-DDGDTKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAIVQTPSGEASWYVNEIEYV 156 >gi|291515359|emb|CBK64569.1| transcription elongation factor GreA [Alistipes shahii WAL 8301] Length = 158 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +I +T++G+ KI+ EL + ERP I AI+EAR GDLSENAEY AA+E Q L Sbjct: 1 MAQEIIYLTAEGYKKIKDELEHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G Sbjct: 61 EMRIAKLEDTMANARVIDESKIDKSKVQILSKVTLLNHNNQKQMTYTIVAEHEANLREGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++I +PIA+AL+G++ GD + V P G +EIL + Sbjct: 121 LAIGTPIAKALLGRKKGDRVDVEVPAGTIHFEILDIS 157 >gi|205374243|ref|ZP_03227042.1| transcription elongation factor GreA [Bacillus coahuilensis m4-4] Length = 158 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T G +K++ EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+ Sbjct: 7 YPMTQAGKEKLENELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIV 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE +I A++I M+ D + G TV+ VE G++++Y IVG EAD G +S S Sbjct: 67 TLEAMIRNAKIIQEDEMNSDTVTLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+G+++ D +S+ PGGE I + Sbjct: 127 PIAKSLMGRKVEDEVSIQTPGGEMQVRITGIK 158 >gi|148976494|ref|ZP_01813190.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3] gi|145964070|gb|EDK29327.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3] Length = 160 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+++++ E E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNRLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G + Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D +V P G+K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFTVKTPEGDKEWFINSIRY 156 >gi|269140621|ref|YP_003297322.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267986282|gb|ACY86111.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304560408|gb|ADM43072.1| Transcription elongation factor GreB [Edwardsiella tarda FL6-60] Length = 158 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ +++D S ++ FGA V + GD K ++IVG E ++ +SI SP+ Sbjct: 66 RKCMSILKIVDYSPQQDGKVFFGAWVEVEN-ERGDIKRFRIVGYDEIFGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD +V P G+ + + + ++ Sbjct: 125 ARALLKKEVGDAATVATPQGDAEWYVNAIDYV 156 >gi|163942129|ref|YP_001647013.1| transcription elongation factor GreA [Bacillus weihenstephanensis KBAB4] gi|229135202|ref|ZP_04264001.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196] gi|163864326|gb|ABY45385.1| transcription elongation factor GreA [Bacillus weihenstephanensis KBAB4] gi|228648244|gb|EEL04280.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196] Length = 175 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPGGDEEAYIIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175 >gi|170693644|ref|ZP_02884802.1| transcription elongation factor GreB [Burkholderia graminis C4D1M] gi|170141426|gb|EDT09596.1| transcription elongation factor GreB [Burkholderia graminis C4D1M] Length = 206 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 46 KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE++D S D++ FGATV ++ GD+ IVG E D+ G VS Sbjct: 106 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYATQD-GDEHTVTIVGIDEVDLDIGHVSW 164 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 165 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 199 >gi|257464600|ref|ZP_05628971.1| transcription elongation factor GreB [Actinobacillus minor 202] gi|257450260|gb|EEV24303.1| transcription elongation factor GreB [Actinobacillus minor 202] Length = 162 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRAGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L + G+ Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEVAQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK D I+V P G+ + I ++ + Sbjct: 120 SIDSPVARALIGKMQDDEITVETPVGKVMWFINKIWY 156 >gi|222528673|ref|YP_002572555.1| transcription elongation factor GreA [Caldicellulosiruptor bescii DSM 6725] gi|312623018|ref|YP_004024631.1| transcription elongation factor grea [Caldicellulosiruptor kronotskyensis 2002] gi|222455520|gb|ACM59782.1| transcription elongation factor GreA [Caldicellulosiruptor bescii DSM 6725] gi|312203485|gb|ADQ46812.1| transcription elongation factor GreA [Caldicellulosiruptor kronotskyensis 2002] Length = 162 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 93/153 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD++ V+ P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEIS 161 >gi|329297354|ref|ZP_08254690.1| transcription elongation factor GreB [Plautia stali symbiont] Length = 211 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTQLITREGYNKLRAEHDHLWNEKRPEITRIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ L + +++D + ++ FGA V + GD K ++IVG E D Sbjct: 61 RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVEN-EQGDVKRFRIVGPDEIYGDTVKDY 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI SP+ARALI KE+ + ++VN P G+K + + ++ ++ Sbjct: 120 ISIDSPMARALIKKEVDEEVTVNTPEGQKVWFVNRIEYV 158 >gi|322830974|ref|YP_004211001.1| transcription elongation factor GreB [Rahnella sp. Y9602] gi|321166175|gb|ADW71874.1| transcription elongation factor GreB [Rahnella sp. Y9602] Length = 157 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ EL + ++ERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYDKLKTELDFLWRDERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RIRYLTKCMEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD + V P G+ T+ + ++ + Sbjct: 120 IDSPMARALLKKEVGDSLVVTTPVGDATWYVNEIDY 155 >gi|206575923|ref|YP_002236222.1| transcription elongation factor GreB [Klebsiella pneumoniae 342] gi|206564981|gb|ACI06757.1| transcription elongation factor GreB [Klebsiella pneumoniae 342] Length = 157 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE+ + + ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQEMDYLWRHERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDTKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|332982218|ref|YP_004463659.1| transcription elongation factor GreA [Mahella australiensis 50-1 BON] gi|332699896|gb|AEE96837.1| transcription elongation factor GreA [Mahella australiensis 50-1 BON] Length = 158 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M++K +T +G +K+++EL + + +R I I +A A+GDLSENAEY AK Q Sbjct: 1 MINKETLLTVEGIEKLEKELEYLKTVKRREIAAKIKQALAFGDLSENAEYDEAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN++ A+VID ++ D++ G+TV L + GD + Y IVG EAD Sbjct: 61 EGRIVTLENMLRNAKVIDADEITTDKVTIGSTVVLRDIEMGDDEEYVIVGSAEADPFKHK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK GDI+ + P G Y I+ + Sbjct: 121 ISNESPVGKALLGKSKGDIVEITVPDGIIRYSIVDIK 157 >gi|16762784|ref|NP_458401.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144271|ref|NP_807613.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62182005|ref|YP_218422.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616543|ref|YP_001590508.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549293|ref|ZP_02343052.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232640|ref|ZP_02657698.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235096|ref|ZP_02660154.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260773|ref|ZP_02682746.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465229|ref|ZP_02699121.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818685|ref|ZP_02830685.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443767|ref|YP_002042754.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471051|ref|ZP_03077035.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738363|ref|YP_002116445.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249725|ref|YP_002148426.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198242185|ref|YP_002217462.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387248|ref|ZP_03213860.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928487|ref|ZP_03219686.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858743|ref|YP_002245394.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213417934|ref|ZP_03351023.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426886|ref|ZP_03359636.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582289|ref|ZP_03364115.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610173|ref|ZP_03369999.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647809|ref|ZP_03377862.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852069|ref|ZP_03381601.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585297|ref|YP_002639096.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910491|ref|ZP_04654328.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289807151|ref|ZP_06537780.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824835|ref|ZP_06544278.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25452995|sp|Q8Z217|GREB_SALTI RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|25321439|pir||AC0998 transcription elongation factor GreB greB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505090|emb|CAD08111.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi] gi|29139908|gb|AAO71473.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129638|gb|AAX67341.1| transcription elongation factor and transcript cleavage [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365907|gb|ABX69675.1| hypothetical protein SPAB_04359 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402430|gb|ACF62652.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457415|gb|EDX46254.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713865|gb|ACF93086.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632511|gb|EDX50995.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213428|gb|ACH50825.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291264|gb|EDY30616.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936701|gb|ACH74034.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604346|gb|EDZ02891.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321920|gb|EDZ07118.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325500|gb|EDZ13339.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333162|gb|EDZ19926.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344627|gb|EDZ31391.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350295|gb|EDZ36926.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710546|emb|CAR34904.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469825|gb|ACN47655.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087918|emb|CBY97680.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614123|gb|EFY11059.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618015|gb|EFY14908.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625371|gb|EFY22197.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629836|gb|EFY26609.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632275|gb|EFY29026.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636374|gb|EFY33081.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643230|gb|EFY39799.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644768|gb|EFY41304.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651207|gb|EFY47591.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654925|gb|EFY51240.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659182|gb|EFY55434.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663117|gb|EFY59321.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668603|gb|EFY64756.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674593|gb|EFY70686.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678201|gb|EFY74262.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682542|gb|EFY78563.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684255|gb|EFY80261.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716493|gb|EFZ08064.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192190|gb|EFZ77422.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196384|gb|EFZ81536.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201815|gb|EFZ86878.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206357|gb|EFZ91318.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211950|gb|EFZ96777.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216856|gb|EGA01579.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222255|gb|EGA06638.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224269|gb|EGA08558.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228198|gb|EGA12329.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233535|gb|EGA17628.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237003|gb|EGA21070.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243782|gb|EGA27798.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245976|gb|EGA29963.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250752|gb|EGA34630.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255763|gb|EGA39513.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261379|gb|EGA44965.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267648|gb|EGA51130.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268529|gb|EGA51996.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625243|gb|EGE31588.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 157 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156 >gi|78222321|ref|YP_384068.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] gi|78193576|gb|ABB31343.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 161 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K++ EL W +EERPR+ + +S+A A GD SENAEY K+ + R+ Sbjct: 7 YITPEGAKKLRDELAWLWKEERPRVTQGVSDAAAEGDRSENAEYIYGKKRLREIDRRIRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ + ++ FGA + L E GD+ Y++VG E D G +SI SP Sbjct: 67 LTQRLDHLTVVEDPPPATGKVFFGAWIRL-ETEEGDEVIYRVVGPDETDASKGFISIDSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +AL+G+ GD + V P GE + +L+V + Sbjct: 126 MGKALLGRNEGDEVPVRRPAGEAVFTVLEVAY 157 >gi|327395566|dbj|BAK12988.1| transcription elongation factor GreB [Pantoea ananatis AJ13355] Length = 158 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I + ++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLSKSIEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDVKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ K +GD V P G + + ++ ++ Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156 >gi|262273560|ref|ZP_06051374.1| transcription elongation factor GreB [Grimontia hollisae CIP 101886] gi|262222538|gb|EEY73849.1| transcription elongation factor GreB [Grimontia hollisae CIP 101886] Length = 161 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M VT +G++K++QEL + E RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKKTDLVTREGYNKLKQELDYLWNERRPEITKIVSWAASLGDRSENADYTYNKRLLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + VID S ++ FGA V + + GD +++IVG E + + Sbjct: 61 RRVRYLRKRLEVLRVIDYSPQQDGKVFFGAWVDVEN-DDGDTLSFRIVGPDEIYGRKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALI KE+ D V P G K + + ++ + Sbjct: 120 SIDSPMARALIKKEVDDEAVVATPEGPKVWYVNRIRY 156 >gi|51894292|ref|YP_076983.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51857981|dbj|BAD42139.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 157 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + ++ G +++QEL + + +R + + I +AR YGD+SEN+EY+ AK Q Sbjct: 1 MAEKEVLLSLDGLKQLEQELLYLRTVKRMEVAERIKQAREYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A VID + + G+TV L + GD+ Y IVG EAD Sbjct: 61 EGRILVLEKMLRNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RA++G+ +G +++V+AP G YEI+ + Sbjct: 121 ISNESPVGRAIMGQRVGTVVAVDAPDGVFKYEIVAIK 157 >gi|157148990|ref|YP_001456309.1| transcription elongation factor GreB [Citrobacter koseri ATCC BAA-895] gi|157086195|gb|ABV15873.1| hypothetical protein CKO_04828 [Citrobacter koseri ATCC BAA-895] Length = 157 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKHELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD + ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DEGDIRRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ V+ P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAVVHTPAGEASWYVNEIEYV 156 >gi|28871634|ref|NP_794253.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato str. DC3000] gi|213966657|ref|ZP_03394808.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato T1] gi|301383167|ref|ZP_07231585.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato Max13] gi|302063398|ref|ZP_07254939.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato K40] gi|302133771|ref|ZP_07259761.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999561|sp|Q87WP5|GREA_PSESM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|28854886|gb|AAO57948.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato str. DC3000] gi|213928507|gb|EEB62051.1| transcription elongation factor GreA [Pseudomonas syringae pv. tomato T1] gi|331016638|gb|EGH96694.1| transcription elongation factor GreA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 158 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G + Sbjct: 61 RIRDIEGRMQNAVVIDVTTIAHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SPIARALI KE GD++ V P G YEI++V I Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158 >gi|300931063|ref|ZP_07146417.1| transcription elongation factor GreB [Escherichia coli MS 187-1] gi|300461083|gb|EFK24576.1| transcription elongation factor GreB [Escherichia coli MS 187-1] Length = 170 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ KE+GD+ VN P GE ++ + + ++ Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168 >gi|184155762|ref|YP_001844102.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|227515646|ref|ZP_03945695.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931] gi|260663522|ref|ZP_05864412.1| transcription elongation factor GreA [Lactobacillus fermentum 28-3-CHN] gi|238692987|sp|B2GD90|GREA_LACF3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|183227106|dbj|BAG27622.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|227086076|gb|EEI21388.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931] gi|260552063|gb|EEX25116.1| transcription elongation factor GreA [Lactobacillus fermentum 28-3-CHN] Length = 158 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 97/158 (61%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T+ G K++QEL + RP +I I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MAEEKSFPMTADGKAKLEQELEDLRLVRRPEVINRIKIARSYGDLSENSEYESAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR++++E ++ A +ID ++ D ++ G ++ E + ++Y IVG+ E+D SG Sbjct: 61 VEGRISQIETMLQYAVIIDNEDVAADEVSMGREITFQELPDEEPESYTIVGESESDPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+A+ L+G ++GD + + P G +IL V Sbjct: 121 KISNESPMAKGLLGHKVGDTVEIEIPNGSMKVKILSVK 158 >gi|315634956|ref|ZP_07890237.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC 33393] gi|315476218|gb|EFU66969.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC 33393] Length = 160 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 2 MAKSNYITRQGWNVLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 61 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D + Sbjct: 62 RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENED-GEVKQYRIVGCDEFDPAKNWI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE D I+V P G+ + ++ + Sbjct: 121 SIDSPVARALIGKEEDDEITVETPSGKIQLYVNRIWY 157 >gi|320157698|ref|YP_004190077.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O] gi|319933010|gb|ADV87874.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O] Length = 160 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D + ++ FGA V + +G+ ++IVG +E G + Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D + V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156 >gi|317128247|ref|YP_004094529.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM 2522] gi|315473195|gb|ADU29798.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM 2522] Length = 157 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 97/154 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G +K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR Sbjct: 4 EKHYMTLEGKEKLEKELEYLKTERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ +E +I A +I + + + G TVS E GD++ Y IVG EAD G +S Sbjct: 64 ISTIEKMIRNAVMIKEDSTNTSVVTLGKTVSFKELPDGDEEEYTIVGRAEADPLEGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A++L+GK +G ++V PGG+ EIL+V Sbjct: 124 DSPMAQSLMGKSVGQKVTVATPGGDMEVEILEVK 157 >gi|330877243|gb|EGH11392.1| transcription elongation factor GreA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 158 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E + A VID++T+ ++ FG TV + + ++ Y+IVG+ EA+++ G + Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDERVTYKIVGEDEANIKDGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SPIARALI KE GD++ V P G YEI++V Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRH 157 >gi|332652694|ref|ZP_08418439.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] gi|332517840|gb|EGJ47443.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] Length = 157 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 96/156 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + ++Q EL + + + + I EAR++GDLSEN+EY AK Q Sbjct: 1 MAKEYKLTPQRLQELQDELVYLKTVREKEVAELIKEARSFGDLSENSEYDEAKTEQGKLY 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+E I++ VID S G+ + G+TV++++K ++ Y+IVG QEAD +G++ Sbjct: 61 SRIAEVEEILSNYVVIDESDDGGNYVRIGSTVTVLDKEFDEELVYKIVGSQEADPMNGVI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP RAL+GK +GD + V+AP G Y++L+V Sbjct: 121 SEDSPFGRALLGKNVGDDVVVDAPAGSVEYKLLKVE 156 >gi|161486671|ref|NP_933028.2| transcription elongation factor GreB [Vibrio vulnificus YJ016] gi|60392329|sp|Q7MPX6|GREB_VIBVY RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB Length = 160 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D + ++ FGA V + +G+ ++IVG +E G + Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D + V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156 >gi|189499862|ref|YP_001959332.1| transcription elongation factor GreA [Chlorobium phaeobacteroides BS1] gi|238692290|sp|B3EPH3|GREA_CHLPB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189495303|gb|ACE03851.1| transcription elongation factor GreA [Chlorobium phaeobacteroides BS1] Length = 160 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D++ +T G+++++ EL + + R +++ I+EARA+GDLSENAEY AA+E Q E Sbjct: 1 MSDRVYLTKDGYNRLRDELTVLKSDVRKEVLEKIAEARAHGDLSENAEYDAAREQQRQLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSG 118 ++ +LE+ +TRA ++D + DR+ +V L ++ ++ Y +V EAD G Sbjct: 61 NKIGDLESKLTRATILDPKQVKTDRVYILTSVKLKNLDAQKEEIIEYTLVSSDEADTDLG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ ++L+GK +GD + + P GE YEIL++ Sbjct: 121 KISVRSPVGKSLLGKAVGDKVQIQVPKGELHYEILEI 157 >gi|256847484|ref|ZP_05552930.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] gi|256716148|gb|EEU31123.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 104/158 (65%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D+ P+T++G +K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MADEKTFPMTAEGKEKLEQELEDLRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR++++EN++ A +ID ++ D ++ G +V+ E + + Y IVG+ E+D SG Sbjct: 61 VEGRISQIENMLQYAVIIDNDDVAADEVSMGRSVTFKELPDEEPETYTIVGESESDPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+A+ L+G ++G+ + ++ P G EI++V Sbjct: 121 KISNESPMAKGLLGHKVGEKVDIDIPSGIMHVEIIEVK 158 >gi|251794119|ref|YP_003008850.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] gi|247541745|gb|ACS98763.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK I +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+ G ++ V+ P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDIK 157 >gi|302343822|ref|YP_003808351.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075] gi|301640435|gb|ADK85757.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075] Length = 155 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 101/155 (65%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ +T +G ++Q+EL ++ E P +KAI EARA+GDLSENAEY AAKE + Sbjct: 1 MERKLLTREGQIRLQRELDHLRKVELPASVKAIEEARAHGDLSENAEYHAAKERNAIVAA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++AEL++ + +EVID + R+ FG V++ + + ++ +YQIVG E+D G +S Sbjct: 61 KIAELKSELALSEVIDPLPQADGRVVFGCKVTIYDSETDEEASYQIVGAAESDASQGRMS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++SP+ +AL+GKE GD + V PGG + EI+ V Sbjct: 121 MTSPMGQALLGKEEGDEVKVQTPGGLRVIEIVSVQ 155 >gi|18311448|ref|NP_563382.1| transcription elongation factor GreA [Clostridium perfringens str. 13] gi|110799156|ref|YP_697154.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110802874|ref|YP_699722.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|168206861|ref|ZP_02632866.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|168211212|ref|ZP_02636837.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|168215146|ref|ZP_02640771.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|168218226|ref|ZP_02643851.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] gi|169343179|ref|ZP_02864200.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|182625990|ref|ZP_02953753.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|25452992|sp|Q8XHL7|GREA_CLOPE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122956482|sp|Q0SQ85|GREA_CLOPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122958663|sp|Q0TMI6|GREA_CLOP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|18146132|dbj|BAB82172.1| transcriptional elongation factor [Clostridium perfringens str. 13] gi|110673803|gb|ABG82790.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110683375|gb|ABG86745.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|169298731|gb|EDS80807.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|170661751|gb|EDT14434.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|170710773|gb|EDT22955.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|170713439|gb|EDT25621.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|177908697|gb|EDT71208.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|182379757|gb|EDT77236.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q Sbjct: 1 MSEKKHIMTYEGVKKLEDELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFT 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +LEN++ A V+D S +S D + G+ V +++ + ++ Y IVG EAD + Sbjct: 61 EGRIIQLENMLKNAVVVDESEISTDIVTVGSIVKVMDFDFDEEVEYSIVGSAEADPMNFK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ L+GK++GD++ + PGG +E+L + Sbjct: 121 ISNESPVGEGLMGKKVGDVVEIEVPGGTTKFEVLGIR 157 >gi|282858005|ref|ZP_06267206.1| transcription elongation factor GreA [Pyramidobacter piscolens W5455] gi|282584159|gb|EFB89526.1| transcription elongation factor GreA [Pyramidobacter piscolens W5455] Length = 164 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 98/154 (63%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T +G+DK+ EL+ + EER +I + I EAR++GDLSENAEY AAK+ Q EG+ Sbjct: 9 DTVLMTQEGYDKLSTELKQLRSEERYKIARRIEEARSFGDLSENAEYAAAKDDQAKLEGK 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E ++RA++ID +++ ++ G TV++++ + Y IV +E+D + GL+S Sbjct: 69 IQVMEYQLSRAKIIDSASLDNSHVSVGTTVTIMDITHNKEFVYSIVSSEESDPEKGLISS 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+ K +GD + V P G + I ++ Sbjct: 129 VSPVGRALMNKRVGDEVPVKVPMGIRKLRIRKIR 162 >gi|319761755|ref|YP_004125692.1| transcription elongation factor greb [Alicycliphilus denitrificans BC] gi|317116316|gb|ADU98804.1| transcription elongation factor GreB [Alicycliphilus denitrificans BC] Length = 188 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +S Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEADNGLQQISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ P G +T EIL V + Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180 >gi|302871282|ref|YP_003839918.1| GreA/GreB family elongation factor [Caldicellulosiruptor obsidiansis OB47] gi|302574141|gb|ADL41932.1| GreA/GreB family elongation factor [Caldicellulosiruptor obsidiansis OB47] Length = 162 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 93/153 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAAVEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD++ VN P G+ Y+IL++ Sbjct: 129 SPVGKALVGKKVGDVVEVNVPAGKFRYKILEIS 161 >gi|317494411|ref|ZP_07952825.1| transcription elongation factor GreB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917661|gb|EFV39006.1| transcription elongation factor GreB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTQLITRGGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + G K ++IVG E Q +S Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DEGTIKRFRIVGYDEIFGQKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD ++V P GE + + ++ + Sbjct: 120 IDSPMARALLKKEVGDAVTVMTPAGEAVWYVNEIEY 155 >gi|291619237|ref|YP_003521979.1| GreB [Pantoea ananatis LMG 20103] gi|291154267|gb|ADD78851.1| GreB [Pantoea ananatis LMG 20103] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLSKSLEQLRIVDYSPQQDGKVFFGAWVEVEN-DEGDVKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ K +GD V P G + + ++ ++ Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156 >gi|152989359|ref|YP_001347666.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7] gi|150964517|gb|ABR86542.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7] Length = 168 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADANRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V P GEK + ++++ + Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIDY 164 >gi|300919309|ref|ZP_07135822.1| transcription elongation factor GreB [Escherichia coli MS 115-1] gi|300413604|gb|EFJ96914.1| transcription elongation factor GreB [Escherichia coli MS 115-1] Length = 153 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ARAL+ KE+GD+ VN P GE ++ + + Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAI 153 >gi|300718779|ref|YP_003743582.1| transcription elongation factor [Erwinia billingiae Eb661] gi|299064615|emb|CAX61735.1| Transcription elongation factor [Erwinia billingiae Eb661] Length = 159 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTQLITREGYDKLKQELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +++ S ++ FGA V + ++GD K ++I G E ++ +S Sbjct: 61 RVRYLTKCLEQLRIVEYSPQQDGKVFFGAWVEIEN-DAGDVKRFRIAGYDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD+ V P G+ + ++ + ++ Sbjct: 120 IDSPMARALLKKEVGDLAVVPTPVGDAHWYVVAIDYV 156 >gi|300311440|ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] gi|300074225|gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G +I+ EL EERP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 28 KNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D+I FGATV+ + G+ IVG E D G +S Sbjct: 88 RFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQR-GEAHTVTIVGIDELDPLKGRISW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL GD + + P G + IL+V + Sbjct: 147 ISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181 >gi|213964046|ref|ZP_03392289.1| transcription elongation factor GreA [Capnocytophaga sputigena Capno] gi|213953328|gb|EEB64667.1| transcription elongation factor GreA [Capnocytophaga sputigena Capno] Length = 157 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 94/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MKKVSYYTPEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G + Sbjct: 61 MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+SSPI + L+GK +G+I + P G EIL++ Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEILEIS 156 >gi|288933209|ref|YP_003437268.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|290512013|ref|ZP_06551381.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55] gi|288887938|gb|ADC56256.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|289775803|gb|EFD83803.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55] Length = 157 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDTKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|190571574|ref|YP_001975932.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018976|ref|ZP_03334783.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357846|emb|CAQ55302.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995085|gb|EEB55726.1| transcription elongation factor GreA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 164 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 +V+K P+T +GF+ +Q EL ++E+ P II+AIS+AR GDLSENAEY AA+E + E Sbjct: 5 IVNKFPITREGFESMQVELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLSFIE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117 GR+ E+E+ ++ AEVI++ +SGD + FGATV++ + NS + Y+IVG EAD Sbjct: 64 GRIIEVESKLSHAEVIEVKNLSGDTVMFGATVTVSMLGDDNSEIEYVYKIVGGYEADASK 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 L+S SP+ ALIGK++G+ + V P GEK Y+I+++ + Sbjct: 124 QLISTDSPLGSALIGKKVGEYVEVIVPNGEKLYKIVKIEF 163 >gi|330826535|ref|YP_004389838.1| transcription elongation factor GreB [Alicycliphilus denitrificans K601] gi|329311907|gb|AEB86322.1| transcription elongation factor GreB [Alicycliphilus denitrificans K601] Length = 188 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +S Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEADNGLQQISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ P G +T EIL V + Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180 >gi|134298052|ref|YP_001111548.1| transcription elongation factor GreA [Desulfotomaculum reducens MI-1] gi|134050752|gb|ABO48723.1| transcription elongation factor GreA [Desulfotomaculum reducens MI-1] Length = 158 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G +++ EL + +R ++ + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MKEKDVMLTVTGLKQLEDELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD + Sbjct: 61 EGRILTLEKMLRNAKIIDDENLDNEVVSLGSKVILKDLEFGDELEYSIVGSVEADPDANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RA++G+ G ++ VN P G YEI+ +L Sbjct: 121 ISNESPVGRAILGQSKGSVVEVNVPAGILKYEIVDIL 157 >gi|270264441|ref|ZP_06192707.1| transcription elongation factor GreB [Serratia odorifera 4Rx13] gi|270041577|gb|EFA14675.1| transcription elongation factor GreB [Serratia odorifera 4Rx13] Length = 157 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MRTQLITREGYDNLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +++D S ++ FGA V + +G+ K ++IVG E + +S Sbjct: 61 RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVEN-ENGECKRFRIVGYDEIFGRRDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD +VN P G+ + + ++ ++ Sbjct: 120 IDSPMARALLKKEVGDAATVNTPVGDALWYVNEIEYV 156 >gi|312879693|ref|ZP_07739493.1| transcription elongation factor GreA [Aminomonas paucivorans DSM 12260] gi|310782984|gb|EFQ23382.1| transcription elongation factor GreA [Aminomonas paucivorans DSM 12260] Length = 153 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 94/150 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R+ L Sbjct: 2 MTREGYEKLKQELISLRGDGRSEIAAKLEEARAFGDLSENAEYHAAKEEQEKLESRILWL 61 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +++ ++++ + ++ G TVSL + ++ + Y +VG +EAD ++ +S SP+ Sbjct: 62 EYQLSKTRIVEVGDLDTSSVSLGTTVSLRDLDAQTQYTYTLVGSEEADPKTNRISSQSPV 121 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++GK +G+ + V P G + ++L++ Sbjct: 122 GKAILGKTVGEEVMVRVPKGVRHLKVLEIR 151 >gi|254520541|ref|ZP_05132597.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA] gi|226914290|gb|EEH99491.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA] Length = 160 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 89/155 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG Sbjct: 4 TKKFVMTYEGVKKLEDELEFLKSVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A V+D S + D+++ G V + + ++ Y IVG EAD +S Sbjct: 64 RIIQLENMLKNAVVVDGSEIPTDKVSVGTKVKVKDYEFDEEVEYSIVGSAEADPMEFKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+GK++G+I+ V PGG +EIL + Sbjct: 124 NESPVGAALLGKKVGEIVEVLVPGGINKFEILGIR 158 >gi|254797022|ref|YP_003081859.1| transcription elongation factor GreA [Neorickettsia risticii str. Illinois] gi|254590253|gb|ACT69615.1| transcription elongation factor GreA [Neorickettsia risticii str. Illinois] Length = 157 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 112/156 (71%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+P+T +G+ K+Q+EL + +P +I A+++AR GDLSENAEY A++ Q+ EG Sbjct: 1 MRKLPITREGYCKLQEELEKLVKVVKPSVIAAVAQARELGDLSENAEYHEARKEQSFVEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ EL+ ++ AEVID+S +G+R+ FGA+V+L + YQIVG+ E+D++ G +S Sbjct: 61 KIRELQLHLSEAEVIDVSQFTGERVKFGASVTLENMENESVLVYQIVGNLESDIKEGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SSPI +A++ KE+G+I+ ++ P G+KTY+IL V + Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156 >gi|16766791|ref|NP_462406.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990706|ref|ZP_02571805.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168241643|ref|ZP_02666575.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447454|ref|YP_002047527.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264550|ref|ZP_03164624.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|25452998|sp|Q8ZLJ2|GREB_SALTY RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|16422062|gb|AAL22365.1| transcription elongation factor and transcript cleavage [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194405758|gb|ACF65977.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242805|gb|EDY25425.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205330768|gb|EDZ17532.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338738|gb|EDZ25502.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248658|emb|CBG26496.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995723|gb|ACY90608.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160046|emb|CBW19565.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914527|dbj|BAJ38501.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226553|gb|EFX51603.1| Transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131862|gb|ADX19292.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990355|gb|AEF09338.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ FGA V + + GD+ ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDRLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156 >gi|253576833|ref|ZP_04854158.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon 786 str. D14] gi|251843700|gb|EES71723.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon 786 str. D14] Length = 158 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T G ++++EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQDGLKRLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSIVTVEDLEFGDTMEYAIVGTAESDPMQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+ G I+ VN P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKKGAIVDVNVPAGVIQYKIVDIK 157 >gi|116495149|ref|YP_806883.1| transcription elongation factor [Lactobacillus casei ATCC 334] gi|191638657|ref|YP_001987823.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus casei BL23] gi|227534836|ref|ZP_03964885.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632029|ref|ZP_04675060.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066713|ref|YP_003788736.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|116105299|gb|ABJ70441.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] gi|190712959|emb|CAQ66965.1| Transcription elongation factor GreA (Transcriptcleavage factor GreA) [Lactobacillus casei BL23] gi|227187592|gb|EEI67659.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526494|gb|EEQ65495.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439120|gb|ADK18886.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327382699|gb|AEA54175.1| Elongation factor GreA [Lactobacillus casei LC2W] gi|327385886|gb|AEA57360.1| Elongation factor GreA [Lactobacillus casei BD-II] Length = 156 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK P+T++G K++ EL + ++RP +I I AR +GDLSEN+EY+AAK+ Q+ Sbjct: 1 MADKSYPMTAEGKKKLEDELEELKTKKRPEVIDRIKVARGFGDLSENSEYEAAKDEQSTL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++ ++ AE+ID ++ + ++ G V+ + GD++ Y+IVG EAD +G Sbjct: 61 ENRIVTIQTMLRYAEIIDSKAVAKNEVSLGKKVTF--EEDGDEETYEIVGAAEADAFNGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ LIG+++GD ++++ PGGE +I +V Sbjct: 119 ISNESPIAQGLIGRKVGDKVTISTPGGEMKIKITKVE 155 >gi|332533239|ref|ZP_08409106.1| transcription elongation factor GreB [Pseudoalteromonas haloplanktis ANT/505] gi|332037318|gb|EGI73773.1| transcription elongation factor GreB [Pseudoalteromonas haloplanktis ANT/505] Length = 159 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + Sbjct: 1 MKTNLVTREGYLQLQQEHDQLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I ++ID S + ++ FGA V + + G+ K ++IVG E + +S Sbjct: 61 RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIENEE-GEVKKFRIVGPDEIYDRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI K++ D V P G+K + + + + Sbjct: 120 IDSPMARALIKKQVDDEFEVTTPQGKKQWYVNSIDY 155 >gi|218708218|ref|YP_002415839.1| transcription elongation factor GreB [Vibrio splendidus LGP32] gi|218321237|emb|CAV17187.1| Transcription elongation factor greB [Vibrio splendidus LGP32] Length = 160 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G + Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D +V P G+K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 156 >gi|256819149|ref|YP_003140428.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM 7271] gi|315224575|ref|ZP_07866401.1| transcription elongation factor GreA [Capnocytophaga ochracea F0287] gi|256580732|gb|ACU91867.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM 7271] gi|314945441|gb|EFS97464.1| transcription elongation factor GreA [Capnocytophaga ochracea F0287] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MKKVSYYTAEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G + Sbjct: 61 MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+SSPI + L+GK +G+I + P G EIL++ Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKLEILEIS 156 >gi|229918442|ref|YP_002887088.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b] gi|229469871|gb|ACQ71643.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T G KI+ EL + R +++ I AR +GDLSENAEY AAKE Q + Sbjct: 1 MAEKQHYMTLDGKAKIEHELNELKTVRRKEVVENIKIARDFGDLSENAEYDAAKEEQAMV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+A+LE ++ A +I ++ G TV+ + + + Y IVG EAD +G Sbjct: 61 EGRIAQLEEMLRNAVIIQDDAGDNSVVSIGKTVTFFIQEDNEDETYTIVGGAEADPFTGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+G+ +GD+++V PGG+ EI ++ Sbjct: 121 ISNESPIAKALLGRTIGDVVTVQTPGGDMVVEIKEIK 157 >gi|161505931|ref|YP_001573043.1| transcription elongation factor GreB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867278|gb|ABX23901.1| hypothetical protein SARI_04112 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D + ++ FGA V + + GD ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYAPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156 >gi|119471395|ref|ZP_01613867.1| transcription elongation factor and transcript cleavage [Alteromonadales bacterium TW-7] gi|119445671|gb|EAW26955.1| transcription elongation factor and transcript cleavage [Alteromonadales bacterium TW-7] Length = 160 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + Sbjct: 1 MKTNLITREGYLQLQQEHDHLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I +ID S + ++ FGA V + GD K ++IVG E + +S Sbjct: 61 RVRYLRKRIPDLNIIDYSPVQDGKVFFGAWVEIEN-EQGDIKKFRIVGPDEIYDRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI K++ D V P G+K + I + + Sbjct: 120 IDSPMARALIKKQVDDDFEVMTPQGKKEWYINSIEY 155 >gi|148381460|ref|YP_001256001.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 3502] gi|153933740|ref|YP_001385835.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|153937864|ref|YP_001389242.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|229485762|sp|A7FZA6|GREA_CLOB1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|229485764|sp|A5I7P5|GREA_CLOBH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148290944|emb|CAL85080.1| transcription elongation factor [Clostridium botulinum A str. ATCC 3502] gi|152929784|gb|ABS35284.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|152933778|gb|ABS39277.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] Length = 160 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 90/154 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG Sbjct: 4 AKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 64 RIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ LIGK+ GDII V P G YEIL+V Sbjct: 124 NESPVGHGLIGKKAGDIIEVAVPDGVSKYEILEV 157 >gi|303242488|ref|ZP_07328968.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] gi|302589956|gb|EFL59724.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] Length = 158 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 95/157 (60%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV K + +T +G K++QEL + + +R + + I +A A+GDLSEN+EY AK Q Sbjct: 1 MVKKEVVLTYEGLQKLEQELEFLKAVKRREVAERIKQALAFGDLSENSEYDEAKNEQAHV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +LEN++ A+VID + D ++ G+ V++++ ++ Y IVG EA+ Sbjct: 61 EGRIVQLENMLKNAKVIDEDEVKTDVVSVGSKVTILDIEFNEEIEYYIVGSAEANPSQFK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK+ G ++ VN P G ++I+ + Sbjct: 121 ISNESPVGSALMGKKKGTVVDVNVPDGIVKFKIVNIK 157 >gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56'] gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T G ++ +EL + ERPR+++ +++A A GD SENAEY K+ + Sbjct: 1 MSDPAYITPSGARRLSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 RM L + +A V+D S GD++ FGATV + +++ G ++ YQIVG+ E D +G + Sbjct: 61 RRMHYLTKRLEKAVVVDPSEQRGDKVFFGATVEIEDED-GARRTYQIVGEDEIDSAAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+ R+L+GK GD+I+V P GE E++ V + Sbjct: 120 SWRSPVGRSLLGKRAGDVITVRRPAGEAEMELISVRY 156 >gi|145631751|ref|ZP_01787512.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|144982612|gb|EDJ90158.1| transcription elongation factor GreB [Haemophilus influenzae R3021] Length = 158 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFSPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|193214258|ref|YP_001995457.1| transcription elongation factor GreA [Chloroherpeton thalassium ATCC 35110] gi|238692700|sp|B3QV56|GREA_CHLT3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193087735|gb|ACF13010.1| transcription elongation factor GreA [Chloroherpeton thalassium ATCC 35110] Length = 158 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 99/156 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK +T G++K++ EL + R ++++ I+EA+++GDLSENAEY+AAKE Q E Sbjct: 1 MSDKTYLTKGGYNKLKDELDDLKTNVRQQVLEKITEAKSHGDLSENAEYEAAKEEQAQVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE +++ A ++D + D++ TV L + + ++ Y +V +EAD ++G + Sbjct: 61 SRISTLERVLSTATILDEKDIKTDKVYILTTVLLKDLDRDEEVEYTLVSSEEADSENGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GK +G+I+ + P G YE+L + Sbjct: 121 SVKSPIGKNLLGKSVGEIVEIKVPKGIMRYEVLNIK 156 >gi|33592252|ref|NP_879896.1| transcription elongation factor GreB [Bordetella pertussis Tohama I] gi|33595908|ref|NP_883551.1| transcription elongation factor GreB [Bordetella parapertussis 12822] gi|33601290|ref|NP_888850.1| transcription elongation factor GreB [Bordetella bronchiseptica RB50] gi|33565987|emb|CAE36540.1| transcription elongation factor [Bordetella parapertussis] gi|33571897|emb|CAE41415.1| transcription elongation factor [Bordetella pertussis Tohama I] gi|33575726|emb|CAE32803.1| transcription elongation factor [Bordetella bronchiseptica RB50] gi|332381670|gb|AEE66517.1| transcription elongation factor GreB [Bordetella pertussis CS] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 30 YMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEV+D + D++ FGATV +++ +G+++ IVG EA+ +G +S S Sbjct: 90 LTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDR-AGEERTVTIVGVDEAEPLAGKISWIS 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL GD +++ PGG + EIL+V + Sbjct: 149 PVARALTKAHEGDTVTLRTPGGVEELEILEVRY 181 >gi|188590469|ref|YP_001919617.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|251779196|ref|ZP_04822116.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689627|sp|B2UXU9|GREA_CLOBA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|188500750|gb|ACD53886.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|243083511|gb|EES49401.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 90/154 (58%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG+ Sbjct: 5 KQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGK 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S Sbjct: 65 ILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GDI+ V P G +EIL + Sbjct: 125 ESPVGKALVGKKIGDIVDVVVPDGISKFEILDIQ 158 >gi|51246041|ref|YP_065925.1| transcription elongation factor (GreA) [Desulfotalea psychrophila LSv54] gi|81641701|sp|Q6AL57|GREA_DESPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|50877078|emb|CAG36918.1| probable transcription elongation factor (GreA) [Desulfotalea psychrophila LSv54] Length = 161 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 107/156 (68%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M+D+IP++ +G K+++EL + ER ++KAI AR +GDL ENAEY AAKE Q + E Sbjct: 1 MIDRIPMSVRGNKKLKEELLRLTRVERLDVVKAIEVAREHGDLKENAEYHAAKERQGMIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L++ + RAEVID +S R+ FG V L++ ++ ++ YQ++G +E++V++G + Sbjct: 61 ARIMDLKDKLGRAEVIDCLQVSCKRVVFGTVVVLLDLDTDEEVTYQLLGPEESEVKAGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI R+++ KE GD + PGG + +E++++ Sbjct: 121 SVLSPIGRSMLSKEEGDEVVTKTPGGTREFEVVEIK 156 >gi|228999165|ref|ZP_04158747.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17] gi|228760782|gb|EEM09746.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 7 YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S Sbjct: 67 QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158 >gi|317406344|gb|EFV86575.1| transcription elongation factor [Achromobacter xylosoxidans C54] Length = 183 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 79/154 (51%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 28 KNYMTPEGYERLRGELTHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + AEV+D + F L +G+ IVG EA+ +G +S Sbjct: 88 RFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYSDKAGEDHTVTIVGVDEAEPLAGKISWI 147 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI GD + + PGG + +IL+V + Sbjct: 148 SPVARALIKAREGDTVVLRTPGGIEELDILEVRY 181 >gi|294102451|ref|YP_003554309.1| transcription elongation factor GreA [Aminobacterium colombiense DSM 12261] gi|293617431|gb|ADE57585.1| transcription elongation factor GreA [Aminobacterium colombiense DSM 12261] Length = 163 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 91/149 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+ EL + + R I + + EAR++GDLSENAEY AAK+ Q+ E R++ L Sbjct: 12 MTRSGYEKLTAELVELRSDGRAEISRQLEEARSFGDLSENAEYAAAKDEQSKLESRISWL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +++A+VID S + R+ G TV++ + Y +VG +EAD + +S SSP+ Sbjct: 72 EFQLSKAKVIDTSDVDTSRVTLGTTVTIEDITHKKVFTYTVVGSEEADPKMNHISSSSPV 131 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL GK +G+ + V P G + +I+ + Sbjct: 132 GKALFGKTIGEEVQVKVPRGIRNLKIVSI 160 >gi|77361754|ref|YP_341329.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas haloplanktis TAC125] gi|76876665|emb|CAI87887.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas haloplanktis TAC125] Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ ++QQE +RP I K +S A + GD SENA+YQ K L + Sbjct: 1 MKTNLITREGYLQLQQEHTHLWNVKRPEITKIVSWAASLGDRSENADYQYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I ++ID S + ++ FGA V + G+ K ++IVG E + +S Sbjct: 61 RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIEN-EQGETKKFKIVGPDEIYERKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K++ D V P G+K + + + + Sbjct: 120 IDSPMARALLKKQVDDEFDVITPQGKKQWYVNSISY 155 >gi|303252629|ref|ZP_07338792.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247388|ref|ZP_07529435.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260861|ref|ZP_07542547.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302648597|gb|EFL78790.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856085|gb|EFM88241.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869428|gb|EFN01219.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 162 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRGGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|240949386|ref|ZP_04753727.1| transcription elongation factor GreB [Actinobacillus minor NM305] gi|240296135|gb|EER46791.1| transcription elongation factor GreB [Actinobacillus minor NM305] Length = 162 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRDGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L + G+ Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEVAQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK D I+V P G+ + I ++ + Sbjct: 120 SIDSPVARALIGKMQDDEITVETPIGKVMWFINKIWY 156 >gi|161501839|ref|NP_759835.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6] gi|31340138|sp|Q8DDU7|GREB_VIBVU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|319999141|gb|AAO09362.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6] Length = 160 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D + ++ FGA V + +G+ ++IVG +E G + Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D + V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156 >gi|85708556|ref|ZP_01039622.1| transcription elongation factor [Erythrobacter sp. NAP1] gi|85690090|gb|EAQ30093.1| transcription elongation factor [Erythrobacter sp. NAP1] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+ ++G++++ +L+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 MEKVPMLAEGYERLTTDLKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE I+RA++ID T+SGDRI FGATV+L++++ K YQIVG+ EAD G +S Sbjct: 63 QIGDLEGKISRAQIIDPKTLSGDRIIFGATVTLLDEDDKPIK-YQIVGETEADAAKGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SSP+ARA+IGK++ + I V P G+K Y + ++ +I Sbjct: 122 YSSPLARAMIGKQVEEEIEVTVPSGDKFYLVEKIEFI 158 >gi|68171284|ref|ZP_00544685.1| Prokaryotic transcription elongation factor GreA [Ehrlichia chaffeensis str. Sapulpa] gi|67999299|gb|EAM85947.1| Prokaryotic transcription elongation factor GreA [Ehrlichia chaffeensis str. Sapulpa] Length = 166 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 114/163 (69%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T GF K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 5 MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ YQIVG+ EAD+ Sbjct: 64 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 123 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I Sbjct: 124 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166 >gi|255533691|ref|YP_003094063.1| transcription elongation factor GreA [Pedobacter heparinus DSM 2366] gi|255346675|gb|ACU06001.1| transcription elongation factor GreA [Pedobacter heparinus DSM 2366] Length = 157 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 99/156 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T G DK+++EL++ + R I +AI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MTEVTYYTQDGLDKLKEELQYLKTTGRQLISRAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A++E ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G + Sbjct: 61 AKIAKMEATLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPIA+ L+GK +GD + P G+ +EIL++ Sbjct: 121 SVKSPIAKGLLGKSVGDTTEIEVPAGKMEFEILEIS 156 >gi|110597704|ref|ZP_01385988.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM 13031] gi|110340611|gb|EAT59091.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM 13031] Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL E R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLVHETRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119 R+A+LEN + A ++D + D++ +V L + + Y +V +EAD G Sbjct: 61 ARIADLENKLASATILDPKLIKTDKVYILTSVKLRNLDDEKEIIEYTLVSSEEADTDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK +G+ + + P G+ YEIL++ Sbjct: 121 ISVRSPVGRALIGKAVGEKVEIMVPKGKLHYEILEI 156 >gi|52426263|ref|YP_089400.1| transcription elongation factor GreB [Mannheimia succiniciproducens MBEL55E] gi|52308315|gb|AAU38815.1| GreA protein [Mannheimia succiniciproducens MBEL55E] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRAGWNVLDQELKYLWKDERPKVTQAVSDAAAMGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA + L SG+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYNPKQEGKVFFGAWIELEN-ESGEIKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D + V P G+ + + + Sbjct: 120 SIDSPVARALIGKQIDDEVRVETPAGKVLLYVNNIWY 156 >gi|323703648|ref|ZP_08115290.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans DSM 574] gi|323531363|gb|EGB21260.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans DSM 574] Length = 158 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G ++++EL + +R ++ + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MKEKDVMLTVTGLKQLEEELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD Sbjct: 61 EGRILTLEKMLRNAKIIDDENLGNEVVSLGSKVRLKDLEFGDEFEYTIVGSVEADPDKNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++G+ G I+ V+ P G YEIL ++ Sbjct: 121 ISNESPVGKAILGQPKGSIVEVSVPAGVLKYEILDII 157 >gi|165975847|ref|YP_001651440.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307256431|ref|ZP_07538213.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165875948|gb|ABY68996.1| transcription elongation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306865061|gb|EFM96962.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 162 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|325928883|ref|ZP_08190046.1| transcription elongation factor GreB [Xanthomonas perforans 91-118] gi|325540744|gb|EGD12323.1| transcription elongation factor GreB [Xanthomonas perforans 91-118] Length = 198 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 84/152 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 45 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 105 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ K + D + P G+ T+ ++ V ++ Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 196 >gi|32034733|ref|ZP_00134864.1| COG0782: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207870|ref|YP_001053095.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae L20] gi|126096662|gb|ABN73490.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 162 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ARALIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SLDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|146282377|ref|YP_001172530.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501] gi|145570582|gb|ABP79688.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501] Length = 172 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 22 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 81 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L +++ G++ Y+IVG E D++ G++SI SP+ Sbjct: 82 TKRLEKLKVVRERPSDPNKVYFGAWVTLEDED-GEQARYRIVGPDELDLRQGMISIDSPL 140 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GK L + V P G K + ++ + + Sbjct: 141 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 171 >gi|294341373|emb|CAZ89790.1| Transcription elongation factor greB (Transcript cleavage factor greB) [Thiomonas sp. 3As] Length = 188 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 31 KNYLTPQGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 90 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D++ FGATV + + G + IVG E + G +S Sbjct: 91 RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISW 149 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ PGG T EIL+V + Sbjct: 150 ISPVARALLKAREGDSVSLPTPGGIATLEILEVTY 184 >gi|145640545|ref|ZP_01796129.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|145642261|ref|ZP_01797826.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|145273017|gb|EDK12898.1| transcription elongation factor GreB [Haemophilus influenzae 22.4-21] gi|145275131|gb|EDK14993.1| transcription elongation factor GreB [Haemophilus influenzae 22.4-21] Length = 162 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY +K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYSKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|42522667|ref|NP_968047.1| hypothetical protein Bd1119 [Bdellovibrio bacteriovorus HD100] gi|39573863|emb|CAE79040.1| greB [Bdellovibrio bacteriovorus HD100] Length = 183 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G K++ E ERP++++ ++ A + GD SENA+YQ K + R Sbjct: 29 NKNYITPEGLAKLKAEYHALMHVERPKLVEVVAWAASNGDRSENADYQYGKRRLREIDRR 88 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I AE++D M G + F ATV+LV ++ GD+ YQIVG+ E D ++G +S Sbjct: 89 VHFLTKRIEDAELVDPKQMKGTTVLFSATVTLVNED-GDEVVYQIVGEDEFDPKAGKISW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+GK+LGD + + P GE+ I V + Sbjct: 148 KSPVARALLGKKLGDEVRIIKPAGEEFVTIENVEF 182 >gi|332877001|ref|ZP_08444754.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685109|gb|EGJ57953.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 157 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++K+ T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MEKVSYYTAEGMKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G + Sbjct: 61 MKIAKLEKLVANARIIDESQLDVSKVLVLSTVKLKNLANNMQLTYTLVAESEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+SSPI + L+GK +G+I + P G E+L++ Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEVLEIT 156 >gi|149189239|ref|ZP_01867526.1| transcription elongation factor GreB [Vibrio shilonii AK1] gi|148836993|gb|EDL53943.1| transcription elongation factor GreB [Vibrio shilonii AK1] Length = 161 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QE + E RP + K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + + G+ +++IVG +E G + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEE-GETMHFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + V P G+K + I + + Sbjct: 120 SIDSPMARALLKKQVDDEVVVKTPQGDKEWFINSITY 156 >gi|260582727|ref|ZP_05850514.1| transcription elongation factor GreB [Haemophilus influenzae NT127] gi|260094177|gb|EEW78078.1| transcription elongation factor GreB [Haemophilus influenzae NT127] Length = 162 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFSPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >gi|315127991|ref|YP_004069994.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913] gi|315016505|gb|ADT69843.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913] Length = 156 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G DK+ +EL + ++ RP I K ++ A + GD S+NA+Y+ K L + R+ L Sbjct: 6 ITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +VID S ++ FGA V + + G+ K ++IVG E ++ +SI SP+ Sbjct: 66 RKRIEAVKVIDYSPQQAGKVFFGAWVEIEN-DDGETKAFRIVGPDEIYGRNDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA++ KE+ D V P G K + I ++ + Sbjct: 125 ARAMLKKEVDDEFQVKTPVGVKEWFINKIEY 155 >gi|15603315|ref|NP_246389.1| transcription elongation factor GreB [Pasteurella multocida subsp. multocida str. Pm70] gi|13431537|sp|P57802|GREB_PASMU RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|12721829|gb|AAK03534.1| GreB [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V+L +G++K+Y+IVG E D + Sbjct: 61 RRVRFLTKRLEVLQIVDYHPKQEGKVFFGAWVALEN-EAGEEKHYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D I V P G I Q+ + Sbjct: 120 SIDSPVARALIGKSIDDEIKVETPSGLVILYINQIWY 156 >gi|88657640|ref|YP_506961.1| transcription elongation factor GreA [Ehrlichia chaffeensis str. Arkansas] gi|88599097|gb|ABD44566.1| transcription elongation factor GreA [Ehrlichia chaffeensis str. Arkansas] Length = 162 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 114/163 (69%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T GF K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 1 MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ YQIVG+ EAD+ Sbjct: 60 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I Sbjct: 120 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162 >gi|121535049|ref|ZP_01666866.1| transcription elongation factor GreA [Thermosinus carboxydivorans Nor1] gi|121306299|gb|EAX47224.1| transcription elongation factor GreA [Thermosinus carboxydivorans Nor1] Length = 159 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T G KI+Q+L + R + + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MAEKQTILTVDGLKKIEQKLEHLKSVRRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + LE ++ A+VID +S D + G+TV L + GD+ Y +VG EAD Sbjct: 61 EGEILTLEKMLRNAKVIDEGEISTDTVTIGSTVVLKDLEFGDELEYTLVGSAEADPMEFK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++G+++G ++ VN P G Y+IL++ Sbjct: 121 ISNESPVGQAIMGQKVGSVVEVNVPAGILKYKILEIK 157 >gi|294673245|ref|YP_003573861.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] gi|294472262|gb|ADE81651.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] Length = 155 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 86/151 (56%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + + P AISEAR GDLSEN EY AAK Q GR++ Sbjct: 3 YMSQEGWDKLVAELKQLETVDLPACKDAISEARDKGDLSENFEYHAAKREQGRLLGRISF 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A VID S + D + + V + N+ K Y I EA+++ G +SI SP Sbjct: 63 LQKVLENARVIDTSLLGKDCVGLLSKVEMTNLNNNAKMTYTIASPHEANLREGKISIKSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+AL+ K++GD++ V P G +I + Sbjct: 123 IAQALLNKKVGDVVEVRVPAGMVKLKIENIT 153 >gi|228993117|ref|ZP_04153039.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM 12442] gi|229006713|ref|ZP_04164347.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4] gi|228754574|gb|EEM03985.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4] gi|228766576|gb|EEM15217.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM 12442] Length = 161 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161 >gi|15896445|ref|NP_349794.1| transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|25453001|sp|Q97EB6|GREA_CLOAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|15026268|gb|AAK81134.1|AE007815_4 Transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|325510603|gb|ADZ22239.1| transcription elongation factor GreA [Clostridium acetobutylicum EA 2018] Length = 158 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 91/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T KG K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR Sbjct: 5 KKYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAFVEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++EN++ A VID S + D ++ G+ V + + ++ + IVG EAD +S Sbjct: 65 IAQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++GD I VN P G Y+IL + Sbjct: 125 ESPVGSALIGKKVGDEIEVNVPDGVDKYKILAIK 158 >gi|152972284|ref|YP_001337430.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896873|ref|YP_002921618.1| transcription elongation factor GreB [Klebsiella pneumoniae NTUH-K2044] gi|262045242|ref|ZP_06018268.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012470|ref|ZP_08307384.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3] gi|150957133|gb|ABR79163.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549200|dbj|BAH65551.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037452|gb|EEW38697.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533821|gb|EGF60500.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3] Length = 157 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+ Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDIKRFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE ++ + ++ ++ Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156 >gi|229088223|ref|ZP_04220162.1| Transcription elongation factor greA [Bacillus cereus Rock3-44] gi|228695096|gb|EEL48133.1| Transcription elongation factor greA [Bacillus cereus Rock3-44] Length = 161 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 94/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 10 YPMTLEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S Sbjct: 70 QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161 >gi|326693573|ref|ZP_08230578.1| transcription elongation factor greA [Leuconostoc argentinum KCTC 3773] Length = 160 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G +K+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKVFPMTAEGREKLQAELEDLISNQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G Sbjct: 61 VEGRILTLKKMIENAEIIDPNATASDEVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S S +A AL+GK++GD ++V P G+ EIL+V Sbjct: 121 KISNESAMAVALLGKKVGDKVAVPLPSGDSIEVEILKVE 159 >gi|325274307|ref|ZP_08140416.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51] gi|324100565|gb|EGB98302.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51] Length = 157 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +TS+G +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITSEGHAALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DDGETMKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K+ GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKQEGDEVLVHTPTGEATWYVNSISY 155 >gi|241762247|ref|ZP_04760329.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753827|ref|YP_003226720.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856510|ref|YP_163350.2| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ZM4] gi|7387716|sp|O50237|GREA_ZYMMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3820585|gb|AAC70357.1| transcription elongation factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373294|gb|EER62913.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553190|gb|ACV76136.1| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775514|gb|AAV90239.2| transcription elongation factor GreA [Zymomonas mobilis subsp. mobilis ZM4] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KIP+ +G + EL ERP+II AI EARA+GDLSENAEY AAKE Q E Sbjct: 5 EKIPMLIEGQQMLMDELARL-HAERPKIIDAIEEARAHGDLSENAEYHAAKERQGQVEAM 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++E ++RA VID T+SGD++ FGATV L++++ K YQIVG EA+ + G +S Sbjct: 64 IGDIEGKLSRALVIDPKTLSGDKVIFGATVHLLDEDDKPVK-YQIVGQTEANAKGGRISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++ D I V+ P G++ Y I ++ +I Sbjct: 123 NSPLGRALIGRKVDDEIEVSVPSGDRYYLISKIEFI 158 >gi|239817299|ref|YP_002946209.1| transcription elongation factor GreB [Variovorax paradoxus S110] gi|239803876|gb|ACS20943.1| transcription elongation factor GreB [Variovorax paradoxus S110] Length = 190 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ Sbjct: 30 KNYMTPAGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV D S G D++ FGATV V+ +GD+++ I+G EAD VS Sbjct: 90 RFLTKRLEIAEVTDPSVHHGSDQVFFGATVRYVD-ETGDERSVTILGIDEADSAQSQVSW 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ GD++ + PGG E+L V + Sbjct: 149 ISPIARALLKSREGDVVKLVTPGGAHEVELLSVSY 183 >gi|254507342|ref|ZP_05119478.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16] gi|219549802|gb|EED26791.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16] Length = 160 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D S ++ FGA V + ++ GD K+++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENED-GDVKSFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D SV P G K + + ++ + Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGFKDWFVNRIDY 156 >gi|148263835|ref|YP_001230541.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4] gi|146397335|gb|ABQ25968.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++ EL + + ERPR+ +A+S+A A GD SENAEY K+ + R+ Sbjct: 14 YITPEGAKCLRDELDYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDRRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ +I FGA V L E GD+ Y+IVG E DV G +S+ SP Sbjct: 74 LIKRLDALTVVNNQPERQGKIFFGAWVRL-ETEDGDEVVYRIVGPDEFDVAKGFISMDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK+ GD + V P G T+ +L + + Sbjct: 133 VGRALLGKQEGDEVVVRRPAGATTFTVLDISY 164 >gi|119357650|ref|YP_912294.1| transcription elongation factor GreA [Chlorobium phaeobacteroides DSM 266] gi|166200656|sp|A1BHJ3|GREA_CHLPD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119354999|gb|ABL65870.1| transcription elongation factor GreA [Chlorobium phaeobacteroides DSM 266] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 102/156 (65%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL ++R +++ I+EARA+GDLSENAEY AA+E Q+L E Sbjct: 1 MNDRIYLTRDGYNRLKEELYVLVHQKRKEVLEKIAEARAHGDLSENAEYDAAREEQSLTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN-SGDKKNYQIVGDQEADVQSGL 119 +A+LEN ++ A ++D + D++ +V L + + G+ Y +V +EAD G Sbjct: 61 AHIADLENKLSTATILDPKQVKTDKVYILTSVKLRDLDKEGEIIEYTLVSSEEADTDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ RALIGK +G+ + + P GE YEIL++ Sbjct: 121 ISVRSPVGRALIGKTVGEKVQIMVPKGELHYEILEI 156 >gi|259046507|ref|ZP_05736908.1| transcription elongation factor GreA [Granulicatella adiacens ATCC 49175] gi|259036672|gb|EEW37927.1| transcription elongation factor GreA [Granulicatella adiacens ATCC 49175] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MTEKVFPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR++ LE +I AE+ID + + D ++ G V+ +E GD++ Y IVG EA+ G Sbjct: 61 EGRISTLEKMIRFAEIIDDNNVEKDIVSLGRKVTFIELPDGDEETYTIVGSAEANPIEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ +IGK+L + + + PGGE I+ + Sbjct: 121 ISNDSPIAKGIIGKKLNEEVVIPTPGGEMKIRIIDIQ 157 >gi|189347164|ref|YP_001943693.1| transcription elongation factor GreA [Chlorobium limicola DSM 245] gi|238692161|sp|B3EE12|GREA_CHLL2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189341311|gb|ACD90714.1| transcription elongation factor GreA [Chlorobium limicola DSM 245] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLIHQTRKEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119 R+A+LEN ++ A ++D + D++ +V L D+ Y +V +EAD G Sbjct: 61 ARIADLENKLSTATILDPKLIKTDKVYILTSVKLKNLQVEDEVIEYTLVSSEEADTDLGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ R+LIGK +GD + + P GE +EIL + Sbjct: 121 ISVRSPVGRSLIGKTVGDKVHITVPKGELHFEILDI 156 >gi|163802294|ref|ZP_02196188.1| transcription elongation factor GreA [Vibrio sp. AND4] gi|159173823|gb|EDP58637.1| transcription elongation factor GreA [Vibrio sp. AND4] Length = 157 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+TS+G +++ + R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTSRG-EQLLRTELERLLKLRPQISQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEFKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD + + PGG K +EI V +I Sbjct: 120 SVSSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157 >gi|94309804|ref|YP_583014.1| transcription elongation factor GreB [Cupriavidus metallidurans CH34] gi|93353656|gb|ABF07745.1| Transcription elongation factor [Cupriavidus metallidurans CH34] Length = 186 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T+ G+ +++ EL ERP I++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITAAGYKRLRDELMHLIDVERPDIVQIVSWAASNGDRSENGDYLYGKKRMREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + +AEV+D S D+I FGATV+ + SG++ IVG E D+ S VS Sbjct: 89 RFLTRRLDKAEVVDPSMQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDSNHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALI GD + + P G + +IL+V + Sbjct: 148 ISPIAKALIKAREGDTVPLRTPAGIEQIDILEVRY 182 >gi|311107031|ref|YP_003979884.1| transcription elongation factor GreB [Achromobacter xylosoxidans A8] gi|310761720|gb|ADP17169.1| transcription elongation factor GreB [Achromobacter xylosoxidans A8] Length = 183 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 28 KNYMTPGGYERLRSELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + D++ FGAT L +G++ N IVG EA+ +G +S Sbjct: 88 RFLTKRLDIAEVVDPAAQPNRDQVFFGAT-VLYSDKAGEEHNVTIVGVDEAEPLAGKISW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI + GD + + PGG + +IL V + Sbjct: 147 ISPVARALIKAKEGDTVVLRTPGGIEELDILDVSY 181 >gi|205354873|ref|YP_002228674.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274654|emb|CAR39708.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630019|gb|EGE36362.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D S ++ F A V + + GD ++IVG E + +SI SP+ Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFSAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ KE+GD+ VN P GE + + + ++ Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156 >gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM 9941] gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM 9941] Length = 154 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF K+Q+EL++ + R + + I +AR +GD+SEN+EY AK Q L E R++EL Sbjct: 1 MTPEGFAKLQEELKYLTEVRRKEVAERIRQAREFGDISENSEYDDAKNEQGLLERRISEL 60 Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + A+++D S+ + G V+L G ++ +QIVG EAD SG +S +SP Sbjct: 61 QRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHASP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+ + +G+ + V+ P G YEI+ V Sbjct: 121 VGKALLRRRVGEKVRVSTPRGATEYEIVSVE 151 >gi|254241524|ref|ZP_04934846.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192] gi|126194902|gb|EAZ58965.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192] Length = 168 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL P++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGAARLRAELHELWHVRCPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+ Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V P GEK + ++++ + Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164 >gi|302876582|ref|YP_003845215.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|307687257|ref|ZP_07629703.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302579439|gb|ADL53451.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] Length = 158 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 89/155 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K++ EL + + R I + I A ++GDLSEN+EY AK Q EG Sbjct: 3 SKKYVMTYEGLKKLEDELEFLKTVRRNDIKEKIKVALSFGDLSENSEYDEAKNEQAFVEG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+LE ++ + V+D + + GD + G V + + +SGD Y IVG EAD +S Sbjct: 63 KIAQLEAMLKKVTVVDETDIQGDIVGIGTKVKVKDIDSGDVDVYSIVGSAEADPLEFKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A++GK++G+ + V P G EIL++ Sbjct: 123 HESPVGKAMLGKKVGETVDVAVPDGTIKLEILEIT 157 >gi|219872157|ref|YP_002476532.1| transcription elongation factor GreB [Haemophilus parasuis SH0165] gi|219692361|gb|ACL33584.1| transcription elongation factor GreB [Haemophilus parasuis SH0165] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQVLDQELKYLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L + G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPTQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFDPAKQWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I V P G+ T I ++ + Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPVGKVTLYINKIWY 156 >gi|303249748|ref|ZP_07335952.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251936|ref|ZP_07533837.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651315|gb|EFL81467.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860628|gb|EFM92640.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 162 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MTKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|149277461|ref|ZP_01883602.1| transcription elongation factor [Pedobacter sp. BAL39] gi|149231694|gb|EDM37072.1| transcription elongation factor [Pedobacter sp. BAL39] Length = 157 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T G DK+++EL + R I KAI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MTEVTYYTQDGLDKLKEELHHMKTTGRQLISKAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G + Sbjct: 61 AKIAKLETTLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPIA+ L+GK +GD + P G+ +EIL++ Sbjct: 121 SVKSPIAQGLLGKSVGDKTEIQVPAGKIEFEILEIS 156 >gi|260913554|ref|ZP_05920031.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC 43325] gi|260632330|gb|EEX50504.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC 43325] Length = 164 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + Sbjct: 6 MVKSNYITRTGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 65 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D + Sbjct: 66 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALENEE-GEEKQYRIVGCDEFDPAKNWI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D I VN P G + + ++ + Sbjct: 125 SIDSPVARALIGKAVDDEIKVNTPSGVVIFYVNRIWY 161 >gi|261250558|ref|ZP_05943133.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891] gi|260939127|gb|EEX95114.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D++++EL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYDRLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D S ++ FGA V + ++ GD K ++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENED-GDTKAFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D SV P G K + + + + Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGFKEWFVNSIRY 156 >gi|149378112|ref|ZP_01895832.1| transcription elongation factor GreB [Marinobacter algicola DG893] gi|149357597|gb|EDM46099.1| transcription elongation factor GreB [Marinobacter algicola DG893] Length = 156 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 96/156 (61%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +G+ ++QQEL + ++ERP + K + A + GD SENA+YQ K+ + Sbjct: 1 MNTNVITPEGYAELQQELDYLWRKERPEVTKKVQWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L N +++ V++ +++ ++ FGA V+LV+++ ++++VG E + VS Sbjct: 61 RVRYLRNRLSKLRVVEYNSVQEGKVYFGAWVTLVDED-EKTLSFRMVGPDEIYGKKNYVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++P+A+A +GK +GD + V P ++ ++I ++ + Sbjct: 120 VNAPVAKACLGKSVGDTVVVRTPENQREWDISKIEY 155 >gi|307249608|ref|ZP_07531594.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858306|gb|EFM90376.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 162 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTHAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|164686645|ref|ZP_02210673.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM 16795] gi|164604374|gb|EDQ97839.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM 16795] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K +T +G++K+++EL + + +R + + + A ++GDLSENAEY AK Q Sbjct: 1 MVEKQELLTQEGYNKLEEELEYLKAVKRKEVAERLKVAISFGDLSENAEYDEAKNEQAKL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E ++ +L+ + +A +ID S + + + G+ V + + + ++ Y IVG EAD G Sbjct: 61 EEQILKLDEKLRKAVIIDESQIDLNIVTVGSIVKVFDFDFDEEVEYVIVGSAEADPFEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+G +G+ + V P G +++L++ Sbjct: 121 ISNESPVGKALLGARVGETVEVQVPDGVSKFKVLEIR 157 >gi|220927851|ref|YP_002504760.1| transcription elongation factor GreA [Clostridium cellulolyticum H10] gi|219998179|gb|ACL74780.1| transcription elongation factor GreA [Clostridium cellulolyticum H10] Length = 158 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 89/155 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EG Sbjct: 3 AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S Sbjct: 63 RIVQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDEEVEYLIVGSTEANPLKSKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIG G+ + V P G ++IL++ Sbjct: 123 NESPVGAALIGHTKGETVEVQVPDGVLKFKILEIS 157 >gi|269792851|ref|YP_003317755.1| transcription elongation factor GreA [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100486|gb|ACZ19473.1| transcription elongation factor GreA [Thermanaerovibrio acidaminovorans DSM 6589] Length = 164 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 97/154 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R Sbjct: 9 EQVIMTREGYEKLKQELASLRGDGRSEIASKLEEARAFGDLSENAEYHAAKEEQEKLESR 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE +++A+V++ S + ++ GATV L + ++G+ Y +VG +EAD ++ +S Sbjct: 69 IMWLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISA 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A+IG+ G+ + V P G + I ++ Sbjct: 129 QSPVGKAIIGRAEGEEVIVRVPKGTRHLRIERIS 162 >gi|227538368|ref|ZP_03968417.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33300] gi|227241883|gb|EEI91898.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33300] Length = 157 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 101/156 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +G DK+++EL + E R I KAI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MAEVTYYNQEGLDKLKEELHHLKTEGRANIAKAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE++++ A +ID S + ++ + V + K +G + YQ+V + EAD++SG + Sbjct: 61 AKIAKLEDVLSSARLIDESKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPIA+ L+GK GD ++ P G+ +EI+++ Sbjct: 121 SVKSPIAQGLLGKSKGDTATIEVPAGKIEFEIMEIS 156 >gi|209694181|ref|YP_002262109.1| transcription elongation factor GreA [Aliivibrio salmonicida LFI1238] gi|208008132|emb|CAQ78274.1| transcription elongation factor GreA [Aliivibrio salmonicida LFI1238] Length = 157 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTIRGEKLLRDELEVLLK-RRPVISKAIGEARELGDLKENAEYHAAREDQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FGATV+L++ ++ DK YQIV D EA+++ G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGATVTLLDVDTEDKVKYQIVADDEANIKEGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK + D +S+ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKLVEDEVSIRTPGGTKEFEIDAVEYI 157 >gi|323527030|ref|YP_004229183.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001] gi|323384032|gb|ADX56123.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001] Length = 189 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL EERP +++ +S A + GD SEN +Y K + R+ Sbjct: 29 KNYITPAGYRRMRDELLHLIDEERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV G++ IVG E D+ G VS Sbjct: 89 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYA-TEDGEEHTVTIVGIDEVDLDVGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182 >gi|332520122|ref|ZP_08396586.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4] gi|332044681|gb|EGI80875.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4] Length = 157 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K+++EL+ + ER + AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTAEGLKKLREELKHLKDVERVKASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE+ + A +ID S M +I + V + + +G + NY +V D EAD+ SG + Sbjct: 61 MRISKLEDQLAGARIIDESQMDTSKILVLSKVKIKNQTNGMEMNYTLVADGEADLASGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +GD+ ++ P G ++I+++ Sbjct: 121 SVNSPIGKGLLGKSVGDVAEISVPSGIMKFDIIEIS 156 >gi|260583976|ref|ZP_05851724.1| transcription elongation factor GreA [Granulicatella elegans ATCC 700633] gi|260158602|gb|EEW93670.1| transcription elongation factor GreA [Granulicatella elegans ATCC 700633] Length = 159 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q Sbjct: 1 MTEKLYPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE +I AE+ID + + D ++ G ++ +E G++++Y IVG EA+ G Sbjct: 61 EGRITTLEKMIRFAEIIDDNNVEKDVVSLGRKITFIELPDGEEESYTIVGSAEANPIEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ +IGK+L D + + PGG+ +I ++ Sbjct: 121 ISNDSPIAKGIIGKKLNDEVVIQTPGGDMKVKITKIE 157 >gi|146307584|ref|YP_001188049.1| transcription elongation factor GreB [Pseudomonas mendocina ymp] gi|145575785|gb|ABP85317.1| transcription elongation factor GreB [Pseudomonas mendocina ymp] Length = 165 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V++ +++ G++ Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEKLKVVSDRPSDPNKVYFGAWVTIEDED-GEQSRYRIVGPDELDLKQGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GK L + V++P GEKT I+++ + Sbjct: 134 ARALVGKPLDAEVRVHSPSGEKTCYIVEIEY 164 >gi|86146554|ref|ZP_01064876.1| transcription elongation factor GreB [Vibrio sp. MED222] gi|85835611|gb|EAQ53747.1| transcription elongation factor GreB [Vibrio sp. MED222] Length = 160 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G + Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE D +V P G+K + I + + Sbjct: 120 SIDSPMARALLKKETDDEFTVTTPEGDKEWFINSIRY 156 >gi|307730694|ref|YP_003907918.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307585229|gb|ADN58627.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 206 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 46 KNYITPAGYRRMRDELLQLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV G++ IVG E D+ G VS Sbjct: 106 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYA-TEDGEEHTVTIVGIDEVDLDIGHVSW 164 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 165 ISPIARALLKGKVGDTVTLYTPAGPQPIDILDVKY 199 >gi|255657691|ref|ZP_05403100.1| transcription elongation factor GreA [Mitsuokella multacida DSM 20544] gi|260849878|gb|EEX69885.1| transcription elongation factor GreA [Mitsuokella multacida DSM 20544] Length = 156 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G++K+ ++L + + +R I + + A A GDLSEN+EY AK Q Sbjct: 1 MADKQVMLTEEGYNKLVEKLNYLKSVKRIEIAQRLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + +L I + +I +GD + G+ V++ + GD++ + +VG EAD G Sbjct: 61 EGEIQDLTAKIRNSHII--KAGAGDVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+G++ G +I V+AP G YEIL + Sbjct: 119 ISNESPLGQALLGQKSGSVIDVHAPAGIIKYEILDIK 155 >gi|194334369|ref|YP_002016229.1| transcription elongation factor GreA [Prosthecochloris aestuarii DSM 271] gi|238693346|sp|B4S9B2|GREA_PROA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|194312187|gb|ACF46582.1| transcription elongation factor GreA [Prosthecochloris aestuarii DSM 271] Length = 160 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T +G+++++ EL + R +++ I+EARA+GDLSENAEY+AA+E Q E Sbjct: 1 MSDRIYLTKQGYNRMRDELNLLKTVVRKEVLEKIAEARAHGDLSENAEYEAAREQQAQME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN--SGDKKNYQIVGDQEADVQSG 118 ++ +LEN +TRA ++D + DR+ +V L + + Y +V +EAD G Sbjct: 61 SKIVDLENKLTRASILDPKQIRTDRVYILTSVKLRNLDETDDEIIEYTLVSSEEADTDQG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ +ALIGK +G+ + ++ P GE YEIL++ Sbjct: 121 KISVRSPVGKALIGKAVGEKVQIHVPKGELHYEILEI 157 >gi|258623151|ref|ZP_05718162.1| transcription elongation factor GreA [Vibrio mimicus VM573] gi|258625329|ref|ZP_05720229.1| transcription elongation factor GreA [Vibrio mimicus VM603] gi|258582395|gb|EEW07244.1| transcription elongation factor GreA [Vibrio mimicus VM603] gi|258584571|gb|EEW09309.1| transcription elongation factor GreA [Vibrio mimicus VM573] Length = 158 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +++ PGG+K +EI +V ++ Sbjct: 120 ISVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 158 >gi|78188473|ref|YP_378811.1| transcription elongation factor GreA [Chlorobium chlorochromatii CaD3] gi|123770883|sp|Q3ATA7|GREA_CHLCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|78170672|gb|ABB27768.1| GreA/GreB family elongation factor [Chlorobium chlorochromatii CaD3] Length = 160 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D+I +T+ G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E Sbjct: 1 MNDRIYLTNDGYNRLKEELYVLVHQTRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119 R+ +LE+ ++ A ++D + D++ +V L ++ + Y +V +EAD +G Sbjct: 61 ARIGDLESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SP+ R+LIGK +G +++ P GE YEIL++ Sbjct: 121 ISVRSPVGRSLIGKTVGAKVTIVVPKGELHYEILEI 156 >gi|229846659|ref|ZP_04466767.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] gi|229810752|gb|EEP46470.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] gi|309972280|gb|ADO95481.1| Transcription elongation factor GreB [Haemophilus influenzae R2846] Length = 162 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++++ QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWNELDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|73542156|ref|YP_296676.1| transcription elongation factor GreB [Ralstonia eutropha JMP134] gi|72119569|gb|AAZ61832.1| transcription elongation factor GreB [Ralstonia eutropha JMP134] Length = 188 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T+ G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITADGYNRLRNELMHLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + +AEV+D S D+I FGATV+ + SG++ IVG E D+ + VS Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDTNHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALI GD +++ P G + +IL V + Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILDVSY 182 >gi|330815852|ref|YP_004359557.1| Transcription elongation factor [Burkholderia gladioli BSR3] gi|327368245|gb|AEA59601.1| Transcription elongation factor [Burkholderia gladioli BSR3] Length = 186 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S S D++ FGATV G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQESADQVFFGATVDYA-TEDGEDHTITIVGVDEVDLDHGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ +GD +++ P G + ++L V + Sbjct: 147 VSPIARALLKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|241895036|ref|ZP_04782332.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313] gi|241871754|gb|EER75505.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313] Length = 161 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G KI++EL E R I I AR++GDLSEN+EY +AK+ Q Sbjct: 1 MAEEKTFPMTLEGKAKIEEELNTLITETRSEITGRIQLARSFGDLSENSEYASAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N++ AE+ID S ++ D +A G V+ E + ++Y IVG EA+ G Sbjct: 61 VEGRIKTLQNMLDNAEIIDSSEIADDEVAVGKKVTFKELPDEEPESYSIVGAVEANPSEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +S SPIA ALIG ++GD +SV P G + EIL V Sbjct: 121 KISNESPIAAALIGHKVGDTVSVTLPNGFDMEIEILSVE 159 >gi|327480631|gb|AEA83941.1| transcription elongation factor GreB [Pseudomonas stutzeri DSM 4166] Length = 165 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L +++ G + Y+IVG E D++ G++SI SP+ Sbjct: 75 TKRLEKLKVVSERPGDPNKVYFGAWVTLEDED-GAQARYRIVGPDELDLRQGMISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GK L + V P G K + ++ + + Sbjct: 134 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 164 >gi|229845698|ref|ZP_04465821.1| transcription elongation factor GreB [Haemophilus influenzae 6P18H1] gi|229811384|gb|EEP47090.1| transcription elongation factor GreB [Haemophilus influenzae 6P18H1] Length = 162 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >gi|253690269|ref|YP_003019459.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756847|gb|ACT14923.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 163 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120 R+ L +T +++D S + FGA V + GD K +IVG E + + Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDNKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARA++ K + + +VN P G + + + + ++ Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157 >gi|312134579|ref|YP_004001917.1| grea/greb family elongation factor [Caldicellulosiruptor owensensis OL] gi|311774630|gb|ADQ04117.1| GreA/GreB family elongation factor [Caldicellulosiruptor owensensis OL] Length = 162 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 92/153 (60%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++GD Y IVG +E+D + +S Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIVEYSIVGSKESDPLNFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD++ V P G+ Y+IL++ Sbjct: 129 SPVGKALMGKKVGDVVEVIVPAGKFRYKILEIS 161 >gi|301155419|emb|CBW14885.1| transcription elongation factor [Haemophilus parainfluenzae T3T1] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L ++ G+ K Y++VG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEE-GEVKQYRLVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK + D I V P G+ + ++ + Sbjct: 120 SIDSPVARALIGKGVDDEIHVETPSGKVVLYVNRIWY 156 >gi|146299350|ref|YP_001193941.1| transcription elongation factor GreA [Flavobacterium johnsoniae UW101] gi|189042241|sp|A5FJJ8|GREA_FLAJO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|146153768|gb|ABQ04622.1| transcription elongation factor GreA [Flavobacterium johnsoniae UW101] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 94/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T+ G K++ EL + RP+ + I++AR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTADGLKKLKDELEHLKSVMRPKASQDIADARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE + A +ID S + ++ + V + +++G + Y +V + EAD+++G + Sbjct: 61 MRIAKLEEVYANARLIDESQLDVSKVLVLSNVKIKNQSNGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +G+I + P G +EIL++ Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGTLKFEILEIT 156 >gi|330813686|ref|YP_004357925.1| transcription elongation factor GreA [Candidatus Pelagibacter sp. IMCC9063] gi|327486781|gb|AEA81186.1| transcription elongation factor GreA [Candidatus Pelagibacter sp. IMCC9063] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G +KI+ EL R+ R +I+ AISEAR++GDL ENAEY AAKE Q LNE Sbjct: 1 MEKEPITIQGLEKIKSELDDRKHTTRSKIVMAISEARSHGDLKENAEYHAAKEEQGLNEK 60 Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I AEVIDI + D + F +T+ + + + K Y+IVG EADV++GL+ Sbjct: 61 RIQELETSIAMAEVIDIRKIPNDNKVIFSSTIIVKDLDGDKKNTYKIVGRDEADVKNGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ R IGK D + + P GEK +EIL V +I Sbjct: 121 YYKSPLGRGFIGKNKEDFVVIETPSGEKNFEILDVKYI 158 >gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] Length = 178 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 88/155 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K +T +G ++++EL + R I + I EAR GDLSENAEY AAK+ Q E Sbjct: 22 IMTKNVMTYEGLQELEKELEHLKVNRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDIE 81 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E I+ AEV + G+T +L++ ++ Y++VG EA+ G + Sbjct: 82 ARIEEIEKILKNAEVFLEEDAEKGTVNLGSTFTLLDMEYDEEIVYKLVGATEANSLEGKI 141 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ RAL G + GDI+ V P G Y+++++ Sbjct: 142 SNESPVGRALKGAKEGDIVEVETPAGTLQYKVIKI 176 >gi|190149679|ref|YP_001968204.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245216|ref|ZP_07527307.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307262987|ref|ZP_07544609.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914810|gb|ACE61062.1| transcription elongation factor GreB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853860|gb|EFM86074.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306871613|gb|EFN03335.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 162 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156 >gi|295396925|ref|ZP_06807049.1| transcription elongation factor GreA [Aerococcus viridans ATCC 11563] gi|294974859|gb|EFG50562.1| transcription elongation factor GreA [Aerococcus viridans ATCC 11563] Length = 159 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +++ P+T +G +KIQQ+L + +R I++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEEVYPMTQEGLEKIQQDLDELKIVKRKEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ +LE ++ A++ID + + ++ G V+ +E GD++ Y IVG EAD G Sbjct: 61 EGQIQKLEKMVRYAKIIDPNEIDEGIVSLGRKVTFIELPDGDEEVYSIVGRAEADPLDGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK + D +++ PGG+ +I V Sbjct: 121 ISNESPIAQALIGKGVNDEVTIETPGGDMVVKITSV 156 >gi|229013597|ref|ZP_04170728.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048] gi|229062075|ref|ZP_04199400.1| Transcription elongation factor greA [Bacillus cereus AH603] gi|229169123|ref|ZP_04296838.1| Transcription elongation factor greA [Bacillus cereus AH621] gi|228614351|gb|EEK71461.1| Transcription elongation factor greA [Bacillus cereus AH621] gi|228717227|gb|EEL68902.1| Transcription elongation factor greA [Bacillus cereus AH603] gi|228747656|gb|EEL97528.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048] Length = 175 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S Sbjct: 84 QLENMIRNAVIIEDNGEESTVVTLGKTVIFKELPGGDEEAYIIVGSAEADPFEGRISNDS 143 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA++L+GK++G+ +++ PGGE EI+ V Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175 >gi|307721519|ref|YP_003892659.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] gi|306979612|gb|ADN09647.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM 16294] Length = 174 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 97/154 (62%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ +G+DK+ +E ++ + E+P++ A A GD SENA+YQAAKE + R+ Sbjct: 2 KEPMSIEGYDKLIEEFKYLLEVEKPKVAHEKLVAAALGDRSENADYQAAKEKLRFIDKRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I + +ID S ++AFG++V+LV ++ D++ Y I G E++ ++GL+SI Sbjct: 62 FYLNKMIQSSHIIDPSLHEHKQVAFGSSVTLVNIDTEDEEIYTICGVLESEPENGLISIH 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+A++GK+ GD + P K YEI ++ + Sbjct: 122 SPLAKAMLGKKEGDEFKIQLPNALKEYEIQKIKY 155 >gi|304397825|ref|ZP_07379701.1| GreA/GreB family elongation factor [Pantoea sp. aB] gi|304354536|gb|EFM18907.1| GreA/GreB family elongation factor [Pantoea sp. aB] Length = 157 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIEN-DEGDLKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD +V P G + + + + Sbjct: 120 IDSPMARALLKKEVGDAATVETPVGPALWYVNAIDY 155 >gi|308188422|ref|YP_003932553.1| Transcription elongation factor greB [Pantoea vagans C9-1] gi|308058932|gb|ADO11104.1| Transcription elongation factor greB [Pantoea vagans C9-1] Length = 157 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIEN-DEGDLKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD +V P G + + + + Sbjct: 120 IDSPMARALLKKEVGDAATVETPLGPALWYVNAIDY 155 >gi|330808345|ref|YP_004352807.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376453|gb|AEA67803.1| putative Transcription factor, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ E RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARMRAEFHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ +++ FGA V++ +++ G + Y+IVG E D++ L+SI SP+ Sbjct: 75 TKRLEALKVVSEKPSDPNKVYFGAWVTVEDED-GKESRYRIVGPDELDLKQNLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK L +SV P GEK I+ + + Sbjct: 134 ARALIGKALDAEVSVQTPTGEKRVYIVDIAY 164 >gi|16272512|ref|NP_438726.1| transcription elongation factor GreB [Haemophilus influenzae Rd KW20] gi|260581015|ref|ZP_05848838.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] gi|1170017|sp|P43882|GREB_HAEIN RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd KW20] gi|260092374|gb|EEW76314.1| transcription elongation factor GreB [Haemophilus influenzae RdAW] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >gi|222151496|ref|YP_002560652.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402] gi|254799561|sp|B9E6Y8|GREA_MACCJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222120621|dbj|BAH17956.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T +GFDK++ EL + RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 3 MQKEYPMTQEGFDKLEVELEHLKTVRRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFVE 62 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ++E ++ A +I+ S + G TV+ E ++++Y+IVG EAD G + Sbjct: 63 QEITKIEMMLRHAVIIE-DDGSKSEVQIGRTVTFAEVPGNEEESYKIVGSAEADPFEGKI 121 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S SPIA+AL+GK++GD ++V P G E +I+++ Sbjct: 122 SNESPIAKALLGKKVGDEVNVPLPNGNEMRVKIVEIS 158 >gi|325576611|ref|ZP_08147329.1| transcription elongation factor GreB [Haemophilus parainfluenzae ATCC 33392] gi|325161174|gb|EGC73289.1| transcription elongation factor GreB [Haemophilus parainfluenzae ATCC 33392] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L ++ G+ K Y++VG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEE-GEVKQYRLVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK++ D I V P G+ + ++ + Sbjct: 120 SIDSPVARALIGKDVDDEIHVETPSGKVVLYVNRIWY 156 >gi|163802255|ref|ZP_02196150.1| transcription elongation factor GreB [Vibrio sp. AND4] gi|159174060|gb|EDP58870.1| transcription elongation factor GreB [Vibrio sp. AND4] Length = 161 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D S ++ FGA V + +GD K ++IVG +E G + Sbjct: 61 RVRFLRKFLPEVKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKQFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARAL+ KE+ D I+V P G+K + I + ++ Sbjct: 120 SIDSPMARALLKKEVDDEITVRTPEGDKEWFINSITYM 157 >gi|326336154|ref|ZP_08202326.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691663|gb|EGD33630.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 156 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEL 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+LE ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S Sbjct: 61 KIAKLEELVANARVIDESQLDTSKVLILSTVKLKNKANNAIMTYTLVAESEADLKAGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SSPI R L+GK +GDI + P G EI+++ Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGVLQMEIIEIK 155 >gi|296111138|ref|YP_003621519.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU 11154] gi|295832669|gb|ADG40550.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU 11154] Length = 160 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKVFPMTAEGRDKLQTELEDLITRQRPEITTRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D SG Sbjct: 61 VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPDEEAETYAIVGSTESDPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S S +A ALIGK++GD ++V P G+ T EIL+V Sbjct: 121 KISNESAMAVALIGKKVGDKVAVPLPSGDNITVEILKVE 159 >gi|217077586|ref|YP_002335304.1| transcription elongation factor GreA [Thermosipho africanus TCF52B] gi|226737011|sp|B7ID86|GREA_THEAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|217037441|gb|ACJ75963.1| transcription elongation factor GreA [Thermosipho africanus TCF52B] Length = 156 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R Sbjct: 4 ESIYLTKEGYEKLKAELDQLKQKLMFEIAQRIKEARELGDLSENSEYQEAKNEQGRIAAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELEN++++AEVI+ + + I G V + ++G++K QIV EADV + +S Sbjct: 64 INELENMLSKAEVIEG--LDTNVINIGNWVLIKNLDTGEEKTIQIVTPHEADVFNNKISF 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI R L+GK++G+++ + AP G Y+IL + Sbjct: 122 ESPIGRVLVGKKVGEVVKIKAPKGVFKYQILGIK 155 >gi|330503584|ref|YP_004380453.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01] gi|328917870|gb|AEB58701.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01] Length = 165 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 95/151 (62%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V++ +++ G++ Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEKLKVVSEKPSDPNKVYFGAWVTIEDED-GEQSRYRIVGPDELDLKQGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V++P GEKT I+++ + Sbjct: 134 ARALVGKELDAEVRVHSPSGEKTCYIVEIGY 164 >gi|222110079|ref|YP_002552343.1| transcription elongation factor greb [Acidovorax ebreus TPSY] gi|221729523|gb|ACM32343.1| transcription elongation factor GreB [Acidovorax ebreus TPSY] Length = 186 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + Sbjct: 25 ASKNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDR 84 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD + Sbjct: 85 RIRFLTKRLEIADVVDPSVHTGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQI 143 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+ARAL+ GD +++ P G +T EIL+V + Sbjct: 144 SWISPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180 >gi|89889854|ref|ZP_01201365.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium BBFL7] gi|89518127|gb|EAS20783.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium BBFL7] Length = 158 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + T +GF K++ EL+ + ERPR +AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSNVSYYTEEGFKKLKDELKQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++LE +++ A +ID S + ++ + V + N+ NY++V E+D+ GL+ Sbjct: 61 MRISKLEAVVSNARIIDESDLDLSKVLIHSNVKIKNLNNKMVMNYKLVAQSESDITKGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI +AL+GKE+G++ P G EI+++ Sbjct: 121 SVDSPIGKALLGKEVGEVAEAVVPVGTIKLEIMEIS 156 >gi|288555392|ref|YP_003427327.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4] gi|288546552|gb|ADC50435.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4] Length = 158 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 2/157 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q Sbjct: 1 MAEEKKHYMTEDGKRKLEEELEFLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+A+LE +I A +I+ S ++ G V +E GD++ Y IVG E+D G Sbjct: 61 VEGRIAQLEKMIRNAVMIEEEAGSSHAVSLGKRVKFIELPDGDEEEYTIVGSAESDPAEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A++++G+ +GD ++VN P GE EIL++ Sbjct: 121 KISNDSPMAQSILGRSVGDKVTVNTPAGEMKIEILEI 157 >gi|262274892|ref|ZP_06052703.1| transcription elongation factor GreA [Grimontia hollisae CIP 101886] gi|262221455|gb|EEY72769.1| transcription elongation factor GreA [Grimontia hollisae CIP 101886] Length = 157 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+T +G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MDKVPMTVRG-EQLLRDELDRLLKRRPLITQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M + ++ FGATV+L++ ++ ++ YQIVGD EAD + L+ Sbjct: 60 QIRDIEYKLSVAQVIDIAKMPNNGKVIFGATVTLIDCHTDEEVTYQIVGDDEADFKKNLI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGKE GD +++ PGG K +EI V +I Sbjct: 120 SVNSPIARGLIGKEEGDEVAITVPGGVKEFEIESVKYI 157 >gi|251793288|ref|YP_003008016.1| transcription elongation factor GreB [Aggregatibacter aphrophilus NJ8700] gi|247534683|gb|ACS97929.1| transcription elongation factor GreB [Aggregatibacter aphrophilus NJ8700] Length = 159 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWNVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D S +I FGA V L ++ G+ K Y++VG E D + Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQEGKIFFGAWVELENED-GEVKQYRLVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE D I+V+ P G+ + ++ + Sbjct: 120 SIDSPVARALIGKEEEDEITVDTPSGKIQLYVNRIWY 156 >gi|222099868|ref|YP_002534436.1| Transcription elongation factor greA [Thermotoga neapolitana DSM 4359] gi|254799574|sp|B9K7Y7|GREA_THENN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221572258|gb|ACM23070.1| Transcription elongation factor greA [Thermotoga neapolitana DSM 4359] Length = 156 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K++QEL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKQELEELKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S GD + G V++ ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSE-EGDEVTLGKWVTIRNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ++L+G+++GDI+ V APGG + Y++++V Sbjct: 120 ADSPLGKSLLGRKVGDIVKVKAPGGVQRYQVVEVT 154 >gi|145633475|ref|ZP_01789204.1| transcription elongation factor GreB [Haemophilus influenzae 3655] gi|144985844|gb|EDJ92452.1| transcription elongation factor GreB [Haemophilus influenzae 3655] Length = 168 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >gi|326203392|ref|ZP_08193257.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM 2782] gi|325986650|gb|EGD47481.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM 2782] Length = 158 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 88/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EG Sbjct: 3 AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S Sbjct: 63 RIVQLESMLKHARIIDEDEVNTDVVSLGSKVKIYDIEFDEEVEYLIVGSTEANPLKSKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIG + + V P G ++IL++ Sbjct: 123 NESPVGAALIGHSKDETVEVQVPDGVLKFKILEIS 157 >gi|307254163|ref|ZP_07536008.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258626|ref|ZP_07540361.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862863|gb|EFM94812.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867283|gb|EFM99136.1| Transcription elongation factor greB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 162 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ FGA V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156 >gi|116617590|ref|YP_817961.1| transcription elongation factor GreA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272209|sp|Q03YY4|GREA_LEUMM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116096437|gb|ABJ61588.1| transcription elongation factor GreA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 160 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKTYPMTAEGRDKLQLELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G Sbjct: 61 VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S SP+A ALIGK++G+ ++V P G EI+ V Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159 >gi|169824685|ref|YP_001692296.1| transcription elongation factor [Finegoldia magna ATCC 29328] gi|302380203|ref|ZP_07268675.1| transcription elongation factor GreA [Finegoldia magna ACS-171-V-Col3] gi|303234962|ref|ZP_07321586.1| transcription elongation factor GreA [Finegoldia magna BVS033A4] gi|254799559|sp|B0S216|GREA_FINM2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|167831490|dbj|BAG08406.1| transcription elongation factor [Finegoldia magna ATCC 29328] gi|302311986|gb|EFK93995.1| transcription elongation factor GreA [Finegoldia magna ACS-171-V-Col3] gi|302493817|gb|EFL53599.1| transcription elongation factor GreA [Finegoldia magna BVS033A4] Length = 159 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ LEN++ A+VI D + G+TV+ N + YQIVG E+D +G Sbjct: 61 EERINYLENLLLHAKVIQDDENQKDVVTVGSTVTYKNLNLNKEMTYQIVGTAESDPFAGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP +AL+ ++GD V PGG ++L V Sbjct: 121 ISNESPTGKALLNLKVGDTTKVETPGGIVELKVLTVK 157 >gi|59710728|ref|YP_203504.1| transcription elongation factor GreB [Vibrio fischeri ES114] gi|59478829|gb|AAW84616.1| transcription elongation factor [Vibrio fischeri ES114] Length = 157 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+D S +I FGA V + GD +++IVG E ++ +S Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIEN-EQGDTLSFRIVGPDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI KE+ + + V P G+K + + + + Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIRY 155 >gi|83643478|ref|YP_431913.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396] gi|83631521|gb|ABC27488.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396] Length = 167 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +TS+G +++EL++ + +RP + KA+SEA A GD SENAEY K+ + R+ Sbjct: 14 YITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGDRSENAEYIYGKKQLREIDRRVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +V+D R+ FGA V+L ++ GD+ Y+IVG E Q G +S+ SP Sbjct: 74 LTKRLDELKVVDRPPEDQSRVYFGAWVTLEDEE-GDEHRYRIVGSDEIGAQKGYISVDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +A+AL+ K++ D V P G K+Y ++++ + Sbjct: 133 MAKALLKKQVDDEAIVTTPSGRKSYFVIEIEYC 165 >gi|145635344|ref|ZP_01791046.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] gi|145637929|ref|ZP_01793571.1| transcription elongation factor GreB [Haemophilus influenzae PittHH] gi|145267350|gb|EDK07352.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] gi|145268869|gb|EDK08830.1| transcription elongation factor GreB [Haemophilus influenzae PittHH] Length = 162 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|238026489|ref|YP_002910720.1| transcription elongation factor GreB [Burkholderia glumae BGR1] gi|237875683|gb|ACR28016.1| Transcription elongation factor [Burkholderia glumae BGR1] Length = 186 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLQLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S S D++ FGATV G++ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQESTDQVFFGATVDYA-TEDGEEHTITIVGVDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ +GD +++ PGG + ++L V + Sbjct: 147 VSPIARALLKARIGDTVTLVTPGGPQPVDVLDVRY 181 >gi|147676597|ref|YP_001210812.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] gi|146272694|dbj|BAF58443.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] Length = 158 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G K++ EL + +R + + I +A +GD++EN+EY+ AK Q Sbjct: 1 MKEKEVILTVNGLKKLESELELLKSVKRREVAERIKQAIEFGDITENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++ID + + ++ G+TV L + GD+ Y IVG EAD + Sbjct: 61 EGRILTLEKMLRNAKIIDDENIGTEVVSIGSTVLLKDLECGDEYKYTIVGSAEADPGANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RA++G+ G ++ V P G+ Y+I+ +L Sbjct: 121 ISNESPVGRAILGQPKGSVVEVTVPAGQLKYQIIDIL 157 >gi|148548662|ref|YP_001268764.1| transcription elongation factor GreB [Pseudomonas putida F1] gi|148512720|gb|ABQ79580.1| transcription elongation factor GreB [Pseudomonas putida F1] Length = 162 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S R+ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGRVFFGAWVEIEN-DDGETMKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155 >gi|15640654|ref|NP_230283.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730110|ref|ZP_01682511.1| transcription elongation factor GreA [Vibrio cholerae V52] gi|147675665|ref|YP_001216128.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|153217134|ref|ZP_01950898.1| transcription elongation factor GreA [Vibrio cholerae 1587] gi|153801763|ref|ZP_01956349.1| transcription elongation factor GreA [Vibrio cholerae MZO-3] gi|153823554|ref|ZP_01976221.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|153827690|ref|ZP_01980357.1| transcription elongation factor GreA [Vibrio cholerae MZO-2] gi|153830955|ref|ZP_01983622.1| transcription elongation factor GreA [Vibrio cholerae 623-39] gi|227080815|ref|YP_002809366.1| transcription elongation factor GreA [Vibrio cholerae M66-2] gi|229505744|ref|ZP_04395254.1| transcription elongation factor GreA [Vibrio cholerae BX 330286] gi|229509223|ref|ZP_04398708.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|229512896|ref|ZP_04402363.1| transcription elongation factor GreA [Vibrio cholerae TMA 21] gi|229519568|ref|ZP_04409011.1| transcription elongation factor GreA [Vibrio cholerae RC9] gi|229520925|ref|ZP_04410347.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80] gi|229530439|ref|ZP_04419827.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)] gi|229608855|ref|YP_002879503.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236] gi|254292200|ref|ZP_04962968.1| transcription elongation factor GreA [Vibrio cholerae AM-19226] gi|297580760|ref|ZP_06942686.1| transcription elongation factor GreA [Vibrio cholerae RC385] gi|298500750|ref|ZP_07010553.1| transcription elongation factor GreA [Vibrio cholerae MAK 757] gi|9655069|gb|AAF93800.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628145|gb|EAX60677.1| transcription elongation factor GreA [Vibrio cholerae V52] gi|124113827|gb|EAY32647.1| transcription elongation factor GreA [Vibrio cholerae 1587] gi|124122728|gb|EAY41471.1| transcription elongation factor GreA [Vibrio cholerae MZO-3] gi|126518923|gb|EAZ76146.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|146317548|gb|ABQ22087.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|148873568|gb|EDL71703.1| transcription elongation factor GreA [Vibrio cholerae 623-39] gi|149737832|gb|EDM52737.1| transcription elongation factor GreA [Vibrio cholerae MZO-2] gi|150421881|gb|EDN13860.1| transcription elongation factor GreA [Vibrio cholerae AM-19226] gi|227008703|gb|ACP04915.1| transcription elongation factor GreA [Vibrio cholerae M66-2] gi|227012459|gb|ACP08669.1| transcription elongation factor GreA [Vibrio cholerae O395] gi|229332212|gb|EEN97700.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)] gi|229342158|gb|EEO07154.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80] gi|229344257|gb|EEO09232.1| transcription elongation factor GreA [Vibrio cholerae RC9] gi|229350145|gb|EEO15098.1| transcription elongation factor GreA [Vibrio cholerae TMA 21] gi|229353795|gb|EEO18731.1| transcription elongation factor GreA [Vibrio cholerae B33] gi|229357967|gb|EEO22884.1| transcription elongation factor GreA [Vibrio cholerae BX 330286] gi|229371510|gb|ACQ61933.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236] gi|297535176|gb|EFH74011.1| transcription elongation factor GreA [Vibrio cholerae RC385] gi|297540531|gb|EFH76589.1| transcription elongation factor GreA [Vibrio cholerae MAK 757] Length = 158 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 117/159 (73%), Gaps = 2/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S++SPIAR LIGK GD +S+ PGG K +EI +V ++ Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 158 >gi|120612233|ref|YP_971911.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1] gi|120590697|gb|ABM34137.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1] Length = 188 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYARLRSELLDLMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS Sbjct: 89 RFLTKRLDIAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSGQSQVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD + + PGG +T EIL+V + Sbjct: 148 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 182 >gi|56417186|ref|YP_154260.1| transcription elongation factor greA [Anaplasma marginale str. St. Maries] gi|222475551|ref|YP_002563968.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Florida] gi|254995354|ref|ZP_05277544.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Mississippi] gi|255003541|ref|ZP_05278505.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Puerto Rico] gi|56388418|gb|AAV87005.1| transcription elongation factor greA [Anaplasma marginale str. St. Maries] gi|222419689|gb|ACM49712.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Florida] Length = 174 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 16 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 74 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EADV + Sbjct: 75 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 134 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 +SI SP+ +L+G+ GD + V P G+ Y+I+++ ++ Sbjct: 135 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 174 >gi|114049374|ref|YP_739924.1| transcription elongation factor GreB [Shewanella sp. MR-7] gi|113890816|gb|ABI44867.1| transcription elongation factor GreB [Shewanella sp. MR-7] Length = 161 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +GF+K+ EL +E RP I K ++ A + GD SENA+Y+ K L + R+ L Sbjct: 8 ITREGFEKLNAELNHLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V++ S ++ FGA V + + GD K+++IVG E ++ +SI +P+ Sbjct: 68 RKRIEAVKVVEYSPQQDGKVFFGAWVQIEN-DDGDIKSFRIVGPDEIYGRNDYISIDAPM 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + V P GE+ + + + + Sbjct: 127 ARALLKKAVDDEVIVQTPVGEQMWYVNSISY 157 >gi|297588655|ref|ZP_06947298.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516] gi|297574028|gb|EFH92749.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516] Length = 159 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ LEN++ A+VI D + G+TV+ S + Y+IVG E+D +G Sbjct: 61 EERINYLENLLLYAKVIQDDENQKDVVTVGSTVTYKNLKSNKEMTYKIVGTAESDPFAGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP +AL+ ++GD +V PGG ++L V Sbjct: 121 ISNESPTGKALLNLKVGDTTTVETPGGIVELKVLTVK 157 >gi|254252970|ref|ZP_04946288.1| Transcription elongation factor [Burkholderia dolosa AUO158] gi|124895579|gb|EAY69459.1| Transcription elongation factor [Burkholderia dolosa AUO158] Length = 187 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV + GD+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENTDQVFFGATVDYATPD-GDEHTITIVGIDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI ++GD +++ P G + ++L V + Sbjct: 147 ISPIARALIKAKVGDTVTLMTPAGPQPIDVLDVRY 181 >gi|255004667|ref|ZP_05279468.1| transcription elongation factor greA (greA) [Anaplasma marginale str. Virginia] Length = 172 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 14 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 72 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EADV + Sbjct: 73 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 +SI SP+ +L+G+ GD + V P G+ Y+I+++ ++ Sbjct: 133 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 172 >gi|190575306|ref|YP_001973151.1| transcription elongation factor GreB [Stenotrophomonas maltophilia K279a] gi|190013228|emb|CAQ46862.1| putative transcription elongation factor [Stenotrophomonas maltophilia K279a] Length = 168 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITASGHARLKAELDDLWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA V L +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 TKRLESLRVVDTTPTDPLAVFFGAWVELENVDSGETSRYRIVGPDETDAGLGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K L D SV PGG+ T+ ++ V + Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVISVEY 165 >gi|225013112|ref|ZP_03703526.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-2A] gi|225002770|gb|EEG40752.1| transcription elongation factor GreA [Flavobacteria bacterium MS024-2A] Length = 158 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTEEGLKKLRAELNHLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +A++EN+++ A +I+ S + ++ +TV + K +G Y +V EAD+++G + Sbjct: 61 MHIAKMENVLSNARIINESELDTSKVLVLSTVEVKNKVNGGSMKYTLVAQSEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GK++G+I ++ P G E++ + Sbjct: 121 SVDSPIGKGLLGKKVGEIAVISVPNGSIELEVISIS 156 >gi|254521999|ref|ZP_05134054.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14] gi|219719590|gb|EED38115.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14] Length = 168 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITAAGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA V L +SGD Y+IVG E D G +SI SP+ Sbjct: 75 TKRLEALRVVDTTPTDPQAVFFGAWVDLENVDSGDTSRYRIVGPDETDAGLGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K L D SV PGG+ T+ ++ V + Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVIGVEY 165 >gi|126172390|ref|YP_001048539.1| transcription elongation factor GreB [Shewanella baltica OS155] gi|125995595|gb|ABN59670.1| transcription elongation factor GreB [Shewanella baltica OS155] Length = 169 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +G Sbjct: 3 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L +GD+ Y+IVG E D + G ++ Sbjct: 63 RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELEN-EAGDRVRYRIVGKDELDTKLGYIT 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I Q+ + Sbjct: 122 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 157 >gi|172058075|ref|YP_001814535.1| transcription elongation factor GreA [Exiguobacterium sibiricum 255-15] gi|171990596|gb|ACB61518.1| transcription elongation factor GreA [Exiguobacterium sibiricum 255-15] Length = 157 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G ++ EL + R +++ I AR++GDLSENAEY +AKE Q + Sbjct: 1 MAEKQYYMTLEGKANVENELNELKSVRRKEVVENIKIARSFGDLSENAEYDSAKEEQAMV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+A+LE ++ +I + G TV+ + +++ Y IVG EAD +G Sbjct: 61 EGRIAQLEEMLRNVAIISEDEKDISVVGIGTTVTFLILEDNEEETYTIVGSAEADPFTGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA++L G +G+ +SV APGG+ +I + Sbjct: 121 ISNESPIAKSLFGHSVGEQVSVQAPGGDFAVKITSIK 157 >gi|167032925|ref|YP_001668156.1| transcription elongation factor GreB [Pseudomonas putida GB-1] gi|166859413|gb|ABY97820.1| transcription elongation factor GreB [Pseudomonas putida GB-1] Length = 156 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNSISY 155 >gi|312892424|ref|ZP_07751919.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM 18603] gi|311295208|gb|EFQ72382.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM 18603] Length = 157 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 101/156 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D T +G +K+++EL++ + R I AI+EAR GDLSENAEY AAK+ Q +E Sbjct: 1 MADVAYYTKEGLEKLKEELQYLKTTGRQIISNAIAEARDKGDLSENAEYDAAKDAQGHHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A ++D S + ++ + V + +G +YQ+V + EAD++SG + Sbjct: 61 AKIAKLEEAMSNARLLDDSKLDLSKVLALSIVKIKNLKNGATMSYQLVSESEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +SPIA+ L+GK++G++I + P G+ +EIL++ Sbjct: 121 STASPIAKGLLGKKVGEVIEITVPAGKIDFEILEIS 156 >gi|88801364|ref|ZP_01116892.1| putative transcription elongation factor [Polaribacter irgensii 23-P] gi|88782022|gb|EAR13199.1| putative transcription elongation factor [Polaribacter irgensii 23-P] Length = 166 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + + +G K++ EL +Q ERPR+ I++AR GDLSENAEY AAKE Q+ E Sbjct: 9 MSEISYYSPEGLKKLRDELVQLEQVERPRVTVEIADARDKGDLSENAEYHAAKEEQSHLE 68 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+L+N+I+ A ++D S + ++ + V + +G + Y++V D E DV++G + Sbjct: 69 FKIAKLKNVISGARILDESQLDTSKVLIHSNVVIKNAINGAEFTYRLVADSETDVRNGKL 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK++G++ + P G +EI+ + Sbjct: 129 SVNSPIGKGLLGKKVGEVAEIQVPSGIMKFEIMAIS 164 >gi|127514564|ref|YP_001095761.1| transcription elongation factor GreB [Shewanella loihica PV-4] gi|126639859|gb|ABO25502.1| transcription elongation factor GreB [Shewanella loihica PV-4] Length = 160 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T +G+ + +EL++ +E RP I K + EA A GD SENA+Y K L + Sbjct: 1 MKAMLITREGWQALDRELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S ++ FGA V L + +G Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRVEDLQIVDYSPQQEGKVFFGAWVELED-ETGKIVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + VN P G+K + + ++ + Sbjct: 120 IDSPMARALIGKQVDDEVVVNTPAGKKEWYVNKIQY 155 >gi|227432544|ref|ZP_03914528.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351722|gb|EEJ41964.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 160 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKIYPMTAEGRDKLQFELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G Sbjct: 61 VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S SP+A ALIGK++G+ ++V P G EI+ V Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159 >gi|84386352|ref|ZP_00989380.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378776|gb|EAP95631.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 165 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++ +G++K++ E E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLISREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + + +GD K ++IVG +E G + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENQ-AGDVKKFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFEVKTPDGVKEWYINSITY 156 >gi|228472777|ref|ZP_04057535.1| transcription elongation factor GreA [Capnocytophaga gingivalis ATCC 33624] gi|228275828|gb|EEK14594.1| transcription elongation factor GreA [Capnocytophaga gingivalis ATCC 33624] Length = 156 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEM 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+LE ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S Sbjct: 61 KIAKLEELVASARVIDESQLDTSKVLILSTVKLKNKANNAVMTYTLVAESEADLKTGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SSPI R L+GK +GDI + P G EI+++ Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGILQMEIIEIT 155 >gi|120596941|ref|YP_961515.1| transcription elongation factor GreB [Shewanella sp. W3-18-1] gi|120557034|gb|ABM22961.1| transcription elongation factor GreB [Shewanella sp. W3-18-1] gi|319424532|gb|ADV52606.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200] Length = 167 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + Sbjct: 1 MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L ++G++ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I ++ + Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 155 >gi|197333913|ref|YP_002154890.1| transcription elongation factor GreB [Vibrio fischeri MJ11] gi|197315403|gb|ACH64850.1| transcription elongation factor GreB [Vibrio fischeri MJ11] Length = 155 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+D S +I FGA V + GD +++IVG E ++ +S Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIEN-EQGDTLSFRIVGPDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI KE+ + + V P G+K + + + + Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIKY 155 >gi|121593370|ref|YP_985266.1| transcription elongation factor GreB [Acidovorax sp. JS42] gi|120605450|gb|ABM41190.1| transcription elongation factor GreB [Acidovorax sp. JS42] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S Sbjct: 87 RFLTKRLEIADVVDPSVHAGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +++ P G +T EIL+V + Sbjct: 146 ISPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180 >gi|229524693|ref|ZP_04414098.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis VL426] gi|229338274|gb|EEO03291.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis VL426] Length = 161 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGIKEWFINSIEY 156 >gi|153002701|ref|YP_001368382.1| transcription elongation factor GreB [Shewanella baltica OS185] gi|160877437|ref|YP_001556753.1| transcription elongation factor GreB [Shewanella baltica OS195] gi|217975274|ref|YP_002360025.1| transcription elongation factor GreB [Shewanella baltica OS223] gi|304412250|ref|ZP_07393858.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307306034|ref|ZP_07585779.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|151367319|gb|ABS10319.1| transcription elongation factor GreB [Shewanella baltica OS185] gi|160862959|gb|ABX51493.1| transcription elongation factor GreB [Shewanella baltica OS195] gi|217500409|gb|ACK48602.1| transcription elongation factor GreB [Shewanella baltica OS223] gi|304349285|gb|EFM13695.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306910907|gb|EFN41334.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315269639|gb|ADT96492.1| transcription elongation factor GreB [Shewanella baltica OS678] Length = 167 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +G Sbjct: 1 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L +GD+ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELEN-EAGDRVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I Q+ + Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 155 >gi|264679927|ref|YP_003279836.1| Kelongation factor GreB [Comamonas testosteroni CNB-2] gi|262210442|gb|ACY34540.1| Kelongation factor GreB [Comamonas testosteroni CNB-2] Length = 231 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ Sbjct: 71 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 130 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS Sbjct: 131 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 189 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P++RAL+ +GD +++ P G + EIL V + Sbjct: 190 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 224 >gi|58582894|ref|YP_201910.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427488|gb|AAW76525.1| transcription elongation factor and transcript cleavage [Xanthomonas oryzae pv. oryzae KACC10331] Length = 188 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 35 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 94 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 95 SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 154 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + P G+ T+ ++ V + Sbjct: 155 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 185 >gi|78048442|ref|YP_364617.1| transcription elongation factor GreB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036872|emb|CAJ24565.1| transcription elongation factor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 168 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 84/152 (55%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+ K + D + P G+ T+ ++ V ++ Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 166 >gi|86135044|ref|ZP_01053626.1| transcription elongation factor GreA [Polaribacter sp. MED152] gi|85821907|gb|EAQ43054.1| transcription elongation factor GreA [Polaribacter sp. MED152] Length = 157 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 101/156 (64%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + +G K+++EL +Q ERPR+ + I++AR GDLSENAEY AAKE Q+ E Sbjct: 1 MSDISYYSPEGLKKLKEELHQLEQVERPRVTQEIADARDKGDLSENAEYHAAKEEQSHLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+L+N++ A ++D S + +I + V + +G + +Y++V D E DV++G + Sbjct: 61 TKIAKLKNVVANARILDESQLDTSKILIHSNVKIKNTANGMEFSYRLVADSETDVRNGKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GKE+G+I + P G +EI+++ Sbjct: 121 SVNSPIGKGLLGKEVGEIAEIQVPSGIMKFEIVEIT 156 >gi|146295865|ref|YP_001179636.1| transcription elongation factor GreA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409441|gb|ABP66445.1| transcription elongation factor GreA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 162 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 91/153 (59%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+ Sbjct: 9 KFQLSREAYEKYLKELENLKTVKRKEVAEKIKIARSFGDLSENSEYDEAKAEQAALEERI 68 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A LE +I A++ID +S D + G V + ++G+ Y IVG +EA+ +S Sbjct: 69 AYLEKLINNAKIIDKDEVSTDFVGIGTNVKIQNVDTGEIVEYSIVGSKEANPFEFKISDE 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIGK++G+++ V P G+ Y+IL++ Sbjct: 129 SPVGKALIGKKVGEVVEVTVPAGKFRYKILEIS 161 >gi|227329053|ref|ZP_03833077.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 158 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120 R+ L +T +++D S + FGA V + GD K +IVG E + + Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDNKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARA++ K + + +VN P G + + + + ++ Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157 >gi|170016629|ref|YP_001727548.1| transcription elongation factor [Leuconostoc citreum KM20] gi|238688945|sp|B1MX52|GREA_LEUCK RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169803486|gb|ACA82104.1| Transcription elongation factor [Leuconostoc citreum KM20] Length = 160 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q Sbjct: 1 MSEEKVFPMTAEGRDKLQAELEDLITRQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G Sbjct: 61 VEGRILTLKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S S +A AL+ K++GD +SV P GE EIL+V Sbjct: 121 KISNESAMAVALLDKKVGDKVSVPLPSGESIDVEILKVE 159 >gi|262190726|ref|ZP_06048956.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93] gi|262033403|gb|EEY51911.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93] Length = 161 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156 >gi|327485185|gb|AEA79592.1| Transcription elongation factor GreB [Vibrio cholerae LMA3894-4] Length = 169 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156 >gi|323494580|ref|ZP_08099684.1| transcription elongation factor [Vibrio brasiliensis LMG 20546] gi|323311183|gb|EGA64343.1| transcription elongation factor [Vibrio brasiliensis LMG 20546] Length = 159 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D++++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYDRLKRELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D S ++ FGA V + +G+ K+++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIEN-EAGEIKSFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D SV P G K + + Q+ + Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGYKEWFVNQIRY 156 >gi|320539828|ref|ZP_08039487.1| transcription elongation factor [Serratia symbiotica str. Tucson] gi|320030014|gb|EFW12034.1| transcription elongation factor [Serratia symbiotica str. Tucson] Length = 157 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTQLITRQGYSKLKQELDYLWREERPEVTKKVACAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +VI+ + ++ FGA V + ++GD K ++IVG E + +S Sbjct: 61 RVRYLAQCLEQLKVINYAPQQEGKVFFGAWVEVEN-DNGDVKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARAL+ KE+GD VN P GE + I ++ + Sbjct: 120 IDAPMARALLKKEVGDTAIVNTPQGEAWWHINKIEY 155 >gi|296137091|ref|YP_003644333.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] gi|295797213|gb|ADG32003.1| GreA/GreB family elongation factor [Thiomonas intermedia K12] Length = 187 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 30 KNYLTPLGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 89 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D++ FGATV + + G + IVG E + G +S Sbjct: 90 RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISW 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +S+ PGG T EIL+V + Sbjct: 149 ISPVARALLKAREGDSVSLPTPGGIATLEILEVSY 183 >gi|209693811|ref|YP_002261739.1| transcription elongation factor GreB [Aliivibrio salmonicida LFI1238] gi|208007762|emb|CAQ77881.1| transcription elongation factor GreB [Aliivibrio salmonicida LFI1238] Length = 155 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+K+Q EL + +E+RP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+D S ++ FGA ++E GD +++IVG E + +S Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKVFFGA-FVVIENEQGDTLSFRIVGPDEIFGRHDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI KE+ + V P G+K + + + + Sbjct: 120 IDSPMARALIKKEVDEEAIVKTPEGDKEWFVNSIKY 155 >gi|311747366|ref|ZP_07721151.1| transcription elongation factor GreA [Algoriphagus sp. PR1] gi|126579084|gb|EAZ83248.1| transcription elongation factor GreA [Algoriphagus sp. PR1] Length = 157 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 96/157 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G +++ EL+ + + R I K I+EAR GDLSENAEY AAK+ Q E Sbjct: 1 MGKVQYYTEEGLKRLKDELQELKTKGRSDIAKQIAEARDKGDLSENAEYDAAKDAQGHLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A V D S M ++ +TV + +G +Y +V ++EAD+++G + Sbjct: 61 LKIAKLEAVVGNARVFDNSQMDTSKVGILSTVKIKNVKNGMTVSYTLVSEEEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP + L+GK++G++ +NAP G +EIL++ + Sbjct: 121 SLGSPFGKGLVGKKVGEVAEINAPAGALQFEILEISY 157 >gi|113866980|ref|YP_725469.1| transcription elongation factor GreB [Ralstonia eutropha H16] gi|113525756|emb|CAJ92101.1| transcription elongation factor [Ralstonia eutropha H16] Length = 187 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T++G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITAEGYNRLRNELMQLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + +AEV+D S D+I FGATV+ + +G++ IVG E D+ S VS Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANR-AGEETTITIVGMDEVDLDSNHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALI GD +++ P G + +IL+V + Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILEVRY 182 >gi|113461635|ref|YP_719704.1| transcription elongation factor GreB [Haemophilus somnus 129PT] gi|112823678|gb|ABI25767.1| transcription elongation factor GreB [Haemophilus somnus 129PT] Length = 158 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + Sbjct: 1 MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D + Sbjct: 61 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALED-EQGEEKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V P G + I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINKIWY 156 >gi|145638522|ref|ZP_01794131.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|145272117|gb|EDK12025.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|309750026|gb|ADO80010.1| Transcription elongation factor GreB [Haemophilus influenzae R2866] Length = 162 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPPKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V+ P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVDTPSGFITLYVNKIWY 156 >gi|254428022|ref|ZP_05041729.1| transcription elongation factor GreB [Alcanivorax sp. DG881] gi|196194191|gb|EDX89150.1| transcription elongation factor GreB [Alcanivorax sp. DG881] Length = 165 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ K+ EL++ +E+RP + +A+ EA A GD SENAEY K+ + R+ Sbjct: 14 YITVEGYHKLNDELQYLWKEKRPVVTQAVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+D RI FGA V L E G + Y++VG E D G +SI +P Sbjct: 74 LSKRLDDMTVVDRVPEDQSRIFFGAWVEL-ETEDGGTETYRLVGPDETDAGRGYISIDAP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K++ D ++V P GE+ I ++ + Sbjct: 133 LARALLKKQVDDEVAVRTPAGERCLFINRIWY 164 >gi|251787893|ref|YP_003002614.1| transcription elongation factor GreB [Dickeya zeae Ech1591] gi|247536514|gb|ACT05135.1| transcription elongation factor GreB [Dickeya zeae Ech1591] Length = 160 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V + ++ GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENED-GDIKCFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + + V+ P G K + + ++ + Sbjct: 125 ARALLKKAVDEEAVVSTPAGPKVWYVNKIDY 155 >gi|153825544|ref|ZP_01978211.1| transcription elongation factor GreB [Vibrio cholerae MZO-2] gi|254285910|ref|ZP_04960872.1| transcription elongation factor GreB [Vibrio cholerae AM-19226] gi|149740829|gb|EDM54920.1| transcription elongation factor GreB [Vibrio cholerae MZO-2] gi|150424092|gb|EDN16031.1| transcription elongation factor GreB [Vibrio cholerae AM-19226] Length = 160 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156 >gi|332975157|gb|EGK12059.1| transcription elongation factor GreA [Desmospora sp. 8437] Length = 158 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K + +T +G K++ EL + + R + + EA A GDLSENAEY AAKE Q Sbjct: 1 MAQKKEVLLTEEGLAKVKDELELYRTKRRQDVANRLKEAIAQGDLSENAEYDAAKEEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ LEN++ A++ID T + + ++ GA V++ E GD++ Y IVG E+D SG Sbjct: 61 VESRIMTLENMVRNAKIIDQDTQNKNFVSVGAKVTIQELPDGDEETYTIVGSAESDPISG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI LIGK G+ I V AP G ++I+ + Sbjct: 121 KISNESPIGAELIGKREGETIKVPAPSGTLEFKIISI 157 >gi|120556642|ref|YP_960993.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8] gi|120326491|gb|ABM20806.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8] Length = 171 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 9/165 (5%) Query: 1 MVDKIP--------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAA 52 M ++ P +T +G ++ EL++ + +RP + +A+ EA A GD SENAEY Sbjct: 1 MANQTPSGNNRPRYITPEGEQALRDELQFLWKVKRPEVTQAVREAAALGDRSENAEYIYG 60 Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 K+ + R+ L + V+D R+ F A V++ +++ G ++ Y+IVG E Sbjct: 61 KKQLREIDRRVRFLSKRLDEVSVVDRLPEDRSRVFFAAWVTIEDED-GSEQEYRIVGADE 119 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 D++ G +SI+SP+ARALIGK L D +SV P G K I + + Sbjct: 120 FDLEKGYLSINSPLARALIGKHLDDEVSVRTPEGWKQVVITDIRY 164 >gi|255011567|ref|ZP_05283693.1| putative transcription elongation factor [Bacteroides fragilis 3_1_12] gi|313149395|ref|ZP_07811588.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12] gi|313138162|gb|EFR55522.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12] Length = 154 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 97/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+P Sbjct: 63 LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154 >gi|212637544|ref|YP_002314069.1| transcription elongation factor and transcript cleavage [Shewanella piezotolerans WP3] gi|212559028|gb|ACJ31482.1| Transcription elongation factor and transcript cleavage [Shewanella piezotolerans WP3] Length = 160 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +GFDK+Q+EL + +E RP I K +S A + GD SENA+Y K+ + Sbjct: 1 MRTNIVTREGFDKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I +V+D S ++ FGA V + + G+K++++IVG E ++ +S Sbjct: 61 RVRYLRKTIENVQVVDYSPAQEGKVFFGAWVEIEN-DDGEKRSFKIVGYDEIFGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+AR L+ KE+ D ++ P GE+ + I ++ + Sbjct: 120 IDSPMARGLLKKEVDDEAVIHTPAGEQVWYINRISY 155 >gi|288957371|ref|YP_003447712.1| transcription elongation factor [Azospirillum sp. B510] gi|288909679|dbj|BAI71168.1| transcription elongation factor [Azospirillum sp. B510] Length = 183 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T GF ++Q+ELR + ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 28 KNYMTPPGFQRMQEELRHLLRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V++ +++ FGATV+ + G + IVG E D G VS Sbjct: 88 RFLNKRLESAVVVNPQDQKNREQVFFGATVTYA-REDGSENTVTIVGADEVDPDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ GD++ V P G + E+L++ + Sbjct: 147 ISPIARALLKAREGDMVDVRTPAGMEQVEVLEIRY 181 >gi|227112177|ref|ZP_03825833.1| transcription elongation factor GreB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 159 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120 R+ L +T +++D S + FGA V + G+ K +IVG E + + Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGEVKRLRIVGPDEIYGDNKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARA++ K + + +VN P G + + + + ++ Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157 >gi|326803433|ref|YP_004321251.1| transcription elongation factor GreA [Aerococcus urinae ACS-120-V-Col10a] gi|326651692|gb|AEA01875.1| transcription elongation factor GreA [Aerococcus urinae ACS-120-V-Col10a] Length = 159 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M ++ P+T +G ++++ EL + +RP +I I AR++GDLSEN+EY++AK Q++ Sbjct: 1 MSEQTFPMTVEGKERLEAELEDLKLNKRPEVISRIKVARSFGDLSENSEYESAKNEQSIL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E ++A++EN+I AE++D + D ++ G V E G+++ Y+IVG EAD G Sbjct: 61 ESQIAKIENMIRYAEIVDPDALGKDTVSIGKRVKFQELPDGEEEEYEIVGKAEADPLGGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA ALIGK++GD + + PG + IL V Sbjct: 121 ISNESPIANALIGKKVGDEVEIETPGEAFSVRILAVE 157 >gi|210623236|ref|ZP_03293675.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275] gi|210153773|gb|EEA84779.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275] Length = 159 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 91/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +I +T +GFDK++ EL + R + + + A +YGDLSENAEY AK+ Q E + Sbjct: 5 KEILLTQEGFDKLEAELEELKIVGRKDVAEKLKVAISYGDLSENAEYDEAKKEQAELEEK 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++EN+I +A +ID ++ ++ G+ V L + + ++ Y IVG EAD +G +S Sbjct: 65 ILKIENMIRKATIIDEESIDLSKVTAGSIVKLYDYDFEEEVTYTIVGSTEADPFAGKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI +A++GK GD + V P G Y+IL + Sbjct: 125 ESPIGKAILGKSEGDEVEVQVPDGVVKYKILSIS 158 >gi|327439572|dbj|BAK15937.1| transcription elongation factor [Solibacillus silvestris StLB046] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T G K++ EL + +RP +++ I AR++GDLSEN+EY +AKE Q EGR Sbjct: 5 KQYPMTLDGKQKLEDELNTLKTVKRPEVVERIKVARSFGDLSENSEYDSAKEEQGFVEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD----KKNYQIVGDQEADVQSG 118 ++ +E ++ A +I S + I+ G TV+ E +G +++Y IVG EAD G Sbjct: 65 ISLIEQMLRNAVIITEDETS-NTISLGKTVTFDELINGKRANFEESYTIVGSAEADPMEG 123 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK + D++ + PGGE IL+V Sbjct: 124 KISNDSPIAKALMGKHVDDVVKLTTPGGEMEVIILEVK 161 >gi|300814578|ref|ZP_07094829.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511197|gb|EFK38446.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 157 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 89/157 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 1 MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG + Sbjct: 61 ERIAKLEMMARNAKVIDEKDLNHDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+ LIG ++GDI + P G Y++ + + Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157 >gi|119776641|ref|YP_929381.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119769141|gb|ABM01712.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 165 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T KG++ + +EL++ +E RP I + EA A GD SENA+Y K L Sbjct: 1 MTEKAHLITRKGWEALDKELKYLWKEYRPEITLKVQEAAAQGDRSENADYTYNKRLLRQI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L + +++D S ++ FGA V L + G Y+IVG E D + G Sbjct: 61 DSRVRYLIKRLEVLKIVDYSPQQEGKVFFGAWVELEN-DEGAVVRYRIVGKDEIDTKKGY 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++I SP+ARALIGK++ D + V P G K + I ++ + Sbjct: 120 ITIDSPMARALIGKQVDDEVVVQTPSGRKEWFINEIRY 157 >gi|149184452|ref|ZP_01862770.1| transcription elongation factor [Erythrobacter sp. SD-21] gi|148831772|gb|EDL50205.1| transcription elongation factor [Erythrobacter sp. SD-21] Length = 155 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK+P+ ++G++K+ +L+ + ERPRI+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 1 MDKVPMLAEGYEKLTADLKVLRA-ERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE+ I+RA++ID +T+SGD++ FGATV+L++++ K YQIVG EAD G +S Sbjct: 60 MIGDLEDKISRAQIIDPTTLSGDKVIFGATVTLLDEDDKPVK-YQIVGQTEADASKGRIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SPIARALIGK++ + + V P G+K Y I ++ +I Sbjct: 119 YTSPIARALIGKQVEEEVEVTVPSGDKFYLIDKIEFI 155 >gi|227510504|ref|ZP_03940553.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513513|ref|ZP_03943562.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227524655|ref|ZP_03954704.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227083386|gb|EEI18698.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227088139|gb|EEI23451.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227190156|gb|EEI70223.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T++G DK+Q+EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ Sbjct: 1 MAEQESYPMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +E++I A++ID D + G V+ E + + Y IVG EAD SG Sbjct: 61 LESRITTIEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+G L + + ++ P G+ +IL+V Sbjct: 121 KISNDSPIAKGLLGHRLNEEVVIHIPAGDMKVKILEVK 158 >gi|77460238|ref|YP_349745.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf0-1] gi|77384241|gb|ABA75754.1| transcription elongation factor [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARMRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++V+ +++ FGA V++ +++ G + Y+IVG E D++ GL+SI SP+ Sbjct: 75 TKRLEASKVVSEKPSDPNKVYFGAWVTIEDED-GKQSRYRIVGPDELDLKLGLISIDSPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGK L + V P GE+ I+ + + Sbjct: 134 ARALIGKALDAEVRVQTPTGEQFVYIVAIEY 164 >gi|304403741|ref|ZP_07385403.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] gi|304346719|gb|EFM12551.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus YK9] Length = 159 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 87/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ +T +G+DK+ EL + R + + + A +YGDL EN+EY +AK Q+ E Sbjct: 4 AEEVILTQEGYDKLMAELEELKTTTRKELAERLKVAISYGDLKENSEYHSAKNDQSFVET 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ LEN+ A ++ + + G TV L + + Y IVG EAD+ + +S Sbjct: 64 RIKTLENMFKHARIVQAEKLDTAVVQVGFTVKLHDVEFDEDVTYTIVGPAEADIMNNKLS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ + LIGK +G+ I+V AP G +Y+IL++ Sbjct: 124 YESPLGKELIGKSVGNAITVTAPSGLISYKILEIT 158 >gi|282882521|ref|ZP_06291142.1| transcription elongation factor GreA [Peptoniphilus lacrimalis 315-B] gi|281297663|gb|EFA90138.1| transcription elongation factor GreA [Peptoniphilus lacrimalis 315-B] Length = 157 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 89/157 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 1 MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG + Sbjct: 61 ERIAKLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+ LIG ++GDI + P G Y++ + + Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157 >gi|90416385|ref|ZP_01224317.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2207] gi|90332110|gb|EAS47324.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2207] Length = 165 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 82/152 (53%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K++ E+ + ERP++ + EA GD SEN +Y K + R+ Sbjct: 14 YITPEGASKMRAEVHQLWKVERPKVTHIVHEAAKNGDRSENGDYIYGKRRLREIDSRVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L I A +++ ++ F A V++ +++SG++ Y++VG E D +SI SP Sbjct: 74 LTKRIEDATIVEDKPRDPSKVFFAAWVTVEDEDSGEEHIYRLVGSDEIDSALNWISIDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+GK + D ++V P G++ I ++ + Sbjct: 134 MARALVGKSIDDEVNVKTPAGDRCLIITEISY 165 >gi|332284095|ref|YP_004416006.1| transcription elongation factor GreB [Pusillimonas sp. T7-7] gi|330428048|gb|AEC19382.1| transcription elongation factor GreB [Pusillimonas sp. T7-7] Length = 193 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T+ G+ +++ EL EERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 37 KNYITTAGYQRLRAELAHLMNEERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 96 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV++ +T D++ FGATV + +G+ IVG EA+ G +S Sbjct: 97 RFLTKRLEVAEVVNPATQPNKDQVFFGATVEYSD-KAGETFRVTIVGVDEAEPLQGRISW 155 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD +++ P G +IL+V + Sbjct: 156 ISPVARALLKAREGDTVTLRTPAGVDELDILEVSY 190 >gi|148827761|ref|YP_001292514.1| transcription elongation factor GreB [Haemophilus influenzae PittGG] gi|148719003|gb|ABR00131.1| transcription elongation factor GreB [Haemophilus influenzae PittGG] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T + ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156 >gi|15644454|ref|NP_229506.1| transcription elongation factor GreA [Thermotoga maritima MSB8] gi|7387720|sp|Q9X232|GREA_THEMA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|4982283|gb|AAD36773.1|AE001810_12 transcription elongation factor, greA/greB family [Thermotoga maritima MSB8] Length = 156 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ++L+G+++GD++ V AP G + Y+++ V Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153 >gi|258513604|ref|YP_003189826.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans DSM 771] gi|257777309|gb|ACV61203.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans DSM 771] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G +++EL + R I I +A +GD+SEN+EY+ AK Q Sbjct: 1 MKEKEVILTVAGLKNLEEELEQLKSVRRREIAARIKQAIEFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++ID + + + G+ V L + GD+ Y IVG EAD + Sbjct: 61 EGRILTLEKMLRNAKIIDDENIDIEAVHIGSKVLLKDLEFGDEFEYTIVGSVEADPGASK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK G ++ VN P G YEI+ ++ Sbjct: 121 ISNESPVGKAILGKPKGSVVEVNVPAGILKYEIMDII 157 >gi|225026969|ref|ZP_03716161.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353] gi|224955705|gb|EEG36914.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353] Length = 160 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +TS+G ++ EL+ + +R I + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKHILTSQGMQALEDELQDLKVVKRKEIAQKIKEAREQGDLSENAEYDAAKDEQRSMEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II AEVID S D ++ G+TV ++ ++ Y+IVG E+D+ GL+S Sbjct: 64 RIEELEKIIKNAEVIDESAYDKDTVSIGSTVKFYDEEFDEELEYRIVGSTESDILKGLIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ + LIG ++G+ + V +P G Y+IL + Sbjct: 124 NESPLGKGLIGAKIGETVQVESPDGFSRYKILGIS 158 >gi|91216953|ref|ZP_01253916.1| transcription elongation factor greA [Psychroflexus torquis ATCC 700755] gi|91184824|gb|EAS71204.1| transcription elongation factor greA [Psychroflexus torquis ATCC 700755] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 91/156 (58%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ E + ERP+ + I++AR GDLSENAEY AAKE Q + E Sbjct: 1 MSKVSYYTEEGLKKLRAEFEQLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE ++ A VID S + ++ + V L + Y++V EAD+++G + Sbjct: 61 MRLAKLEQVVANARVIDESQLDTSKVLIHSKVRLKNVKMNQEMTYKLVAQSEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GKE GD + P G+ T+EIL+V Sbjct: 121 SVDSPIGKGLLGKEAGDTAEIEVPSGKITFEILEVS 156 >gi|328474225|gb|EGF45030.1| transcription elongation factor GreA [Vibrio parahaemolyticus 10329] Length = 152 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 104/145 (71%), Gaps = 2/145 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPG 145 S+SSPIAR LIGK GD +++ P Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPA 144 >gi|153802191|ref|ZP_01956777.1| transcription elongation factor GreB [Vibrio cholerae MZO-3] gi|124122265|gb|EAY41008.1| transcription elongation factor GreB [Vibrio cholerae MZO-3] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156 >gi|71279513|ref|YP_271605.1| transcription elongation factor GreB [Colwellia psychrerythraea 34H] gi|71145253|gb|AAZ25726.1| transcription elongation factor GreB [Colwellia psychrerythraea 34H] Length = 160 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+D++ +EL++ ++ERP+I +++SEA A GD SENAEY K + Sbjct: 1 MKRSSYITRAGWDRLDKELKFLWKDERPKITRSVSEAAAQGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L ++ R+ FGA V+L+ ++ + Y++VG E DV+ G + Sbjct: 61 RRVRFLMKRTEDLTIVYPDPQQEGRVFFGAWVTLINEDD-IEVVYRLVGPDEWDVKRGEI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK + D I VNAP GE+ ++I+ + + Sbjct: 120 SIDSPMARALLGKAVDDEIVVNAPEGERVFDIVNISY 156 >gi|319775510|ref|YP_004137998.1| transcription elongation factor [Haemophilus influenzae F3047] gi|329122448|ref|ZP_08251035.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC 11116] gi|317450101|emb|CBY86315.1| transcription elongation factor [Haemophilus influenzae F3047] gi|327473730|gb|EGF19149.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC 11116] Length = 162 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EER ++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERSKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|288576392|ref|ZP_06394360.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996] gi|288565631|gb|EFC87191.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996] Length = 256 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 99 KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 158 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 159 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 217 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 218 ISPLARCLIKAREGDEVILNTPEGREEIEILSVEYI 253 >gi|153815947|ref|ZP_01968615.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756] gi|317500711|ref|ZP_07958929.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|331089814|ref|ZP_08338707.1| transcription elongation factor greA [Lachnospiraceae bacterium 3_1_46FAA] gi|145846766|gb|EDK23684.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756] gi|316897905|gb|EFV19958.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|330403511|gb|EGG83069.1| transcription elongation factor greA [Lachnospiraceae bacterium 3_1_46FAA] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 88/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKRLLTYAGLKALEDELETLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S Sbjct: 64 RIEELEGILKNAEVVVEDEVDFDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLVGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIGK++GD +SV GE Y++L++ Sbjct: 124 NESPVGQALIGKKVGDTVSVETQAGEIKYKVLEIS 158 >gi|313201051|ref|YP_004039709.1| transcription elongation factor greb [Methylovorus sp. MP688] gi|312440367|gb|ADQ84473.1| transcription elongation factor GreB [Methylovorus sp. MP688] Length = 164 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D K +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K Sbjct: 1 MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 60 Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ L + A ++D S +++ FGA VSL + +Y+IVG E D G Sbjct: 61 DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ARA++GK++GD++ P GE++YEI+ + + Sbjct: 121 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 159 >gi|313499599|gb|ADR60965.1| GreB [Pseudomonas putida BIRD-1] Length = 162 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155 >gi|307132913|ref|YP_003884929.1| transcription elongation factor GreB [Dickeya dadantii 3937] gi|306530442|gb|ADN00373.1| Transcription elongation factor GreB [Dickeya dadantii 3937] Length = 166 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V + ++ GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENED-GDVKRFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + + VN P G K + + ++ + Sbjct: 125 ARALLKKAVDEEAVVNTPTGPKVWYVNKIDY 155 >gi|194289080|ref|YP_002004987.1| transcription elongation factor greb [Cupriavidus taiwanensis LMG 19424] gi|193222915|emb|CAQ68920.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR) [Cupriavidus taiwanensis LMG 19424] Length = 187 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T++G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITAEGYARLRNELMQLIDVERPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + +AEV+D S D+I FGATV+ SG++ IVG E D+ VS Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYA-HASGEETTITIVGMDEVDLDHNHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+AL+ GD +++ P G + +IL+V + Sbjct: 148 ISPIAKALLKAREGDTVALRTPAGVEQIDILEVRY 182 >gi|261823310|ref|YP_003261416.1| transcription elongation factor GreB [Pectobacterium wasabiae WPP163] gi|261607323|gb|ACX89809.1| transcription elongation factor GreB [Pectobacterium wasabiae WPP163] Length = 159 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTNLITREGYDKLRAEHEHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L +T +++D S + FGA V + GD K +IVG E + Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDSKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARA++ K + + +VN P G + + + + ++ Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNAIDYV 157 >gi|50123038|ref|YP_052205.1| transcription elongation factor GreB [Pectobacterium atrosepticum SCRI1043] gi|49613564|emb|CAG77015.1| transcription elongation factor [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK++ E +RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTNLITREGYDKLRAEHEHLWNIKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D S + FGA + + GD K +IVG E + Sbjct: 61 RVRYLRKCLAELKIVDYSPQQDGSVFFGAWIEIEN-EQGDVKRLRIVGPDEIYGDSKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARA++ K + + +VN P G + + I + ++ Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFINAIDYV 157 >gi|260774750|ref|ZP_05883653.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC BAA-450] gi|260609312|gb|EEX35464.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC BAA-450] Length = 158 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLV 120 R+ L + + +V+D + ++ FGA V + +G+ K ++IVG E + Sbjct: 61 RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEVEN-EAGEVKKFRIVGPDEIYGGAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D SV P GEK + + + + Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGEKEWFVNSICY 156 >gi|153828361|ref|ZP_01981028.1| transcription elongation factor GreB [Vibrio cholerae 623-39] gi|229513643|ref|ZP_04403107.1| transcription elongation factor GreB [Vibrio cholerae TMA 21] gi|229521789|ref|ZP_04411207.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80] gi|229527359|ref|ZP_04416751.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)] gi|261211278|ref|ZP_05925567.1| transcription elongation factor GreB [Vibrio sp. RC341] gi|262166724|ref|ZP_06034461.1| transcription elongation factor GreB [Vibrio mimicus VM223] gi|148876191|gb|EDL74326.1| transcription elongation factor GreB [Vibrio cholerae 623-39] gi|229334991|gb|EEO00476.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)] gi|229341383|gb|EEO06387.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80] gi|229349520|gb|EEO14476.1| transcription elongation factor GreB [Vibrio cholerae TMA 21] gi|260839779|gb|EEX66390.1| transcription elongation factor GreB [Vibrio sp. RC341] gi|262026440|gb|EEY45108.1| transcription elongation factor GreB [Vibrio mimicus VM223] Length = 160 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156 >gi|319897915|ref|YP_004136112.1| transcription elongation factor [Haemophilus influenzae F3031] gi|317433421|emb|CBY81802.1| transcription elongation factor [Haemophilus influenzae F3031] Length = 158 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETNQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|302189947|ref|ZP_07266620.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae 642] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARAL+ KE+GD + VN P GEK + + + ++ Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDYV 156 >gi|104781028|ref|YP_607526.1| transcription elongation factor GreB [Pseudomonas entomophila L48] gi|95110015|emb|CAK14720.1| transcription elongation factor and transcript cleavage [Pseudomonas entomophila L48] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVTWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + GD+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVSYSPQQEGKVFFGAWVEIEN-DEGDQLKFRIVGYDEIHGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNTISY 155 >gi|331007819|ref|ZP_08330923.1| Transcription elongation factor GreB [gamma proteobacterium IMCC1989] gi|330418373|gb|EGG92935.1| Transcription elongation factor GreB [gamma proteobacterium IMCC1989] Length = 168 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T++G + EL+ + ERP + + EA GD SEN +Y K+ + R+ Sbjct: 14 YITAEGAAHLTAELKQLWKVERPVVTDTVHEAAKNGDRSENGDYIYGKKRLREIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + ++D + + + + FGA V+L++ + + + YQIVG E D+ +S+ SP Sbjct: 74 LTKRLEELTIVDQAPANQNTVYFGAWVTLID-DDDNTQRYQIVGPDEFDISQQKISMDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IA+AL+ K+LGD + + P G+ + I ++ +I Sbjct: 133 IAKALLKKQLGDEVLIVTPNGDTLFYIEKIEYI 165 >gi|189459948|ref|ZP_03008733.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136] gi|189433321|gb|EDV02306.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136] Length = 202 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 96/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q + E ++ + Sbjct: 51 YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINQ 110 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 111 LKATIGDAKIIDTSKLKADTVQILTRVELKNVKTGMKMAYTIVSETEANLKLGKISVNTP 170 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GDI + P G+ + E+ + + Sbjct: 171 IAQGLLGKKVGDIAEITIPQGKISLEVTGISF 202 >gi|148270136|ref|YP_001244596.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1] gi|281412522|ref|YP_003346601.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10] gi|166201192|sp|A5ILE7|GREA_THEP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|147735680|gb|ABQ47020.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1] gi|281373625|gb|ADA67187.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10] Length = 156 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ++L+G+++GD++ V AP G + Y+++ V Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVMAV 153 >gi|331701536|ref|YP_004398495.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] gi|329128879|gb|AEB73432.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 95/154 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D P+T+ G DK++ EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R Sbjct: 4 DTYPMTADGRDKLKAELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A++ID + D + G V+ E D + YQIVG EAD SG +S Sbjct: 64 ITTIEHMLQYAQIIDSNDSDKDEVTVGKKVTFQELPDEDPETYQIVGAAEADPMSGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+ LIG L + +++ P G +I +V Sbjct: 124 DSPIAKGLIGHRLNEEVNIPIPAGTMKVKITKVE 157 >gi|260771182|ref|ZP_05880109.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972] gi|260613779|gb|EEX38971.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972] gi|315179211|gb|ADT86125.1| transcription elongation factor GreA [Vibrio furnissii NCTC 11218] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLRDELDRLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M +I FG+TV+L++ ++ ++K YQIVGD EAD+++G + Sbjct: 60 QIRDIEFKLSVAQVIDVTKMDNSGKIIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGGEK +EI V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGEKVFEIDHVDYV 157 >gi|217969791|ref|YP_002355025.1| transcription elongation factor GreB [Thauera sp. MZ1T] gi|217507118|gb|ACK54129.1| transcription elongation factor GreB [Thauera sp. MZ1T] Length = 184 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ Sbjct: 29 KNYMTRRGYDALRVELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AEV+D G +++ FGATVS + ++ +++ QIVG EAD G +S Sbjct: 89 RFLIKRIESAEVVDPERQQGLEQVFFGATVSFSDLDTAEEQTLQIVGVDEADASQGRISW 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARA++ +GD++ ++P G + EI V + Sbjct: 149 ISPLARAVLKARVGDVVRFHSPAGVREIEIGAVEY 183 >gi|297581551|ref|ZP_06943474.1| transcription elongation factor GreB [Vibrio cholerae RC385] gi|297534389|gb|EFH73227.1| transcription elongation factor GreB [Vibrio cholerae RC385] Length = 160 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156 >gi|170720942|ref|YP_001748630.1| transcription elongation factor GreB [Pseudomonas putida W619] gi|169758945|gb|ACA72261.1| transcription elongation factor GreB [Pseudomonas putida W619] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIEN-DDGETLKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEKGDEVVVHTPTGEATWYVSSISY 155 >gi|166712646|ref|ZP_02243853.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 200 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 45 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 105 SKRLEALRVVDTAPTEPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + P G+ T+ ++ V + Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVHY 195 >gi|295677338|ref|YP_003605862.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295437181|gb|ADG16351.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 189 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 29 KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV G++ IVG E D+ G VS Sbjct: 89 RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYA-TEDGEEHKVTIVGVDEVDLDIGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182 >gi|83748900|ref|ZP_00945911.1| GreB [Ralstonia solanacearum UW551] gi|207743760|ref|YP_002260152.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum IPO1609] gi|300703579|ref|YP_003745181.1| transcription elongation factor (transcript cleavage factor) [Ralstonia solanacearum CFBP2957] gi|83724466|gb|EAP71633.1| GreB [Ralstonia solanacearum UW551] gi|206595159|emb|CAQ62086.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum IPO1609] gi|299071242|emb|CBJ42560.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum CFBP2957] Length = 187 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD +++ P G +IL V + Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182 >gi|146294891|ref|YP_001185315.1| transcription elongation factor GreB [Shewanella putrefaciens CN-32] gi|145566581|gb|ABP77516.1| transcription elongation factor GreB [Shewanella putrefaciens CN-32] Length = 160 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFDK+ EL + +E RP I K ++ A + GD SENA+Y+ K L + Sbjct: 1 MKTNLITREGFDKLNAELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I ++++ S ++ FGA V + ++G+ K+++IVG E ++ +S Sbjct: 61 RVRYLRKRIEAVKIVEYSPQQDGKVFFGAWVQIEN-DAGEIKSFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARAL+ KE+ D + V+ P GE T+ + + + Sbjct: 120 IDAPMARALLKKEVDDEVVVSTPLGEHTWYVNSISY 155 >gi|300690932|ref|YP_003751927.1| transcription elongation factor (transcript cleavage factor) [Ralstonia solanacearum PSI07] gi|299077992|emb|CBJ50633.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum PSI07] Length = 187 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I +AEV+D S D+I FGATV+ ++ GD+ IVG E D++ G VS Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLEKGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD +++ P G + +IL V + Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEQIDILAVTY 182 >gi|253998948|ref|YP_003051011.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4] gi|253985627|gb|ACT50484.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4] Length = 169 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D K +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K Sbjct: 6 MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 65 Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ L + A ++D S +++ FGA VSL + +Y+IVG E D G Sbjct: 66 DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 125 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ARA++GK++GD++ P GE++YEI+ + + Sbjct: 126 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 164 >gi|85710775|ref|ZP_01041836.1| GreB [Idiomarina baltica OS145] gi|85695179|gb|EAQ33116.1| GreB [Idiomarina baltica OS145] Length = 169 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFD +Q+EL + ER ++ +S A + GD SENA+Y+ K+ + Sbjct: 1 MKTNLITRRGFDMLQRELNQLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRRIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+D S ++ FGA V + + G + +QIVG E +VS Sbjct: 61 RIRYLTKRLDQLKVVDYSPQQDGQVFFGAFVEIED-EQGTIRRFQIVGPDEIYDSKDVVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARAL+ K + D ++V P GE+ + I ++ + Sbjct: 120 IDAPMARALLKKHVDDEVTVVTPKGEQCWFINKIQY 155 >gi|207723815|ref|YP_002254213.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum MolK2] gi|206589020|emb|CAQ35982.1| transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum MolK2] Length = 187 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD +++ P G +IL V + Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182 >gi|15642709|ref|NP_232342.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586617|ref|ZP_01676402.1| transcription elongation factor GreB [Vibrio cholerae 2740-80] gi|121726717|ref|ZP_01679942.1| transcription elongation factor GreB [Vibrio cholerae V52] gi|147675721|ref|YP_001218203.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|153817456|ref|ZP_01970123.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457] gi|153821253|ref|ZP_01973920.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|227082829|ref|YP_002811380.1| transcription elongation factor GreB [Vibrio cholerae M66-2] gi|229507237|ref|ZP_04396742.1| transcription elongation factor GreB [Vibrio cholerae BX 330286] gi|229509842|ref|ZP_04399323.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|229516963|ref|ZP_04406409.1| transcription elongation factor GreB [Vibrio cholerae RC9] gi|229606743|ref|YP_002877391.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236] gi|254851252|ref|ZP_05240602.1| transcription elongation factor GreB [Vibrio cholerae MO10] gi|255744327|ref|ZP_05418279.1| transcription elongation factor GreB [Vibrio cholera CIRS 101] gi|262158563|ref|ZP_06029678.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1] gi|262170043|ref|ZP_06037732.1| transcription elongation factor GreB [Vibrio cholerae RC27] gi|298500470|ref|ZP_07010274.1| transcription elongation factor GreB [Vibrio cholerae MAK 757] gi|25453013|sp|Q9KNL7|GREB_VIBCH RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|9657312|gb|AAF95855.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549176|gb|EAX59209.1| transcription elongation factor GreB [Vibrio cholerae 2740-80] gi|121630878|gb|EAX63260.1| transcription elongation factor GreB [Vibrio cholerae V52] gi|126512042|gb|EAZ74636.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457] gi|126521185|gb|EAZ78408.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|146317604|gb|ABQ22143.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|227010717|gb|ACP06929.1| transcription elongation factor GreB [Vibrio cholerae M66-2] gi|227014601|gb|ACP10811.1| transcription elongation factor GreB [Vibrio cholerae O395] gi|229346026|gb|EEO10998.1| transcription elongation factor GreB [Vibrio cholerae RC9] gi|229353316|gb|EEO18255.1| transcription elongation factor GreB [Vibrio cholerae B33] gi|229354742|gb|EEO19663.1| transcription elongation factor GreB [Vibrio cholerae BX 330286] gi|229369398|gb|ACQ59821.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236] gi|254846957|gb|EET25371.1| transcription elongation factor GreB [Vibrio cholerae MO10] gi|255737852|gb|EET93245.1| transcription elongation factor GreB [Vibrio cholera CIRS 101] gi|262021451|gb|EEY40163.1| transcription elongation factor GreB [Vibrio cholerae RC27] gi|262029724|gb|EEY48373.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1] gi|297540639|gb|EFH76696.1| transcription elongation factor GreB [Vibrio cholerae MAK 757] Length = 161 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156 >gi|297566642|ref|YP_003685614.1| transcription elongation factor GreA [Meiothermus silvanus DSM 9946] gi|296851091|gb|ADH64106.1| transcription elongation factor GreA [Meiothermus silvanus DSM 9946] Length = 159 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T++G ++Q EL + +R I A +A GDL ENA Y A+ Q N+ R++ Sbjct: 7 VYLTAEGLKRLQDELTTLKTVKRQEIAAAFEQAIEEGDLRENAGYDEARRAQWDNDRRIS 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE+I+ RA V++ + + G +V L E ++G + + IVG EADV +G +S S Sbjct: 67 ELESILARAVVVEAGNGTPLEVGLGVSVEL-ETDTGARMSLTIVGSHEADVFNGKISNES 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ + L+GK++GD + +P G ++Y I+++ + Sbjct: 126 PMGQRLMGKKVGDRVEYPSPKGVQSYTIVELSY 158 >gi|26989039|ref|NP_744464.1| transcription elongation factor GreB [Pseudomonas putida KT2440] gi|37999626|sp|Q88KH5|GREB_PSEPK RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|24983864|gb|AAN67928.1|AE016425_5 transcription elongation factor GreB [Pseudomonas putida KT2440] Length = 162 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE GD + V+ P GE T+ + + + Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155 >gi|124515276|gb|EAY56786.1| putative transcription elongation factor GreA [Leptospirillum rubarum] gi|206601580|gb|EDZ38063.1| Putative transcription elongation factor GreA [Leptospirillum sp. Group II '5-way CG'] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 105/156 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++++P+T G++K+++EL + EERP+ I+ I+EARA+GDLSENAEY AAKE Q Sbjct: 1 MNQVPMTKAGYEKLKEELEKLKHEERPKNIQDIAEARAHGDLSENAEYHAAKERQGFINS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I A V+ + RI FGATV LV +S ++K Y +VG +EAD+++G +S Sbjct: 61 RIKELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ +ALIG G+ +++ P GE Y I ++ + Sbjct: 121 VHSPVGKALIGHSEGETVTIRVPAGEVQYTIAEIFY 156 >gi|237713952|ref|ZP_04544433.1| transcription elongation factor greA [Bacteroides sp. D1] gi|237722892|ref|ZP_04553373.1| transcription elongation factor greA [Bacteroides sp. 2_2_4] gi|262409139|ref|ZP_06085683.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22] gi|294647463|ref|ZP_06725046.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CC 2a] gi|294808933|ref|ZP_06767658.1| putative transcription elongation factor GreA [Bacteroides xylanisolvens SD CC 1b] gi|298482232|ref|ZP_07000419.1| transcription elongation factor GreA [Bacteroides sp. D22] gi|229446108|gb|EEO51899.1| transcription elongation factor greA [Bacteroides sp. D1] gi|229447414|gb|EEO53205.1| transcription elongation factor greA [Bacteroides sp. 2_2_4] gi|262352886|gb|EEZ01982.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22] gi|292637173|gb|EFF55608.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CC 2a] gi|294443868|gb|EFG12610.1| putative transcription elongation factor GreA [Bacteroides xylanisolvens SD CC 1b] gi|295085264|emb|CBK66787.1| transcription elongation factor GreA [Bacteroides xylanisolvens XB1A] gi|298271519|gb|EFI13093.1| transcription elongation factor GreA [Bacteroides sp. D22] Length = 176 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 85 LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD+ + P G+ E++ + Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 175 >gi|225375161|ref|ZP_03752382.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM 16841] gi|225213035|gb|EEG95389.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM 16841] Length = 159 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 93/155 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K +T +G K++ EL+ + R + I EAR GDLSENAEY AAK+ Q E Sbjct: 1 MDKKNILTYQGLKKLEDELQELKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E I+ AEV+ + D+I+ G V +++ ++ Y+IVG EA+ G + Sbjct: 61 ARIEDIEKILKNAEVVVEEEVDLDKISIGCNVKILDIEFDEELEYKIVGSTEANSLKGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+GK++GDI+ V PGGE Y++L + Sbjct: 121 SNESPVGKALLGKQVGDIVKVETPGGEFEYKVLSI 155 >gi|326793978|ref|YP_004311798.1| transcription elongation factor GreB [Marinomonas mediterranea MMB-1] gi|326544742|gb|ADZ89962.1| transcription elongation factor GreB [Marinomonas mediterranea MMB-1] Length = 181 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G DK+ EL++ +E+RP + + +S+A GD SENAEY K+ + R+ Sbjct: 28 YLTKEGADKLLAELKYLWKEKRPAVTQTVSDAAKQGDRSENAEYIYGKKQLREIDRRVRY 87 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D + RI FGA V+L E G + ++IVG E D S +SI SP Sbjct: 88 LEKRLDHCTVVDRAPNDVSRIFFGAWVTL-EHEDGKLETFRIVGPDELDHHSDYISIDSP 146 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+AL+ KE GD +++ GEK Y I V + Sbjct: 147 VAKALLKKEEGDEVTIRRAEGEKLYYIDSVEY 178 >gi|323497027|ref|ZP_08102050.1| transcription elongation factor [Vibrio sinaloensis DSM 21326] gi|323317871|gb|EGA70859.1| transcription elongation factor [Vibrio sinaloensis DSM 21326] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D + ++ FGA V + +G+ K+++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEIEN-EAGEVKSFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D SV P G K + + ++ + Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGYKEWFVNRISY 156 >gi|320162389|ref|YP_004175614.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] gi|319996243|dbj|BAJ65014.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] Length = 155 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ K+Q+EL + + ++R I + + EA G+L ENAEY+AAK Q E Sbjct: 1 MPTTPFLTREGYAKLQEELEYLRTKKREEIAQRLHEAMEGGELIENAEYEAAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE ++ A++I+ G+ + G+ V++ E+ + + Y IVG EA+ G + Sbjct: 61 GRIKELEYLLASAKIIEEGGTHGNVVQVGSRVTIQEEGAEPEV-YTIVGAAEANPVLGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +ALIGK+ GD + V+AP G IL+V Sbjct: 120 SNESPLGKALIGKKAGDNVQVDAPQGSFRVTILKVE 155 >gi|115350916|ref|YP_772755.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD] gi|170698517|ref|ZP_02889588.1| transcription elongation factor GreB [Burkholderia ambifaria IOP40-10] gi|171315539|ref|ZP_02904775.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5] gi|172059929|ref|YP_001807581.1| transcription elongation factor GreB [Burkholderia ambifaria MC40-6] gi|115280904|gb|ABI86421.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD] gi|170136601|gb|EDT04858.1| transcription elongation factor GreB [Burkholderia ambifaria IOP40-10] gi|171099376|gb|EDT44114.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5] gi|171992446|gb|ACB63365.1| transcription elongation factor GreB [Burkholderia ambifaria MC40-6] Length = 187 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV + G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDHGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI ++GD +++ P G + ++L V + Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|152997778|ref|YP_001342613.1| transcription elongation factor GreB [Marinomonas sp. MWYL1] gi|150838702|gb|ABR72678.1| transcription elongation factor GreB [Marinomonas sp. MWYL1] Length = 196 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G + EL++ +E+RP + + + EA A GD SENAEY K+ + R+ Sbjct: 41 YITQEGAQALLAELKYLWKEKRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 100 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D +R+ FGA V+L + +G+ K Y+IVG E D S +SI SP Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTLED-EAGNLKEYRIVGPDELDHHSSYISIDSP 159 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K+ GD + + GGEKTY I V + Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYIIDAVEY 191 >gi|17546871|ref|NP_520273.1| transcription elongation factor GreB [Ralstonia solanacearum GMI1000] gi|17429171|emb|CAD15859.1| probable transcription elongation factor (transcript cleavage factor) protein [Ralstonia solanacearum GMI1000] Length = 187 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGQVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD +++ P G + +IL V + Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEPIDILAVTY 182 >gi|68249169|ref|YP_248281.1| transcription elongation factor GreB [Haemophilus influenzae 86-028NP] gi|148825152|ref|YP_001289905.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] gi|68057368|gb|AAX87621.1| transcription elongation factor GreB [Haemophilus influenzae 86-028NP] gi|148715312|gb|ABQ97522.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] Length = 158 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156 >gi|258620411|ref|ZP_05715449.1| Transcription elongation factor greB [Vibrio mimicus VM573] gi|258626042|ref|ZP_05720898.1| Transcription elongation factor greB [Vibrio mimicus VM603] gi|262170353|ref|ZP_06038031.1| transcription elongation factor GreB [Vibrio mimicus MB-451] gi|262402001|ref|ZP_06078566.1| transcription elongation factor GreB [Vibrio sp. RC586] gi|258581693|gb|EEW06586.1| Transcription elongation factor greB [Vibrio mimicus VM603] gi|258587290|gb|EEW12001.1| Transcription elongation factor greB [Vibrio mimicus VM573] gi|261891429|gb|EEY37415.1| transcription elongation factor GreB [Vibrio mimicus MB-451] gi|262351973|gb|EEZ01104.1| transcription elongation factor GreB [Vibrio sp. RC586] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156 >gi|332185724|ref|ZP_08387471.1| transcription elongation factor GreA domain protein [Sphingomonas sp. S17] gi|332014082|gb|EGI56140.1| transcription elongation factor GreA domain protein [Sphingomonas sp. S17] Length = 158 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+K+P+ +G+DK+ Q+LR + EERP+I+ AI EARA+GDLSENAEY AAKE Q E Sbjct: 4 VEKMPMLQEGYDKLTQDLRRLK-EERPQIVDAIEEARAHGDLSENAEYHAAKERQGQIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A++E+ ++RA++ID +SGD+I FGATV+L++++ K YQIVG EAD ++G +S Sbjct: 63 SIADIEDKLSRAQIIDPKDLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAKTGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SP+ RALIG+++ + + V P G++ Y + ++ +I Sbjct: 122 YNSPLGRALIGRKVEEEVEVTVPSGDRYYLVSKIEFI 158 >gi|90412689|ref|ZP_01220690.1| transcription elongation factor GreB [Photobacterium profundum 3TCK] gi|90326264|gb|EAS42683.1| transcription elongation factor GreB [Photobacterium profundum 3TCK] Length = 156 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+D S ++ FGA V + + + ++K ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEVVKVVDYSPQQDGKVFFGAFVEIENEEA-EQKTFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+ + V P G+K + + + + Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155 >gi|198274274|ref|ZP_03206806.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135] gi|198272949|gb|EDY97218.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135] Length = 154 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 98/152 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ + Sbjct: 3 YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKATIGDAKIIDTSKLKTDTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + EI+ + + Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEIMGISF 154 >gi|327539251|gb|EGF25874.1| transcription elongation factor GreA [Rhodopirellula baltica WH47] Length = 153 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 98/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + ++ EL Sbjct: 1 MTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + ++SP Sbjct: 61 RDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPF 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+GK++G+ V+ P G+ ++IL++ + Sbjct: 121 GQGLVGKKVGETAEVDVPAGKLKFKILKIEF 151 >gi|325923368|ref|ZP_08185038.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC 19865] gi|325546138|gb|EGD17322.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC 19865] Length = 187 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 34 ITPDGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 93 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA V L + +SGD +Y++VG E D G +SI SP+ Sbjct: 94 SKRLEALRVVDTAPTDPRAVFFGAQVELEDADSGDLLHYRVVGPDETDAGRGWISIDSPL 153 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D P G+ T+ ++ V + Sbjct: 154 ARALLKKRVDDEFEAQLPSGKYTFVVVSVDY 184 >gi|253987638|ref|YP_003038994.1| transcription elongation factor GreB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779088|emb|CAQ82248.1| transcription elongation factor greb (transcript cleavage facto greb) [Photorhabdus asymbiotica] Length = 157 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +D S ++ FGA V + G+ K ++IVG E + +S Sbjct: 61 RVRYLTKSLEELRCVDYSPQQDGKVFFGAWVEIENAQ-GEIKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 I SP+ARAL+ KE+GD + V+ P GE + + ++ ++ Sbjct: 120 IDSPMARALLKKEVGDSVIVHTPTGEVMWYVNEIEYV 156 >gi|170718655|ref|YP_001783851.1| transcription elongation factor GreB [Haemophilus somnus 2336] gi|168826784|gb|ACA32155.1| transcription elongation factor GreB [Haemophilus somnus 2336] Length = 158 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + Sbjct: 1 MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D + Sbjct: 61 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALED-EQGEEKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALIGKE+ D I V P G + I ++ + Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINRIWY 156 >gi|257093983|ref|YP_003167624.1| transcription elongation factor GreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046507|gb|ACV35695.1| transcription elongation factor GreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 188 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G +++ EL + ERP+++ + A + GD SENA+Y K + R+ Sbjct: 32 YITPGGHARLRSELEHLLRVERPQVVGVVQWAASNGDRSENADYIYGKRRLREIDRRIRF 91 Query: 66 LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AE++D + + +++ FGATV++ + G + YQIVG E D G +S S Sbjct: 92 LTRRLDLAEIVDPARRENTEQVFFGATVTICD-EQGLENTYQIVGVDETDSARGHISWVS 150 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ GD + ++P G + E++ V + Sbjct: 151 PLARALLKAREGDTVRFHSPLGWRQVEVVAVDY 183 >gi|126663046|ref|ZP_01734044.1| transcription elongation factor [Flavobacteria bacterium BAL38] gi|126624704|gb|EAZ95394.1| transcription elongation factor [Flavobacteria bacterium BAL38] Length = 158 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 97/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSTVSYYTAEGLKKLRDELDQLKSIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++++E ++ A +ID S + + +TV + + +G + Y +V + EAD+++G + Sbjct: 61 MRISKMEEVVANARLIDESQLDLSKALVLSTVKIKNQANGMEMKYTLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +G++ + P G +++L++ Sbjct: 121 SVTSPIGKGLLGKSVGEVAEIIVPNGVLKFDVLEIT 156 >gi|310829433|ref|YP_003961790.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612] gi|308741167|gb|ADO38827.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612] Length = 161 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 91/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G D +++ L + + +R + I AR YGDLSENAEY AK Q EG Sbjct: 7 EELVMTQEGLDNLKKRLEYLKTVKRYEVAARIKTAREYGDLSENAEYDEAKSEQGFVEGE 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE I + +VID + + + + G+ V + + GD + Y+IVG E+D+ +S Sbjct: 67 ISELEAKIKKVKVIDDNDIHTEDVGVGSIVKVKDLEFGDTEEYKIVGSAESDIAQNKLSN 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ R LIG ++G ++++ P GE YEIL + Sbjct: 127 ESPVGRGLIGAKVGQVVTIPIPDGEVQYEILDIR 160 >gi|37524231|ref|NP_927575.1| transcription elongation factor GreB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783654|emb|CAE12506.1| Transcription elongation factor (transcript cleavage factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 157 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNKLKEELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +D S R+ FGA V + + G+ K ++IVG E + +S Sbjct: 61 RVRYLTKSLEELRCVDYSPQQDGRVFFGAWVEIEN-DQGEIKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD V+ P G+ + + ++ + Sbjct: 120 IDSPMARALLKKEVGDSAIVHTPTGKVLWYVNEIEY 155 >gi|194366636|ref|YP_002029246.1| transcription elongation factor GreB [Stenotrophomonas maltophilia R551-3] gi|194349440|gb|ACF52563.1| transcription elongation factor GreB [Stenotrophomonas maltophilia R551-3] Length = 168 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 80/151 (52%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITASGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA V L +SG Y+IVG E D G +SI SP+ Sbjct: 75 TKRLESLRVVDTTPTDPQAVFFGAWVELENVDSGQTSRYRIVGPDETDAGLGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K L D SV P G T+ ++ V + Sbjct: 135 ARALLKKRLDDEFSVELPSGPHTFAVIGVEY 165 >gi|323143848|ref|ZP_08078514.1| transcription elongation factor GreB [Succinatimonas hippei YIT 12066] gi|322416366|gb|EFY07034.1| transcription elongation factor GreB [Succinatimonas hippei YIT 12066] Length = 207 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 86/157 (54%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++ K +T +G+D + QEL + E+RP + + +S A + GD SENA+YQ K L + Sbjct: 3 IMGKPYITREGYDLLHQELDYLWLEKRPDVTQKVSWAASLGDRSENADYQYNKRLLAQID 62 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +V++ + ++ FGA V + + +IVG E ++ + Sbjct: 63 RRIRYLRGCMNNLQVVEYNHQQDGKVFFGAYVEIEADDDESLMQVRIVGGDEIFGRTNYI 122 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+A+AL+GK GD SV+ P G + + I ++ + Sbjct: 123 SVDSPMAKALLGKAEGDDASVHTPKGARIWYINRIAY 159 >gi|269958421|ref|YP_003328208.1| transcription elongation factor GreA [Anaplasma centrale str. Israel] gi|269848250|gb|ACZ48894.1| transcription elongation factor GreA [Anaplasma centrale str. Israel] Length = 166 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 110/160 (68%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 8 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119 ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EAD+ + Sbjct: 67 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQADSTGIMRYQIVGEYEADISKNM 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 +SI SP+ +L+G++ GD + V P G+ Y+I+++ ++ Sbjct: 127 ISIKSPLVLSLLGRKEGDTVEVKTPRGDYKIYQIIKIEFV 166 >gi|153853505|ref|ZP_01994885.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814] gi|149753660|gb|EDM63591.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814] Length = 160 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 88/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R I + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKKLLTYAGLKALEDELENLKVVKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G TV + + ++ +++VG EA+ G +S Sbjct: 63 RIEELEAILKNAEVVVEDEVDFDKINIGCTVKVFDITFDEEMEFKLVGSTEANSLEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD+++V G Y++L + Sbjct: 123 NESPVGQALMGKQIGDVVTVETQAGVMEYKVLDIS 157 >gi|206561354|ref|YP_002232119.1| transcription elongation factor GreB [Burkholderia cenocepacia J2315] gi|198037396|emb|CAR53331.1| transcription elongation factor [Burkholderia cenocepacia J2315] Length = 187 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV E G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI ++GD +++ P G + +IL V + Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181 >gi|282881506|ref|ZP_06290176.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] gi|281304617|gb|EFA96707.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] Length = 154 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + E PR+ AI+EAR GDLSEN EY AAK Q R+ Sbjct: 3 YMSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRIRF 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++ A VID S +S D++ + V++ + K Y+IV EA+++ G +SI SP Sbjct: 63 KQKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIHSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+AL+ K+ GD ++V P G T I +V Sbjct: 123 IAQALLDKKQGDEVTVRVPAGTITLHIDEVE 153 >gi|294625096|ref|ZP_06703742.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664556|ref|ZP_06729899.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600605|gb|EFF44696.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605664|gb|EFF48972.1| transcription elongation factor GreB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 168 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165 >gi|330721758|gb|EGG99749.1| Transcription elongation factor GreB [gamma proteobacterium IMCC2047] Length = 170 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G ++Q E +RP++ +A+SEA A GD ENAEY K+ + R+ Sbjct: 14 YITPDGRQRLQDEFDQLWHVKRPQVTQAVSEAAAQGDRPENAEYIYGKKQLREIDSRLRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +V+D R+ F A ++E +G++ Y+IVG E DV +S+ SP Sbjct: 74 LSKRLEHLKVVDRLPADQTRLFFCAW-VMLENEAGEQLEYRIVGPDEFDVHPAYISMDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+ K+ GD + V AP G YEI+ V + Sbjct: 133 TAKALMKKQTGDEVEVVAPSGSVYYEIIAVRY 164 >gi|167758613|ref|ZP_02430740.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704] gi|167663809|gb|EDS07939.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704] Length = 160 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKRLLTYAGLKALEDELENLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + ++I G TV + +K ++ ++IVG EA+ G +S Sbjct: 63 RIEELEGILKNAEVVVEDEVDYNKINVGCTVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG ++GD + V G YE+L + Sbjct: 123 NESPVGQALIGCKVGDTVEVETQAGIMEYEVLNIS 157 >gi|187925055|ref|YP_001896697.1| transcription elongation factor GreB [Burkholderia phytofirmans PsJN] gi|187716249|gb|ACD17473.1| transcription elongation factor GreB [Burkholderia phytofirmans PsJN] Length = 189 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL +RP ++K +S A + GD SEN +Y K + R+ Sbjct: 29 KNYITPAGYRRMRDELLHLIDVDRPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV ++ G+ IVG E D+ G VS Sbjct: 89 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYATQD-GETHIVTIVGIDEVDLDIGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182 >gi|153806042|ref|ZP_01958710.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185] gi|149130719|gb|EDM21925.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185] Length = 176 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 95/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q L E R+ + Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGLLEMRINK 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 85 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD+ + P G+ E++ + Sbjct: 145 IAQGLLGKKIGDVAEITVPQGKIALEVVNIS 175 >gi|170724521|ref|YP_001758547.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908] gi|169809868|gb|ACA84452.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908] Length = 161 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + Sbjct: 1 MTAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + ++D S ++ FGA V L SGD Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRVEDLTIVDYSPQQEGKVFFGAWVELEN-ESGDVVQYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + + ++ + Sbjct: 120 IDSPMARALIGKQVDDEVVVKTPSGAKEWYVNKIQY 155 >gi|209965876|ref|YP_002298791.1| transcription elongation factor GreB [Rhodospirillum centenum SW] gi|209959342|gb|ACI99978.1| transcription elongation factor GreB [Rhodospirillum centenum SW] Length = 180 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF ++Q+ELR + ERP++++ ++ A GD SEN +Y K+ + R+ Sbjct: 24 YMTPEGFRRMQEELRSLLRVERPKVVEVVAWAAGNGDRSENGDYIYGKKRLREIDRRIRF 83 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEV+D S D++ FGATV+ + G ++ IVG EAD+ G VS S Sbjct: 84 LSKRLENAEVVDASRQPRRDQVFFGATVTYA-REDGTERTVTIVGIDEADMDQGKVSWIS 142 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARAL+ GD++++ P G + E++ + + Sbjct: 143 PIARALLKAREGDLVTLRTPQGPEEIEVVAIAY 175 >gi|107022081|ref|YP_620408.1| transcription elongation factor GreB [Burkholderia cenocepacia AU 1054] gi|116689025|ref|YP_834648.1| transcription elongation factor GreB [Burkholderia cenocepacia HI2424] gi|170732314|ref|YP_001764261.1| transcription elongation factor GreB [Burkholderia cenocepacia MC0-3] gi|254246039|ref|ZP_04939360.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|105892270|gb|ABF75435.1| transcription elongation factor GreB [Burkholderia cenocepacia AU 1054] gi|116647114|gb|ABK07755.1| transcription elongation factor GreB [Burkholderia cenocepacia HI2424] gi|124870815|gb|EAY62531.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|169815556|gb|ACA90139.1| transcription elongation factor GreB [Burkholderia cenocepacia MC0-3] Length = 187 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV E G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI ++GD +++ P G + +IL V + Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181 >gi|254457427|ref|ZP_05070855.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] gi|207086219|gb|EDZ63503.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD 1] Length = 174 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 102/154 (66%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K P++ +G+D + +E ++ + E+P+ + A A GD SENA+Y AAKE + R+ Sbjct: 2 KEPMSIEGYDLLVEEFKFLLEVEKPKTAEEKLVAAAQGDRSENADYHAAKEKLRFIDKRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++I ++++ID S+ ++++FG+TV ++ ++ +++ Y + G E++ + GL+S+ Sbjct: 62 FYLNSMIQKSQIIDPSSYEHNKVSFGSTVKILNIDTDEEETYTLCGVLESEPEHGLISVH 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA+ALIGKE+ D +N P G+K YEIL++ + Sbjct: 122 SPIAKALIGKEVEDEFKINLPMGKKEYEILEIEY 155 >gi|262163952|ref|ZP_06031691.1| transcription elongation factor GreA [Vibrio mimicus VM223] gi|262172290|ref|ZP_06039968.1| transcription elongation factor GreA [Vibrio mimicus MB-451] gi|261893366|gb|EEY39352.1| transcription elongation factor GreA [Vibrio mimicus MB-451] gi|262027480|gb|EEY46146.1| transcription elongation factor GreA [Vibrio mimicus VM223] Length = 157 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG+K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 157 >gi|84624754|ref|YP_452126.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577733|ref|YP_001914662.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368694|dbj|BAE69852.1| Transcription elongation factor greB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522185|gb|ACD60130.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 168 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165 >gi|53715604|ref|YP_101596.1| transcription elongation factor GreA [Bacteroides fragilis YCH46] gi|60683548|ref|YP_213692.1| putative transcription elongation factor [Bacteroides fragilis NCTC 9343] gi|253566584|ref|ZP_04844037.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5] gi|265767453|ref|ZP_06095119.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16] gi|52218469|dbj|BAD51062.1| transcription elongation factor GreA [Bacteroides fragilis YCH46] gi|60494982|emb|CAH09800.1| putative transcription elongation factor [Bacteroides fragilis NCTC 9343] gi|251944756|gb|EES85231.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5] gi|263252758|gb|EEZ24270.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16] gi|301165062|emb|CBW24630.1| putative transcription elongation factor [Bacteroides fragilis 638R] Length = 154 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 97/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+P Sbjct: 63 LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154 >gi|259503587|ref|ZP_05746489.1| transcription elongation factor GreA [Lactobacillus antri DSM 16041] gi|259168460|gb|EEW52955.1| transcription elongation factor GreA [Lactobacillus antri DSM 16041] Length = 158 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + Sbjct: 1 MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D +G Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLNG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A+ L+G ++G+ + + P G +IL V Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPNGTMKVKILDV 157 >gi|226944394|ref|YP_002799467.1| transcription elongation factor GreB [Azotobacter vinelandii DJ] gi|226719321|gb|ACO78492.1| transcription elongation factor protein [Azotobacter vinelandii DJ] Length = 165 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA V+L +++ G++ Y+IVG E D++ L+SI +P+ Sbjct: 75 TKRLEKLQVVGERPADLNKVYFGAWVTLEDED-GEQVRYRIVGPDELDLKQNLISIDAPL 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKEL + V P GEKT+ ++ + + Sbjct: 134 ARALVGKELDAEVRVPTPTGEKTWYLVAIDY 164 >gi|167622182|ref|YP_001672476.1| transcription elongation factor GreB [Shewanella halifaxensis HAW-EB4] gi|167352204|gb|ABZ74817.1| transcription elongation factor GreB [Shewanella halifaxensis HAW-EB4] Length = 159 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K+ + Sbjct: 1 MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+D S ++ FGA V + + G+K ++IVG E + +S Sbjct: 61 RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIEN-DDGNKLQFKIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+AR L+ KE+ D + P GE+ + I ++ + Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155 >gi|332798250|ref|YP_004459749.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1] gi|332695985|gb|AEE90442.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1] Length = 158 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K + +T +G K+++EL + + +R I I +A +GD+SEN+EY AK Q Sbjct: 1 MAKKEVVLTQEGLKKMEEELEYLKSVKRREIAARIKQAIDFGDISENSEYDEAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+A LE + A++ID +S D ++ G+ V L + ++GD Y IVG EA+ Sbjct: 61 EGRIALLEEKLRNAKLIDEVDISTDVVSVGSKVKLKDLDTGDIFEYMIVGSAEANPIENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ ALIG++ G I+ V+ P G YEI+ + Sbjct: 121 ISNESPVGNALIGEKKGSIVEVSVPAGIIKYEIMDI 156 >gi|209519140|ref|ZP_03267945.1| transcription elongation factor GreB [Burkholderia sp. H160] gi|209500440|gb|EEA00491.1| transcription elongation factor GreB [Burkholderia sp. H160] Length = 189 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 29 KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV G++ IVG E D+ G VS Sbjct: 89 RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYA-TEDGEEHKVTIVGIDEVDLDIGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182 >gi|157963827|ref|YP_001503861.1| transcription elongation factor GreB [Shewanella pealeana ATCC 700345] gi|157848827|gb|ABV89326.1| transcription elongation factor GreB [Shewanella pealeana ATCC 700345] Length = 159 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K + Sbjct: 1 MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+D S ++ FGA V + + G+K ++IVG E + +S Sbjct: 61 RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIEN-DDGNKLAFKIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+AR L+ KE+ D + P GE+ + I ++ + Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155 >gi|158319500|ref|YP_001512007.1| transcription elongation factor GreA [Alkaliphilus oremlandii OhILAs] gi|166987608|sp|A8MLU4|GREA_ALKOO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|158139699|gb|ABW18011.1| transcription elongation factor GreA [Alkaliphilus oremlandii OhILAs] Length = 159 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D+ + +T++G K++ EL + R I + I +A A+GD+SEN+EY AK Q Sbjct: 2 MADREVVLTAQGLKKLEDELELLKTVRRKEIAERIKQAIAFGDISENSEYDEAKNEQAQV 61 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ +A +ID ++ D ++ G+ V + + + Y IVG EAD Sbjct: 62 EDRINKLETMLRKAVIIDEEDINTDIVSIGSIVQVNDLEFDEIVEYTIVGSTEADPYELK 121 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RAL+G ++GD++ V P G YEIL++ Sbjct: 122 ISNESPVGRALLGTKVGDVVEVQIPDGVTKYEILKIT 158 >gi|289663189|ref|ZP_06484770.1| transcription elongation factor GreB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669412|ref|ZP_06490487.1| transcription elongation factor GreB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 167 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFDAQLPAGKHTFVVMSVHY 165 >gi|170288918|ref|YP_001739156.1| transcription elongation factor GreA [Thermotoga sp. RQ2] gi|238688841|sp|B1LAX5|GREA_THESQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|170176421|gb|ACB09473.1| transcription elongation factor GreA [Thermotoga sp. RQ2] Length = 156 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I++ AE+I+ S D I G V + ++G++ ++IV QEAD + +S Sbjct: 61 RIMEIEQILSNAEIIEDSE-ENDEITLGKWVVIRNLDTGEEHKFRIVTPQEADFFAQKLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ ++L+G+++GD++ V AP G + Y+++ V Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153 >gi|260886921|ref|ZP_05898184.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|330839288|ref|YP_004413868.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|260863350|gb|EEX77850.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] gi|329747052|gb|AEC00409.1| transcription elongation factor GreA [Selenomonas sputigena ATCC 35185] Length = 156 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T +G+ K+Q++L + + R + + + A A GDLSEN+EY AK Q Sbjct: 1 MAEKRVMLTEEGYKKLQEKLDYLKSVRRIEVSERLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + +LE I +++I S D + G+TV + + +++ Y +VG EAD Sbjct: 61 EGEILDLEAKIRNSDIIQGGA-SSDTVQMGSTVVVKDVEFDEQETYTLVGSAEADPTEFK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ A+IGK++GD + V+AP G YE++++ Sbjct: 120 ISNESPVGAAIIGKKVGDRVDVHAPAGIIQYEVVEIK 156 >gi|289673217|ref|ZP_06494107.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae FF5] Length = 157 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHQALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + + + Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155 >gi|319900857|ref|YP_004160585.1| transcription elongation factor GreA [Bacteroides helcogenes P 36-108] gi|319415888|gb|ADV42999.1| transcription elongation factor GreA [Bacteroides helcogenes P 36-108] Length = 151 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 94/151 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L Sbjct: 1 MSEEGYKKLMAELKQLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S +S D + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 61 KLTIADAKIIDESKLSTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G E++ + + Sbjct: 121 AQGLLGKKVGDVAEIKVPQGMIHLEVMNISF 151 >gi|300907452|ref|ZP_07125097.1| transcription elongation factor GreB [Escherichia coli MS 84-1] gi|300400790|gb|EFJ84328.1| transcription elongation factor GreB [Escherichia coli MS 84-1] Length = 162 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFDRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162 >gi|145300940|ref|YP_001143781.1| transcription elongation factor GreB [Aeromonas salmonicida subsp. salmonicida A449] gi|142853712|gb|ABO92033.1| transcription elongation factor GreB [Aeromonas salmonicida subsp. salmonicida A449] Length = 157 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++EL + +EERP + ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNKLKEELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + ++D + ++ FGA V + + GD K ++IVG E + +S Sbjct: 61 RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEE-GDTKRFRIVGYDEIFGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD V P G+ + I + + Sbjct: 120 IDSPMARALLKKEVGDEAIVPTPVGDACWYINDISY 155 >gi|253572564|ref|ZP_04849966.1| transcription elongation factor greA [Bacteroides sp. 1_1_6] gi|298387790|ref|ZP_06997340.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14] gi|251837979|gb|EES66068.1| transcription elongation factor greA [Bacteroides sp. 1_1_6] gi|298259395|gb|EFI02269.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14] Length = 173 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 95/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 22 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 81 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 82 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 141 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GDI + P G+ E++ + Sbjct: 142 IAQGLLGKKVGDIAEITVPQGKIALEVVNIS 172 >gi|153212566|ref|ZP_01948313.1| transcription elongation factor GreB [Vibrio cholerae 1587] gi|124116437|gb|EAY35257.1| transcription elongation factor GreB [Vibrio cholerae 1587] Length = 160 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + V+ P G K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPMGMKEWFINSIEY 156 >gi|329960362|ref|ZP_08298787.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057] gi|328532800|gb|EGF59582.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057] Length = 154 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 93/152 (61%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ Sbjct: 3 YMSEEGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGVINLEVVNISF 154 >gi|161525566|ref|YP_001580578.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|189349706|ref|YP_001945334.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|221201206|ref|ZP_03574246.1| transcription elongation factor GreB [Burkholderia multivorans CGD2M] gi|221206340|ref|ZP_03579353.1| transcription elongation factor GreB [Burkholderia multivorans CGD2] gi|221213620|ref|ZP_03586594.1| transcription elongation factor GreB [Burkholderia multivorans CGD1] gi|160342995|gb|ABX16081.1| transcription elongation factor GreB [Burkholderia multivorans ATCC 17616] gi|189333728|dbj|BAG42798.1| transcription elongation factor [Burkholderia multivorans ATCC 17616] gi|221166409|gb|EED98881.1| transcription elongation factor GreB [Burkholderia multivorans CGD1] gi|221173649|gb|EEE06083.1| transcription elongation factor GreB [Burkholderia multivorans CGD2] gi|221179056|gb|EEE11463.1| transcription elongation factor GreB [Burkholderia multivorans CGD2M] Length = 187 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV + G++ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDRGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI +GD +++ P G + ++L V + Sbjct: 147 ISPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|312882877|ref|ZP_07742609.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC BAA-2122] gi|309369396|gb|EFP96916.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC BAA-2122] Length = 162 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E + E RP + K ++ A GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKAEHDYLWHERRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + ++GD K ++IVG +E + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-DAGDTKKFRIVGPEEIYGDAKEYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D V+ P GEK + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFVVHTPEGEKEWFINAISY 156 >gi|255038560|ref|YP_003089181.1| transcription elongation factor GreA [Dyadobacter fermentans DSM 18053] gi|254951316|gb|ACT96016.1| transcription elongation factor GreA [Dyadobacter fermentans DSM 18053] Length = 160 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 98/156 (62%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G +K++ EL + + R I + I+EAR GDLSENAEY AAK+ Q ++E Sbjct: 1 MAKISYYTEEGLNKLRNELNEMKTKGRTEIARQIAEARDKGDLSENAEYDAAKDAQGMHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE I++ A VID S+M +++ + V + + +G + Y +V ++EAD+++G + Sbjct: 61 MKIAKLEEILSNARVIDESSMDTSQVSVLSKVKIKNRKNGMEVTYTLVSEEEADLKAGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPI + L+GK++G+ + P G +E+L + Sbjct: 121 SVGSPIGKGLLGKKVGETTEIKVPAGMMEFEVLDIS 156 >gi|228476529|ref|ZP_04061219.1| transcription elongation factor GreA [Streptococcus salivarius SK126] gi|228251950|gb|EEK10996.1| transcription elongation factor GreA [Streptococcus salivarius SK126] Length = 160 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYVMTQAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTNDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD +++ +P G + EIL V Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157 >gi|82702992|ref|YP_412558.1| transcription elongation factor GreB [Nitrosospira multiformis ATCC 25196] gi|82411057|gb|ABB75166.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 213 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G ++ E W ERP++ +S A A GD SENA+Y K+ + R+ Sbjct: 31 KNYITPEGHKRLMDEFLWLMNRERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRI 90 Query: 64 AELENIITRAEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 L + AE+ID S RI FGATV+ + + G++K IVG E D G +S Sbjct: 91 RFLTRRLDMAEIIDPSMPREDESRIFFGATVTYINEK-GEEKIVSIVGVNEIDTTRGYIS 149 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR L+ GD+++++APGG + EIL+V + Sbjct: 150 WVSPLARTLLKAREGDVVTLHAPGGTEELEILEVRY 185 >gi|319779409|ref|YP_004130322.1| Transcription elongation factor GreB [Taylorella equigenitalis MCE9] gi|317109433|gb|ADU92179.1| Transcription elongation factor GreB [Taylorella equigenitalis MCE9] Length = 182 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G++ +++EL ERP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 27 KNYMTVTGYNSLRKELSDLVTVERPEVVQVVSWAASNGDRSENGDYIYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEVID S DR+ FGATV+ + N+ D+ IVG EAD +G +S Sbjct: 87 RFLTKRLEIAEVIDPSQQPNKDRVYFGATVTYLNPNN-DEVTVTIVGIDEADPLNGKISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ALI E G I+++ P G++ E+L++++ Sbjct: 146 ISPVAKALIKSEEGQIVTLKTPNGKQEIEVLEIVY 180 >gi|241663543|ref|YP_002981903.1| transcription elongation factor GreB [Ralstonia pickettii 12D] gi|240865570|gb|ACS63231.1| transcription elongation factor GreB [Ralstonia pickettii 12D] Length = 187 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYERLRSELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I +AEV+D S D+I FGATV+ + G++ IVG E D+ G VS Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEETTITIVGTDEVDLDIGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD + + P G + +IL+V + Sbjct: 148 ISPIARALIKAREGDTVPLRTPTGVEQIDILEVKY 182 >gi|145628952|ref|ZP_01784752.1| transcription elongation factor GreB [Haemophilus influenzae 22.1-21] gi|144979422|gb|EDJ89108.1| transcription elongation factor GreB [Haemophilus influenzae 22.1-21] Length = 156 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D + ++ FGA V L + G+ K Y+IVG E + Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SI SP+ARALIGK L D + V P G T I + Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINK 153 >gi|46198565|ref|YP_004232.1| transcription elongation factor greA [Thermus thermophilus HB27] gi|55980591|ref|YP_143888.1| transcription elongation factor GreA [Thermus thermophilus HB8] gi|18034649|gb|AAL57613.1|AF456236_1 transcription cleavage factor GreA [Thermus thermophilus] gi|46196187|gb|AAS80605.1| transcription elongation factor greA [Thermus thermophilus HB27] gi|55772004|dbj|BAD70445.1| transcription elongation factor GreA [Thermus thermophilus HB8] Length = 155 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G+ ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE++++RA +++ S D++A G V L E +G++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLSRAVIVE--NGSFDQVALGCQVEL-ETETGERLSLAIVGSHEADIFSGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 118 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 153 >gi|303230991|ref|ZP_07317734.1| transcription elongation factor GreA [Veillonella atypica ACS-049-V-Sch6] gi|302514373|gb|EFL56372.1| transcription elongation factor GreA [Veillonella atypica ACS-049-V-Sch6] Length = 157 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D + +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q Sbjct: 1 MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EG ++ELEN I A++ID ST GD ++ G+ V++++ D+ Y IVG EAD + Sbjct: 61 IEGYISELENKINTAKIIDEST-KGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK GD + V+ P G T+++L + Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157 >gi|307243775|ref|ZP_07525909.1| transcription elongation factor GreA [Peptostreptococcus stomatis DSM 17678] gi|306492851|gb|EFM64870.1| transcription elongation factor GreA [Peptostreptococcus stomatis DSM 17678] Length = 161 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T +G+DK++ EL + R + + + A ++GDLSENAEY AK+ Q E Sbjct: 6 SKEIILTQEGYDKLESELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN+ A +ID S ++ D I G+ V + +++ ++ Y IVG EAD G +S Sbjct: 66 RILKLENMTRVAVIIDESNVNLDIITVGSVVKIYDEDFDEELEYTIVGSAEADPYDGKIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G+ GD++ V P G +++ + Sbjct: 126 NESPVGKALLGRAKGDVVEVTVPDGIAKLKVVDIK 160 >gi|171057421|ref|YP_001789770.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6] gi|170774866|gb|ACB33005.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6] Length = 189 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ ++ EL ERPR+++A+S A GD SEN +Y K+ + R+ Sbjct: 32 YMTPQGWSSLRAELMTLLDVERPRVVEAVSWAAKNGDRSENGDYIYGKKRLREIDRRIRF 91 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEV D S G D++ FGATV+ GD++ I G E+D G VS S Sbjct: 92 LTKRLDIAEVADPSLHHGSDQVFFGATVTYANSR-GDERTVTIKGIDESDSLKGEVSWVS 150 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARALI GD + + PGG + E+L+V + Sbjct: 151 PIARALIKAREGDEVQLMTPGGLERLEVLEVSY 183 >gi|254850868|ref|ZP_05240218.1| transcription elongation factor GreA [Vibrio cholerae MO10] gi|255744149|ref|ZP_05418102.1| transcription elongation factor GreA [Vibrio cholera CIRS 101] gi|262155723|ref|ZP_06028847.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1] gi|262169934|ref|ZP_06037624.1| transcription elongation factor GreA [Vibrio cholerae RC27] gi|25453014|sp|Q9KU89|GREA_VIBCH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254846573|gb|EET24987.1| transcription elongation factor GreA [Vibrio cholerae MO10] gi|255738089|gb|EET93481.1| transcription elongation factor GreA [Vibrio cholera CIRS 101] gi|262021668|gb|EEY40379.1| transcription elongation factor GreA [Vibrio cholerae RC27] gi|262030434|gb|EEY49074.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1] gi|327483437|gb|AEA77844.1| Transcription elongation factor GreA [Vibrio cholerae LMA3894-4] Length = 157 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +S+ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157 >gi|221065450|ref|ZP_03541555.1| transcription elongation factor GreB [Comamonas testosteroni KF-1] gi|220710473|gb|EED65841.1| transcription elongation factor GreB [Comamonas testosteroni KF-1] Length = 188 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ Sbjct: 28 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS Sbjct: 88 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P++RAL+ +GD +++ P G + EIL V + Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181 >gi|299066253|emb|CBJ37437.1| Transcription elongation factor (Transcript cleavage factor) [Ralstonia solanacearum CMR15] Length = 187 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYTRLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I RAEV+D S D+I FGATV+ + GD+ IVG E D+ G VS Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQG-GDETTITIVGMDEVDLDKGQVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI GD +++ P G ++ +IL V + Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVESIDILAVTY 182 >gi|157373311|ref|YP_001471911.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3] gi|157315685|gb|ABV34783.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3] Length = 163 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + Sbjct: 1 MKAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S ++ FGA + L +G+ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRVEELQIVDYSPQQEGKVFFGAWIELEN-EAGEIVQYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I ++ + Sbjct: 120 IDSPMARALIGKQVDDEVVVPTPLGPKEWYINKIQY 155 >gi|317049903|ref|YP_004117551.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] gi|316951520|gb|ADU70995.1| GreA/GreB family elongation factor [Pantoea sp. At-9b] Length = 167 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E E+RP I K +S A + GD SENA+Y K L + Sbjct: 1 MKTQLITREGYNKLRAEHDHLWNEKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + +++D + ++ FGA V + G+ K ++IVG E + + Sbjct: 61 RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVEN-EQGEVKRFRIVGPDEIYGEVKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARALI KE+ D ++VN P G+K + + ++ ++ Sbjct: 120 SIDSPMARALIKKEVDDEVTVNTPEGQKLWFVNRIEYV 157 >gi|76810661|ref|YP_334421.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710b] gi|134280310|ref|ZP_01767021.1| transcription elongation factor GreB [Burkholderia pseudomallei 305] gi|167739719|ref|ZP_02412493.1| transcription elongation factor GreB [Burkholderia pseudomallei 14] gi|167825326|ref|ZP_02456797.1| transcription elongation factor GreB [Burkholderia pseudomallei 9] gi|167903804|ref|ZP_02491009.1| transcription elongation factor GreB [Burkholderia pseudomallei NCTC 13177] gi|217421177|ref|ZP_03452682.1| transcription elongation factor GreB [Burkholderia pseudomallei 576] gi|226193760|ref|ZP_03789362.1| transcription elongation factor GreB [Burkholderia pseudomallei Pakistan 9] gi|237813377|ref|YP_002897828.1| transcription elongation factor GreB [Burkholderia pseudomallei MSHR346] gi|254258154|ref|ZP_04949208.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710a] gi|76580114|gb|ABA49589.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710b] gi|134248317|gb|EBA48400.1| transcription elongation factor GreB [Burkholderia pseudomallei 305] gi|217396589|gb|EEC36606.1| transcription elongation factor GreB [Burkholderia pseudomallei 576] gi|225934065|gb|EEH30050.1| transcription elongation factor GreB [Burkholderia pseudomallei Pakistan 9] gi|237504521|gb|ACQ96839.1| transcription elongation factor GreB [Burkholderia pseudomallei MSHR346] gi|254216843|gb|EET06227.1| transcription elongation factor GreB [Burkholderia pseudomallei 1710a] Length = 187 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|66045305|ref|YP_235146.1| transcription elongation factor GreB [Pseudomonas syringae pv. syringae B728a] gi|63256012|gb|AAY37108.1| Prokaryotic transcription elongation factor GreB [Pseudomonas syringae pv. syringae B728a] gi|330899247|gb|EGH30666.1| transcription elongation factor GreB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330944671|gb|EGH46613.1| transcription elongation factor GreB [Pseudomonas syringae pv. pisi str. 1704B] gi|330973780|gb|EGH73846.1| transcription elongation factor GreB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977558|gb|EGH77502.1| transcription elongation factor GreB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 157 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + + + Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155 >gi|330958996|gb|EGH59256.1| transcription elongation factor GreB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 157 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ GA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVSYSPEQEGRVFLGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|167586480|ref|ZP_02378868.1| transcription elongation factor GreB [Burkholderia ubonensis Bu] Length = 187 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDAERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV + G++ IVG E D+ G VS Sbjct: 88 RFLTKRLDIAEVVDASRQENTDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDHGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ ++GD +++ P G + ++L V + Sbjct: 147 ISPVARALLKAKIGDTVTLMTPAGPQPIDVLDVHY 181 >gi|126726046|ref|ZP_01741888.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2150] gi|126705250|gb|EBA04341.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 78/156 (50%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KIP+T GF ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG Sbjct: 1 MEKIPLTRGGFTALEAELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE II+ AEVID M+G I FGATV++V++++ ++K YQIVG+ EA+++ G ++ Sbjct: 61 RVKELEAIISLAEVIDPVGMTG-AIKFGATVTIVDEDTDEEKTYQIVGEHEANIEQGKLN 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP++R LIGKE GD + V PGG ++YEIL++ + Sbjct: 120 LKSPLSRGLIGKEEGDSVEVKTPGGTRSYEILKIDF 155 >gi|152981655|ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] gi|151281732|gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] Length = 183 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 76/154 (49%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G +++ EL ERP +++ +S A + GD SEN +Y K +GR+ Sbjct: 26 KNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 85 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + AEV+D S G F E +GD+ I+G E D +G +S Sbjct: 86 RFLTKRLDLAEVVDPSIHHGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLNGKISWI 145 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL GD + + PGG + IL+V + Sbjct: 146 SPVARALTKAREGDTVVLKTPGGLEELLILEVTY 179 >gi|24376104|ref|NP_720147.1| transcription elongation factor GreB [Shewanella oneidensis MR-1] gi|24351133|gb|AAN57591.1|AE015894_11 transcription elongation factor GreB [Shewanella oneidensis MR-1] Length = 167 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L ++G++ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I ++ + Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKAWYINEIRY 155 >gi|156972942|ref|YP_001443849.1| transcription elongation factor [Vibrio harveyi ATCC BAA-1116] gi|156524536|gb|ABU69622.1| hypothetical protein VIBHAR_00620 [Vibrio harveyi ATCC BAA-1116] Length = 161 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D S ++ FGA V + +GD KN++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYSPKQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D +V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156 >gi|154499802|ref|ZP_02037840.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC 29799] gi|150271400|gb|EDM98657.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 89/156 (57%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + ++ + + +++ EL + + + I EAR++GDLSEN+EY AK Q Sbjct: 1 MAKEFKLSPERWKELKDELVYLKTVREKEVADQIKEARSFGDLSENSEYDEAKNEQGKLY 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+ENI+ VI+ G + G+ + +++ ++ +Y++VG QEAD +G + Sbjct: 61 SRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP RAL+GK +G+ + V AP G Y++L + Sbjct: 121 SEDSPFGRALLGKSVGEDVVVEAPAGALHYKVLSIS 156 >gi|187929352|ref|YP_001899839.1| transcription elongation factor GreB [Ralstonia pickettii 12J] gi|309781794|ref|ZP_07676527.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA] gi|187726242|gb|ACD27407.1| transcription elongation factor GreB [Ralstonia pickettii 12J] gi|308919435|gb|EFP65099.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA] Length = 187 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I +AEV+D S D+I FGATV+ + G++K IVG E D+ G VS Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEEKTITIVGMDEVDLDIGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI +GD + + P G + +IL+V + Sbjct: 148 ISPIARALIKARVGDTVPLRTPTGVEQIDILEVKY 182 >gi|124006704|ref|ZP_01691535.1| transcription elongation factor GreA [Microscilla marina ATCC 23134] gi|123987612|gb|EAY27312.1| transcription elongation factor GreA [Microscilla marina ATCC 23134] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K++ EL+ + + R + I+EAR GDLSENAEY AAK+ Q L E Sbjct: 1 MAKVSYYTKEGLKKLKDELQHLKTKGRADMAYQIAEARDKGDLSENAEYDAAKDAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE+ + A +ID S + +++ +TV + + Y +V ++EA+++ G + Sbjct: 61 LKIAKLEDTVANARIIDESNIDTSKVSILSTVKIKHQKLKKVLTYTLVSEEEANLKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SP+ + L+GK++G++ V+ P G+ +EIL++ Sbjct: 121 SVQSPVGKGLLGKKVGEVAEVHTPAGKTDFEILEIT 156 >gi|88607617|ref|YP_505838.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ] gi|88598680|gb|ABD44150.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ] Length = 166 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 6/160 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P+T G+ K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++ Sbjct: 8 RFPITKGGYQKLESELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSL----VEKNSGDKKNYQIVGDQEADVQSGL 119 ELE+ +RAEVI++S +SGD + FGATV++ + ++ + YQIVG+ EADV + Sbjct: 67 MELESKKSRAEVIEVSELSGDTVMFGATVTVSVYDEQSDTTSEVKYQIVGEYEADVSKNM 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 +SI SP+ AL+GK GD + + P G+ Y+I +V +I Sbjct: 127 ISIKSPLVLALLGKREGDSVELKTPRGDYKVYQINKVEFI 166 >gi|313115332|ref|ZP_07800807.1| transcription elongation factor GreA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622363|gb|EFQ05843.1| transcription elongation factor GreA [Faecalibacterium cf. prausnitzii KLE1255] Length = 161 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I A +ID S +S D ++ G V+++ + + Y IVG EAD +G + Sbjct: 61 NRITELEQMIKNAVIIDESELSVDNVSVGTHVTILMTGEDENEEYDIVGRTEADPLNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 S SP+ AL+GK +GD V P G Y +L + Sbjct: 121 SDESPVGHALLGKAVGDKAEVLLPTGHTVEYTVLNITH 158 >gi|163748836|ref|ZP_02156088.1| transcription elongation factor GreB [Shewanella benthica KT99] gi|161331610|gb|EDQ02415.1| transcription elongation factor GreB [Shewanella benthica KT99] Length = 161 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T KG+ + +EL++ +E RP+I K + EA A GD SENA+Y K L +G Sbjct: 1 MKALLITRKGWQALDKELKYLWKEYRPQITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S ++ FGA + L +GD Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRVEELKIVDYSPQQEGKVFFGAWIELEN-EAGDVVQYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D I V P G K + + ++ + Sbjct: 120 IDSPMARALIGKQVDDDIVVQTPSGSKEWYVNKIQY 155 >gi|312870533|ref|ZP_07730651.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] gi|311093930|gb|EFQ52256.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + Sbjct: 1 MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D SG Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A+ L+G ++G+ + + P G +IL V Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPSGTMKVKILDV 157 >gi|149917972|ref|ZP_01906466.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1] gi|149821238|gb|EDM80642.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1] Length = 164 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ K++ EL + ERPR+ ++ A A GD SENAEYQ K + R+ Sbjct: 7 KITPFGYAKLKAELEELWKVERPRVTDEVAAAAALGDRSENAEYQYGKRRLREIDRRVRW 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+ + G ++ FGA V++ + +G++K +Q+VG E DV+ G +S++SP Sbjct: 67 LNKRLKELTVVRGAPADG-KVHFGAWVTVED-EAGEQKRWQLVGSDEFDVKDGKISVNSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+G+E+GD + V P G+ IL + + Sbjct: 125 FGRALLGREVGDDVEVQRPKGDLELVILAIDY 156 >gi|21243461|ref|NP_643043.1| transcription elongation factor GreB [Xanthomonas axonopodis pv. citri str. 306] gi|25452986|sp|Q8PJ11|GREB_XANAC RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21109017|gb|AAM37579.1| transcription elongation factor and transcript cleavage [Xanthomonas axonopodis pv. citri str. 306] Length = 168 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDAGSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165 >gi|261212255|ref|ZP_05926541.1| transcription elongation factor GreA [Vibrio sp. RC341] gi|260838863|gb|EEX65514.1| transcription elongation factor GreA [Vibrio sp. RC341] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTLRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM + ++ FGATV+L++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTLIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKMEGDEVAIVTPGGNKDFEIDRVEYL 157 >gi|303228842|ref|ZP_07315655.1| transcription elongation factor GreA [Veillonella atypica ACS-134-V-Col7a] gi|302516462|gb|EFL58391.1| transcription elongation factor GreA [Veillonella atypica ACS-134-V-Col7a] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D + +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q Sbjct: 1 MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EG ++ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD + Sbjct: 61 IEGYISELENKINTAKIIDES-IKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK GD + V+ P G T+++L + Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157 >gi|218131388|ref|ZP_03460192.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697] gi|317476400|ref|ZP_07935649.1| transcription elongation factor GreA [Bacteroides eggerthii 1_2_48FAA] gi|217986320|gb|EEC52657.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697] gi|316907426|gb|EFV29131.1| transcription elongation factor GreA [Bacteroides eggerthii 1_2_48FAA] Length = 154 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 97/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ + Sbjct: 3 YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154 >gi|329956657|ref|ZP_08297230.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056] gi|328524029|gb|EGF51105.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056] Length = 154 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 97/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ + Sbjct: 3 YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMINLEVVNISF 154 >gi|28896926|ref|NP_796531.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD 2210633] gi|153837875|ref|ZP_01990542.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ3810] gi|260365887|ref|ZP_05778381.1| transcription elongation factor GreB [Vibrio parahaemolyticus K5030] gi|260877826|ref|ZP_05890181.1| transcription elongation factor GreB [Vibrio parahaemolyticus AN-5034] gi|260895525|ref|ZP_05904021.1| transcription elongation factor GreB [Vibrio parahaemolyticus Peru-466] gi|260902549|ref|ZP_05910944.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ4037] gi|31076677|sp|Q87TB8|GREB_VIBPA RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|28805134|dbj|BAC58415.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD 2210633] gi|149748738|gb|EDM59583.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ3810] gi|308088536|gb|EFO38231.1| transcription elongation factor GreB [Vibrio parahaemolyticus Peru-466] gi|308089794|gb|EFO39489.1| transcription elongation factor GreB [Vibrio parahaemolyticus AN-5034] gi|308109683|gb|EFO47223.1| transcription elongation factor GreB [Vibrio parahaemolyticus AQ4037] gi|308113424|gb|EFO50964.1| transcription elongation factor GreB [Vibrio parahaemolyticus K5030] gi|328471701|gb|EGF42578.1| transcription elongation factor GreB [Vibrio parahaemolyticus 10329] Length = 163 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + +GD K ++IVG +E + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARA++ K++ + +V P G+K + I + + Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGDKEWFINSIEY 156 >gi|260588922|ref|ZP_05854835.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] gi|260540701|gb|EEX21270.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] Length = 181 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 87/154 (56%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 25 KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 84 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S Sbjct: 85 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG GD +SV P G Y+IL + Sbjct: 145 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 178 >gi|53720171|ref|YP_109157.1| transcription elongation factor GreB [Burkholderia pseudomallei K96243] gi|53726019|ref|YP_103667.1| transcription elongation factor GreB [Burkholderia mallei ATCC 23344] gi|67643934|ref|ZP_00442677.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse 4] gi|121600632|ref|YP_992161.1| transcription elongation factor GreB [Burkholderia mallei SAVP1] gi|124385438|ref|YP_001028606.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10229] gi|126440515|ref|YP_001059961.1| transcription elongation factor GreB [Burkholderia pseudomallei 668] gi|126450620|ref|YP_001081495.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10247] gi|126454976|ref|YP_001067253.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106a] gi|166998289|ref|ZP_02264149.1| transcription elongation factor GreB [Burkholderia mallei PRL-20] gi|167720736|ref|ZP_02403972.1| transcription elongation factor GreB [Burkholderia pseudomallei DM98] gi|167816923|ref|ZP_02448603.1| transcription elongation factor GreB [Burkholderia pseudomallei 91] gi|167846828|ref|ZP_02472336.1| transcription elongation factor GreB [Burkholderia pseudomallei B7210] gi|167912070|ref|ZP_02499161.1| transcription elongation factor GreB [Burkholderia pseudomallei 112] gi|167920044|ref|ZP_02507135.1| transcription elongation factor GreB [Burkholderia pseudomallei BCC215] gi|242316946|ref|ZP_04815962.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106b] gi|254175421|ref|ZP_04882081.1| transcription elongation factor GreB [Burkholderia mallei ATCC 10399] gi|254191879|ref|ZP_04898382.1| transcription elongation factor GreB [Burkholderia pseudomallei Pasteur 52237] gi|254196029|ref|ZP_04902454.1| transcription elongation factor GreB [Burkholderia pseudomallei S13] gi|254202365|ref|ZP_04908728.1| transcription elongation factor GreB [Burkholderia mallei FMH] gi|254207699|ref|ZP_04914049.1| transcription elongation factor GreB [Burkholderia mallei JHU] gi|254298847|ref|ZP_04966297.1| transcription elongation factor GreB [Burkholderia pseudomallei 406e] gi|254356401|ref|ZP_04972677.1| transcription elongation factor GreB [Burkholderia mallei 2002721280] gi|52210585|emb|CAH36568.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52429442|gb|AAU50035.1| transcription elongation factor GreB [Burkholderia mallei ATCC 23344] gi|121229442|gb|ABM51960.1| transcription elongation factor GreB [Burkholderia mallei SAVP1] gi|124293458|gb|ABN02727.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10229] gi|126220008|gb|ABN83514.1| transcription elongation factor GreB [Burkholderia pseudomallei 668] gi|126228618|gb|ABN92158.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106a] gi|126243490|gb|ABO06583.1| transcription elongation factor GreB [Burkholderia mallei NCTC 10247] gi|147746612|gb|EDK53689.1| transcription elongation factor GreB [Burkholderia mallei FMH] gi|147751593|gb|EDK58660.1| transcription elongation factor GreB [Burkholderia mallei JHU] gi|148025398|gb|EDK83552.1| transcription elongation factor GreB [Burkholderia mallei 2002721280] gi|157809034|gb|EDO86204.1| transcription elongation factor GreB [Burkholderia pseudomallei 406e] gi|157939550|gb|EDO95220.1| transcription elongation factor GreB [Burkholderia pseudomallei Pasteur 52237] gi|160696465|gb|EDP86435.1| transcription elongation factor GreB [Burkholderia mallei ATCC 10399] gi|169652773|gb|EDS85466.1| transcription elongation factor GreB [Burkholderia pseudomallei S13] gi|238525403|gb|EEP88831.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse 4] gi|242140185|gb|EES26587.1| transcription elongation factor GreB [Burkholderia pseudomallei 1106b] gi|243065364|gb|EES47550.1| transcription elongation factor GreB [Burkholderia mallei PRL-20] Length = 187 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|70731632|ref|YP_261373.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] gi|68345931|gb|AAY93537.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+ +T G+D ++QEL + +E+RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKL-ITQDGYDALKQELDYLWREKRPDITQKVTWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ + + +V+ + R+ FGA V + + + K ++IVG E ++ + Sbjct: 60 RRVRYIRKRLEDMKVVSYAPEQEGRVFFGAWVEVEN-EAAEIKRFRIVGYDEIYLRKDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARAL+ KE+GD V+ P GE + I Q+ ++ Sbjct: 119 SIDSPMARALLKKEVGDEAVVHTPAGETCWWINQIDYV 156 >gi|332638064|ref|ZP_08416927.1| transcription elongation factor GreA [Weissella cibaria KACC 11862] Length = 161 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G KI++EL E R I I AR++GDLSEN+EYQ+AK+ Q Sbjct: 1 MAEEKTFPMTVEGKAKIEEELNTLITETRAEITGRIQIARSFGDLSENSEYQSAKDEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ L+N++ A +ID S ++ D ++ G V+ E + + Y IVG EA+ G Sbjct: 61 VEGRINTLQNMLDNAVIIDSSEIADDEVSVGKKVTFKELPDEEPETYAIVGAVEANPLEG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 +S SPIA AL+GK++GD + V P G EI+ V Sbjct: 121 KISNESPIAVALMGKKVGDQVEVPLPNGASMDVEIMAV 158 >gi|242237779|ref|YP_002985960.1| transcription elongation factor GreB [Dickeya dadantii Ech703] gi|242129836|gb|ACS84138.1| transcription elongation factor GreB [Dickeya dadantii Ech703] Length = 160 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V + +GD K ++IVG E + +SI +P+ Sbjct: 66 RKRLQIVRVVDYSPQQEGKVFFGAWVEVEN-EAGDIKRFRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + + + VN P G + + + ++ + Sbjct: 125 ARALLKKTVDEDVVVNTPAGPRVWYVNKIDY 155 >gi|224023650|ref|ZP_03642016.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM 18228] gi|224016872|gb|EEF74884.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM 18228] Length = 154 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 98/152 (64%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ ELR+ + ERP+++ AI+EAR GDLSENAEY AAKE Q L E ++ + Sbjct: 3 YMSEEGYQKLVAELRYLESVERPKVVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVTTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + EI + + Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEITGISF 154 >gi|262401668|ref|ZP_06078234.1| transcription elongation factor GreA [Vibrio sp. RC586] gi|262352085|gb|EEZ01215.1| transcription elongation factor GreA [Vibrio sp. RC586] Length = 157 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 118/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++TM + ++ FGATV++++ N+ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S++SPIAR LIGK GD +++ PGG K +EI +V ++ Sbjct: 120 SVNSPIARGLIGKLEGDEVAIATPGGNKDFEIDRVEYL 157 >gi|241764061|ref|ZP_04762099.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN] gi|241366592|gb|EER61073.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN] Length = 187 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T++G+ ++++EL ERP+++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYMTAQGYARLREELLELIDTERPKMVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D++ FGATV+ +E N G ++ I+G EAD + G VS Sbjct: 87 RFLTKRLEIAEVVDPSLHDGSDQVFFGATVTYLE-NGGTERTITILGIDEADSRQGQVSW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD IS+ +PGG E+L V + Sbjct: 146 MSPVARALLKSRVGDEISMGSPGGVLLLEVLNVRY 180 >gi|300774299|ref|ZP_07084163.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC 35910] gi|300506943|gb|EFK38077.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC 35910] Length = 156 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++ Sbjct: 4 YVTKEGLEKMKAELEQLETVERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISK 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+++I+ +++ID S + +++ TV L + ++ + +V D E+D+++G +S+++P Sbjct: 64 LKDVISTSKIIDESQLDTSKVSILTTVKLKNNATKQEQVFTLVPDNESDLKTGKISVNTP 123 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156 IA+ L+GK +G+ + P G K ++E+L + Sbjct: 124 IAKGLLGKAIGETAEITLPNGNKLSFEVLDIS 155 >gi|299529934|ref|ZP_07043362.1| Kelongation factor GreB [Comamonas testosteroni S44] gi|298722106|gb|EFI63035.1| Kelongation factor GreB [Comamonas testosteroni S44] Length = 188 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ Sbjct: 28 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D +G D++ FGATVS V+ + G ++ I+G EAD VS Sbjct: 88 RFLTKRLEIAEVVDPGVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P++RAL+ +GD +++ P G + EIL V + Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181 >gi|313677277|ref|YP_004055273.1| transcription elongation factor grea [Marivirga tractuosa DSM 4126] gi|312943975|gb|ADR23165.1| transcription elongation factor GreA [Marivirga tractuosa DSM 4126] Length = 157 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 93/156 (59%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G K+++EL + ERP+ I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSKVSYYTEEGLRKMKEELHHLKTVERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ +LE ++ A VI S + ++ + K +G + Y +V ++EA+++ G + Sbjct: 61 MKINKLETVVANARVIKESDVDTSKVGLLTKAKIKNKKNGMEVTYTMVSEEEANLKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI SPI + ++GK++G+I V+AP G+ +EIL + Sbjct: 121 SIKSPIGKGIMGKKVGEIAEVDAPAGKMEFEILDIS 156 >gi|149927812|ref|ZP_01916063.1| transcription elongation factor GreB [Limnobacter sp. MED105] gi|149823434|gb|EDM82665.1| transcription elongation factor GreB [Limnobacter sp. MED105] Length = 185 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T KG+ +++ EL + ERP ++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPKGYRRLRDELTHLVKTERPEVVSVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L AEV+D +T + I FGATV+ + G++ +IVG E D G +S Sbjct: 89 RFLTKRTEIAEVVDPATQQELESIFFGATVTYINSK-GEELTVKIVGVDEVDTAKGHISW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ + GD++ + P G EI++V ++ Sbjct: 148 ISPVARALLKAKEGDVVQLMTPAGRDELEIVEVRYV 183 >gi|238021831|ref|ZP_04602257.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147] gi|237866445|gb|EEP67487.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147] Length = 162 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 3/160 (1%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M + K +T G +Q EL +ERP I++ ++ A + GD SEN +Y K Sbjct: 1 MSEIKNYMTPAGHAALQNELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60 Query: 60 EGRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ L + A V++ T D++ F ATV+L E+ +G ++ +IVG+ E D Sbjct: 61 DRRIRFLTKRLQDAVVVNPETREPTDQVFFAATVTL-ERGNGAEQTVRIVGEDEIDAAHN 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S SP+ARALI GD + +N P G + EIL V +I Sbjct: 120 KISWKSPLARALIKAREGDSVWLNTPEGREQIEILAVEYI 159 >gi|284048763|ref|YP_003399102.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM 20731] gi|283952984|gb|ADB47787.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM 20731] Length = 172 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 96/158 (60%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q E Sbjct: 1 MAEQTILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119 GR+ LEN+I A++I + ++ + ++ G V + + + D++ Y +VG EAD + Sbjct: 61 GRILTLENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPP 120 Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++G+++G ++ V P GE Y+I+ V Sbjct: 121 RISNESPVGKAILGQKVGAVVKVTTPIGELDYKIVAVS 158 >gi|313906158|ref|ZP_07839506.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] gi|313468997|gb|EFR64351.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] Length = 161 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T G ++ EL Q +R I + + EARA GDLSENAEY AAK+ Q Sbjct: 1 MAEPKKTIMTYAGLKALESELEDLQVNKRKEIAEKLKEARAQGDLSENAEYDAAKDEQAQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ E+ENI+ A+V+ + + G + +++K ++ +QIVG EA+ G Sbjct: 61 IEARIEEIENILKNADVVVEEEADSNTVNVGCKIKVLDKTYDEELEFQIVGSTEANSLKG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RAL+G E+GD++++ P G++ YEIL + Sbjct: 121 KISNESPVGRALLGHEIGDVVTIETPAGDEQYEILVIE 158 >gi|312795407|ref|YP_004028329.1| transcription elongation factor greB [Burkholderia rhizoxinica HKI 454] gi|312167182|emb|CBW74185.1| Transcription elongation factor greB [Burkholderia rhizoxinica HKI 454] Length = 186 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYMTPEGYRRLKDELLQLIDVERPEVVRMVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV + G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDSSRQENTDQVFFGATVHYATSD-GAENQITIVGVDEVDLDRGRVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ +GD + ++ PGG + +IL V + Sbjct: 147 ISPIARALLKARIGDTVPLHTPGGIEQIDILDVHY 181 >gi|78065582|ref|YP_368351.1| transcription elongation factor GreB [Burkholderia sp. 383] gi|77966327|gb|ABB07707.1| transcription elongation factor GreB [Burkholderia sp. 383] Length = 187 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV E G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTITIVGIDEVDLDHGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI ++GD + + P G + ++L V + Sbjct: 147 ISPVARALIKAKIGDTVMLMTPAGPQPIDVLDVRY 181 >gi|255693071|ref|ZP_05416746.1| transcription elongation factor GreA [Bacteroides finegoldii DSM 17565] gi|260621111|gb|EEX43982.1| transcription elongation factor GreA [Bacteroides finegoldii DSM 17565] Length = 154 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 96/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++G++ + P G+ E++ + + Sbjct: 123 IAQGLLGKKVGEVAEITVPQGKIALEVVNISF 154 >gi|160883671|ref|ZP_02064674.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483] gi|260175216|ref|ZP_05761628.1| transcription elongation factor greA [Bacteroides sp. D2] gi|293373408|ref|ZP_06619763.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CMC 3f] gi|315923447|ref|ZP_07919687.1| transcription elongation factor greA [Bacteroides sp. D2] gi|156111084|gb|EDO12829.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483] gi|292631546|gb|EFF50169.1| putative transcription elongation factor GreA [Bacteroides ovatus SD CMC 3f] gi|313697322|gb|EFS34157.1| transcription elongation factor greA [Bacteroides sp. D2] Length = 176 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 85 LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 144 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD+ + P G+ E++ + Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 175 >gi|325662823|ref|ZP_08151392.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086546|ref|ZP_08335624.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470875|gb|EGC74104.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410379|gb|EGG89811.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 160 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G +++EL + +R + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKTILTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+E I+ AEV+ + D+I G +V + +K ++ ++IVG EA+ G Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINIGCSVLVYDKEFDEEIQFKIVGSTEANSLQGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK++GD I V G Y++L++ Sbjct: 121 ISNESPVGQALLGKKVGDEIQVETQAGVMEYKVLKIE 157 >gi|117620745|ref|YP_854834.1| transcription elongation factor GreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562152|gb|ABK39100.1| transcription elongation factor GreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 157 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QEL + +EERP + ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNKLKQELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + ++D S ++ FGA V + + G+ K ++IVG E + +S Sbjct: 61 RVRYLRKCLEELGIVDYSPAQEGKVFFGAWVEVENEE-GETKRFRIVGYDEIFERKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD V P G+ + I ++ + Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDACWYINEISY 155 >gi|284043142|ref|YP_003393482.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] gi|283947363|gb|ADB50107.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] Length = 161 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T G K++ EL E+R + I EAR +GD+SENAEY AK Q + E Sbjct: 1 MPKDVILTPDGLAKLKSELEHLSTEKRREVAARIKEAREFGDISENAEYDDAKNEQAMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE + A VID ++ D + G++V + + SG Y IVG EA+ + Sbjct: 61 SKIAQLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKL 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 S SP+ +ALIG++ G+ +V P G+ + I ++ Sbjct: 121 SNESPVGKALIGRKAGETATVQLPNGKQRELRITKI 156 >gi|255994119|ref|ZP_05427254.1| transcription elongation factor GreA [Eubacterium saphenum ATCC 49989] gi|255993787|gb|EEU03876.1| transcription elongation factor GreA [Eubacterium saphenum ATCC 49989] Length = 158 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + + +T KG ++ Q+E R + I EA AYGDLSEN+EY AAK Q E Sbjct: 1 MSETVFLTQKGLEEKQKEYDELVGVRRKEVADRIKEATAYGDLSENSEYDAAKNEQAELE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R++ LE+++ E+ID + GD + G V L ++ Y+IVG EAD + L+ Sbjct: 61 ERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 S SPI + L+ ++G+ +S++ P G+ Y+IL++ Sbjct: 121 SNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKIS 157 >gi|54307404|ref|YP_128424.1| transcription elongation factor GreB [Photobacterium profundum SS9] gi|46911824|emb|CAG18622.1| putative transcription elongation factor GreB [Photobacterium profundum SS9] Length = 156 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V+D S ++ FGA V + + + ++K ++IVG E ++ +S Sbjct: 61 RVRYLRKRLEIVKVVDYSPQQDGKVFFGAFVEIENEEA-EQKAFRIVGPDEIYGRNDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+ + V P G+K + + + + Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155 >gi|325265886|ref|ZP_08132572.1| transcription elongation factor GreB [Kingella denitrificans ATCC 33394] gi|324982524|gb|EGC18150.1| transcription elongation factor GreB [Kingella denitrificans ATCC 33394] Length = 163 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D K +T G ++Q EL +ERP I++ ++ A GD SEN +Y K Sbjct: 1 MTDTPKNYLTPAGHRRLQDELYQLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMRE 60 Query: 59 NEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + R+ L + A V+D T D++ F ATV+L E+ G ++ +IVG+ E D Sbjct: 61 IDRRIRFLTQRLANACVVDPETREATDQVFFAATVTL-ERGDGSEQVVRIVGEDEIDSAK 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +S SP+ARALI GDI+ +N P G +T EIL V + Sbjct: 120 GKISWKSPLARALIKACDGDIVRLNTPEGTETIEILAVEY 159 >gi|296533019|ref|ZP_06895667.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC 49957] gi|296266648|gb|EFH12625.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC 49957] Length = 174 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T G +Q+ELR EERP++++ +S A + GD SENA+YQ K + R+ Sbjct: 20 FYMTPSGQAALQEELRALWSEERPKVVEIVSWAASLGDRSENADYQYGKRRLREIDRRVR 79 Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + R +V+D + + D++ FGA+V+ + + + IVG EAD G +S Sbjct: 80 FLRKRLERVQVVDPAAQTRRDQVFFGASVTYA-REDDSEVSVTIVGIDEADADRGRISWV 138 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD++ + P G + E+L + + Sbjct: 139 SPVARALLKARIGDLVRIRTPAGPEEVEVLAITY 172 >gi|291533674|emb|CBL06787.1| transcription elongation factor GreA [Megamonas hypermegale ART12/1] Length = 178 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++++L + + R + + A A GDLSEN+EY AK Q Sbjct: 1 MADKRVVLTEEGLKKLEEKLEYLKSVRRLEVADRLKAAIALGDLSENSEYDDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + LE+ I +E+I + D + G TV + + + + Y IVG EAD G Sbjct: 61 EGEILTLESQIRNSEIIKADDSNKDVVHLGNTVVIKDMEYDEDETYTIVGSTEADTTEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ A++GK +G ++ V P G Y+I+++ Sbjct: 121 ISNESPVGMAILGKTVGTVVQVKVPAGTLEYKIVEIK 157 >gi|227518219|ref|ZP_03948268.1| transcription elongation factor GreA [Enterococcus faecalis TX0104] gi|227554362|ref|ZP_03984409.1| transcription elongation factor GreA [Enterococcus faecalis HH22] gi|229547587|ref|ZP_04436312.1| transcription elongation factor GreA [Enterococcus faecalis TX1322] gi|229548206|ref|ZP_04436931.1| transcription elongation factor GreA [Enterococcus faecalis ATCC 29200] gi|293382163|ref|ZP_06628106.1| transcription elongation factor GreA [Enterococcus faecalis R712] gi|293388526|ref|ZP_06633030.1| transcription elongation factor GreA [Enterococcus faecalis S613] gi|307268839|ref|ZP_07550206.1| transcription elongation factor GreA [Enterococcus faecalis TX4248] gi|307272673|ref|ZP_07553921.1| transcription elongation factor GreA [Enterococcus faecalis TX0855] gi|307275101|ref|ZP_07556255.1| transcription elongation factor GreA [Enterococcus faecalis TX2134] gi|307278545|ref|ZP_07559617.1| transcription elongation factor GreA [Enterococcus faecalis TX0860] gi|307287391|ref|ZP_07567450.1| transcription elongation factor GreA [Enterococcus faecalis TX0109] gi|307290828|ref|ZP_07570722.1| transcription elongation factor GreA [Enterococcus faecalis TX0411] gi|312900390|ref|ZP_07759700.1| transcription elongation factor GreA [Enterococcus faecalis TX0470] gi|312902920|ref|ZP_07762117.1| transcription elongation factor GreA [Enterococcus faecalis TX0635] gi|312905741|ref|ZP_07764763.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 512] gi|312909063|ref|ZP_07767923.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 516] gi|312952203|ref|ZP_07771081.1| transcription elongation factor GreA [Enterococcus faecalis TX0102] gi|227074315|gb|EEI12278.1| transcription elongation factor GreA [Enterococcus faecalis TX0104] gi|227176508|gb|EEI57480.1| transcription elongation factor GreA [Enterococcus faecalis HH22] gi|229306685|gb|EEN72681.1| transcription elongation factor GreA [Enterococcus faecalis ATCC 29200] gi|229307277|gb|EEN73264.1| transcription elongation factor GreA [Enterococcus faecalis TX1322] gi|291080446|gb|EFE17810.1| transcription elongation factor GreA [Enterococcus faecalis R712] gi|291082130|gb|EFE19093.1| transcription elongation factor GreA [Enterococcus faecalis S613] gi|306498137|gb|EFM67660.1| transcription elongation factor GreA [Enterococcus faecalis TX0411] gi|306501564|gb|EFM70860.1| transcription elongation factor GreA [Enterococcus faecalis TX0109] gi|306504782|gb|EFM73980.1| transcription elongation factor GreA [Enterococcus faecalis TX0860] gi|306508219|gb|EFM77335.1| transcription elongation factor GreA [Enterococcus faecalis TX2134] gi|306510668|gb|EFM79690.1| transcription elongation factor GreA [Enterococcus faecalis TX0855] gi|306514843|gb|EFM83391.1| transcription elongation factor GreA [Enterococcus faecalis TX4248] gi|310628220|gb|EFQ11503.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 512] gi|310629859|gb|EFQ13142.1| transcription elongation factor GreA [Enterococcus faecalis TX0102] gi|310633692|gb|EFQ16975.1| transcription elongation factor GreA [Enterococcus faecalis TX0635] gi|311290625|gb|EFQ69181.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO 516] gi|311292480|gb|EFQ71036.1| transcription elongation factor GreA [Enterococcus faecalis TX0470] gi|315028152|gb|EFT40084.1| transcription elongation factor GreA [Enterococcus faecalis TX2137] gi|315030868|gb|EFT42800.1| transcription elongation factor GreA [Enterococcus faecalis TX4000] gi|315032284|gb|EFT44216.1| transcription elongation factor GreA [Enterococcus faecalis TX0017] gi|315036236|gb|EFT48168.1| transcription elongation factor GreA [Enterococcus faecalis TX0027] gi|315145421|gb|EFT89437.1| transcription elongation factor GreA [Enterococcus faecalis TX2141] gi|315148786|gb|EFT92802.1| transcription elongation factor GreA [Enterococcus faecalis TX4244] gi|315151674|gb|EFT95690.1| transcription elongation factor GreA [Enterococcus faecalis TX0012] gi|315154526|gb|EFT98542.1| transcription elongation factor GreA [Enterococcus faecalis TX0031] gi|315156395|gb|EFU00412.1| transcription elongation factor GreA [Enterococcus faecalis TX0043] gi|315160114|gb|EFU04131.1| transcription elongation factor GreA [Enterococcus faecalis TX0312] gi|315163267|gb|EFU07284.1| transcription elongation factor GreA [Enterococcus faecalis TX0645] gi|315165929|gb|EFU09946.1| transcription elongation factor GreA [Enterococcus faecalis TX1302] gi|315169337|gb|EFU13354.1| transcription elongation factor GreA [Enterococcus faecalis TX1341] gi|315171809|gb|EFU15826.1| transcription elongation factor GreA [Enterococcus faecalis TX1342] gi|315174754|gb|EFU18771.1| transcription elongation factor GreA [Enterococcus faecalis TX1346] gi|315576267|gb|EFU88458.1| transcription elongation factor GreA [Enterococcus faecalis TX0309B] gi|315578907|gb|EFU91098.1| transcription elongation factor GreA [Enterococcus faecalis TX0630] gi|315582758|gb|EFU94949.1| transcription elongation factor GreA [Enterococcus faecalis TX0309A] gi|327536067|gb|AEA94901.1| transcription elongation factor GreA [Enterococcus faecalis OG1RF] gi|329573310|gb|EGG54923.1| transcription elongation factor GreA [Enterococcus faecalis TX1467] Length = 188 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 30 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 89 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG Sbjct: 90 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 149 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+LGD + + PGG+ T +I +V Sbjct: 150 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 186 >gi|23015545|ref|ZP_00055318.1| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K + +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 27 KNYMRPQGFAALKAELSHLHKVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D D++ FGATV+ ++ IVG EAD++ GL+S Sbjct: 87 RFLTKRMESAHVVDPDQQKNRDQVFFGATVTYANARD-EEITVTIVGIDEADLERGLISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD + V P G + E++ + + Sbjct: 146 ISPVARALLKASEGDTVPVRTPSGTEMIEVVAIRY 180 >gi|167895419|ref|ZP_02482821.1| transcription elongation factor GreB [Burkholderia pseudomallei 7894] gi|254181033|ref|ZP_04887631.1| transcription elongation factor GreB [Burkholderia pseudomallei 1655] gi|184211572|gb|EDU08615.1| transcription elongation factor GreB [Burkholderia pseudomallei 1655] Length = 186 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 27 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 86 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS Sbjct: 87 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G + ++L V + Sbjct: 146 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 180 >gi|229822854|ref|ZP_04448924.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271] gi|229787667|gb|EEP23781.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271] Length = 159 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T +G K++ EL + +R II+ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MEEKVYPMTLEGKAKLEAELEDLKVNKRKEIIERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR++ +E +I A++ID ++ D + G TVS +E D+++Y IVG EAD Sbjct: 61 EGRISVIEKMIRFAQIIDDRDVADDVVTLGRTVSFIELPGSDEESYTIVGSAEADPLEAK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+A+IGK+LGD+++V PGG +I ++ Sbjct: 121 ISNDSPIAKAIIGKKLGDVVTVETPGGSFDLKITKIE 157 >gi|330827878|ref|YP_004390830.1| transcription elongation factor GreB [Aeromonas veronii B565] gi|328803014|gb|AEB48213.1| transcription elongation factor GreB [Aeromonas veronii B565] Length = 157 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++EL + ++ERP + + ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTKLITREGYNKLKEELDFLWRQERPEVTRKVAWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + ++D + ++ FGA V + + G+ K ++IVG E + +S Sbjct: 61 RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEE-GETKRFRIVGYDEIFERKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ KE+GD V P G+ + I ++ + Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDVCWYINEISY 155 >gi|225569857|ref|ZP_03778882.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM 15053] gi|225161327|gb|EEG73946.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM 15053] Length = 160 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 87/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKKLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G V + +K ++ ++IVG EA+ G +S Sbjct: 63 RIEELEGILKNAEVVVEDEVDFDKINVGCAVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD + V GE Y++L++ Sbjct: 123 NESPVGQALMGKKVGDTVKVETQAGEMAYKVLEIS 157 >gi|329901876|ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] gi|327548968|gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 76/152 (50%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T GF ++++EL +RP ++ + A + GD SEN +Y K + R+ Sbjct: 30 YMTPAGFQRMREELLHLIDVDRPEVVHIVHWAASNGDRSENGDYIYGKRRLREIDRRIRF 89 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AEV+D + G+ F E ++G++ IVG E D G +S SP Sbjct: 90 LTKRLDVAEVVDPTIHHGNEQVFFGATVRYENSAGEQHVITIVGIDELDPLHGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARA+ +GD I++ P G + +IL+V + Sbjct: 150 VARAITKSRVGDTITLKTPSGVEELQILEVTY 181 >gi|313206078|ref|YP_004045255.1| transcription elongation factor grea [Riemerella anatipestifer DSM 15868] gi|312445394|gb|ADQ81749.1| transcription elongation factor GreA [Riemerella anatipestifer DSM 15868] gi|315023743|gb|EFT36746.1| Transcription elongation factor GreA [Riemerella anatipestifer RA-YM] gi|325336482|gb|ADZ12756.1| Transcription elongation factor [Riemerella anatipestifer RA-GD] Length = 155 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q L E ++++ Sbjct: 3 YVTKEGLEKMKAELEQLESVERPKITQQIAEARDKGDLSENAEYDAAKEAQGLLEMKISK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+++I ++VID S + +++ TV L K + ++ + +V D E+D++SG +S+++P Sbjct: 63 LKDLIATSKVIDESQLDISKVSILTTVKLFNKATKKEQVFTLVPDNESDLKSGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156 IA+ L+GK++G+ + P G + T+E+L + Sbjct: 123 IAKGLLGKKVGETAEITLPNGNQLTFEVLDIS 154 >gi|218133837|ref|ZP_03462641.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC 43243] gi|217991212|gb|EEC57218.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC 43243] Length = 160 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 MV+ K +T G +++ EL+ + R + + + EARA GDLSENAEY AAK+ Q Sbjct: 1 MVENKKNILTYTGLKQLEDELQQLKVVRRQEVAEKLKEARAQGDLSENAEYDAAKDEQRD 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ELENI+ AEV+ + + D+I G V L + ++ + IVG EA+ Sbjct: 61 IEARIEELENILKNAEVVVETEVDSDKINIGCIVKLFDFEFDEELEFSIVGSTEANSLKN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ ALIGK++GD+I V GE Y++L + Sbjct: 121 KISNESPLGSALIGKKVGDVIKVETQMGEVEYKVLSIS 158 >gi|169335600|ref|ZP_02862793.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM 17244] gi|169258338|gb|EDS72304.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM 17244] Length = 157 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + ++ KG+ +++++L + + +R + I AR +GDLSENAEY AK+ Q Sbjct: 1 MADKEVILSKKGYKELEEKLNYLKDVKRHEVASKIKAAREFGDLSENAEYDEAKQEQGFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + E+E + A + D + + ++ G+ V + + + ++ Y IVG +E D+ + Sbjct: 61 EGEIREIEYKLKNAVIFDDANKASGVVSLGSDVKVYDTDFDEEVVYTIVGSEEVDLDNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK++G+I V P G +IL+V Sbjct: 121 ISNESPIGSALLGKKVGEIAKVQVPDGIVDLKILEVK 157 >gi|320160999|ref|YP_004174223.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] gi|319994852|dbj|BAJ63623.1| transcription elongation factor GreA [Anaerolinea thermophila UNI-1] Length = 155 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T+ G ++Q+EL + + R + K + A GDLSENA+Y AKE Q E Sbjct: 1 MAEIHYLTADGLRRLQEELEYLKGPAREELSKRLRFAIQQGDLSENADYIQAKEEQGFLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL I+ +I+ + D + GA V++ E+ + + YQ+VG +EAD + + Sbjct: 61 GRILELTQILNNYVLIEENNNHKDVVNLGAKVTIQEEGF-EPETYQVVGPKEADPKKNRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI +ALIG+ +G++++ P G+ T++IL + Sbjct: 120 SHESPIGKALIGRGVGEVVTAETPTGKITFKILSIE 155 >gi|134295030|ref|YP_001118765.1| transcription elongation factor GreB [Burkholderia vietnamiensis G4] gi|134138187|gb|ABO53930.1| transcription elongation factor GreB [Burkholderia vietnamiensis G4] Length = 187 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV + G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTVTIVGIDEVDLDRGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI ++GD +++ P G + ++L V + Sbjct: 147 ISPIARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|55820339|ref|YP_138781.1| transcription elongation factor GreA [Streptococcus thermophilus LMG 18311] gi|55822230|ref|YP_140671.1| transcription elongation factor GreA [Streptococcus thermophilus CNRZ1066] gi|81559864|sp|Q5M1J6|GREA_STRT1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81561040|sp|Q5M638|GREA_STRT2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|55736324|gb|AAV59966.1| transcription elongation factor [Streptococcus thermophilus LMG 18311] gi|55738215|gb|AAV61856.1| transcription elongation factor [Streptococcus thermophilus CNRZ1066] gi|312277654|gb|ADQ62311.1| Transcription elongation factor greA [Streptococcus thermophilus ND03] Length = 160 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD +++ +P G + EIL V Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157 >gi|332885551|gb|EGK05797.1| hypothetical protein HMPREF9456_02061 [Dysgonomonas mossii DSM 22836] Length = 156 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 98/155 (63%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T++G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MAITYMTAEGYKKLKEEINTLETTERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+++N++ A +I+ ++ D + V++ + K Y IV + EA+++ ++ Sbjct: 61 KIAQMKNLLANARLINEDSIGTDVVQILNKVTIRNTKNNQKMTYTIVAESEANLKENKMA 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++PIA+ L+GK++GD+ + P G ++EI+ + Sbjct: 121 VNTPIAQGLMGKKVGDVAEIKVPSGIMSFEIMDIS 155 >gi|325524704|gb|EGD02693.1| transcription elongation factor GreB [Burkholderia sp. TJI49] Length = 187 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S D++ FGATV + G+ IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDRGCVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI +GD +++ P G + ++L V + Sbjct: 147 ISPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181 >gi|28869465|ref|NP_792084.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968119|ref|ZP_03396264.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|301383559|ref|ZP_07231977.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato Max13] gi|302058446|ref|ZP_07249987.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato K40] gi|302133441|ref|ZP_07259431.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999581|sp|Q883T5|GREB_PSESM RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|28852706|gb|AAO55779.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213927099|gb|EEB60649.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|330875597|gb|EGH09746.1| transcription elongation factor GreB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016245|gb|EGH96301.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 157 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K +++VG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRVVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|212692849|ref|ZP_03300977.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855] gi|237709534|ref|ZP_04540015.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA] gi|237724871|ref|ZP_04555352.1| transcription elongation factor GreA [Bacteroides sp. D4] gi|265754743|ref|ZP_06089795.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA] gi|212664638|gb|EEB25210.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855] gi|229436609|gb|EEO46686.1| transcription elongation factor GreA [Bacteroides dorei 5_1_36/D4] gi|229456590|gb|EEO62311.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA] gi|263234857|gb|EEZ20425.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA] Length = 154 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++ Sbjct: 3 YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKSTIGDAKIIDTSKMNADTVQILTKVELKNVKTGMKMVYTIVAESEANLKLGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + E++ + + Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154 >gi|117922445|ref|YP_871637.1| transcription elongation factor GreB [Shewanella sp. ANA-3] gi|117614777|gb|ABK50231.1| transcription elongation factor GreB [Shewanella sp. ANA-3] Length = 167 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L +G+ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGECVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I + + Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155 >gi|260771984|ref|ZP_05880901.1| transcription elongation factor GreB [Vibrio metschnikovii CIP 69.14] gi|260612851|gb|EEX38053.1| transcription elongation factor GreB [Vibrio metschnikovii CIP 69.14] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K++QE E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYEKLKQEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ +++D S ++ FGA V + +G+ K +IVG +E + Sbjct: 61 RVRYLRKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEMKTLRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ + ++V P G+K + I + + Sbjct: 120 SIDSPMARALLKKQVDEEVTVKTPTGDKLWFINAIRY 156 >gi|167837497|ref|ZP_02464380.1| transcription elongation factor GreB [Burkholderia thailandensis MSMB43] Length = 187 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|150003999|ref|YP_001298743.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC 8482] gi|254880754|ref|ZP_05253464.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA] gi|294778035|ref|ZP_06743469.1| putative transcription elongation factor GreA [Bacteroides vulgatus PC510] gi|319639765|ref|ZP_07994495.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A] gi|149932423|gb|ABR39121.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC 8482] gi|254833547|gb|EET13856.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA] gi|294448093|gb|EFG16659.1| putative transcription elongation factor GreA [Bacteroides vulgatus PC510] gi|317388582|gb|EFV69431.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A] Length = 154 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 102/152 (67%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++ Sbjct: 3 YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKSTIGDAKIIDTSKMNADTVQILTKVELKNAKTGMKMVYTIVAESEANLKLGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G+ + E++ + + Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154 >gi|153833935|ref|ZP_01986602.1| transcription elongation factor GreB [Vibrio harveyi HY01] gi|148869773|gb|EDL68750.1| transcription elongation factor GreB [Vibrio harveyi HY01] Length = 161 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +++D S ++ FGA V + +GD KN++IVG E G + Sbjct: 61 RVRYLRKRLEQVKMVDYSPQQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D +V P G K + I + + Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156 >gi|289550623|ref|YP_003471527.1| Transcription elongation factor GreA [Staphylococcus lugdunensis HKU09-01] gi|315658118|ref|ZP_07910990.1| transcription elongation factor GreA [Staphylococcus lugdunensis M23590] gi|289180155|gb|ADC87400.1| Transcription elongation factor GreA [Staphylococcus lugdunensis HKU09-01] gi|315496447|gb|EFU84770.1| transcription elongation factor GreA [Staphylococcus lugdunensis M23590] Length = 158 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G+D ++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYDNLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ T + + G TV+ VE ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMLRYALIIE-DTGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A++LIGK L D + V P GGE +I+ + Sbjct: 124 ESPMAKSLIGKGLNDEVRVQLPNGGEIRVKIVDIK 158 >gi|34541325|ref|NP_905804.1| transcription elongation factor GreA [Porphyromonas gingivalis W83] gi|188994287|ref|YP_001928539.1| putative transcription elongation factor [Porphyromonas gingivalis ATCC 33277] gi|34397641|gb|AAQ66703.1| transcription elongation factor GreA [Porphyromonas gingivalis W83] gi|188593967|dbj|BAG32942.1| putative transcription elongation factor [Porphyromonas gingivalis ATCC 33277] Length = 156 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 96/151 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+DKI EL + +RP I + I+EAR GDLSENAEY AAKE Q + E ++A+ Sbjct: 5 YITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILETKIAQ 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A +ID S +S + + V++ +G Y +V D EA+++ +S+++P Sbjct: 65 LKGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKISVNTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD++S+ P G +EI+ + Sbjct: 125 IAQGLMGKKIGDLVSIKVPSGLVEFEIIDIT 155 >gi|167563692|ref|ZP_02356608.1| transcription elongation factor GreB [Burkholderia oklahomensis EO147] gi|167570842|ref|ZP_02363716.1| transcription elongation factor GreB [Burkholderia oklahomensis C6786] Length = 187 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|299535716|ref|ZP_07049037.1| transcription elongation factor GreA [Lysinibacillus fusiformis ZC1] gi|298728916|gb|EFI69470.1| transcription elongation factor GreA [Lysinibacillus fusiformis ZC1] Length = 162 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR Sbjct: 5 KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSG 118 ++ L+++I A +I ++ G TV+ VE +G D+++Y IVG EAD Sbjct: 65 ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+G+ G+ + V PGGE +IL + Sbjct: 125 RISNESPIAKGLLGRAEGEEVVVQTPGGEMKVKILSIK 162 >gi|160887890|ref|ZP_02068893.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492] gi|270294851|ref|ZP_06201052.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477839|ref|ZP_07937025.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36] gi|156862576|gb|EDO56007.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492] gi|270274098|gb|EFA19959.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905975|gb|EFV27743.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36] Length = 154 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 92/152 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ Sbjct: 3 YMSEDGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GDI + P G E++ + + Sbjct: 123 IAQGLLGKKVGDIAEIKVPQGMINLEVVNISF 154 >gi|71734764|ref|YP_274255.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555317|gb|AAZ34528.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329094|gb|EFW85092.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 157 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 155 >gi|160897466|ref|YP_001563048.1| transcription elongation factor GreB [Delftia acidovorans SPH-1] gi|160363050|gb|ABX34663.1| transcription elongation factor GreB [Delftia acidovorans SPH-1] Length = 188 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +GF++++ EL ERPRI++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S +G ++I FGATV+ V+ + G+++ I+G EAD VS Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSEQIYFGATVTYVD-DEGEERTITIMGIDEADSARQQVSW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P++RAL+ +GD +++ P G +T E+L+V + Sbjct: 146 IAPVSRALLKARVGDEVALPTPAGVRTLEVLEVTY 180 >gi|296160041|ref|ZP_06842861.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295889787|gb|EFG69585.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 189 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 29 KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE++D S D++ FGATV G+ IVG E D+ VS Sbjct: 89 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYA-TEDGEVHTVTIVGIDEVDLDIAHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182 >gi|295696559|ref|YP_003589797.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] gi|295412161|gb|ADG06653.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912] Length = 158 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K+++EL W + E+R + + + AR+YGDLSEN+EY AAKE Q E R+ + Sbjct: 8 YMTEEGLRKLKEELEWLKTEKRAEVKERLKIARSYGDLSENSEYDAAKEEQAFVESRILQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ I RA++I ++ G+TV++ E G ++ Y IVG EAD +S SP Sbjct: 68 LEDQIRRAKIIREEDRVEGVVSIGSTVTIRELPDGPEETYTIVGTAEADPGKFRISNESP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I L+G+ G+ + + P GE + ILQ+ Sbjct: 128 IGAGLLGRRAGEEVGIQTPAGEILFRILQIR 158 >gi|325288417|ref|YP_004264598.1| transcription elongation factor GreA [Syntrophobotulus glycolicus DSM 8271] gi|324963818|gb|ADY54597.1| transcription elongation factor GreA [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G K++ EL + R + + I +A +GD+SEN+EY AK Q Sbjct: 1 MPEKEVILTLDGLKKLEDELENLKTHRRKEVAERIKQAIEFGDISENSEYDDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE I+ A VID D ++ G+TV L + G+ + Y IVG EAD Sbjct: 61 EGRIITLEKILRNARVID-DNEERDFVSLGSTVLLKDIEFGETEEYTIVGSAEADPAGNK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++G+ G ++ VN P G YEI+ + Sbjct: 120 ISNESPVGKAVLGQAKGSVVEVNVPAGILRYEIMDIR 156 >gi|329119869|ref|ZP_08248543.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC BAA-1200] gi|327464025|gb|EGF10336.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC BAA-1200] Length = 190 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 35 YITPAGWQALKDELYSLVNKERPEIVQVVNWAASNGDRSENGDYLYGKRRMREIDRRIRF 94 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+VID T D++ FGATV+L+ + +G ++ IVG E D +S S Sbjct: 95 LTKRLEAAQVIDPETREATDQVFFGATVTLL-RGNGSEQVVSIVGIDETDAARNKISWIS 153 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+AR LI GD + + P G + EIL+V +I Sbjct: 154 PLARCLIKAREGDAVVLRTPEGREDIEILEVAYI 187 >gi|269959400|ref|ZP_06173783.1| Transcription elongation factor greB [Vibrio harveyi 1DA3] gi|269835837|gb|EEZ89913.1| Transcription elongation factor greB [Vibrio harveyi 1DA3] Length = 161 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + + +V+D S ++ FGA V + +GD KN++IVG E G + Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D +V P G K + + + + Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFLNSIRY 156 >gi|91224988|ref|ZP_01260247.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01] gi|269965882|ref|ZP_06179975.1| Transcription elongation factor greB [Vibrio alginolyticus 40B] gi|91190234|gb|EAS76504.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01] gi|269829435|gb|EEZ83676.1| Transcription elongation factor greB [Vibrio alginolyticus 40B] Length = 163 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARA++ K++ + +V P GEK + I + + Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156 >gi|320450471|ref|YP_004202567.1| transcription cleavage factor GreA [Thermus scotoductus SA-01] gi|320150640|gb|ADW22018.1| transcription cleavage factor GreA [Thermus scotoductus SA-01] Length = 156 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELHHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154 >gi|322373858|ref|ZP_08048393.1| transcription elongation factor GreA [Streptococcus sp. C150] gi|321277230|gb|EFX54300.1| transcription elongation factor GreA [Streptococcus sp. C150] Length = 160 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD +++ +P G + EIL V Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157 >gi|167581001|ref|ZP_02373875.1| transcription elongation factor GreB [Burkholderia thailandensis TXDOH] Length = 187 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|116627175|ref|YP_819794.1| transcription elongation factor GreA [Streptococcus thermophilus LMD-9] gi|122268222|sp|Q03MH4|GREA_STRTD RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116100452|gb|ABJ65598.1| transcription elongation factor GreA [Streptococcus thermophilus LMD-9] Length = 160 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD +++ +P G + EIL V Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157 >gi|113972137|ref|YP_735930.1| transcription elongation factor GreB [Shewanella sp. MR-4] gi|113886821|gb|ABI40873.1| transcription elongation factor GreB [Shewanella sp. MR-4] Length = 167 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S +I FGA L +G++ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGERVRYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALIGK++ D + V P G K + I + + Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155 >gi|325916905|ref|ZP_08179150.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC 35937] gi|325536851|gb|EGD08602.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC 35937] Length = 167 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHSRLKVELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAVLGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFEAQLPAGKHTFVVVSVDY 165 >gi|167763703|ref|ZP_02435830.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC 43183] gi|167697819|gb|EDS14398.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC 43183] Length = 154 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 97/152 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ + Sbjct: 3 YMSEEGYNKLLADLKQLETIERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154 >gi|126701179|ref|YP_001090076.1| transcription elongation factor GreA [Clostridium difficile 630] gi|254977179|ref|ZP_05273651.1| transcription elongation factor [Clostridium difficile QCD-66c26] gi|255094509|ref|ZP_05323987.1| transcription elongation factor [Clostridium difficile CIP 107932] gi|255102765|ref|ZP_05331742.1| transcription elongation factor [Clostridium difficile QCD-63q42] gi|255308586|ref|ZP_05352757.1| transcription elongation factor [Clostridium difficile ATCC 43255] gi|255316260|ref|ZP_05357843.1| transcription elongation factor [Clostridium difficile QCD-76w55] gi|255518921|ref|ZP_05386597.1| transcription elongation factor [Clostridium difficile QCD-97b34] gi|255652100|ref|ZP_05399002.1| transcription elongation factor [Clostridium difficile QCD-37x79] gi|255657503|ref|ZP_05402912.1| transcription elongation factor [Clostridium difficile QCD-23m63] gi|260685073|ref|YP_003216358.1| transcription elongation factor GreA [Clostridium difficile CD196] gi|260688731|ref|YP_003219865.1| transcription elongation factor GreA [Clostridium difficile R20291] gi|296452825|ref|ZP_06894512.1| transcription elongation factor GreA [Clostridium difficile NAP08] gi|296879923|ref|ZP_06903895.1| transcription elongation factor GreA [Clostridium difficile NAP07] gi|306521834|ref|ZP_07408181.1| transcription elongation factor GreA [Clostridium difficile QCD-32g58] gi|123066490|sp|Q181F4|GREA_CLOD6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|115252616|emb|CAJ70459.1| Transcription elongation factor greA (Transcript cleavage factor GreA) [Clostridium difficile] gi|260211236|emb|CBA66757.1| transcription elongation factor grea [Clostridium difficile CD196] gi|260214748|emb|CBE07439.1| transcription elongation factor grea [Clostridium difficile R20291] gi|296258373|gb|EFH05281.1| transcription elongation factor GreA [Clostridium difficile NAP08] gi|296429037|gb|EFH14912.1| transcription elongation factor GreA [Clostridium difficile NAP07] Length = 159 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 91/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T +G+DK+++EL + +R + + I A ++GDLSENAEY AK+ Q E R Sbjct: 5 KEFLLTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEER 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN++ +A +ID S + + + G+ V + + ++ Y IVG EAD G +S Sbjct: 65 ILKLENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G+ +++ V P G +EIL++ Sbjct: 125 ESPVGKALLGRAAKEVVEVQVPDGVAKFEILEIR 158 >gi|262392646|ref|YP_003284500.1| transcription elongation factor GreB [Vibrio sp. Ex25] gi|262336240|gb|ACY50035.1| transcription elongation factor GreB [Vibrio sp. Ex25] Length = 163 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L + ++D S ++ FGA V + +G+ K ++IVG +E + Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARA++ K++ + +V P GEK + I + + Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156 >gi|266624959|ref|ZP_06117894.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] gi|288863148|gb|EFC95446.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] Length = 160 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKNILTYEGLKRYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK+ GD++ V G Y++L++ Sbjct: 121 ISNESPVGQALMGKKAGDVVDVETQAGVIQYKVLEIQ 157 >gi|30249800|ref|NP_841870.1| transcription elongation factor GreB [Nitrosomonas europaea ATCC 19718] gi|30180837|emb|CAD85759.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 182 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ Sbjct: 26 KNYITPGGYQRLKDEFDQLWRVERPELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRL 85 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE+ID D++ FGATV++ + G+++ Y IVG EA+ G +S Sbjct: 86 RFLSRRLDNAEIIDPKQRGECDQVFFGATVTVCNQR-GEEQTYSIVGIDEAEPGRGWISW 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+AL+ GD++ + PGG + E++++ + Sbjct: 145 ISPLAKALLKAREGDVVPLQTPGGPQELEVVEIRY 179 >gi|91784882|ref|YP_560088.1| transcription elongation factor GreB [Burkholderia xenovorans LB400] gi|91688836|gb|ABE32036.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 189 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 29 KNYITPAGYRRMRDELLHLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE++D S D++ FGATV G+ IVG E D+ VS Sbjct: 89 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYA-TEDGEVHTVTIVGIDEVDLDIAHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD +++ P G + +IL V + Sbjct: 148 ISPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182 >gi|134095318|ref|YP_001100393.1| transcription elongation factor and transcript cleavage [Herminiimonas arsenicoxydans] gi|133739221|emb|CAL62270.1| Transcription elongation factor GreB (Transcript cleavage factor GreB) [Herminiimonas arsenicoxydans] Length = 182 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 76/154 (49%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G +++ EL ERP +++ +S A + GD SEN +Y K +GR+ Sbjct: 24 KNYMTPQGHLRMKNELLNLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 83 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + AEV+D + G F E +GD+ I+G E D G +S Sbjct: 84 RFLTKRLDLAEVVDPTVHYGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLHGKISWI 143 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL GD +++ PGG + IL+V + Sbjct: 144 SPVARALTKAREGDSVTLKTPGGLEELLILEVTY 177 >gi|225389819|ref|ZP_03759543.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme DSM 15981] gi|225044129|gb|EEG54375.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme DSM 15981] Length = 160 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ Y IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDTDKINIGCKVKLLDVEFDEEMEYFIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK +G+ + V G Y++L + Sbjct: 121 ISNESPVGHALLGKGVGETVDVETQAGTIQYKVLNIQ 157 >gi|238926931|ref|ZP_04658691.1| elongation factor GreA [Selenomonas flueggei ATCC 43531] gi|238885165|gb|EEQ48803.1| elongation factor GreA [Selenomonas flueggei ATCC 43531] Length = 156 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q Sbjct: 1 MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + ELEN I +++I G + G+ V++ + +++ + IVG EAD G Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKTVTMGSRVTVKDLEFDEEETFLIVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+G+++G I+VNAP G Y+I+ + Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155 >gi|323141548|ref|ZP_08076433.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT 12067] gi|322413960|gb|EFY04794.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT 12067] Length = 158 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K +T++G K+++EL R+ E R I++ + EARA GDLSEN+EY AKE Q N Sbjct: 1 MASKETILTAEGLRKLKEELAQRKGEIREEIVERLKEARAQGDLSENSEYDQAKEDQGKN 60 Query: 60 EGRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ ELE +I A +ID S + + ++ G+TV L + +GD++ Y IVG EAD Sbjct: 61 EGRILELEQMIKTATIIDDSASKAAGIVSLGSTVLLKDVETGDEETYTIVGTTEADPFEN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ A++G ++ D++ P GE +YEI+++ Sbjct: 121 RISNESPVGAAILGCKVHDVVVTKTPVGELSYEIVEIK 158 >gi|150009350|ref|YP_001304093.1| transcription elongation factor GreA [Parabacteroides distasonis ATCC 8503] gi|255016202|ref|ZP_05288328.1| transcription elongation factor GreA [Bacteroides sp. 2_1_7] gi|256842355|ref|ZP_05547858.1| transcription elongation factor GreB [Parabacteroides sp. D13] gi|262384735|ref|ZP_06077868.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B] gi|298377865|ref|ZP_06987815.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19] gi|301312256|ref|ZP_07218173.1| transcription elongation factor GreA [Bacteroides sp. 20_3] gi|149937774|gb|ABR44471.1| transcription elongation factor GreA [Parabacteroides distasonis ATCC 8503] gi|256735962|gb|EEU49293.1| transcription elongation factor GreB [Parabacteroides sp. D13] gi|262293716|gb|EEY81651.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B] gi|298265311|gb|EFI06974.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19] gi|300829678|gb|EFK60331.1| transcription elongation factor GreA [Bacteroides sp. 20_3] Length = 156 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+ Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I+ A +ID S + D + V + + Y +V D EA+++ G +S+S+P Sbjct: 65 LKGLISNARLIDESRVKTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKISVSTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD++ + P G T+EI+ + Sbjct: 125 IAQGLMGKKVGDVVEIRVPSGLMTFEIMDIS 155 >gi|319787549|ref|YP_004147024.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis 11-1] gi|317466061|gb|ADV27793.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis 11-1] Length = 166 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G D+++ EL + +RP ++KA++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITRAGHDRLKAELDDLWRVQRPEVVKALAAAAAEGDRSENAEYTYRKKQLAGIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V++ + + + FGA V L ++G+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLPALRVVETAPSDPEAVFFGAWVELERIDTGELARYRIVGPDETDAALGHISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + V PGG + ++ V + Sbjct: 135 ARALLRKRIDDEVEVQLPGGPARFVVVDVSY 165 >gi|187478047|ref|YP_786071.1| transcription elongation factor GreB [Bordetella avium 197N] gi|115422633|emb|CAJ49158.1| transcription elongation factor [Bordetella avium 197N] Length = 187 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 79/152 (51%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM Sbjct: 30 YMTPEGYARLRDELAHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AEV+D S F + SG+ + IVG EA+ +G +S SP Sbjct: 90 LTKRLDIAEVVDASLQPNRDQIFFGATVVYAGKSGEAQRVSIVGVDEAEPLAGKISWISP 149 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALI GD +++ PGG + +IL+V + Sbjct: 150 VARALIKAREGDTVTLRTPGGVEALDILEVHY 181 >gi|18034645|gb|AAL57611.1|AF456234_1 transcription cleavage factor GreA [Thermus aquaticus] Length = 156 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154 >gi|312864022|ref|ZP_07724258.1| transcription elongation factor GreA [Streptococcus vestibularis F0396] gi|322517498|ref|ZP_08070370.1| transcription elongation factor GreA [Streptococcus vestibularis ATCC 49124] gi|311100435|gb|EFQ58642.1| transcription elongation factor GreA [Streptococcus vestibularis F0396] gi|322123874|gb|EFX95437.1| transcription elongation factor GreA [Streptococcus vestibularis ATCC 49124] Length = 160 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD +++ +P G + EIL V Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157 >gi|29347975|ref|NP_811478.1| transcription elongation factor greA [Bacteroides thetaiotaomicron VPI-5482] gi|29339877|gb|AAO77672.1| transcription elongation factor greA [Bacteroides thetaiotaomicron VPI-5482] Length = 154 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 95/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GDI + P G+ E++ + Sbjct: 123 IAQGLLGKKVGDIAEITVPQGKIALEVVNIS 153 >gi|330965418|gb|EGH65678.1| transcription elongation factor GreB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 157 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K +++VG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRVVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEAGDEVLVNTPEGEKLWFVNSIVY 155 >gi|322514598|ref|ZP_08067631.1| transcription elongation factor GreB [Actinobacillus ureae ATCC 25976] gi|322119537|gb|EFX91624.1| transcription elongation factor GreB [Actinobacillus ureae ATCC 25976] Length = 162 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ + QEL++ ++ERP++ +A+SEA A D SENAEY K + Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALDDRSENAEYIYGKRRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + +++D ++ F A V L G+ K Y+IVG E D + Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFRAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+AR+LIGKE+ D I V+ P G+ I ++ + Sbjct: 120 SIDSPVARSLIGKEVDDEIKVDTPLGKSLLYINKIWY 156 >gi|257486310|ref|ZP_05640351.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486552|ref|ZP_07004612.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159029|gb|EFI00090.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330888219|gb|EGH20880.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori str. 301020] gi|330988435|gb|EGH86538.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010600|gb|EGH90656.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 157 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE GD + VN P GEK + + + + Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIDY 155 >gi|154505278|ref|ZP_02042016.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149] gi|153794476|gb|EDN76896.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149] Length = 161 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 82/155 (52%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G V + + ++ + IVG E + G +S Sbjct: 64 RIEELEGILKNAEVVVEDEVDLDKINVGCKVKVFDITFDEEMEFNIVGSTEVNSLEGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD + V G Y++L + Sbjct: 124 NESPVGQALMGKKVGDTVDVETQAGVIQYKVLDIS 158 >gi|281421867|ref|ZP_06252866.1| transcription elongation factor GreA [Prevotella copri DSM 18205] gi|281404109|gb|EFB34789.1| transcription elongation factor GreA [Prevotella copri DSM 18205] Length = 154 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 83/151 (54%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+D++ EL+ E P + AI+EAR GDLSEN EY AAK Q R++ Sbjct: 3 YMSQEGYDELVAELQHMVNVELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRISF 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++ A VID S + D + + + + + NY IV EAD+ SG +SI SP Sbjct: 63 KQKVLENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+AL+GK+ G+ + V P G + + V Sbjct: 123 IAKALLGKKAGEEVMVKVPAGLLKFRLDSVE 153 >gi|197301310|ref|ZP_03166395.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC 29176] gi|197299628|gb|EDY34143.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC 29176] Length = 160 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 85/155 (54%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S Sbjct: 64 RIEELEAILKNAEVVVEDEVDLDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLEGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++ D++ V G Y++L + Sbjct: 124 NESPVGQALMGKKVNDVVDVETQAGVIQYKVLDIQ 158 >gi|297616355|ref|YP_003701514.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] gi|297144192|gb|ADI00949.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] Length = 158 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K I +T +G K++ EL + R + I +A +GD++EN+EY+ AK Q Sbjct: 1 MSEKEIILTKEGLKKLEDELEHLKSVRRKEVASRIKQAIEFGDITENSEYEDAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A +I+ + D ++ G+ V L++ +G + + +V E+D + Sbjct: 61 EGRILCLEKTLRNARLIEDDDIHTDVVSLGSRVRLLDIATGKEITFTVVASAESDPKQSK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RA+IGK + + V P G KTY I+ + Sbjct: 121 ISDESPVGRAIIGKPINSEVEVAVPAGTKTYRIVSIE 157 >gi|283851364|ref|ZP_06368646.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B] gi|283573314|gb|EFC21292.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B] Length = 162 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP+T +GF ++++E R ++ERP II AI EAR GDL ENA Y+AA+E Q + E Sbjct: 1 MESIPITVEGFRRLERE-LERLKKERPAIILAIKEAREEGDLRENAGYEAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ + R VID+ST+ GD++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINFIESRMPRFNVIDLSTLGGDQVIFGATVEIEDVDTGDIKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ AL+GK GD I V+AP G+ YEI+ + + Sbjct: 120 ILSPVGLALLGKYEGDEIVVDAPRGKINYEIVSITF 155 >gi|294138934|ref|YP_003554912.1| transcription elongation factor GreB [Shewanella violacea DSS12] gi|293325403|dbj|BAJ00134.1| transcription elongation factor GreB [Shewanella violacea DSS12] Length = 161 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +G Sbjct: 1 MKALLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +++D S ++ FGA V L +G+ Y+IVG E D + G ++ Sbjct: 61 RVRYLVKRVEELKIVDYSPQQEGKVFFGAWVELEN-EAGEVVQYRIVGKDELDTKLGYIT 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP++RALIGK++ D I V P G K + + ++ + Sbjct: 120 IDSPMSRALIGKQVDDEIVVQTPSGAKEWYVNKIQY 155 >gi|228469383|ref|ZP_04054397.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3] gi|228309067|gb|EEK17697.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3] Length = 156 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 96/155 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E Sbjct: 1 MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A L+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S Sbjct: 61 KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++PIA+ L+GK++GD+ + P G +EIL++ Sbjct: 121 VNTPIAKGLLGKKVGDVAEIQVPAGTLVFEILEIT 155 >gi|157363383|ref|YP_001470150.1| transcription elongation factor GreA [Thermotoga lettingae TMO] gi|157313987|gb|ABV33086.1| transcription elongation factor GreA [Thermotoga lettingae TMO] Length = 163 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 4/158 (2%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K I +T +G+++++QEL +Q+ I + I EAR GDLSEN EY AK Q Sbjct: 1 MNKKNVIYLTKEGYEELKQELDSLKQKLMYEISERIKEARELGDLSENTEYDEAKNEQGR 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ ELE I+ +E+I+ + ++I+ G+ V + N+G++++ ++V QEAD+ S Sbjct: 61 IGSRITELEQILNNSEIIENT--DSNQISVGSYVIIKNLNTGEERSVRLVNPQEADIFSN 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+ SP+ RAL+G+++G+++ + AP G YEIL + Sbjct: 119 KISVDSPVGRALMGRKVGEVVKLKAPAGSVRYEILGIS 156 >gi|83720256|ref|YP_442130.1| transcription elongation factor GreB [Burkholderia thailandensis E264] gi|167619078|ref|ZP_02387709.1| transcription elongation factor GreB [Burkholderia thailandensis Bt4] gi|83654081|gb|ABC38144.1| transcription elongation factor GreB [Burkholderia thailandensis E264] Length = 187 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ +GD +++ P G + ++L V + Sbjct: 147 ISPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181 >gi|163792651|ref|ZP_02186628.1| Transcription elongation factor [alpha proteobacterium BAL199] gi|159182356|gb|EDP66865.1| Transcription elongation factor [alpha proteobacterium BAL199] Length = 185 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +GF ++ ELR ++ ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 29 KNYITPRGFQAMRDELRQLRRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + + D++ FGATV+ ++ ++ +IVG EAD++ G VS Sbjct: 89 RFLLKRLEIAEVVDPAQQKNHDQVFFGATVTYADEQDN-ERTVRIVGVDEADLERGEVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +PIARAL+ + GD++ + P G + E++++ + Sbjct: 148 IAPIARALLKAQEGDVVELRTPAGPQNIEVVRIAY 182 >gi|332308523|ref|YP_004436374.1| transcription elongation factor GreB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175852|gb|AEE25106.1| transcription elongation factor GreB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 158 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + Sbjct: 1 MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ ++++ S ++ FGA V + + G+ K ++IVG +E G + Sbjct: 61 RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIEN-DEGETKQFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALI KE+ D+ SV P G K + I + + Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYITSIEY 156 >gi|269797572|ref|YP_003311472.1| transcription elongation factor GreA [Veillonella parvula DSM 2008] gi|282850020|ref|ZP_06259402.1| transcription elongation factor GreA [Veillonella parvula ATCC 17745] gi|294793385|ref|ZP_06758530.1| transcription elongation factor GreA [Veillonella sp. 6_1_27] gi|294795204|ref|ZP_06760338.1| transcription elongation factor GreA [Veillonella sp. 3_1_44] gi|269094201|gb|ACZ24192.1| transcription elongation factor GreA [Veillonella parvula DSM 2008] gi|282580209|gb|EFB85610.1| transcription elongation factor GreA [Veillonella parvula ATCC 17745] gi|294453996|gb|EFG22371.1| transcription elongation factor GreA [Veillonella sp. 3_1_44] gi|294455816|gb|EFG24181.1| transcription elongation factor GreA [Veillonella sp. 6_1_27] Length = 157 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V + +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG Sbjct: 4 VKETLLTAEGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD + +S Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A++GK GD + V+ P G T+++L + Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157 >gi|218295530|ref|ZP_03496343.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23] gi|218244162|gb|EED10688.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23] Length = 156 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE+++ RA +++ S D++A G V L E SG++ + IVG EAD+ SG + Sbjct: 61 ARIAQLEDLLARAVIVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +AL+GK++GD++ + G + Y IL++ Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154 >gi|126653894|ref|ZP_01725741.1| transcription elongation factor GreA [Bacillus sp. B14905] gi|126589619|gb|EAZ83758.1| transcription elongation factor GreA [Bacillus sp. B14905] Length = 162 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 4/158 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR Sbjct: 5 KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSG 118 ++ L+++I A +I ++ G TV+ VE +G D+++Y IVG EAD Sbjct: 65 ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+G+ G+ ++V PGGE +I+ + Sbjct: 125 RISNESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 162 >gi|260655320|ref|ZP_05860808.1| transcription elongation factor GreA [Jonquetella anthropi E3_33 E1] gi|260629768|gb|EEX47962.1| transcription elongation factor GreA [Jonquetella anthropi E3_33 E1] Length = 152 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 96/149 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D + EL + EER RI K I EAR++GDLSENAEY AAK+ Q+ EG++ L Sbjct: 1 MTRQGYDALMAELIHLRSEERYRIAKRIEEARSFGDLSENAEYAAAKDEQSKLEGKIQSL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + RAEV+D S++ G IA G V+L+++ + Y IV +EA+ + G +S +SP+ Sbjct: 61 EYQLNRAEVVDSSSLDGSLIAVGTQVTLMDQTYRKQFVYSIVNSKEANPKEGRISSASPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RA++ + GD + V P G + ++L++ Sbjct: 121 GRAILNRHKGDEVIVKTPKGIRKLKVLKI 149 >gi|260770789|ref|ZP_05879718.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972] gi|260614026|gb|EEX39216.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972] gi|315178831|gb|ADT85745.1| transcription elongation factor GreB [Vibrio furnissii NCTC 11218] Length = 161 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 3/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K+++E + E RP + K ++ A + GD SENA+Y K L + Sbjct: 1 MKTKLITREGYEKLKKEHDYLWHERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E D Sbjct: 61 RVRFLRKLLPELKIVDYSPQQEGKVFFGAWVEIENS-AGDVKRFRIVGPEEIYGDDVKEY 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI SP+ARAL+ KE+ D V P GEK + I ++ + Sbjct: 120 ISIDSPMARALLKKEVDDEFVVRTPSGEKEWFINRIEY 157 >gi|309792630|ref|ZP_07687091.1| transcription elongation factor GreA [Oscillochloris trichoides DG6] gi|308225352|gb|EFO79119.1| transcription elongation factor GreA [Oscillochloris trichoides DG6] Length = 157 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G K++ EL ER + + I+ A+ GD+SE+ EY+ AK+ Q L Sbjct: 1 MTDKPTYLTRDGRAKLEAELEELTTVERKHVAERIAAAKELGDISESGEYEDAKKSQALL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ EL++I++RAE+ID S + G++V++ + +++ + IVG EA+ + G Sbjct: 61 EGRIRELKHILSRAELIDEDAHSTGEVRVGSSVTVRLEEDNEEETWTIVGSAEANPRQGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK ++V P G IL+V Sbjct: 121 ISNESPIGAALLGKRARSKVTVQTPSGVMKLTILKVK 157 >gi|78045034|ref|YP_361163.1| transcription elongation factor GreA [Carboxydothermus hydrogenoformans Z-2901] gi|77997149|gb|ABB16048.1| transcription elongation factor GreA [Carboxydothermus hydrogenoformans Z-2901] Length = 157 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T +G K++QEL + +R + + I +A +GD+SEN+EY+ AK Q Sbjct: 1 MKEKEVILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEYEDAKNAQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++I+ D + G+ V L + G + Y +VG EAD + Sbjct: 61 EGRIITLEKMLRNAKIIENDQQ-KDVVTLGSKVVLKDLEYGVVEEYYLVGSAEADPSANK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ A++GK+ G ++ V P G YEI+ +L Sbjct: 120 ISNESPVGSAILGKKKGTVVEVKVPAGTLKYEIVDIL 156 >gi|188990994|ref|YP_001903004.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. B100] gi|167732754|emb|CAP50948.1| greB [Xanthomonas campestris pv. campestris] Length = 168 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA + L + +SG+ Y+IVG E D SG +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDPQAVFFGAQIELEDADSGELLRYRIVGPDETDAGSGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165 >gi|150021255|ref|YP_001306609.1| transcription elongation factor GreA [Thermosipho melanesiensis BI429] gi|166201184|sp|A6LMS3|GREA_THEM4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149793776|gb|ABR31224.1| transcription elongation factor GreA [Thermosipho melanesiensis BI429] Length = 156 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R Sbjct: 4 EVIYLTKEGYEKLKTELDNLKQKLMFEIAERIKEARELGDLSENSEYQEAKNEQGRIAAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELEN++++AEVI+ + + I G V + +G++K QIV EADV + +S Sbjct: 64 INELENMLSKAEVIEG--LDTNVINIGNWVIIKNLETGEEKTIQIVTPHEADVFNNKISF 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI R L+GK++G+++ + AP G Y+IL + Sbjct: 122 ESPIGRILVGKKVGEVVKIKAPKGVFKYQILGIK 155 >gi|262376606|ref|ZP_06069834.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] gi|262308316|gb|EEY89451.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145] Length = 164 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K++ + Sbjct: 1 MKSNLITRAGHDKLVAELKNLWHEERPEITKKVNWAASLGDRSENADYQYNKQILRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120 R+ L + ++ID S ++ FGA V + + G++K +IVG D+ D + Sbjct: 61 RVRYLGKRLEELKIIDFSPEQEGKVYFGAWVEIENEE-GEQKTLRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SISSP+ARAL+GK++ D V P G+K + I + + Sbjct: 120 SISSPMARALLGKQVDDEAEVLTPSGKKLWFINSIRY 156 >gi|237797206|ref|ZP_04585667.1| transcription elongation factor GreB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020056|gb|EGI00113.1| transcription elongation factor GreB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 157 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITRKVTWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + + GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVLYSPEQEGRVFFGAWVEIENEE-GDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155 >gi|331002785|ref|ZP_08326299.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413274|gb|EGG92642.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon 107 str. F0167] Length = 160 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G +++EL+ + +R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAEKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LEN++ AEV+ + D I G V +++K+ D+ +++IVG EAD +G Sbjct: 61 EARIEQLENLLKNAEVVVEDEVDLDTIGIGCMVKILDKDFDDELDFKIVGSTEADSLAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK +G+ V G Y +L++ Sbjct: 121 ISNESPLGKALLGKRIGETAVVETQAGVSEYMVLEIQ 157 >gi|37680902|ref|NP_935511.1| transcription elongation factor GreA [Vibrio vulnificus YJ016] gi|37199652|dbj|BAC95482.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 165 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 9 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 67 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 68 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD ++++ PGG K +EI V + Sbjct: 128 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 164 >gi|15672618|ref|NP_266792.1| transcription elongation factor [Lactococcus lactis subsp. lactis Il1403] gi|281491116|ref|YP_003353096.1| transcription elongation factor GreA [Lactococcus lactis subsp. lactis KF147] gi|13878507|sp|Q9CHT2|GREA_LACLA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|12723539|gb|AAK04734.1|AE006296_8 transcription elongation factor GreA [Lactococcus lactis subsp. lactis Il1403] gi|281374866|gb|ADA64385.1| Transcription elongation factor GreA [Lactococcus lactis subsp. lactis KF147] gi|326406137|gb|ADZ63208.1| transcription elongation factor GreA [Lactococcus lactis subsp. lactis CV56] Length = 156 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 105/155 (67%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E Sbjct: 1 MEKTFPMTQEGLDKLKLELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD SG + Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIAR LIGK++GDI++V P GE T +I++V Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155 >gi|238922488|ref|YP_002936001.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|238874160|gb|ACR73867.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] Length = 185 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 92/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 27 KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 86 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S Sbjct: 87 IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD ++V GE TY++L++ Sbjct: 147 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 180 >gi|147669340|ref|YP_001214158.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1] gi|146270288|gb|ABQ17280.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1] Length = 266 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDELCILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPI +AL + GD I + P G Y I + + Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265 >gi|160944698|ref|ZP_02091925.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii M21/2] gi|158443882|gb|EDP20886.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii M21/2] gi|295104346|emb|CBL01890.1| transcription elongation factor GreA [Faecalibacterium prausnitzii SL3/3] Length = 161 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE I A +ID S +S D ++ G V++ E + + Y IVG EAD +G + Sbjct: 61 NRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 S SP+ AL+GK +GD V P G Y +L + Sbjct: 121 SDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAITH 158 >gi|21231994|ref|NP_637911.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767879|ref|YP_242641.1| transcription elongation factor GreB [Xanthomonas campestris pv. campestris str. 8004] gi|25452985|sp|Q8P7P8|GREB_XANCP RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|21113729|gb|AAM41835.1| transcription elongation factor and transcript cleavage [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573211|gb|AAY48621.1| transcription elongation factor and transcript cleavage [Xanthomonas campestris pv. campestris str. 8004] Length = 168 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D + + FGA V L + +SG+ Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D P G+ T+ ++ V + Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165 >gi|225181739|ref|ZP_03735178.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT 1] gi|225167610|gb|EEG76422.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT 1] Length = 156 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV K + +T G +K+++EL + + +R + I A ++GD+SEN+EY+ AK Q Sbjct: 1 MVSKEVILTQGGLEKLEKELDYLKSTKRREVADRIKTAISFGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ ++I+ T + ++ G+TV L + + Y IVG EA+ Sbjct: 61 EGRIITLEKMLRNVKLINEET-DSETVSVGSTVILKDLEFDEDFEYTIVGSAEANPAENK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+L D++ V+ P G Y+I+++ Sbjct: 120 ISNESPVGKAILGKKLNDVVEVSVPAGILKYQIVKIS 156 >gi|260771823|ref|ZP_05880741.1| transcription elongation factor GreA [Vibrio metschnikovii CIP 69.14] gi|260613115|gb|EEX38316.1| transcription elongation factor GreA [Vibrio metschnikovii CIP 69.14] Length = 157 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 118/158 (74%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EKLLRDELERLLKLRPKITQAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ + + ++ FG+TVSL++ ++ ++K YQIVGD EA++++G + Sbjct: 60 QIRDIEYKLSVAQVIDIAKIENTGKVIFGSTVSLIDVDTDEEKRYQIVGDDEAEIKAGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD ++++ PGG+K +EI +V ++ Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGDKVFEIDKVDYL 157 >gi|325299317|ref|YP_004259234.1| transcription elongation factor GreA [Bacteroides salanitronis DSM 18170] gi|324318870|gb|ADY36761.1| transcription elongation factor GreA [Bacteroides salanitronis DSM 18170] Length = 151 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 97/151 (64%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+ K+ EL+ + ERP+++ AI+EAR GDLSENAEY AAKE Q + E ++ +L Sbjct: 1 MSEEGYQKLVAELKHLEAVERPKVVAAIAEARDKGDLSENAEYDAAKEAQAMLEMKINQL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI Sbjct: 61 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSETEANLKQGKISVNTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+ L+GK++GD+ + P G+ + E+ + + Sbjct: 121 AQGLLGKKVGDVAEITIPQGKISLEVTGISF 151 >gi|289432606|ref|YP_003462479.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT] gi|288946326|gb|ADC74023.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT] Length = 266 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPI +AL + GD I + P G Y I + + Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265 >gi|213622659|ref|ZP_03375442.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213855714|ref|ZP_03383954.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 128 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 58/128 (45%), Positives = 93/128 (72%), Gaps = 1/128 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+ Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SISSPIAR 128 S++SPIAR Sbjct: 121 SVNSPIAR 128 >gi|284035974|ref|YP_003385904.1| transcription elongation factor GreA [Spirosoma linguale DSM 74] gi|283815267|gb|ADB37105.1| transcription elongation factor GreA [Spirosoma linguale DSM 74] Length = 157 Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 98/155 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T +G ++++ EL + + R I + I+EAR GDLSENAEY AAK+ Q L+E Sbjct: 1 MAKISYYTEEGLNRLKAELVELKTKGRAAIARQIAEARDKGDLSENAEYDAAKDAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++++LE +++ A V+D ST+ +++ + V + K SG + Y +V ++EAD+++G + Sbjct: 61 LKISKLEEVLSNARVLDESTIDASQVSVLSKVKIKNKKSGAEMLYILVSEEEADLKTGRI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+ SPI + L+GK +GD + P G +E++++ Sbjct: 121 SVGSPIGKGLLGKRVGDTAEIKVPAGVLEFEVMEI 155 >gi|313886047|ref|ZP_07819785.1| transcription elongation factor GreA [Porphyromonas asaccharolytica PR426713P-I] gi|332299382|ref|YP_004441303.1| transcription elongation factor GreA [Porphyromonas asaccharolytica DSM 20707] gi|312924577|gb|EFR35348.1| transcription elongation factor GreA [Porphyromonas asaccharolytica PR426713P-I] gi|332176445|gb|AEE12135.1| transcription elongation factor GreA [Porphyromonas asaccharolytica DSM 20707] Length = 156 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 96/155 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E Sbjct: 1 MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A L+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S Sbjct: 61 KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++PIA+ L+GK++GDI + P G +EIL++ Sbjct: 121 VNTPIAKGLLGKKVGDIAEIQVPAGTLVFEILEIT 155 >gi|311747108|ref|ZP_07720893.1| transcription elongation factor GreB [Algoriphagus sp. PR1] gi|126578813|gb|EAZ82977.1| transcription elongation factor GreB [Algoriphagus sp. PR1] Length = 171 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%) Query: 1 MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 M KIP +TS+G K+++E + ERP + ++ A + GD SENA+ Sbjct: 1 MRRKIPESTLPKLNRSQLITSEGLQKLKEEHDHLWRVERPDVTAKVAWAASLGDRSENAD 60 Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 Y K+ + R+ L I +VI+ ++ FGA V + + G K ++IV Sbjct: 61 YHYNKKRLREIDNRLRYLRKCIDDFKVIEYHPNQEGKVNFGAWVEIKNEKKGLKNRFRIV 120 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +E +S+ SP+A++L+GK +GD + V+ G+ ++IL++ + Sbjct: 121 GYEELIGNKNYISMDSPMAKSLLGKAVGDEVIVSTKLGDFVWKILKIEY 169 >gi|294668892|ref|ZP_06733982.1| transcription elongation factor GreB [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309189|gb|EFE50432.1| transcription elongation factor GreB [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 162 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 2/154 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 7 YITPAGWRSLKDELYRLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRF 66 Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+V+D T D+I FGATV+L+ + +G ++ +IVG E D +S S Sbjct: 67 LTKRLEAAQVVDPETREATDQIFFGATVTLL-RGNGSEQTVKIVGIDEIDTAQNKISWIS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P+AR LI GD +S+N P G + EIL+V ++ Sbjct: 126 PLARCLIKAREGDEVSLNTPEGREDIEILEVAYV 159 >gi|238019652|ref|ZP_04600078.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748] gi|237863693|gb|EEP64983.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748] Length = 157 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V + +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG Sbjct: 4 VKETLLTAEGLKKLEEELMYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD + +S Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A++GK GD + V+ P G T+++L + Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157 >gi|330951745|gb|EGH52005.1| transcription elongation factor GreB [Pseudomonas syringae Cit 7] Length = 157 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRDGHEALKKELDYLGREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+GD + VN P GEK + + + + Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155 >gi|109896438|ref|YP_659693.1| transcription elongation factor GreB [Pseudoalteromonas atlantica T6c] gi|109698719|gb|ABG38639.1| transcription elongation factor GreB [Pseudoalteromonas atlantica T6c] Length = 158 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + Sbjct: 1 MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L ++ ++++ S ++ FGA V + + G+ K ++IVG +E G + Sbjct: 61 RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIEN-DEGETKQFRIVGPEEIYGDAKGYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARALI KE+ D+ SV P G K + + + + Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYVTSIEY 156 >gi|91787228|ref|YP_548180.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] gi|91696453|gb|ABE43282.1| GreA/GreB family elongation factor [Polaromonas sp. JS666] Length = 190 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+++++ EL ERP++++ + A + GD SEN +Y K+ + R+ Sbjct: 26 KNYITPVGYERLRAELLDLIDNERPKVVEIVHWAASNGDRSENGDYHYGKKRLREIDRRI 85 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE+ + S G D++ FGATV+ V+ + G+++ I+G EA+ G +S Sbjct: 86 RFLTQRLEIAEISNPSIHHGSDQVFFGATVTYVD-DRGEERTVTILGIDEANSALGQISW 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP ARAL+ +GD +++ P G + E+L+V + Sbjct: 145 ISPAARALLKSRVGDEVNLVTPQGLQVLEVLKVDY 179 >gi|258510226|ref|YP_003183660.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476952|gb|ACV57271.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 158 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+ Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK++G I+ VN P G ++IL++ Sbjct: 121 ISNESPVGKALLGKQIGSIVEVNVPAGVIKFKILEIK 157 >gi|167629420|ref|YP_001679919.1| transcription elongation factor grea [Heliobacterium modesticaldum Ice1] gi|167592160|gb|ABZ83908.1| transcription elongation factor grea [Heliobacterium modesticaldum Ice1] Length = 160 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T++G K+++EL + + +R ++ + I +A YGD+SEN+EY+ AK Q Sbjct: 1 MEEKQVMLTAEGLKKLEEELEFLKSHKRGQVAERIKQAIDYGDISENSEYEDAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A++I+ + + GA V L + + Y IVG EAD Sbjct: 61 EGRIITLEKMLRNAKLIEGGEGETNVVTIGARVLLKDLEDDSEFEYTIVGSAEADPSQSK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +AL+G+ G ++ V P G+ YEI+ + Sbjct: 121 ISNVSPVGKALLGQPKGAVVEVQVPMGKIKYEIVDI 156 >gi|302385514|ref|YP_003821336.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] gi|302196142|gb|ADL03713.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] Length = 160 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MVDK +T +G K + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MVDKKNILTYEGLKKYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ ALIG+++GD++ V G Y++L++ Sbjct: 121 ISNESPVGHALIGRKVGDVVDVETQSGVIQYKVLEIQ 157 >gi|299147539|ref|ZP_07040603.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23] gi|298514326|gb|EFI38211.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23] Length = 154 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 95/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKATIADAKIIDESKLKTDSVQILSKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD+ + P G+ E++ + Sbjct: 123 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 153 >gi|229525286|ref|ZP_04414691.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis VL426] gi|229338867|gb|EEO03884.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis VL426] Length = 150 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 72/151 (47%), Positives = 111/151 (73%), Gaps = 2/151 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 ++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150 +S++SPIAR LIGK GD +S+ PGG K Y Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVY 150 >gi|332528408|ref|ZP_08404400.1| transcription elongation factor [Hylemonella gracilis ATCC 19624] gi|332042087|gb|EGI78421.1| transcription elongation factor [Hylemonella gracilis ATCC 19624] Length = 185 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL EERP++++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPAGYARLRAELMQLIDEERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV D S G D++ FGATV+ + +G ++ I+G EAD G VS Sbjct: 87 RFLTKRLEIAEVADPSVHHGSDQVFFGATVTYAD-GAGVERTITILGIDEADNLRGQVSW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR L+ +GD++ + P G + E+L+V + Sbjct: 146 ISPVARTLLKARVGDVLKLVTPAGVEEIEVLEVSY 180 >gi|255536258|ref|YP_003096629.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium 3519-10] gi|255342454|gb|ACU08567.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium 3519-10] Length = 170 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G DK++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E ++++ Sbjct: 18 YVTKEGLDKMKAELEQLETIERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMKISK 77 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +++I+ A+VID + + +++ TV L ++ ++ + +V D E+D++SG +S+++P Sbjct: 78 IKDIVINAKVIDETQLDTSKVSILTTVRLKNNDTKAEQKFTLVPDNESDLKSGRISVNTP 137 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156 IA+ L+GK +G+ + P G K ++E+L++ Sbjct: 138 IAKGLLGKTVGEKADIVLPNGNKLSFEVLEIS 169 >gi|262278089|ref|ZP_06055874.1| transcription elongation factor and transcript cleavage [Acinetobacter calcoaceticus RUH2202] gi|262258440|gb|EEY77173.1| transcription elongation factor and transcript cleavage [Acinetobacter calcoaceticus RUH2202] Length = 164 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + ++ID S ++ FGA V + + G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIIDYSPEQAGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GKE+ D I V+ P G+K + I + + Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156 >gi|88861075|ref|ZP_01135710.1| transcription elongation factor GreB [Pseudoalteromonas tunicata D2] gi|88817003|gb|EAR26823.1| transcription elongation factor GreB [Pseudoalteromonas tunicata D2] Length = 160 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T +G++K++QE + +E+RP + K ++ A + GD SENA+Y K L + Sbjct: 1 MKTMLITFEGYNKLKQEHDYLWKEQRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120 R+ L I+ +++ S ++ FGA V + + GD KN +IVG +E + Sbjct: 61 RVRYLRKIMPDLKIVYYSPEQEGKVFFGAWVEIEN-DDGDIKNLRIVGPEEIYGDSKNYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+ SP+ARALI KE+ D + V P GEKT+ I ++ ++ Sbjct: 120 SVDSPMARALIKKEVDDEVIVKTPEGEKTWYINKITYV 157 >gi|239626631|ref|ZP_04669662.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516777|gb|EEQ56643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 160 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RALIGK +GD + V G+ Y++L++ Sbjct: 121 ISNESPVGRALIGKVVGDCVEVETQAGDIQYKVLEIQ 157 >gi|227550518|ref|ZP_03980567.1| elongation factor GreA [Enterococcus faecium TX1330] gi|227180419|gb|EEI61391.1| elongation factor GreA [Enterococcus faecium TX1330] Length = 198 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 40 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 99 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 100 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 159 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 160 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 196 >gi|257869644|ref|ZP_05649297.1| prokaryotic transcription elongation factor GreA [Enterococcus gallinarum EG2] gi|257803808|gb|EEV32630.1| prokaryotic transcription elongation factor GreA [Enterococcus gallinarum EG2] Length = 159 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 107/157 (68%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDNDEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIARALIGK++ D ++++ PGG+ +I +V Sbjct: 121 ISNDSPIARALIGKKINDEVTISTPGGDMLVKITEVK 157 >gi|182420076|ref|ZP_02951310.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237669518|ref|ZP_04529498.1| transcription elongation factor GreA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376113|gb|EDT73700.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237654962|gb|EEP52522.1| transcription elongation factor GreA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 161 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 88/154 (57%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR Sbjct: 6 KQYVMTYEGVKKLENELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LEN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S Sbjct: 66 IVTLENMLKNAVVVDESEIPKDVVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++G+I+ V P G +EIL + Sbjct: 126 ESPVGSALIGKKIGEIVEVQIPDGVNKFEILGIS 159 >gi|110638033|ref|YP_678241.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC 33406] gi|110280714|gb|ABG58900.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC 33406] Length = 158 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K+ T +G +K++ EL + + R +I I+EAR GDLSENAEY AAK+ Q L Sbjct: 1 MSSKVSYYTEEGLNKLKNELSHLKTKGRSQIAAQIAEARDKGDLSENAEYDAAKDAQGLL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E ++++LE I++ A ++D ST+ + + V + K +G Y +V ++EAD+++G Sbjct: 61 ELKISKLEEIVSNARLLDESTIDTSKASILTKVKIKNKKTGHIVEYTLVSEEEADLKAGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S+ SPI +AL+G+E+G+ + V+ P G+ +EIL + Sbjct: 121 ISLKSPIGKALLGREVGETVLVDVPAGKIEFEILDI 156 >gi|150026396|ref|YP_001297222.1| transcription elongation factor GreA [Flavobacterium psychrophilum JIP02/86] gi|166200662|sp|A6H247|GREA_FLAPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|149772937|emb|CAL44421.1| Transcription elongation factor GreA [Flavobacterium psychrophilum JIP02/86] Length = 158 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M T++G K++ EL + ERP+ I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MSTVSYYTAEGLKKLKDELEQLKAIERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E + + A +ID S + + + V + +++G + +Y +V + EAD+++G + Sbjct: 61 LKIKKMEEVYSNARLIDESQLDVSKALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +G+I + P G +E+L++ Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGILKFEVLEIT 156 >gi|320324941|gb|EFW81013.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. B076] Length = 157 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE GD + VN P GEK + + +++ Sbjct: 119 SIDSPMARALLKKEEGDEVLVNMPEGEKLWFVNSIVY 155 >gi|270308083|ref|YP_003330141.1| transcription elongation factor [Dehalococcoides sp. VS] gi|270153975|gb|ACZ61813.1| transcription elongation factor [Dehalococcoides sp. VS] Length = 265 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG Sbjct: 111 VEKIPMTASGYKKLEDELSTLKG-KRIEVIEEMRLAAMDKDMRENAPYHAAKEQRGQIEG 169 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G+ Y +V +E + G +S Sbjct: 170 RIKEIEHELKYAEVSEYTDNNTSKVNMGNTVKLRDLKNGECCTYTLVSPKEIEPLKGKIS 229 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPI +A+ + G+ I + P G Y I + + Sbjct: 230 ASSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 265 >gi|255318589|ref|ZP_05359822.1| transcription elongation factor GreB [Acinetobacter radioresistens SK82] gi|262378815|ref|ZP_06071972.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] gi|255304581|gb|EET83765.1| transcription elongation factor GreB [Acinetobacter radioresistens SK82] gi|262300100|gb|EEY88012.1| transcription elongation factor GreB [Acinetobacter radioresistens SH164] Length = 159 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G D++ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRAGHDRLVAELQQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120 R+ L + ++D S R+ FGA V + G++K +IVG D+ D + Sbjct: 61 RVRYLGKRLEELRIVDHSPEQDGRVYFGAWVDIEN-EYGEQKTLRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D I V P G+K + I + + Sbjct: 120 SIDSPMARALLSKQVNDEIEVMTPSGKKQWYINAIRY 156 >gi|224537713|ref|ZP_03678252.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus DSM 14838] gi|224520636|gb|EEF89741.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus DSM 14838] Length = 154 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 95/152 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ + Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ II A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKTIIADAKIIDESKLKTDSVQILNKVELKNIKNGMKMIYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G E++ + + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMVNLEVVNISF 154 >gi|291613395|ref|YP_003523552.1| transcription elongation factor GreB [Sideroxydans lithotrophicus ES-1] gi|291583507|gb|ADE11165.1| transcription elongation factor GreB [Sideroxydans lithotrophicus ES-1] Length = 186 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ ++++E ERP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 28 KNYITPEGYRRLKEEYMQLLDVERPALVQTVSWAASNGDRSENGDYIYGKKRLREIDRRL 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + ++VID + G +++ FGATV++ + G ++ Y IVG EA+ G +S Sbjct: 88 RFLAKRLENSQVIDPAQRQGCEQVFFGATVTVCHSD-GTERTYSIVGIDEANASKGHISW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR L+ D + + P G + +++V + Sbjct: 147 VSPLARTLLKARADDAVILQLPEGVEELVVIEVSY 181 >gi|89892964|ref|YP_516451.1| hypothetical protein DSY0218 [Desulfitobacterium hafniense Y51] gi|219666231|ref|YP_002456666.1| transcription elongation factor GreA [Desulfitobacterium hafniense DCB-2] gi|89332412|dbj|BAE82007.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536491|gb|ACL18230.1| transcription elongation factor GreA [Desulfitobacterium hafniense DCB-2] Length = 156 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T +G +++ EL + +R + + I +A +GD+SEN+EY AK Q Sbjct: 1 MAEKEVILTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDISENSEYDDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A VID S + +A G TV L +K G+++ Y IVG EAD S Sbjct: 61 EGRIITLEKMLRNARVIDDLEGS-EVVALGTTVILKDKEFGEEEEYTIVGSAEADPGSNK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++G+ G ++ +N P G YEI+ + Sbjct: 120 ISNESPVGKAVLGQPKGTVVEINVPAGILYYEIVDIR 156 >gi|291563891|emb|CBL42707.1| transcription elongation factor GreA [butyrate-producing bacterium SS3/4] Length = 160 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G K + EL+ + R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKKYEDELQDLKVNRRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ ++ D+I G V + + + ++ +++VG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEVNLDKINVGCIVKVYDVDFDEEMEFKLVGSTEANSLENK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ ALIGK +GD++ V G Y++L + Sbjct: 121 ISNESPVGHALIGKRVGDVVDVETQSGVIQYKVLDIK 157 >gi|302388756|ref|YP_003824577.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] gi|302199384|gb|ADL06954.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] Length = 158 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 90/154 (58%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T +G K+++EL + + +R + I +A ++GDLSEN+EY AK Q EG+ Sbjct: 4 KEVVLTQEGLRKLEKELEYLKSVKRKEVADRIKQAISFGDLSENSEYDEAKNEQAFVEGK 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A LE + A+VID + +S + + G+ V + + ++ + Y IV EA+ +S Sbjct: 64 IAMLEEKLRNAKVIDDADISTETVTLGSKVLIRDLDTEEAIEYTIVSSAEANPIDFKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G + GD+I ++ P G+ Y + ++ Sbjct: 124 ESPVGKALMGAKKGDVIEISVPAGQVRYRVEEIK 157 >gi|325261221|ref|ZP_08127959.1| transcription elongation factor GreA [Clostridium sp. D5] gi|324032675|gb|EGB93952.1| transcription elongation factor GreA [Clostridium sp. D5] Length = 161 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 88/155 (56%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKRLLTYAGLKSLEDELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+I+ AEV+ + D+I G V + + ++ +++IVG EA+ G +S Sbjct: 64 RIEELESILKNAEVVVEDEVDFDKINVGCKVKVFDITYDEEMDFKIVGSTEANSLEGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G++ GD++ V G+ Y++L++ Sbjct: 124 NESPVGQALMGRKTGDLVEVETQAGQIQYKVLEIS 158 >gi|285017768|ref|YP_003375479.1| transcription elongation factor greb (transcript cleavage factor greb) protein [Xanthomonas albilineans GPE PC73] gi|283472986|emb|CBA15491.1| probable transcription elongation factor greb (transcript cleavage factor greb) protein [Xanthomonas albilineans] Length = 168 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 83/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L Sbjct: 15 ITPEGHARLKAELDDLWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ + + FGA ++L + +SG+ + Y+IVG E D G +SI SP+ Sbjct: 75 SKRLEALRVVADAPSDPQAVFFGARIALEDVDSGELRRYRIVGPDETDAARGWISIDSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + D + PGG ++ ++ V + Sbjct: 135 ARALLKKRIDDEVEAQLPGGRHSFVVVAVEY 165 >gi|308068951|ref|YP_003870556.1| transcription elongation factor greA (transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|305858230|gb|ADM70018.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Paenibacillus polymyxa E681] Length = 159 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 94/154 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G K++ EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R Sbjct: 4 EEVLLTKEGLAKLEDELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE ++T+A V+D S + ++ G+TV L + +K Y+IV EADV +S Sbjct: 64 ILILEKMLTKARVVDESNLDLRTVSIGSTVILNDIEFSEKMEYKIVSPAEADVLDNKISY 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GKE+G II V+AP YE+L++ Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157 >gi|291526253|emb|CBK91840.1| transcription elongation factor GreA [Eubacterium rectale DSM 17629] gi|291526764|emb|CBK92350.1| transcription elongation factor GreA [Eubacterium rectale M104/1] Length = 162 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 92/154 (59%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK++GD ++V GE TY++L++ Sbjct: 124 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 157 >gi|325982789|ref|YP_004295191.1| transcription elongation factor GreB [Nitrosomonas sp. AL212] gi|325532308|gb|ADZ27029.1| transcription elongation factor GreB [Nitrosomonas sp. AL212] Length = 182 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ E + +RP ++K I+ A + GD SEN +Y K+ + R+ Sbjct: 26 KNYITPDGYQRLRDEFDQLWKVDRPELVKTITWAASNGDRSENGDYIYGKKRLREIDRRL 85 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE++D S ++ FGATV++ + +K+ Y IVG EA+ G +S Sbjct: 86 RFLSRRLDSAEIVDPSQRGECHQVFFGATVTVCNAQN-EKQTYSIVGMDEAEPGCGRISW 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+AL+ GD+++++ PGG + E+++V + Sbjct: 145 ISPLAKALLKAHEGDVVTLHTPGGVEELEVIEVHY 179 >gi|27365048|ref|NP_760576.1| transcription elongation factor GreA [Vibrio vulnificus CMCP6] gi|320155431|ref|YP_004187810.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O] gi|31076695|sp|Q8DBW9|GREA_VIBVU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27361194|gb|AAO10103.1| Transcription elongation factor GreA [Vibrio vulnificus CMCP6] gi|319930743|gb|ADV85607.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O] Length = 157 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S++SPIAR LIGK GD ++++ PGG K +EI V + Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 156 >gi|116623798|ref|YP_825954.1| transcription elongation factor GreB [Candidatus Solibacter usitatus Ellin6076] gi|116226960|gb|ABJ85669.1| transcription elongation factor GreB [Candidatus Solibacter usitatus Ellin6076] Length = 227 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++++E R+ ERP + K ++ A + GD SENA+YQ K +GR+ Sbjct: 44 KNYITPDGLQRLKEEHRFLLTRERPAVTKVVAWAASNGDRSENADYQYGKRRLRQIDGRI 103 Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 L I AEV+D + + R FGATV +G ++ IVG E D+ Sbjct: 104 RFLTKRIDAAEVVDPERPRAGQAATRAFFGATVHYANA-AGTERVVSIVGTDEVDLNRNH 162 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ RAL+ GD + + APGG + +L+V + Sbjct: 163 ISWVSPLGRALMKSAAGDRVVLQAPGGTEHLVVLKVCY 200 >gi|315652680|ref|ZP_07905655.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] gi|315485058|gb|EFU75465.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] Length = 160 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G +++EL+ + +R I I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAGKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ AEV+ + D I G V +++K+ ++ +++IVG EAD +G Sbjct: 61 EARIEQLEALLKNAEVVVEDEVDLDTIGIGCKVKILDKDFDEELDFKIVGSTEADSLAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+GK++G+ V G Y +L++ Sbjct: 121 ISNESPLGKALLGKKIGETAEVETQAGVSEYMVLEIQ 157 >gi|189502128|ref|YP_001957845.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus 5a2] gi|238692311|sp|B3ESB4|GREA_AMOA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189497569|gb|ACE06116.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus 5a2] Length = 157 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++K+ T +G +++ EL + E R ++ + +SEAR GDLSENAEY AAKE Q + E Sbjct: 1 MEKVSYYTEEGLQRLKGELTQLKSEGRAKVAEQLSEARDKGDLSENAEYDAAKEAQEILE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE ++ A VI+ ++ ++ + V + K G Y +V ++EAD++ G + Sbjct: 61 RRIAKLEELMINARVINKDNINTSAVSILSKVKIKNKKLGKVSTYTMVSEEEADLKEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SPI + L+GK+ G++ V AP G+ +EIL + + Sbjct: 121 SIESPIGKGLLGKKAGEVAIVEAPAGKIEFEILDISF 157 >gi|56459393|ref|YP_154674.1| GreB [Idiomarina loihiensis L2TR] gi|56178403|gb|AAV81125.1| GreB [Idiomarina loihiensis L2TR] Length = 159 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G++K+QQEL + ER ++ +S A + GD SENA+Y+ K+ +G Sbjct: 1 MKTNLITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRKIDG 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + +V+ S ++ FGA V + ++ + +QIVG E + VS Sbjct: 61 RIRYLTKRLEQVKVVYYSPQQDGKVFFGAWVEIEDEEEN-VRAFQIVGPDEIYDRKDAVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K++ D V G +T+ I ++ + Sbjct: 120 IDSPMARALLKKQVDDEAEVTTQQGTRTWFINKISY 155 >gi|289449476|ref|YP_003475259.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184023|gb|ADC90448.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 97/154 (62%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V++I +T +GF+ +++EL R+ R + + I A ++GDLSEN+EY AK+ Q NEG Sbjct: 4 VEQIEMTLEGFNHLKEELEHRKIVVRSEVAERIKVALSFGDLSENSEYDDAKQAQAENEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I+ + VID +S + G+ L ++ +G++ Y IVG +E ++ +S Sbjct: 64 RIMEIEAILKKVRVIDNDEISKTNVTLGSAFVLRDEATGEETQYTIVGAKEENIFENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + ++GK+ G +ISV AP G+ Y+I+++ Sbjct: 124 SDSPVGQQVLGKKKGSVISVKAPIGQLKYKIVKI 157 >gi|229829708|ref|ZP_04455777.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM 14600] gi|229791697|gb|EEP27811.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM 14600] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K++ EL + +R + I+EAR GDLSENAEY+AAKE Q E Sbjct: 4 AKKNLMTYEGLQKLEAELEDLKTNKRKANSRDIAEAREQGDLSENAEYEAAKEEQRQIEN 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+ I+ AE+ D + + G+TV+L++ ++ Y+IVG E + G +S Sbjct: 64 RINEITKILKNAEIAD-DIVDKSIVNIGSTVTLLDLEYDEELTYKIVGSTEVNSLGGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ A++ + G+ ++V G Y+IL + Sbjct: 123 NESPVGAAILHHKAGETVTVETEAGSFKYKILSISH 158 >gi|189465343|ref|ZP_03014128.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM 17393] gi|189437617|gb|EDV06602.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM 17393] Length = 154 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 94/152 (61%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ + Sbjct: 3 YMSEDGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ II A++ID S + D + V L +G K Y IV + EA+++ G +S+++P Sbjct: 63 LKTIIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++G++ + P G E++ + + Sbjct: 123 IAQGLLGKKVGEVAEIKVPQGMVNLEVMNISF 154 >gi|150392207|ref|YP_001322256.1| transcription elongation factor GreA [Alkaliphilus metalliredigens QYMF] gi|149952069|gb|ABR50597.1| transcription elongation factor GreA [Alkaliphilus metalliredigens QYMF] Length = 158 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T++G KI+ +L + R + I +A A+GDLSEN+EY AK Q Sbjct: 1 MTEKEVLLTAQGLKKIEDDLEQLKTVRRREVAGRIKQAIAFGDLSENSEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A+LEN++ +A VID S +S D ++ G TV + + + Y IVG EAD Sbjct: 61 EERIAKLENMLRKARVIDESEISSDVVSIGTTVEVKDLEYDEIVEYTIVGSAEADPYELR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ R L+G+++G+++ + P G Y++L++ Sbjct: 121 ISNESPVGRTLLGRKVGEVVDIQIPDGVTQYKVLKIT 157 >gi|153005528|ref|YP_001379853.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5] gi|152029101|gb|ABS26869.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5] Length = 169 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +GF ++ E +RP+I+ + A A GD SENAEY K+ + Sbjct: 8 MTKPRYITPEGFRRLASEHERIWSVDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELD 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+D R FGA V++ + + G+ + +++VG E DV +GL+ Sbjct: 68 RRLRFLSERMDALTVVDPRPHPHGRAFFGAWVTIED-DEGEARTFRLVGPDEFDVAAGLI 126 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ +P+ RAL+GK+ GD + P GE I+ V W Sbjct: 127 SVEAPLGRALLGKQEGDTVLFLRPAGEAELTIMAVRW 163 >gi|254461545|ref|ZP_05074961.1| transcription elongation factor GreA [Rhodobacterales bacterium HTCC2083] gi|206678134|gb|EDZ42621.1| transcription elongation factor GreA [Rhodobacteraceae bacterium HTCC2083] Length = 151 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EGR+ L Sbjct: 1 MTKSGHTAVEVELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEGRVKLL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I++ A VID +T++G I FGAT++LV++++ ++K +QIVG+ EA+V++GL++I SPI Sbjct: 61 EGILSLAAVIDPATLNG-TIKFGATITLVDEDTDEEKTWQIVGEHEANVEAGLLNIKSPI 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARALIGK+ GD + V PGG K+YE+L++ +I Sbjct: 120 ARALIGKDEGDSVEVRTPGGSKSYEVLKIEFI 151 >gi|302878073|ref|YP_003846637.1| transcription elongation factor GreB [Gallionella capsiferriformans ES-2] gi|302580862|gb|ADL54873.1| transcription elongation factor GreB [Gallionella capsiferriformans ES-2] Length = 178 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G K+Q EL + ERP ++ I+ A + GD SEN +Y K + R+ Sbjct: 21 KNYITPGGHQKLQTELEQLWKVERPVLVNTITWAASNGDRSENGDYIYGKRRLREIDRRV 80 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + +AEV+D + + +++ FGATV++ ++ G + Y IVG EAD+ G +S Sbjct: 81 RFLHKRLEQAEVVDPAKRGACEQVFFGATVTVGHED-GSEATYAIVGVDEADLTRGHISW 139 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR L+ GD+ + P G E+L+V ++ Sbjct: 140 VSPLARTLLKLHEGDVARLMTPAGIVELEVLRVCYL 175 >gi|116515169|ref|YP_802798.1| hypothetical protein BCc_237 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285435|sp|Q057J4|GREA_BUCCC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116257023|gb|ABJ90705.1| transcription elongation factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 159 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +KIP+T +GF+K++ EL+ + RP I+KAI+ AR GDL ENAEY +A+E Q+ E Sbjct: 1 MFNKIPMTLRGFNKLKSELKKLKYITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCE 60 Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+EN + RA++IDI+ + + FG+TV++++ ++ + Y IVGD EA+ + Sbjct: 61 NRICEIENKLLRAQIIDITKIPFKGIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFS 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +SI SP++RALIGK+ DII VN P G Y I ++ +I Sbjct: 121 ISIHSPMSRALIGKKKNDIIKVNTPTGYIKYIIKKIEYI 159 >gi|28378269|ref|NP_785161.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|254556476|ref|YP_003062893.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|300767199|ref|ZP_07077111.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180418|ref|YP_003924546.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257515|sp|Q88WQ9|GREA2_LACPL RecName: Full=Transcription elongation factor greA 2; AltName: Full=Transcript cleavage factor greA 2 gi|28271104|emb|CAD64009.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|254045403|gb|ACT62196.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|300495018|gb|EFK30174.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045909|gb|ADN98452.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 93/152 (61%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K+++EL + +RP II I AR+YGDLSEN+EY++AK Q+L E R+ Sbjct: 7 YPMTEEGKVKLEKELEDLRINQRPEIINRIKIARSYGDLSENSEYESAKNEQSLLENRIK 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +E+++ AE+ID + ++ G V+ E + ++Y IVG EAD G +S S Sbjct: 67 TVEHMLQYAEIIDSDKIDETEVSVGKIVTFKELPDEEPESYTIVGAAEADPMVGKISNDS 126 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PIA+ LIG + + +++N P G T +IL+V Sbjct: 127 PIAKGLIGHHVDEEVAINIPAGTMTVKILKVE 158 >gi|304440038|ref|ZP_07399931.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371530|gb|EFM25143.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 88/156 (56%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 8 MEKDIFFTPEGLEKIENEIEFLKTVRRKEVAERIKIALGYGDLSENSEYDEAKNEQAQVE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +LEN++ A VI+ ++ + + G+TVS+ + NS + Y IVG E+ G + Sbjct: 68 ERIVKLENMVRNAVVIESDDLNTEIVNIGSTVSVKDINSDKESTYTIVGSAESSPLEGKI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ LIGK++GD++ + P G T EI+ + Sbjct: 128 SNESPVGSGLIGKKIGDVVDIEVPKGTITLEIMNIS 163 >gi|291541638|emb|CBL14748.1| transcription elongation factor GreA [Ruminococcus bromii L2-63] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +T++G +++EL + +R I + I AR+YGDLSEN+EY AK Q + E Sbjct: 3 AKPTMLTAEGLKNLEEELAELKNVKRKEIAEKIKVARSYGDLSENSEYDDAKNEQAIMEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--GDQEADVQSGL 119 R+A +E+I+ A++ID S S D++ + V++ + + Y+IV G E + G Sbjct: 63 RIATIESILKTAQIIDESETSNDKVHLTSVVTIEMVGTDRQMTYKIVGSGSNETNPAQGK 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+ + +GD++ V PGG K ++IL++ Sbjct: 123 ISDESPVGKALMDRCVGDVVEVETPGGVKAFKILEIS 159 >gi|29377378|ref|NP_816532.1| transcription elongation factor GreA [Enterococcus faecalis V583] gi|255970856|ref|ZP_05421442.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T1] gi|255974431|ref|ZP_05425017.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T2] gi|256618301|ref|ZP_05475147.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ATCC 4200] gi|256761231|ref|ZP_05501811.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T3] gi|256852494|ref|ZP_05557870.1| transcription elongation factor GreA [Enterococcus faecalis T8] gi|256958150|ref|ZP_05562321.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis DS5] gi|256960296|ref|ZP_05564467.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Merz96] gi|256962732|ref|ZP_05566903.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis HIP11704] gi|257077423|ref|ZP_05571784.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis JH1] gi|257080712|ref|ZP_05575073.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis E1Sol] gi|257083386|ref|ZP_05577747.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Fly1] gi|257088056|ref|ZP_05582417.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis D6] gi|257091135|ref|ZP_05585496.1| prokaryotic transcription elongation factor greA [Enterococcus faecalis CH188] gi|257417082|ref|ZP_05594076.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis AR01/DG] gi|257417796|ref|ZP_05594790.1| transcription elongation factor greA [Enterococcus faecalis T11] gi|257420586|ref|ZP_05597576.1| transcription elongation factor greA [Enterococcus faecalis X98] gi|294779657|ref|ZP_06745048.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1] gi|300860921|ref|ZP_07107008.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD Ef11] gi|29344845|gb|AAO82602.1| transcription elongation factor GreA [Enterococcus faecalis V583] gi|255961874|gb|EET94350.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T1] gi|255967303|gb|EET97925.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T2] gi|256597828|gb|EEU17004.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ATCC 4200] gi|256682482|gb|EEU22177.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis T3] gi|256712348|gb|EEU27380.1| transcription elongation factor GreA [Enterococcus faecalis T8] gi|256948646|gb|EEU65278.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis DS5] gi|256950792|gb|EEU67424.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Merz96] gi|256953228|gb|EEU69860.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis HIP11704] gi|256985453|gb|EEU72755.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis JH1] gi|256988742|gb|EEU76044.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis E1Sol] gi|256991416|gb|EEU78718.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis Fly1] gi|256996086|gb|EEU83388.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis D6] gi|256999947|gb|EEU86467.1| prokaryotic transcription elongation factor greA [Enterococcus faecalis CH188] gi|257158910|gb|EEU88870.1| prokaryotic transcription elongation factor GreA [Enterococcus faecalis ARO1/DG] gi|257159624|gb|EEU89584.1| transcription elongation factor greA [Enterococcus faecalis T11] gi|257162410|gb|EEU92370.1| transcription elongation factor greA [Enterococcus faecalis X98] gi|294453314|gb|EFG21725.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1] gi|295114290|emb|CBL32927.1| transcription elongation factor GreA [Enterococcus sp. 7L76] gi|300849960|gb|EFK77710.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD Ef11] gi|323478879|gb|ADX78318.1| transcription elongation factor greA [Enterococcus faecalis 62] Length = 159 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+LGD + + PGG+ T +I +V Sbjct: 121 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 157 >gi|299769038|ref|YP_003731064.1| transcription elongation factor GreB [Acinetobacter sp. DR1] gi|298699126|gb|ADI89691.1| transcription elongation factor GreB [Acinetobacter sp. DR1] Length = 164 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + ++ID + ++ FGA V + + G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIIDYAPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GKE+ D I V+ P G+K + I + + Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156 >gi|291520199|emb|CBK75420.1| transcription elongation factor GreA [Butyrivibrio fibrisolvens 16/4] Length = 159 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T++G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKNLLTAEGLRVLEDELEDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I+ AEV+ I G TV+L++ ++ Y+IVG EA+ G +S Sbjct: 63 RIEEIEKILKNAEVV-TDEHDTKNINIGWTVTLLDVEFDEEVEYKIVGSTEANSLKGKIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SP+ +A++G + GD ++V GE Y+IL Sbjct: 122 NESPVGKAILGHKKGDTVTVETEAGEFQYKILA 154 >gi|294788550|ref|ZP_06753792.1| transcription elongation factor GreB [Simonsiella muelleri ATCC 29453] gi|294483427|gb|EFG31112.1| transcription elongation factor GreB [Simonsiella muelleri ATCC 29453] Length = 162 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D K +T +G +QQEL +ERP I++ ++ A + GD SEN +Y K Sbjct: 1 MSDVKYYMTPQGHQTLQQELYQLVHKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ L + A VID T F + +E+++G ++ +IVG+ E D Sbjct: 61 DRRIRFLTKRLENALVIDPETREFTDQIFFSATVTIERSNGVEQTVKIVGEDEIDATKNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S SP+ARALI GD + +N P G + +IL V +I Sbjct: 121 ISWKSPLARALIKAREGDRVWLNVPNGREAIDILVVEYI 159 >gi|218259539|ref|ZP_03475246.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii DSM 18315] gi|218225022|gb|EEC97672.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii DSM 18315] Length = 156 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+ Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I+ A +ID S + D + V + + Y +V D EA+++ G +++S+P Sbjct: 65 LKGLISNARLIDESRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GDI+ + P G ++EI+ + Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDIS 155 >gi|15676587|ref|NP_273731.1| transcription elongation factor GreB [Neisseria meningitidis MC58] gi|34222642|sp|Q9K0C5|GREB_NEIMB RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|7225917|gb|AAF41107.1| transcription elongation factor GreB [Neisseria meningitidis MC58] gi|316983663|gb|EFV62644.1| transcription elongation factor GreB [Neisseria meningitidis H44/76] gi|325139932|gb|EGC62462.1| transcription elongation factor GreB [Neisseria meningitidis CU385] gi|325200625|gb|ADY96080.1| transcription elongation factor GreB [Neisseria meningitidis H44/76] Length = 163 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ ++ G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RDDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|302327915|gb|ADL27116.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 155 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++KI T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE + Sbjct: 1 MEKIMFTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDN 60 Query: 62 -RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 M +L++ + RA+VI S D I FGAT++ + + YQ+V +EAD +G + Sbjct: 61 IEMPKLQDQLARAQVIAFDANS-DTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S SPI AL+GK+ GD + V P G+ +EI+ Sbjct: 120 SFKSPIGAALMGKKRGDTVEVVTPKGKNQFEIID 153 >gi|257440517|ref|ZP_05616272.1| transcription elongation factor GreA [Faecalibacterium prausnitzii A2-165] gi|257197021|gb|EEU95305.1| transcription elongation factor GreA [Faecalibacterium prausnitzii A2-165] Length = 161 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSASGLKAMQDELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A +ID S +S D +A G VS+ + + Y IVG EAD +G + Sbjct: 61 NRITELEQMVKNAVIIDESELSVDSVAVGTHVSIKMIGDDEAEEYDIVGRTEADPINGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 S SP+ AL+GK +G+ V P G+ YE+L + Sbjct: 121 SDESPVGHALLGKAVGEKAEVLLPSGQIVEYEVLAITH 158 >gi|331083388|ref|ZP_08332500.1| transcription elongation factor greA [Lachnospiraceae bacterium 6_1_63FAA] gi|330404081|gb|EGG83629.1| transcription elongation factor greA [Lachnospiraceae bacterium 6_1_63FAA] Length = 160 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 87/154 (56%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG GD +SV P G Y+IL + Sbjct: 124 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 157 >gi|51891618|ref|YP_074309.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51855307|dbj|BAD39465.1| transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 160 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + ++ +G ++Q+EL + + +R + + + EAR+YGDLSEN+EY A+ Q EGR+A Sbjct: 7 VVLSPEGLQQLQEELDYLRNVKRKEVAERLKEARSYGDLSENSEYDDARNEQAFVEGRIA 66 Query: 65 ELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 LEN + A ++D S +I G+TV L + GD Y IVG EAD +S Sbjct: 67 MLENTLRNAVIMDESEDEAEAGKIRLGSTVVLKDLEYGDLLEYTIVGTVEADPAKNKISN 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A++G+ G+++ V AP G YEI+ V Sbjct: 127 ESPVGKAIMGRTKGEVVVVEAPAGRIEYEIVDVK 160 >gi|254786831|ref|YP_003074260.1| transcription elongation factor GreB [Teredinibacter turnerae T7901] gi|237686835|gb|ACR14099.1| transcription elongation factor GreB [Teredinibacter turnerae T7901] Length = 172 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G K++ EL + + ERP + K ++ A + GD SENA+YQ K+ + R+ L Sbjct: 22 ITEEGLTKLKSELDYLWRTERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 81 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 I +V+ + + FG+ V + +G+ K +IVG E + +SI SP+ Sbjct: 82 RKRIDSLKVVRYAKEQEGSVYFGSWVKIEN-EAGENKELRIVGYDEIFGEKNYISIDSPM 140 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+ K++GD V GE +EI+++ + Sbjct: 141 AKALLRKKVGDEAIVKTEVGEFCWEIMEISY 171 >gi|332528000|ref|ZP_08404034.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus JA2] gi|332112574|gb|EGJ12367.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus JA2] Length = 193 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ +++EL ERP+I++ +S A GD SEN +Y K+ + R+ Sbjct: 32 YMTPQGWRMLREELMTLLDVERPKIVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRF 91 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEV D S G D++ FGATV+ G+++ I G EAD G VS + Sbjct: 92 LTKRLDIAEVADPSAHHGSDQVFFGATVTYANAK-GEERTITIKGIDEADNLKGEVSWVA 150 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARAL+ GD + + PGG +T E+++V + Sbjct: 151 PIARALLKSREGDEVQLMTPGGLETIEVVEVRY 183 >gi|169830348|ref|YP_001716330.1| transcription elongation factor GreA [Candidatus Desulforudis audaxviator MP104C] gi|169637192|gb|ACA58698.1| transcription elongation factor GreA [Candidatus Desulforudis audaxviator MP104C] Length = 163 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 90/150 (60%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G K+++EL + + +R + + I +A +GD+++++EY+ AK Q EGR+ L Sbjct: 10 LTVAGLRKLERELEYLKMVKRREVAERIKQAIEFGDITDSSEYEDAKNEQAFIEGRIITL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+VID + + + G+TV L + N G++ Y IVG E+D +S +S SP+ Sbjct: 70 EKALRNAKVIDAEDVGTEEVGIGSTVRLKDLNGGEELQYTIVGSMESDPRSNKISDESPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 RA++G+ +G+I+ + P G Y+I+ + Sbjct: 130 GRAMLGQRVGNIVEIQVPAGTLKYQIIDIT 159 >gi|149177265|ref|ZP_01855871.1| transcription elongation factor greA [Planctomyces maris DSM 8797] gi|148843979|gb|EDL58336.1| transcription elongation factor greA [Planctomyces maris DSM 8797] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D+ P+T +G+DK+++E+R + + P I + I++ARA GDL EN EY A +E Q + + Sbjct: 1 MDRHPITQEGYDKLREEIRHLESDVMPEIAEKIADARAEGDLKENTEYHAQREAQGMTQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +L++ + + D STM + FG+ V++ + G + Y+ VG E D ++ Sbjct: 61 KINQLKSKLANCYIADKSTMPKGVVTFGSIVTVKNLDDGLDEKYEFVGPGEEDYLGEVMK 120 Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SSP+A L+ K++GD + V P G +E++Q+ Sbjct: 121 ILTSSPLAEGLLNKKVGDKVEVEVPSGTLKFEVIQIE 157 >gi|291295486|ref|YP_003506884.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279] gi|290470445|gb|ADD27864.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279] Length = 159 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 3/159 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M DK + +T++G +++QEL + + E+ +I + + A A GDL ENA Y A+ Sbjct: 1 MADKKPVYLTAEGKARLEQELAYLKTEKMQQIAEEMGRAIAEGDLRENAGYDEARRAMWQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N R+AELE+I++R ++++ + G TV+L E +G + + +VG EADV SG Sbjct: 61 NNSRIAELEDILSRVQIVESGNGIPTEVQIGVTVAL-ETATGQRMSVTMVGSHEADVFSG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ +AL+GK++GD + V P G +TY ++++++ Sbjct: 120 KISNESPLGQALMGKKVGDEVQVKGPKGSQTYVVVELVY 158 >gi|126664880|ref|ZP_01735864.1| Transcription elongation factor [Marinobacter sp. ELB17] gi|126631206|gb|EBA01820.1| Transcription elongation factor [Marinobacter sp. ELB17] Length = 153 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 60/142 (42%), Positives = 101/142 (71%), Gaps = 1/142 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL+ + E+RPR+I +I+ AR +GDL ENAEY AA++ Q+ EGR+ E+ Sbjct: 1 MTTLGEARLRAELQKLKSEDRPRVIASIATAREHGDLKENAEYHAARDQQSFIEGRIQEI 60 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + A+VID++T+ + ++ FG TV L+ ++ + YQIVG+ EAD++ G +S+SSP Sbjct: 61 EGKLGGAQVIDVTTIENTGKVIFGTTVHLLNTDTDKQVVYQIVGEDEADIKDGKISVSSP 120 Query: 126 IARALIGKELGDIISVNAPGGE 147 IARAL+G+ G+++++ P G Sbjct: 121 IARALVGRRAGEVVAIRVPSGT 142 >gi|325955129|ref|YP_004238789.1| transcription elongation factor GreA [Weeksella virosa DSM 16922] gi|323437747|gb|ADX68211.1| transcription elongation factor GreA [Weeksella virosa DSM 16922] Length = 159 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MANIQYVTKEGLEKLRAELHELETYERPKISQQIAEARDKGDLSENAEYDAAKEAQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+++L+ I A +ID S + +I+ +TV + + S + +Y +V + EAD++ + Sbjct: 61 MRISKLQESIANARLIDESKLDATKISILSTVRIRNQVSKQELSYTLVPETEADLKKARI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S+++PIA+ L+GK +GDI + P G T+E+L + Sbjct: 121 SVNTPIAKGLLGKSVGDIAEIELPNGQTLTFEVLSIS 157 >gi|312131392|ref|YP_003998732.1| transcription elongation factor grea [Leadbetterella byssophila DSM 17132] gi|311907938|gb|ADQ18379.1| transcription elongation factor GreA [Leadbetterella byssophila DSM 17132] Length = 156 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 95/155 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + T +G+D ++ +L + + R + KA++EA+ GDLSENAEY AAK+ Q L E Sbjct: 1 MSYQYYTQEGYDNLKNKLNDLKTKGRREVSKALAEAKDKGDLSENAEYDAAKDAQALLET 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A+LE + +A ++D +T+ +++ TV + + Y +V ++EAD++ G +S Sbjct: 61 EIAKLEELFAKARILDENTIDTSKVSLMTTVKIKNLKNKATMKYTLVAEEEADLKQGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I+SP A+ L+GK++GD + APGG EIL++ Sbjct: 121 INSPFAKGLLGKKVGDKADIQAPGGVVEVEILEIT 155 >gi|238917593|ref|YP_002931110.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] gi|238872953|gb|ACR72663.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] Length = 158 Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 84/156 (53%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T KG+D+ L + R + + + EAR GDLSENAEY AAK+ Q E Sbjct: 1 MAEKQFLTKKGYDERVARLEELKVVRRKEVAQKLKEAREQGDLSENAEYDAAKDEQRDIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AELE I+ EVI + + D + + V L + + Y IVG EAD + + Sbjct: 61 TEIAELEAILANCEVIQDNDKNKDVVKMESVVVLHDVEIDEDIEYTIVGSSEADSLNNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ ALIGK+ GD + V AP GE Y ++ V Sbjct: 121 SNESPLGAALIGKKKGDTVKVEAPVGEIEYTVVSVK 156 >gi|56551614|ref|YP_162453.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761261|ref|ZP_04759349.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752794|ref|YP_003225687.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543188|gb|AAV89342.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374168|gb|EER63665.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552157|gb|ACV75103.1| transcription elongation factor GreB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 165 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K P +T +G +K+++ ERP+I++ +S A GD SEN +Y ++ Sbjct: 1 MTTKNPNYITPQGLEKLKERYHHLMNTERPKIVEIVSWAAGNGDRSENGDYIYGRKKMRE 60 Query: 59 NEGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + ++ L + A V+D S + ++ FGATV++ +++ ++ +VG+ EAD Sbjct: 61 IDRELSWLSRRLKAARVVDPSAVEDRSKVWFGATVTIADEDDN-QRQVALVGEDEADASQ 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +S SP+ARAL G LGD+ V P GEK +E++++ + Sbjct: 120 GRISWKSPLARALRGAALGDLRIVRLPAGEKEWEVIEIGY 159 >gi|94497870|ref|ZP_01304436.1| transcription elongation factor [Sphingomonas sp. SKA58] gi|94422759|gb|EAT07794.1| transcription elongation factor [Sphingomonas sp. SKA58] Length = 161 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M P +T +GF K++ + ERP I++ +S A GD SEN +Y ++ Sbjct: 1 MATPYPNYITPEGFAKLRADYDHLLGVERPSIVEVVSWAAGNGDRSENGDYLYGRKRMRE 60 Query: 59 NEGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 +G++ L + A+V+D R+ FGATV++ +++ + +VG+ E DV + Sbjct: 61 IDGQLKRLSKKMKDAKVVDPWQQPDKSRVYFGATVTIADEDDNH-RTVTLVGNDETDVDA 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G + SPIARAL G +GD+ V P GE+ YE++ + + Sbjct: 120 GRIGWGSPIARALRGAAVGDLRRVMLPAGEREYEVMAIRY 159 >gi|124267908|ref|YP_001021912.1| transcription elongation factor [Methylibium petroleiphilum PM1] gi|124260683|gb|ABM95677.1| transcription elongation factor [Methylibium petroleiphilum PM1] Length = 213 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T GF +++ EL +ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 55 KNYITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRI 114 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV D S G D++ FGATV+ + G ++ I G EAD VS Sbjct: 115 RFLTKRLEIAEVADPSVHRGSDQVFFGATVTYAAPD-GVERTITIKGIDEADNLQAEVSW 173 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ +GD +++ P G +T E+++V + Sbjct: 174 ISPVARALLKARVGDEVTLLTPQGPQTIEVIEVRY 208 >gi|291520868|emb|CBK79161.1| transcription elongation factor GreA [Coprococcus catus GD/7] Length = 160 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAETKKNIMTFAGLRALEDELFDLKVYKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRD 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ELE ++ EV+ + D + G+ V L + ++ Y IVG EAD +G Sbjct: 61 IEARIEELEKLLKNVEVVGQDEVDADTVGIGSRVKLYDVEMDEEVEYTIVGSTEADALNG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ ALIG ++G+ I V G+ ++IL++ Sbjct: 121 KISNESPVGAALIGSKVGETIVVETISGDLEFKILEI 157 >gi|304310877|ref|YP_003810475.1| Transcription elongation factor [gamma proteobacterium HdN1] gi|301796610|emb|CBL44822.1| Transcription elongation factor [gamma proteobacterium HdN1] Length = 158 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +D +T +G+ ++QQEL +ERP++ K + A + GD SENA+YQ K+ + Sbjct: 1 MDTNVITPEGYTELQQELDELWYKERPKVTKLVQWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + + V++ +++ ++ FGA V LV+ + + +++IVG E + VS Sbjct: 61 RVRFLRGRLGKLRVVEYNSVQEGKVYFGAWVGLVDVDD-QRLSFRIVGPDEIYGKKNYVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +++PI RA +GK GD I+V P K +EI + + Sbjct: 120 VNAPIVRACLGKSEGDEITVRTPEATKEWEIESIEY 155 >gi|239997048|ref|ZP_04717572.1| transcription elongation factor GreB [Alteromonas macleodii ATCC 27126] Length = 161 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D + ++ FGA V + +G ++VG E + +SI SP+ Sbjct: 66 RKCLENLKVVDYDSQQEGKVFFGAWVEIEN-EAGKVMELRLVGYDEIFGRKDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+GKE D V G K + I ++ + Sbjct: 125 ARALLGKEEDDEFVVKTETGTKEWWINRIWY 155 >gi|186475439|ref|YP_001856909.1| transcription elongation factor GreB [Burkholderia phymatum STM815] gi|184191898|gb|ACC69863.1| transcription elongation factor GreB [Burkholderia phymatum STM815] Length = 190 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 29 KNYITPAGYRRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AEV++ S + D++ FGATV G+ +IVG E ++ G VS Sbjct: 89 RFLTKRIDLAEVVNSSRQENTDQVFFGATVDYA-TEDGETHTVRIVGIDEVNLDEGHVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARAL+ ++GD ++++ P G + ++L V + Sbjct: 148 ISPIARALLKAKVGDQVTLHTPAGPQPIDVLDVRY 182 >gi|85374381|ref|YP_458443.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] gi|84787464|gb|ABC63646.1| transcription elongation factor [Erythrobacter litoralis HTCC2594] Length = 159 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G+ ++ ERP I++ +S A GD SEN +Y ++ + +A Sbjct: 7 PITPGGYAALKARYDRLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELAH 66 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VI+ S DR FGAT++L +++ +K +VGD E D +G + SS Sbjct: 67 LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDD-ARKTVTLVGDDEQDASAGKIGWSS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL G +GD+ +V+ P GE+ +E++ + + Sbjct: 126 PLARALRGARVGDLRTVHLPSGEREWEVMAIAY 158 >gi|154490393|ref|ZP_02030654.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC 43184] gi|154089004|gb|EDN88048.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC 43184] Length = 156 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++++ Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLSQ 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I+ A +ID + + D + V + + Y +V D EA+++ G +++S+P Sbjct: 65 LKGLISNARLIDETRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GDI+ + P G ++EI+ + Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDIS 155 >gi|34498839|ref|NP_903054.1| transcription elongation factor GreB [Chromobacterium violaceum ATCC 12472] gi|34104691|gb|AAQ61048.1| transcription elongation factor [Chromobacterium violaceum ATCC 12472] Length = 184 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 79/155 (50%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 27 KNYITPMGWQRLKDELYHLVNRERPEIVQVVNWAASNGDRSENGDYLYGKRRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + AEV+D F + L+++ G ++ IVG E D+Q G +S Sbjct: 87 RFLTKRLEIAEVVDPEAREATDQVFFSATVLIQRGDGSEQRLSIVGVDEIDLQRGRISWI 146 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIARAL+ GD + P G++ E+L+V ++ Sbjct: 147 SPIARALLKSREGDTVLFRGPDGDEDIEVLEVSYV 181 >gi|293609918|ref|ZP_06692220.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828370|gb|EFF86733.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 164 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D S ++ FGA V + + G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GKE+ D I V+ P G+K + I + + Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156 >gi|304436291|ref|ZP_07396269.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370696|gb|EFM24343.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 156 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q Sbjct: 1 MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + ELEN I +++I G + G+ V + + +++ + IVG EAD G Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKTVTMGSRVMVKDLEFDEEETFLIVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+G+++G I+VNAP G Y+I+ + Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155 >gi|317495734|ref|ZP_07954099.1| transcription elongation factor GreA [Gemella moribillum M424] gi|316914187|gb|EFV35668.1| transcription elongation factor GreA [Gemella moribillum M424] Length = 162 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 4/156 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ Sbjct: 8 EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEFKISND 126 Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156 SP+A+AL+GKE+GD++ V+ P G ++L+V Sbjct: 127 SPVAQALLGKEVGDVVKVSLPTGPEDSMDIKVLEVE 162 >gi|88798240|ref|ZP_01113826.1| transcription elongation factor GreB [Reinekea sp. MED297] gi|88779016|gb|EAR10205.1| transcription elongation factor GreB [Reinekea sp. MED297] Length = 170 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G +++ EL + ERPR+ + +S+A GD SENAEY K+ + R+ Sbjct: 14 YITPEGEARMRAELHELWKVERPRVTQEVSDAAKQGDRSENAEYIYGKKRLRQIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + +V+ R+ FGA V +V+++ + ++IVG E DV +S+ SP Sbjct: 74 LTKRLEKLQVVHARPDDQSRVFFGAWVRVVDED-ESPRVFRIVGTDEFDVDPRYISVDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K++ D + V P GE Y + Q+ + Sbjct: 133 MARALLKKQVDDEVIVRLPDGEAVYYVDQISY 164 >gi|300813174|ref|ZP_07093548.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313124166|ref|YP_004034425.1| transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300495832|gb|EFK30980.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280729|gb|ADQ61448.1| Transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 162 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G Sbjct: 61 EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 +S SPI +AL+G + G+ + +N +Y+++ Sbjct: 121 ISNESPIGKALLGHKKGETVKINVDSANVSYDVV 154 >gi|144898302|emb|CAM75166.1| Prokaryotic transcription elongation factor GreA/GreB [Magnetospirillum gryphiswaldense MSR-1] Length = 180 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K VT +G + +EL + ERPRI++ +S A GD SEN +Y K+ + R+ Sbjct: 24 KNYVTPQGHRALIEELDQLWRVERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRV 83 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I +EV+ R+ FGATV+ E++ G ++ +VG EAD+ G VS Sbjct: 84 RFLRKRIENSEVVAPELQTDRSRVYFGATVTYAEED-GAERKVTLVGVDEADINHGKVSW 142 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ARAL+ E+GD + + +P G + E++ + ++ Sbjct: 143 VSPVARALLRAEVGDTVIIRSPTGRREIEVVAIEYL 178 >gi|94499115|ref|ZP_01305653.1| transcription elongation factor GreB [Oceanobacter sp. RED65] gi|94428747|gb|EAT13719.1| transcription elongation factor GreB [Oceanobacter sp. RED65] Length = 163 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T +G ++ EL + + ERP++ + + +A A GD SENAEY K+ + Sbjct: 1 MSKADLITPEGEQTLKDELDYLWRTERPKVTQQVKDAAALGDRSENAEYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + + V+ ++ F A + + G Y+IVG E D + + Sbjct: 61 RRVRFLSKRLEKLTVVRDKPADQTKVFFSAWIQIEN-EQGQVHIYRIVGPDEIDHRPEYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI+SP+A+AL+GK+ GD ++V P G + +V + Sbjct: 120 SINSPVAKALLGKQAGDDVAVQTPKGLSELYLDKVSY 156 >gi|90407158|ref|ZP_01215346.1| transcription elongation factor [Psychromonas sp. CNPT3] gi|90311734|gb|EAS39831.1| transcription elongation factor [Psychromonas sp. CNPT3] Length = 163 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 7/162 (4%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF +Q EL +E RP I + ++ A + GD S+NA+Y+ K + + Sbjct: 1 MRTNLITPEGFKTLQTELEHLWREYRPEITRKVTWAASLGDRSDNADYKENKRILRQIDS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD------V 115 R+ L + + +I S +++ FGA +S+ + G+ KN++IVG E Sbjct: 61 RIRFLTKRLQQVSIISPSKQQANKVFFGAKLSIEN-DEGEIKNFKIVGPDEIYQRGTLQT 119 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +SI SP+ARAL+ E+ D V P G +T+ IL + + Sbjct: 120 RKDYISIDSPMARALLKLEVDDEAQVKTPTGIQTWYILTIDY 161 >gi|313895523|ref|ZP_07829079.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 137 str. F0430] gi|312975649|gb|EFR41108.1| transcription elongation factor GreA [Selenomonas sp. oral taxon 137 str. F0430] Length = 156 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q Sbjct: 1 MTEKKVMLTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + ELEN I +++I G + G+ V++ + + + + IVG EAD G Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+G+++G +I+V+AP G Y+I+ + Sbjct: 119 ISNESPLGMALLGQKIGKVINVSAPAGMIRYKIVDIK 155 >gi|121634487|ref|YP_974732.1| transcription elongation factor GreB [Neisseria meningitidis FAM18] gi|304388016|ref|ZP_07370187.1| transcription elongation factor GreB [Neisseria meningitidis ATCC 13091] gi|313668831|ref|YP_004049115.1| transcription elongation factor [Neisseria lactamica ST-640] gi|120866193|emb|CAM09933.1| putative transcription elongation factor [Neisseria meningitidis FAM18] gi|254670524|emb|CBA06313.1| Transcription elongation factor [Neisseria meningitidis alpha153] gi|254673612|emb|CBA09140.1| Transcription elongation factor [Neisseria meningitidis alpha275] gi|304337964|gb|EFM04103.1| transcription elongation factor GreB [Neisseria meningitidis ATCC 13091] gi|308388876|gb|ADO31196.1| putative transcription elongation factor [Neisseria meningitidis alpha710] gi|313006293|emb|CBN87756.1| putative transcription elongation factor [Neisseria lactamica 020-06] gi|325127803|gb|EGC50711.1| transcription elongation factor GreB [Neisseria meningitidis N1568] gi|325129850|gb|EGC52657.1| transcription elongation factor GreB [Neisseria meningitidis OX99.30304] gi|325131857|gb|EGC54557.1| transcription elongation factor GreB [Neisseria meningitidis M6190] gi|325133796|gb|EGC56452.1| transcription elongation factor GreB [Neisseria meningitidis M13399] gi|325136088|gb|EGC58698.1| transcription elongation factor GreB [Neisseria meningitidis M0579] gi|325137907|gb|EGC60482.1| transcription elongation factor GreB [Neisseria meningitidis ES14902] gi|325141938|gb|EGC64378.1| transcription elongation factor GreB [Neisseria meningitidis 961-5945] gi|325143923|gb|EGC66233.1| transcription elongation factor GreB [Neisseria meningitidis M01-240013] gi|325203776|gb|ADY99229.1| transcription elongation factor GreB [Neisseria meningitidis M01-240355] gi|325206467|gb|ADZ01920.1| transcription elongation factor GreB [Neisseria meningitidis M04-240196] gi|325207735|gb|ADZ03187.1| transcription elongation factor GreB [Neisseria meningitidis NZ-05/33] Length = 163 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|332143379|ref|YP_004429117.1| transcription elongation factor GreB [Alteromonas macleodii str. 'Deep ecotype'] gi|327553401|gb|AEB00120.1| transcription elongation factor GreB [Alteromonas macleodii str. 'Deep ecotype'] Length = 161 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R+ L Sbjct: 6 ITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D ++ FGA V + +G ++VG E + +SI SP+ Sbjct: 66 RKCLENLKVVDYDPQQEGKVFFGAWVEIEN-EAGKVMELRLVGYDEIFGRRDYISIDSPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARALIGKE D V G K + I ++ + Sbjct: 125 ARALIGKEEDDEFVVKTETGTKEWWINRIWY 155 >gi|166030714|ref|ZP_02233543.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC 27755] gi|166029506|gb|EDR48263.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC 27755] Length = 160 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 84/155 (54%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G +++EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKKLLTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D+I G TV + ++ +++VG EA+ G +S Sbjct: 63 RIEELEAILKNAEVVVEDEVDFDKINVGCTVKAYDITFDEEIEFKLVGSTEANSLEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK +GD++ V G Y++L + Sbjct: 123 NESPVGHALIGKTIGDVVEVETQAGVMQYKVLDIT 157 >gi|325123157|gb|ADY82680.1| transcription elongation factor GreB [Acinetobacter calcoaceticus PHEA-2] Length = 164 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++ G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLISRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D S ++ FGA V + + G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GKE+ D I V+ P G+K + I ++ + Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINKIRY 156 >gi|313889156|ref|ZP_07822812.1| transcription elongation factor GreA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844896|gb|EFR32301.1| transcription elongation factor GreA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 157 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 86/156 (55%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E Sbjct: 1 MEKDIFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A+LE ++ A++ID ++ D + G+ V + E ++ ++ Y IVG EAD G + Sbjct: 61 ERIAKLEMMVRNAKIIDEKDLNTDVVNIGSNVKVRELDTMEEDEYTIVGSAEADPLEGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ LIG +GD++ V P G YEI + Sbjct: 121 SNESPVGSKLIGNRVGDVVEVEVPDGIIKYEICGIT 156 >gi|168830125|gb|ACA34353.1| transcription elongation factor [Paenibacillus polymyxa] Length = 165 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 8 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 67 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D Sbjct: 68 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 127 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+ G ++ V P G Y+I+ + Sbjct: 128 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 164 >gi|59800713|ref|YP_207425.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA 1090] gi|194097981|ref|YP_002001029.1| transcription elongation factor GreB [Neisseria gonorrhoeae NCCP11945] gi|239998449|ref|ZP_04718373.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|240013574|ref|ZP_04720487.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI18] gi|240016013|ref|ZP_04722553.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA6140] gi|240080154|ref|ZP_04724697.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|240112368|ref|ZP_04726858.1| transcription elongation factor GreB [Neisseria gonorrhoeae MS11] gi|240115108|ref|ZP_04729170.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID18] gi|240117391|ref|ZP_04731453.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID1] gi|240120643|ref|ZP_04733605.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID24-1] gi|240122948|ref|ZP_04735904.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID332] gi|240125199|ref|ZP_04738085.1| transcription elongation factor GreB [Neisseria gonorrhoeae SK-92-679] gi|240127654|ref|ZP_04740315.1| transcription elongation factor GreB [Neisseria gonorrhoeae SK-93-1035] gi|254493169|ref|ZP_05106340.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291] gi|260441075|ref|ZP_05794891.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|268594310|ref|ZP_06128477.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|268596305|ref|ZP_06130472.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|268598428|ref|ZP_06132595.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11] gi|268600782|ref|ZP_06134949.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18] gi|268603087|ref|ZP_06137254.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1] gi|268681568|ref|ZP_06148430.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332] gi|268683796|ref|ZP_06150658.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-92-679] gi|268686038|ref|ZP_06152900.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-93-1035] gi|291044409|ref|ZP_06570118.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|293399588|ref|ZP_06643741.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62] gi|59717608|gb|AAW89013.1| putative transcription elongation [Neisseria gonorrhoeae FA 1090] gi|193933271|gb|ACF29095.1| transcription elongation factor GreB [Neisseria gonorrhoeae NCCP11945] gi|226512209|gb|EEH61554.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291] gi|268547699|gb|EEZ43117.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02] gi|268550093|gb|EEZ45112.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19] gi|268582559|gb|EEZ47235.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11] gi|268584913|gb|EEZ49589.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18] gi|268587218|gb|EEZ51894.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1] gi|268621852|gb|EEZ54252.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332] gi|268624080|gb|EEZ56480.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-92-679] gi|268626322|gb|EEZ58722.1| transcription elongation factor greB [Neisseria gonorrhoeae SK-93-1035] gi|291011303|gb|EFE03299.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2] gi|291610157|gb|EFF39279.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62] gi|317163732|gb|ADV07273.1| transcription elongation factor GreB [Neisseria gonorrhoeae TCDC-NG08107] Length = 163 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|332972986|gb|EGK10926.1| transcription elongation factor GreB [Kingella kingae ATCC 23330] Length = 168 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 4/161 (2%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D K +T G ++Q EL +ERP I + ++ A + GD SEN +Y K Sbjct: 6 MTDTPKNYITPTGHRRLQDELYQLVHKERPEIAQIVNWAASNGDRSENGDYLYGKRRMCE 65 Query: 59 NEGRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + R+ L + A V++ T D+I F ATV+L E+ +G ++ +IVG+ E D Sbjct: 66 IDRRIRFLTKRLEHALVVNPETREPTDQIFFAATVTL-ERGNGAEQVVKIVGEDEIDSAQ 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 G +S SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 GKISWKSPLARVLIKAREGDTVWLNTPDGREQIEILIVEYI 165 >gi|308066908|ref|YP_003868513.1| transcription elongation factor greA (transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|310639545|ref|YP_003944303.1| transcription elongation factor [Paenibacillus polymyxa SC2] gi|305856187|gb|ADM67975.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Paenibacillus polymyxa E681] gi|309244495|gb|ADO54062.1| Transcription elongation factor [Paenibacillus polymyxa SC2] Length = 158 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q Sbjct: 1 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D Sbjct: 61 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK+ G ++ V P G Y+I+ + Sbjct: 121 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 157 >gi|218767812|ref|YP_002342324.1| transcription elongation factor GreB [Neisseria meningitidis Z2491] gi|34222639|sp|Q9JVD0|GREB_NEIMA RecName: Full=Transcription elongation factor greB; AltName: Full=Transcript cleavage factor greB gi|121051820|emb|CAM08126.1| putative transcription elongation factor [Neisseria meningitidis Z2491] gi|319410062|emb|CBY90396.1| transcription elongation factor GreB (transcript cleavage factor GreB) [Neisseria meningitidis WUE 2594] Length = 163 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|145589258|ref|YP_001155855.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047664|gb|ABP34291.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 166 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T G ++I+ EL +RP ++K + A + GD SEN +Y K+ + Sbjct: 1 MEEKNYITPVGHERIKTELLQLLNLDRPEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVS---LVEKNSGDKKNYQIVGDQE 112 R+ L + A V+D S ++I FGATV+ L ++G + IVG E Sbjct: 61 RRIRFLNQRLEFAVVVDNSARKSGDQDAEQIFFGATVTYSPLKGADAGKEITITIVGVDE 120 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 D++ VS SPIA+ALI LGD + + P G EIL+V ++ Sbjct: 121 VDLEKNHVSWVSPIAKALIKARLGDCVKIQTPTGPTEIEILEVQYL 166 >gi|295110734|emb|CBL24687.1| transcription elongation factor GreA [Ruminococcus obeum A2-162] Length = 160 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 86/154 (55%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNLLTYAGLKKLEDELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + DRI+ G V + + ++ ++VG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDRISVGCKVKVYDYEFEEEMELKLVGSTEANSLEGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG GD++ V P G Y++L++ Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPMGIMKYKVLEIQ 157 >gi|269836289|ref|YP_003318517.1| transcription elongation factor GreA [Sphaerobacter thermophilus DSM 20745] gi|269785552|gb|ACZ37695.1| transcription elongation factor GreA [Sphaerobacter thermophilus DSM 20745] Length = 157 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++IP+T +G +Q EL R I +A+ AR GDL ENA Y AAK Q EGR Sbjct: 4 ERIPITKEGLKALQDELDDLVNRRRVEIAQALQAAREEGDLRENAGYDAAKHDQAFIEGR 63 Query: 63 MAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + E+E+I+ RAEVID + + G+TV++ + G ++ Y IVG EA +G +S Sbjct: 64 IREIEDILRRAEVIDEAPNGDARVVRLGSTVTI--EIDGAQETYTIVGAVEAKPAAGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP RAL+G G+ + + P I+ V Sbjct: 122 NESPFGRALLGHREGEEVEIQTPAAVLHARIVNVE 156 >gi|325685811|gb|EGD27883.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 162 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G Sbjct: 61 EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 VS SPI +AL+G + G+ + +N +Y+++ Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154 >gi|251796519|ref|YP_003011250.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] gi|247544145|gb|ACT01164.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2] Length = 158 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T +G K++ EL + +R + + A +YGDL EN+EY +AK+ Q E R Sbjct: 4 NEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFMETR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE ++ A V ++ ++ GA V L + +K Y++VG EADV +S Sbjct: 64 ITQLEKMLKTARV--SNSKDTTKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENKISY 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GK +GD ISV+AP G YE+L++ Sbjct: 122 ESPMGQALMGKSVGDTISVDAPIGVIKYELLEIK 155 >gi|161869630|ref|YP_001598797.1| transcription elongation factor GreB [Neisseria meningitidis 053442] gi|296314716|ref|ZP_06864657.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC 43768] gi|161595183|gb|ABX72843.1| transcription elongation factor [Neisseria meningitidis 053442] gi|296838551|gb|EFH22489.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC 43768] Length = 163 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|313894662|ref|ZP_07828225.1| transcription elongation factor GreA [Veillonella sp. oral taxon 158 str. F0412] gi|313440852|gb|EFR59281.1| transcription elongation factor GreA [Veillonella sp. oral taxon 158 str. F0412] Length = 157 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V + +T+ G K+++EL + + R + + I A YGD+SEN+EY AK Q EG Sbjct: 4 VKETLLTADGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELEN I A++ID S + GD ++ G+ V +++ D+ Y IVG EAD + +S Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVIVLDTMYNDELEYVIVGSSEADPFNNRIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +A++GK GD + V+ P G T+++L + Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157 >gi|289626983|ref|ZP_06459937.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646809|ref|ZP_06478152.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 2250] gi|330867499|gb|EGH02208.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 157 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVHYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE GD + VN P EK + + +++ Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEVEKLWFVNSIVY 155 >gi|160939909|ref|ZP_02087256.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC BAA-613] gi|158437343|gb|EDP15108.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC BAA-613] Length = 160 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+ Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ RALIGK +G+ + V G+ Y++L++ Sbjct: 121 ISNESPVGRALIGKVVGECVDVETQAGDIQYKVLEIQ 157 >gi|325202515|gb|ADY97969.1| transcription elongation factor GreB [Neisseria meningitidis M01-240149] Length = 163 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|320353912|ref|YP_004195251.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM 2032] gi|320122414|gb|ADW17960.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM 2032] Length = 161 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 111/156 (71%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +IP++ G ++++EL ++ ERP I+KAI ARA+GDLSENAEY AAKE Q+L E Sbjct: 1 MVVRIPMSLTGNRQLREELERLERVERPEIVKAIEVARAHGDLSENAEYHAAKERQSLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ EL++ + RAEVID S +S +R FG V+L++ + + YQ++G +EADV+ G + Sbjct: 61 GRILELKDKLGRAEVIDCSKVSTNRAVFGTVVTLMDLTTEVEVTYQLLGPEEADVKKGSI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SP+ +AL+GKE+GD + PGG + +E++ + Sbjct: 121 SVLSPLGQALLGKEIGDEVVTKTPGGMREFEVIDIT 156 >gi|295102173|emb|CBK99718.1| transcription elongation factor GreA [Faecalibacterium prausnitzii L2-6] Length = 161 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 1/158 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I A VID S +S + ++ G V++ + + + Y IVG EAD +G + Sbjct: 61 NRITELEQMIKNAVVIDESELSVESVSVGTHVTIQMEGEDEVEEYDIVGRTEADPLNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 S SP+ AL+ K +GD V P G Y++L + Sbjct: 121 SDESPVGHALLEKAVGDTAEVLLPTGLTVNYKVLGITH 158 >gi|83313517|ref|YP_423781.1| transcription elongation factor GreB [Magnetospirillum magneticum AMB-1] gi|82948358|dbj|BAE53222.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 182 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K + +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ Sbjct: 27 KNYMRPQGFAALKAELSHLHKIERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D D+I FGATV+ ++ IVG EAD++ GL+S Sbjct: 87 RFLTKRMESAHVVDPEQQKKRDQIFFGATVTYANARD-EEITVTIVGIDEADLEKGLISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD + V P G + E++ + + Sbjct: 146 ISPVARALLKAAEGDSVPVRTPSGVEMIEVVAISY 180 >gi|288801019|ref|ZP_06406475.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299 str. F0039] gi|288331953|gb|EFC70435.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299 str. F0039] Length = 155 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 91/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDKLVAELKHLESVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ ++ A+++D S +S D + + V + + K Y IV + EA+++ G ++I++P Sbjct: 63 IKVSLSEAKIVDTSLLSADAVQIMSKVVMTNLGNNAKMTYTIVSESEANLKEGKLAITTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G I + Sbjct: 123 IAQGLLNKKVGDEVEIKIPNGTIKLRIDAIS 153 >gi|325197909|gb|ADY93365.1| transcription elongation factor GreB [Neisseria meningitidis G2136] Length = 163 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGNYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|319638512|ref|ZP_07993274.1| transcription elongation factor greB [Neisseria mucosa C102] gi|317400261|gb|EFV80920.1| transcription elongation factor greB [Neisseria mucosa C102] Length = 163 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D D+I FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQIFFGATVGLL-RGDGREQTVKIVGVDEIDTAKNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR+LI GD + +N P G++ EIL V +I Sbjct: 125 ISPLARSLIKAREGDEVVLNTPEGQEVIEILSVEYI 160 >gi|167769661|ref|ZP_02441714.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM 17241] gi|167668022|gb|EDS12152.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM 17241] Length = 151 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 86/149 (57%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G+D +++EL + R I + I AR +GDLSEN+EY AK Q + E R+ +L Sbjct: 1 MTQEGYDALKKELNELKSVTRGEISEKIRVARGFGDLSENSEYDEAKNEQAVVEARIKKL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E+ + ++I+ +S D ++ G+ V +++ + ++ Y I E+ +S SP+ Sbjct: 61 EDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESPV 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 + LIG ++GD++ ++AP +IL++ Sbjct: 121 GKGLIGHKVGDVVEIHAPAAVLKLKILEI 149 >gi|257867772|ref|ZP_05647425.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC30] gi|257874099|ref|ZP_05653752.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC10] gi|257876660|ref|ZP_05656313.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC20] gi|325571033|ref|ZP_08146605.1| transcription elongation factor GreA [Enterococcus casseliflavus ATCC 12755] gi|257801855|gb|EEV30758.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC30] gi|257808263|gb|EEV37085.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC10] gi|257810826|gb|EEV39646.1| prokaryotic transcription elongation factor GreA [Enterococcus casseliflavus EC20] gi|325156118|gb|EGC68304.1| transcription elongation factor GreA [Enterococcus casseliflavus ATCC 12755] Length = 159 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I AE+ID + D ++ G TV VE GD++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDSDEVSIGKTVIFVELPDGDEEEYMIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIARALIGK++ D ++++ PGG+ I +V Sbjct: 121 ISNDSPIARALIGKKVNDEVTISTPGGDMQVRITEVK 157 >gi|300987223|ref|ZP_07178060.1| transcription elongation factor GreB [Escherichia coli MS 200-1] gi|300306258|gb|EFJ60778.1| transcription elongation factor GreB [Escherichia coli MS 200-1] Length = 170 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAP 144 SP+ARAL+ KE+GD+ VN P Sbjct: 133 DSPMARALLKKEVGDLAVVNNP 154 >gi|290969240|ref|ZP_06560765.1| transcription elongation factor GreA [Megasphaera genomosp. type_1 str. 28L] gi|290780746|gb|EFD93349.1| transcription elongation factor GreA [Megasphaera genomosp. type_1 str. 28L] Length = 161 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G K++ EL + R + K I EA A GDLSEN+EY AK Q E Sbjct: 1 MNTETLITQEGLQKLKDELNELKSVRRITVSKRIQEAIALGDLSENSEYDDAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+AELE I A++I + S ++ G+ V L + +G++ +Y +VG EAD + + Sbjct: 61 GRIAELEGKIRTAKIIQAADDSAAKVRLGSHVVLEDVETGERFDYTVVGTAEADPFNNKI 120 Query: 121 SISSPIARALIG----KELGDIISVNAPGGEKTYEIL 153 S SP+ +A++G ++ +++V AP GE Y IL Sbjct: 121 SNESPVGKAILGQLISQQEPVVVTVKAPAGELQYRIL 157 >gi|323485861|ref|ZP_08091196.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323693200|ref|ZP_08107418.1| transcription elongation factor [Clostridium symbiosum WAL-14673] gi|323400849|gb|EGA93212.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323502683|gb|EGB18527.1| transcription elongation factor [Clostridium symbiosum WAL-14673] Length = 160 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKNILTYAGLKQYEDELQDLKVNKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ LE ++ AEV+ + D+I+ G V L++ ++ ++IVG EA+ Sbjct: 61 EARIEALEKLLKNAEVVVEDEIDLDKISVGCKVKLLDVEEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK+ G+ + V G Y+IL++ Sbjct: 121 ISNESPVGHALLGKKEGETVQVETQAGMIHYKILEIQ 157 >gi|71906765|ref|YP_284352.1| transcription elongation factor GreB [Dechloromonas aromatica RCB] gi|71846386|gb|AAZ45882.1| transcription elongation factor GreB [Dechloromonas aromatica RCB] Length = 185 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G D+++ EL + ERP +++ +S A + GD SEN +Y K + R+ Sbjct: 30 YITPAGHDRLKSELEHLVKRERPHVVEIVSWAASNGDRSENGDYIYGKRRLREIDRRIRF 89 Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + AEVID D+I FGATV++ N G Y IVG E DV G +S S Sbjct: 90 LTKRLDVAEVIDPLRQGDNDQIFFGATVTIAGIN-GVANTYTIVGVDETDVSRGRISWIS 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARALI GD I +P G + +IL+V++ Sbjct: 149 PLARALIKSREGDSIRFQSPLGVREIDILEVVY 181 >gi|261417196|ref|YP_003250879.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373652|gb|ACX76397.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp. succinogenes S85] Length = 169 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 89/154 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ Sbjct: 16 KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 75 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ Sbjct: 76 RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 135 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI AL GK+ GD + V AP G+ YEIL+V + Sbjct: 136 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 169 >gi|126664546|ref|ZP_01735530.1| transcription elongation factor GreB [Marinobacter sp. ELB17] gi|126630872|gb|EBA01486.1| transcription elongation factor GreB [Marinobacter sp. ELB17] Length = 157 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+D +QQEL + ERP + + ++ A GD SENA+YQ K+ + Sbjct: 1 MKTNLITREGYDLLQQELDQLWRHERPEVTRKVTWAAGLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L +V+ S ++ FGA +SL++++ ++IVG E ++ S Sbjct: 61 RVRYLRKRFEELKVVAYSPEQEGKVFFGAWISLLDEDD-KPLTFRIVGPDEIYGRNDYAS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +P+ RA + KE+GD + V P GEKT+ I + + Sbjct: 120 VDAPLVRACLKKEVGDEVVVILPAGEKTWLIETIRY 155 >gi|261367899|ref|ZP_05980782.1| transcription elongation factor GreA [Subdoligranulum variabile DSM 15176] gi|282570711|gb|EFB76246.1| transcription elongation factor GreA [Subdoligranulum variabile DSM 15176] Length = 162 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ VT +G+ K++Q+L + +R + I AR YGDLSENAEY AAKE Q + E Sbjct: 1 MAKEVVVTREGYKKLEQDLNELRTVKRKEVADKIKVARGYGDLSENAEYDAAKEEQAIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG 118 R+A+LE + A +ID S +S D ++ G V ++ + + + Y I G EAD+ Sbjct: 61 ARIADLEATLKVARIIDDSELSNDTVSIGMRVKILAEGDDPDEAEEYDITGSTEADMNLN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +S SP+ ALIG + GD + V P G Y++L V Sbjct: 121 RISDESPVGAALIGHKAGDEVDVTLPNGSIIVYKVLAVS 159 >gi|104774331|ref|YP_619311.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423412|emb|CAI98285.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325126126|gb|ADY85456.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 162 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ + + A ++D + + D ++ G TV++ E + + Y+IVG ++D G Sbjct: 61 EERINAISEQLKYAVIVDTAAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 VS SPI +AL+G + G+ + +N +Y+++ Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154 >gi|154249834|ref|YP_001410659.1| transcription elongation factor GreA [Fervidobacterium nodosum Rt17-B1] gi|154153770|gb|ABS61002.1| transcription elongation factor GreA [Fervidobacterium nodosum Rt17-B1] Length = 156 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+ +T +G++ +++EL +++ I + I AR GDLSEN+EYQ AK Q Sbjct: 1 MEKVKLTKEGYELLKKELDELKRQLMFEIPERIKAARELGDLSENSEYQEAKNEQGRIAS 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE ++ AE+I ++ S + G V L ++G++ Q+V QEAD+ + +S Sbjct: 61 RINELEQMLMNAEIITEASNS-STVNLGDWVILKNLDTGEEMKIQLVNPQEADIFANKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 I SP+ R + G + G + + AP G Y+++++ Sbjct: 120 IESPLGRGVNGAKKGQTVKIKAPKGIVKYQVIEI 153 >gi|261400370|ref|ZP_05986495.1| transcription elongation factor GreB [Neisseria lactamica ATCC 23970] gi|269209803|gb|EEZ76258.1| transcription elongation factor GreB [Neisseria lactamica ATCC 23970] Length = 163 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|317055778|ref|YP_004104245.1| transcription elongation factor GreA [Ruminococcus albus 7] gi|315448047|gb|ADU21611.1| transcription elongation factor GreA [Ruminococcus albus 7] Length = 158 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 88/150 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ G++K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL Sbjct: 7 VSKAGYNKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I+ A V+D +S + G+ V L + + + QIVG E+D +G +S SPI Sbjct: 67 EILISNATVVDDDEISVHEVGVGSYVKLKDLEFDEIETLQIVGSTESDPDNGKISDESPI 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A + ++GDI V AP G +E+L++ Sbjct: 127 GKAALHMKVGDIFEVEAPAGMIKFEVLEIT 156 >gi|253580948|ref|ZP_04858210.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847790|gb|EES75758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 160 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 86/154 (55%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNLLTYAGLKKLEEELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G V + + + +IVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVHDFEFEEDIELKIVGSTEANSLEGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG GD++ V P G Y++L++ Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPAGIMKYKVLEIQ 157 >gi|225024039|ref|ZP_03713231.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC 23834] gi|224943064|gb|EEG24273.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC 23834] Length = 163 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K Sbjct: 1 MSNTTPNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMRE 60 Query: 59 NEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + R+ L + A+V+D T D+I FGATV L+ + +G+++ +IVG E D Sbjct: 61 IDRRIRFLTKRLEAAQVVDPETREATDQIFFGATVELL-RGNGEEQTVRIVGVDEIDTAR 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S +SP+ARAL+ GD I + P G + E+L V ++ Sbjct: 120 HKISWTSPLARALLKAREGDEIVFHGPEGREEIEVLSVAYV 160 >gi|169829310|ref|YP_001699468.1| transcription elongation factor GreA [Lysinibacillus sphaericus C3-41] gi|168993798|gb|ACA41338.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Lysinibacillus sphaericus C3-41] Length = 154 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 4/154 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ L Sbjct: 1 MTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRISTL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSGLVSI 122 +++I A +I ++ G TV+ VE +G ++++Y IVG EAD +S Sbjct: 61 KSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTEEESYTIVGSAEADPMEFRISN 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+ L+G+ G+ ++V PGGE +I+ + Sbjct: 121 ESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 154 >gi|91791609|ref|YP_561260.1| transcription elongation factor GreB [Shewanella denitrificans OS217] gi|91713611|gb|ABE53537.1| transcription elongation factor GreB [Shewanella denitrificans OS217] Length = 166 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K+ EL + +E RP I K ++ A + GD SENA+Y+ K L +GR+ L Sbjct: 12 ITAEGLAKLTHELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVRFL 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISSP 125 I +V+ + ++ FGA V + + G KK ++IVG E G +SI SP Sbjct: 72 RKRIEALKVVPYAAEQEGKVFFGAWVEIEN-DEGVKKRFRIVGPDEIYGDAKGYISIDSP 130 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ KE+ D SV P GE+ + I ++ + Sbjct: 131 MARALLKKEVDDDASVLTPTGEQFWYINKIFY 162 >gi|227498561|ref|ZP_03928705.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21] gi|226904017|gb|EEH89935.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21] Length = 173 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q Sbjct: 1 MAEQETILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE +I A+VI S ++ ++ G+ V++ + + +++ Y +VG EAD + Sbjct: 61 EGRILTLEKMIRNAKVIKDSEINKKVVSLGSQVTIKDMETEEEEEYTVVGTTEADPMADP 120 Query: 120 --VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ +A++G+++G + V P GE +Y+I+ + Sbjct: 121 PRISNESPVGKAILGQKVGSVCKVPTPAGELSYKIVSI 158 >gi|153813031|ref|ZP_01965699.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174] gi|149830833|gb|EDM85923.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174] Length = 160 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 83/154 (53%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNLLTYAGLKKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I G V + + + +IVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKINVGCKVKVHDYEFDEDMELKIVGSTEANSLEGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG GD++ V P G Y++L++ Sbjct: 124 ESPVGKALIGAHTGDVVDVEMPMGIMKYKVLEIQ 157 >gi|121603719|ref|YP_981048.1| transcription elongation factor GreB [Polaromonas naphthalenivorans CJ2] gi|120592688|gb|ABM36127.1| transcription elongation factor GreB [Polaromonas naphthalenivorans CJ2] Length = 183 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+++++ EL ERP+++ + A + GD SEN +Y K+ + R+ Sbjct: 27 KNYITPQGYNRLRVELLDLIDSERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AE+ + G D++ FGATV+ + + G ++ I+G EA G +S Sbjct: 87 RFLTKRLEIAEISNPCVHHGNDQVFFGATVTYGD-DEGLERTVTILGVDEAISAMGQISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A AL+ +GD +++ P G + E+L+V + Sbjct: 146 ISPVASALLKARVGDEVTLVTPQGTQLLEVLKVDY 180 >gi|332295594|ref|YP_004437517.1| transcription elongation factor GreA [Thermodesulfobium narugense DSM 14796] gi|332178697|gb|AEE14386.1| transcription elongation factor GreA [Thermodesulfobium narugense DSM 14796] Length = 159 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + I +T +G+D+++ EL + + + I + I EA+ + + N EY+ AK Q + Sbjct: 1 MKEIINLTQEGYDRLKNELEYLRDVKLKEISERIQEAKDFAEDFGNLEYEEAKSEQAMVL 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE ++ A +ID + R+ G V + + N K Y I+ EAD +G + Sbjct: 61 ARVNELEAQLSNARIIDKDKIEISRVGIGCKVVVKDLNKKTIKEYTILEPIEADPVNGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S SP+ +AL GK++GD ++V+ PGG +++ + Sbjct: 121 SFQSPVGKALFGKQVGDEVTVHTPGGQTIKLKVVSIE 157 >gi|229496616|ref|ZP_04390330.1| transcription elongation factor GreA [Porphyromonas endodontalis ATCC 35406] gi|229316513|gb|EEN82432.1| transcription elongation factor GreA [Porphyromonas endodontalis ATCC 35406] Length = 156 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T GFD++ E+ ++EERP I +AI+EAR GDLSENAEY AA+E Q L E Sbjct: 1 MEYHYMTQDGFDRLMDEISRLEREERPAIAQAIAEARDKGDLSENAEYDAAREAQGLLEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++++L+ +ID ST+ ++ V + + Y IV + +A+ + +S Sbjct: 61 KISQLKTQAANTRIIDESTIDTSKVQLLTKVKVKRLDDNSIIEYTIVPEIDANFKERKLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++PIAR LIGK++G+I V P G +EIL++ Sbjct: 121 VTAPIARGLIGKKVGEIAEVQVPIGLLRFEILEIS 155 >gi|320528944|ref|ZP_08030036.1| transcription elongation factor GreA [Selenomonas artemidis F0399] gi|320138574|gb|EFW30464.1| transcription elongation factor GreA [Selenomonas artemidis F0399] Length = 150 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + EL Sbjct: 2 LTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEIQEL 61 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN I +++I G + G+ V++ + + + + IVG EAD G +S SP+ Sbjct: 62 ENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNESPL 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 AL+G+++G +I+V+AP G Y+I+ + Sbjct: 120 GMALLGQKIGKVINVSAPAGMIRYKIVDIK 149 >gi|315286030|gb|EFU45468.1| transcription elongation factor GreB [Escherichia coli MS 110-3] gi|324014609|gb|EGB83828.1| transcription elongation factor GreB [Escherichia coli MS 60-1] Length = 154 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + +++D S ++ FGA V + + G ++IVG E + +SI Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132 Query: 123 SSPIARALIGKELGDIISVNAP 144 SP+ARAL+ KE+GD+ VN P Sbjct: 133 DSPMARALLKKEVGDLAVVNTP 154 >gi|326792442|ref|YP_004310263.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] gi|326543206|gb|ADZ85065.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] Length = 158 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K + +T +G K++ EL + R + + + EARA GDLSENAEY AAKE Q Sbjct: 1 MSSKSVLLTYEGIKKLEAELENLKTTRRNDVAEKLKEARAQGDLSENAEYDAAKEEQAEI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE ++ A VI+ + + + G TV L + ++ +Y IVG EAD +G Sbjct: 61 EVRIVELETMLKNAVVIEAEEGAVEIVKPGYTVRLYDHTFEEEVDYLIVGSTEADPVNGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+ + +GDI+ V G YEIL + Sbjct: 121 ISNESPVGAALMNRRVGDIVEVETSEGVDKYEILGIT 157 >gi|293115788|ref|ZP_05793017.2| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] gi|292808216|gb|EFF67421.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] Length = 165 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G K++ EL+ + R + + I EAR GDLSENAEY AAK+ Q Sbjct: 8 MAEKKNLMTYEGLKKLEDELQDLKVNRRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 67 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+E I+ AEV D I G+TV++ + ++ +++VG EA Sbjct: 68 EARIEEIEKILKNAEVAD-DEFGAGVINLGSTVTVYDCEFDEELVFKLVGSTEAKSLENK 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S +P+ +ALIGK GD + V P G Y+++ V Sbjct: 127 ISNEAPLGKALIGKVAGDEVEVETPSGIMKYKVINVT 163 >gi|156740036|ref|YP_001430165.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM 13941] gi|229485906|sp|A7NFC5|GREA_ROSCS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|156231364|gb|ABU56147.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM 13941] Length = 157 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ E+++I+ RA++ID S + G+ V++ +++ + IVG EA G Sbjct: 61 EGRIREIKSILARAQIIDEENGSNHEVRIGSRVTVRIDGEHEEETWTIVGSTEAKPSEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK ++V P G IL + Sbjct: 121 ISNESPIGAALLGKRPSQQVTVETPSGTMKLTILNIQ 157 >gi|50085861|ref|YP_047371.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. ADP1] gi|49531837|emb|CAG69549.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. ADP1] Length = 157 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + Sbjct: 1 MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + A ++ S + FGA V L + G+ ++IVGD+E + +S Sbjct: 61 RIRYLTKLFEVAHKVEYSPEQDGKAYFGAWVELEN-DEGEIIKFRIVGDEEIYGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIA+A +GK + D I V P G+K + I Q+ + Sbjct: 120 LQSPIAKACLGKSVDDEIQVQTPTGKKIWYICQINY 155 >gi|283795848|ref|ZP_06345001.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|291076479|gb|EFE13843.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|295091062|emb|CBK77169.1| transcription elongation factor GreA [Clostridium cf. saccharolyticum K10] Length = 160 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKHILTYTGLKQYEDELQDLKVNKRQEIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ AEV+ + ++I G V L++ ++ ++IVG EA+ Sbjct: 61 EARIEQLEKLLKNAEVVVEEEIDLEKINIGCRVKLLDVEEDEEMEFKIVGSTEANSLQNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK++GD++ V G Y++L++ Sbjct: 121 ISNESPVGHALLGKKVGDVVDVETQAGMIQYKVLEIQ 157 >gi|309378808|emb|CBX22634.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 163 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V ++ Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYV 160 >gi|114561422|ref|YP_748935.1| transcription elongation factor GreB [Shewanella frigidimarina NCIMB 400] gi|114332715|gb|ABI70097.1| transcription elongation factor GreB [Shewanella frigidimarina NCIMB 400] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G++K++ E + +E+RP + K ++ A GD SENA+Y K L + Sbjct: 1 MKTKLITLEGYNKLRIEHDYLWKEQRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L ++ +++ + ++ FGATV + ++GD K ++IVG +E D + + Sbjct: 61 RVRYLRKLLPELKIVYYAPEQEGKVFFGATVEIEN-DAGDIKTFKIVGPEEIYDERKDYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D V+ P G+KT+ I ++ + Sbjct: 120 SIDSPMARALLKKQVDDEAVVSTPQGDKTWYINKISY 156 >gi|89095170|ref|ZP_01168094.1| transcription elongation factor GreB [Oceanospirillum sp. MED92] gi|89080528|gb|EAR59776.1| transcription elongation factor GreB [Oceanospirillum sp. MED92] Length = 169 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T++G+ ++ EL++ + +RP + +++ EA A GD SENAEY K+ + R+ Sbjct: 14 YITAEGYKRLNDELKYLWKVKRPEVTQSVKEAAAQGDRSENAEYIYGKKQLREIDRRVRY 73 Query: 66 LENIITRAEVID--ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + V+D + D + FGA V+L+++ +K ++IVG E ++ +S+ Sbjct: 74 LSKRLEDMVVVDRAPTPDKQDTVFFGAWVTLLDEE-ELEKRFRIVGPDEIGDEADYISVD 132 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+AR ++ K+LGD + + P G E YEIL++ + Sbjct: 133 SPLARLILKKQLGDEVCLEKPDGSEAWYEILRIEY 167 >gi|261380528|ref|ZP_05985101.1| transcription elongation factor GreB [Neisseria subflava NJ9703] gi|284796784|gb|EFC52131.1| transcription elongation factor GreB [Neisseria subflava NJ9703] Length = 163 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 74/155 (47%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + A V+D F + + + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR+LI GD + +N P G + EIL V +I Sbjct: 126 SPLARSLIKAREGDEVVLNTPEGREVIEILSVEYI 160 >gi|226324188|ref|ZP_03799706.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758] gi|225207737|gb|EEG90091.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758] Length = 160 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 89/154 (57%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 3 AKKTLLTYTGLKKLEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + D I G TV + +K ++ +Q+VG EA+ G +S Sbjct: 63 RIEELEKILKNAEVVVEDDVDLDTINIGCTVDVYDKEFEEEIVFQLVGSTEANSLEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ +ALIGK++GD+++V G YE+L++ Sbjct: 123 NESPVGKALIGKKVGDVVAVETQAGVIEYEVLKI 156 >gi|86159099|ref|YP_465884.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85775610|gb|ABC82447.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 163 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF ++ E E+RPRI+ + A A GD SENAEY K+ + R+ Sbjct: 7 YITPEGFRRLAAEHTRIWTEQRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ R FGA V++ E+ G ++ Y++VG E DV +GL+S+ +P Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRYRLVGPDEFDVSAGLISVDAP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK GD++ V+ P G + +++V W Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVEFTVVEVSW 157 >gi|332686024|ref|YP_004455798.1| transcription elongation factor GreA [Melissococcus plutonius ATCC 35311] gi|332370033|dbj|BAK20989.1| transcription elongation factor GreA [Melissococcus plutonius ATCC 35311] Length = 157 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVFPMTQEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LEN+I A++ID + D I+ G TV E G+++ Y IVG EAD SG Sbjct: 61 EGRITTLENMIRFAQIIDNDGVDEDEISIGKTVVFTELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK LG+ + + PGG+ ++++V Sbjct: 121 ISNDSPIAQALIGKHLGEEVIIETPGGDMKVKVIRVS 157 >gi|254480189|ref|ZP_05093437.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2148] gi|214039751|gb|EEB80410.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2148] Length = 165 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++ EL + ERP I + EA GD SEN +Y K + R+ Sbjct: 14 YITPEGEKALRDELHQLWKVERPVITNTVHEAAKNGDRSENGDYIYGKRRLREIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + EV++ S +I FGA V+L E G + ++IVG E ++++G +S+ SP Sbjct: 74 LNKRLDELEVVERSPDDTSKIRFGAWVTL-ETEDGQEHRWRIVGPDEFELKTGKLSMDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AR+++GK L D + V +P GE+ Y ++ + + Sbjct: 133 MARSMLGKGLDDEVVVQSPSGEQVYYVVGIEY 164 >gi|90020882|ref|YP_526709.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] gi|89950482|gb|ABD80497.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40] Length = 157 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G ++ EL + ERP + K +S A + GD SENA+YQ K+ + Sbjct: 1 MRTPLITPQGLKDLKAELDELWRVERPEVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I +V++ ++ FGA V + + G+ ++IVG E + +S Sbjct: 61 RVRYLRKCIENLKVVEYHPDQEGKVFFGAWVEVEN-DEGEVLTFRIVGYDEIFNRKNYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I +P+ARAL+ KE+ D V G+ T+ I + + Sbjct: 120 IDAPMARALLKKEVDDEAVVRTEAGKTTWYINAIRY 155 >gi|313205435|ref|YP_004044092.1| transcription elongation factor grea [Paludibacter propionicigenes WB4] gi|312444751|gb|ADQ81107.1| transcription elongation factor GreA [Paludibacter propionicigenes WB4] Length = 151 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 95/150 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ K+ +EL + +RP I K I EAR GDLSENAEY AAKE Q + E R++ L Sbjct: 1 MTAEGYRKLVEELNELESVQRPAISKQIGEARDKGDLSENAEYDAAKEAQGMLEMRISNL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +++I A +ID S ++ + + V + + +Y IV + EA+ + G +S+++PI Sbjct: 61 KDMIASARMIDESKINTNEVQILTRVKIKNTKTNQLMSYMIVSESEANFKEGKLSVTTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+ L+GK++G+ +V+ P G +E++++ Sbjct: 121 AKGLLGKKVGERATVSVPSGMLEFEVMEIS 150 >gi|221633065|ref|YP_002522290.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] gi|254799575|sp|B9L0L0|GREA_THERP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|221157000|gb|ACM06127.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] Length = 156 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++IP+T +G + ++QE + + RP I + I EAR +GD+ ENA Y AAK Q EGR Sbjct: 4 ERIPITREGLEALRQEYEYLVKHRRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGR 63 Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + E+E ++ R E+I+ + + G+TV++ + G+ + Y IVG EA +G +S Sbjct: 64 IREIEELLKRVELIEQPTDGDRSVVRVGSTVTI--EIDGEIETYTIVGAIEAKPSAGRIS 121 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G G+I+ + P G I++V Sbjct: 122 NESPVGRALLGHRAGEIVPIETPNGTLMARIIEVQ 156 >gi|333029629|ref|ZP_08457690.1| transcription elongation factor GreA [Bacteroides coprosuis DSM 18011] gi|332740226|gb|EGJ70708.1| transcription elongation factor GreA [Bacteroides coprosuis DSM 18011] Length = 154 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ G++ + +ELR + +RP I + I+EAR GDLSENAEY AAKE Q + E ++ Sbjct: 3 YMSESGYNDLMEELRELETVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGMLEMKINR 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ II A +ID S +S D + TV L +G K Y IV + EAD++ G +++S+P Sbjct: 63 LKLIIADARIIDESKLSTDSVQILNTVELKNVKNGKKMKYTIVSESEADLRKGKIAVSTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD+ + P G T E++ + Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMITLEVVDIS 153 >gi|262369479|ref|ZP_06062807.1| transcription elongation factor and transcript cleavage [Acinetobacter johnsonii SH046] gi|262315547|gb|EEY96586.1| transcription elongation factor and transcript cleavage [Acinetobacter johnsonii SH046] Length = 157 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + Sbjct: 1 MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + A ++ S + FGA V L + G+ ++IVGD E + +S Sbjct: 61 RIRYLTKLFEVAYKVEYSPEQDGKAYFGAWVELEN-DEGEIIKFRIVGDDEIYGRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SPIA+A +GK + D I V+ P G+K + I ++ + Sbjct: 120 LQSPIAKACLGKSVDDEIQVHTPTGKKNWYIAKIFY 155 >gi|73666717|ref|YP_302733.1| transcription elongation factor GreA [Ehrlichia canis str. Jake] gi|72393858|gb|AAZ68135.1| transcription elongation factor GreA [Ehrlichia canis str. Jake] Length = 170 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 74/163 (45%), Positives = 114/163 (69%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 9 MNERFPITKSGFEKLELE-LESLKHERPKIIKSISEARELGDLSENAEYHAARERQGLIE 67 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ Y+IVG+ E D+ Sbjct: 68 SKIMELESKRSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYKIVGEYEVDIS 127 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I Sbjct: 128 KQMISIKSPLVLSLLGKKEGDVVEVRTPKGDYKIYKIIKIEFI 170 >gi|295093556|emb|CBK82647.1| transcription elongation factor GreA [Coprococcus sp. ART55/1] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKNVVTYSGLKKIEEELQNLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ EV+D + + G V + + +K Y IVG +AD+ + Sbjct: 61 EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVVVYDYEFDEKIEYDIVGSSQADIMNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL G ++G+ + V AP GE Y +L + Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157 >gi|312898247|ref|ZP_07757638.1| transcription elongation factor GreA [Megasphaera micronuciformis F0359] gi|310620744|gb|EFQ04313.1| transcription elongation factor GreA [Megasphaera micronuciformis F0359] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 4/157 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T+ G +K+++EL + R + + I EA A GDLSEN+EY AK Q E Sbjct: 1 MSNETLITADGLEKLKEELNELKSVRRIAVSQRIKEAIALGDLSENSEYDDAKNEQAFIE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELEN I A++I+ ST ++ G+ V L + + ++ Y +VG EAD + + Sbjct: 61 GRIVELENKIRTAKIIEESTDDVAKVRLGSKVILEDVETKERFEYTVVGTAEADPFNNRI 120 Query: 121 SISSPIARALIGKELGDI----ISVNAPGGEKTYEIL 153 S SP+ A++G+ + +SV AP GE Y+IL Sbjct: 121 SNESPVGAAILGQNVDKENPVIVSVKAPAGEVQYKIL 157 >gi|149911350|ref|ZP_01899970.1| transcription elongation factor GreB [Moritella sp. PE36] gi|149805590|gb|EDM65593.1| transcription elongation factor GreB [Moritella sp. PE36] Length = 161 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G++ + + L++ ++ERPR+ K +S A + GD S+NA+Y+ K L + Sbjct: 1 MAISNLITRVGWETLDKRLKFLWKQERPRVTKVVSWAASLGDRSDNADYKENKHLLRTID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + L + E++D S + FGA L + ++G +IVG E D + V Sbjct: 61 REIRFLVKRLEVLEIVDYSPQQDGTVYFGAYAELED-DNGTVIQCRIVGRDELDSKRNFV 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++ SP+A+ALIGK++ D V+ P G KT+ I ++ + Sbjct: 120 TVDSPMAKALIGKQVDDEAIVHTPAGSKTWYINKIQY 156 >gi|328952713|ref|YP_004370047.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM 11109] gi|328453037|gb|AEB08866.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM 11109] Length = 159 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 94/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K+ +T +G+ K+ +EL+ ++ RPRI++ + EA A G L +N +Y A+ Q + Sbjct: 1 MPKVILTQEGYRKLLRELKHLRRIVRPRILEDVMEAAADGRLEKNDQYWEARSRQVQVDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ L+ II ++EV+ S ++ ++ F V + + + + +V EADV+ G +S Sbjct: 61 QIHHLQEIIAQSEVLVGSNLTASQVRFNCRVKICNVITQEISIFHLVSSIEADVRQGHLS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SP+ +AL+GK++G+ I N PGG + Y++L++ Sbjct: 121 IESPLGQALLGKKVGERIGFNPPGGPRWYQVLEIQ 155 >gi|292670844|ref|ZP_06604270.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541] gi|292647465|gb|EFF65437.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541] Length = 156 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K + +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q Sbjct: 1 MTEKKVMLTEDGYNKLVEKLDYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG + ELE I +++I G + G+ V + + +++ + IVG EAD G Sbjct: 61 EGEIQELETKIRNSDII--KAGDGKSVTMGSRVKVKDLEFDEEETFLIVGSTEADPDEGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+G+++ +I VNAP G Y+I+ + Sbjct: 119 ISNESPLGMALLGQKINRVIKVNAPAGIIQYKIIDIK 155 >gi|237746721|ref|ZP_04577201.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] gi|229378072|gb|EEO28163.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] Length = 184 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G K++ EL ERP++++ +S A + GD SEN +Y K + R+ Sbjct: 27 KNYITPAGLKKLKDELLELIDTERPQVVQTVSWAASNGDRSENGDYIYGKRRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AE D S G D+I FGATV+ E+ +G++ IVG E D G +S Sbjct: 87 RFLIKRIEAAEEFDPSVHYGNDQIFFGATVTY-ERQNGEENTVTIVGIDEFDPLQGKISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+AR LI GD ++++ P G + IL+V + Sbjct: 146 ISPMARTLIKAHEGDTVTLHTPAGIEELVILEVSY 180 >gi|261377902|ref|ZP_05982475.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685] gi|269145757|gb|EEZ72175.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685] Length = 163 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ F ATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|329769158|ref|ZP_08260578.1| transcription elongation factor greA [Gemella sanguinis M325] gi|328839377|gb|EGF88955.1| transcription elongation factor greA [Gemella sanguinis M325] Length = 162 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 4/156 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +G+D++ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ Sbjct: 8 EYQMTQEGYDQLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEYKISNE 126 Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156 SP+A+AL+GKE+GD+ V+ P G +IL+V Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMEIKILEVE 162 >gi|298369204|ref|ZP_06980522.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014 str. F0314] gi|298283207|gb|EFI24694.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014 str. F0314] Length = 163 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPVGWQALKDELYRLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D +++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPEQREPTEQVFFGATVCLL-RGDGSEQTVRIVGADEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNGPEGREEIEILSVEYI 160 >gi|320528378|ref|ZP_08029540.1| putative transcription elongation factor GreA [Solobacterium moorei F0204] gi|320131292|gb|EFW23860.1| putative transcription elongation factor GreA [Solobacterium moorei F0204] Length = 158 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G K+Q E R + + ++EARA GDLSENA+Y AA++ Q E R Sbjct: 5 NKTYLTEEGLKKLQDEYYNLVHVVREEVKQELAEARAQGDLSENADYDAARDEQAKVEAR 64 Query: 63 MAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +A LE ++ E+ID + G++V+L ++ ++ Y IVG E+D +G +S Sbjct: 65 IATLEYMLRNYELIDTKKAGKKSAVHIGSSVTLFFNDTKEEVTYNIVGSTESDPLNGRLS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+A+A++ ++GD+ V T EI+++ Sbjct: 125 NETPLAQAILDHKVGDVCEVRV-ANPYTVEIIKIK 158 >gi|294675384|ref|YP_003576000.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] gi|294473225|gb|ADE82614.1| transcription elongation factor GreA family protein [Prevotella ruminicola 23] Length = 155 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDKLIAELQRLEGVERPKASAAIAEAREKGDLSENSEYDAAKEAQAHLEDKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A+VID S +S D + + V + + K Y IV + EA+++ G +SI +P Sbjct: 63 LKMTIAEAKVIDTSRLSTDSVQILSKVEMTNLTNKAKMTYTIVSESEANLREGKISIQTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ ++GD + V P G I ++ Sbjct: 123 IAQGLLNHKVGDEVEVKIPRGTIKLRIDKIT 153 >gi|291460291|ref|ZP_06599681.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417046|gb|EFE90765.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] Length = 162 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 4/158 (2%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T G +K + EL + R I I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEGKKNLLTRAGLNKYEAELHDLKVNRRQEIAGKIKEAREQGDLSENAEYDAAKDEQRE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +LE ++ AEV+D + I G V L++K ++ Y IVG EA+ G Sbjct: 61 IEERIVQLELLLKNAEVVDDTEE--GSINIGCHVKLLDKEFDEEVEYTIVGSTEANSLQG 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+ GD + V G + +L V Sbjct: 119 KISNESPVGKALLHHREGDTVEVETQNGVLQFTVLSVE 156 >gi|260549248|ref|ZP_05823468.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. RUH2624] gi|260407654|gb|EEX01127.1| transcription elongation factor and transcript cleavage [Acinetobacter sp. RUH2624] Length = 164 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D + ++ FGA V + + G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYAPEQEGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + V+ P G+K + I + + Sbjct: 120 SIESPMARALLSKQVDDEVEVHTPLGKKLWYINAIRY 156 >gi|108758975|ref|YP_631387.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622] gi|108462855|gb|ABF88040.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622] Length = 176 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G +++ +EL EERP++ +S A A GD SENAEY K+ + R+ Sbjct: 24 YLTRAGAERLHRELVHLLNEERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRLRF 83 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ + A ++ + R+ FGATVSL +++ G + YQIVG E D G +S+ S Sbjct: 84 LQKRLDTATIVTPAEQTDRSRVFFGATVSLEDEDGG-RSTYQIVGSDEIDASGGRISVES 142 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ RAL+ K +GD + V P G+ ++ + + Sbjct: 143 PMGRALLRKAVGDSVEVRRPRGDIELTVVDIRY 175 >gi|291547775|emb|CBL20883.1| transcription elongation factor GreA [Ruminococcus sp. SR1/5] Length = 161 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 83/155 (53%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKNLLTYAGLRKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I+ AEV+ + DRI+ G V + + + +IVG EA+ G +S Sbjct: 64 RIEEIEKILKNAEVVVEDEVDLDRISVGCKVKVHDYEFEEDMELKIVGSTEANSLEGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG DI+ V P G Y++L++ Sbjct: 124 NESPVGKALIGAHTNDIVEVEMPSGIMKYKVLEIQ 158 >gi|225016228|ref|ZP_03705420.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum DSM 5476] gi|224950986|gb|EEG32195.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum DSM 5476] Length = 163 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 86/154 (55%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T +G K+++EL + +R + I A ++GDLSEN+EY AK Q + E R Sbjct: 9 KQTILTGEGLSKLEEELEELKTVKRQEVAAKIKVALSFGDLSENSEYDEAKNEQAMVEAR 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E ++ V+D S + D ++ G+ V L + + Y IVG EAD G +S Sbjct: 69 IAQVEAMLKNVHVLDDSDLPTDIVSIGSKVLLKDIEFDEDVEYYIVGSTEADPSEGKISD 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G +GD + V P G +E+L++ Sbjct: 129 ESPVGKALLGHRVGDRVEVEVPSGMIEFEVLEIS 162 >gi|271502327|ref|YP_003335353.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] gi|270345882|gb|ACZ78647.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] Length = 160 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+D S ++ FGA V + + K+ ++IVG E + +SI +P+ Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENEEGEVKR-FRIVGPDEIYGRKDYISIDAPM 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K + + V P G + + + ++ + Sbjct: 125 ARALLKKAVDEEAVVTTPTGPRVWYVNKIDY 155 >gi|258646084|ref|ZP_05733553.1| transcription elongation factor GreA [Dialister invisus DSM 15470] gi|260403459|gb|EEW97006.1| transcription elongation factor GreA [Dialister invisus DSM 15470] Length = 160 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +K+Q+EL + + R + + + EA A GDLSEN+EY AK Q+ EGR+ EL Sbjct: 9 VTKEGLEKLQKELDELRTKTRGEVAQRLKEAIAMGDLSENSEYDDAKNQQSFVEGRIKEL 68 Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E I AE+ID R+ G TV++ ++ +IVG E+D G +S SP Sbjct: 69 EQQIRTAEIIDSGKKGRKSRVDVGMTVTIEALEDHVEETVKIVGSTESDPFEGKISNESP 128 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RAL+G + GDI+ AP G Y+++++ Sbjct: 129 VGRALMGAKAGDIVEAEAPSGVVKYKVIKIK 159 >gi|326318293|ref|YP_004235965.1| transcription elongation factor GreB [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375129|gb|ADX47398.1| transcription elongation factor GreB [Acidovorax avenae subsp. avenae ATCC 19860] Length = 189 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ Sbjct: 30 KNYMTPAGYARLRSELLELMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 89 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS Sbjct: 90 RFLTKRLDMAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSSQSQVSW 148 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ GD + + PGG +T EIL+V + Sbjct: 149 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 183 >gi|299144545|ref|ZP_07037624.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517633|gb|EFI41373.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 158 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K I T++G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q Sbjct: 1 MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ A+VI + ++ D + G+TV + + + G+++ + IVG EAD G Sbjct: 61 EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ LIG ++G++ V P G YE++ + Sbjct: 121 ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGIS 157 >gi|126642687|ref|YP_001085671.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 17978] gi|169794997|ref|YP_001712790.1| transcription elongation factor and transcript cleavage [Acinetobacter baumannii AYE] gi|184159217|ref|YP_001847556.1| transcription elongation factor [Acinetobacter baumannii ACICU] gi|213158338|ref|YP_002320389.1| transcription elongation factor GreB [Acinetobacter baumannii AB0057] gi|215482547|ref|YP_002324737.1| transcription elongation factor GreB [Acinetobacter baumannii AB307-0294] gi|260556477|ref|ZP_05828695.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|301346025|ref|ZP_07226766.1| transcription elongation factor GreB [Acinetobacter baumannii AB056] gi|301511853|ref|ZP_07237090.1| transcription elongation factor GreB [Acinetobacter baumannii AB058] gi|301594320|ref|ZP_07239328.1| transcription elongation factor GreB [Acinetobacter baumannii AB059] gi|332855917|ref|ZP_08436091.1| transcription elongation factor GreB [Acinetobacter baumannii 6013150] gi|332867120|ref|ZP_08437399.1| transcription elongation factor GreB [Acinetobacter baumannii 6013113] gi|332876188|ref|ZP_08443967.1| transcription elongation factor GreB [Acinetobacter baumannii 6014059] gi|126388571|gb|ABO13069.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 17978] gi|169147924|emb|CAM85787.1| transcription elongation factor and transcript cleavage [Acinetobacter baumannii AYE] gi|183210811|gb|ACC58209.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|213057498|gb|ACJ42400.1| transcription elongation factor GreB [Acinetobacter baumannii AB0057] gi|213986627|gb|ACJ56926.1| transcription elongation factor GreB [Acinetobacter baumannii AB307-0294] gi|260409736|gb|EEX03036.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC 19606] gi|322509131|gb|ADX04585.1| Transcription elongation factor GreB [Acinetobacter baumannii 1656-2] gi|323519159|gb|ADX93540.1| transcription elongation factor [Acinetobacter baumannii TCDC-AB0715] gi|332727236|gb|EGJ58685.1| transcription elongation factor GreB [Acinetobacter baumannii 6013150] gi|332734193|gb|EGJ65323.1| transcription elongation factor GreB [Acinetobacter baumannii 6013113] gi|332735622|gb|EGJ66670.1| transcription elongation factor GreB [Acinetobacter baumannii 6014059] Length = 164 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120 R+ L + +++D S ++ FGA V + + G++K +IVG D+ D + Sbjct: 61 RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEE-GEQKTLRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D + V+ P G+K + I + + Sbjct: 120 SIESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156 >gi|149184390|ref|ZP_01862708.1| transcription elongation factor [Erythrobacter sp. SD-21] gi|148831710|gb|EDL50143.1| transcription elongation factor [Erythrobacter sp. SD-21] Length = 159 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G+ ++ +ERP I++ +S A GD SEN +Y ++ + + Sbjct: 7 PITPAGYAAMKARYDHLLGKERPEIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELGH 66 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VI S R FGATV+L +++ +K +VGD E D +G + SS Sbjct: 67 LARRMKAARVIVPSDQPDKSRAFFGATVTLADEDDN-EKTVTLVGDDEQDASAGRIGWSS 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL G +GD+ +V PGGE+ +EI+ + + Sbjct: 126 PLARALKGAGVGDLRTVRLPGGEREWEIVSIDY 158 >gi|116514426|ref|YP_813332.1| transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093741|gb|ABJ58894.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 162 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G Sbjct: 61 EERINAISEQLKYAVIVDTVAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 VS SPI +AL+G + G+ + +N +Y+++ Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154 >gi|329894420|ref|ZP_08270267.1| Transcription elongation factor GreB [gamma proteobacterium IMCC3088] gi|328923067|gb|EGG30391.1| Transcription elongation factor GreB [gamma proteobacterium IMCC3088] Length = 171 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G ++ EL + ERP++ A+ EA GD SEN +Y K+ + R+ Sbjct: 14 YITAAGAAALKSELDELWRVERPKVTDAVREAAKNGDRSENGDYIYGKKRLREIDSRVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +V+ + DRI FGA+V+L E+ G + IVG E D ++G +SI +P Sbjct: 74 LTKRLESLKVVSAAPSEPDRIFFGASVTL-EEEDGSLQTLHIVGADEIDPKTGKISIDAP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I+RAL+GK + D I AP G + ++ V + Sbjct: 133 ISRALLGKRIDDEIEYQAPAGRQVRYVIDVNY 164 >gi|301628310|ref|XP_002943300.1| PREDICTED: transcription elongation factor greB-like [Xenopus (Silurana) tropicalis] Length = 154 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G + ++ EL + ERP+++ +S A GD SEN +Y K+ + R+ L Sbjct: 1 MTPAGLESLRSELNHLSRSERPKVVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 60 Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 I A+V+D + G +R+ FGATV+ + +++ +VG EAD++ +S SP Sbjct: 61 TKRIESAKVVDPAEQQGLERVFFGATVTYANQRD-EERTVTLVGVDEADMEQSKISWRSP 119 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL +GD + + P G + E++ + + Sbjct: 120 VARALFKAGIGDEVLLRTPAGTERLEVIAIAY 151 >gi|225572778|ref|ZP_03781533.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM 10507] gi|225039835|gb|EEG50081.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM 10507] Length = 160 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 88/154 (57%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G +++EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNLLTYAGLKNLEEELHDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + D+I+ G V L + ++ ++IVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKLYDYEYEEEIEFKIVGSTEANSLQGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG ++ D++ V P G Y++L++ Sbjct: 124 ESPVGKALIGAKVDDVVKVEMPAGMVEYKVLEIQ 157 >gi|329121808|ref|ZP_08250424.1| transcription elongation factor GreA [Dialister micraerophilus DSM 19965] gi|327468081|gb|EGF13569.1| transcription elongation factor GreA [Dialister micraerophilus DSM 19965] Length = 162 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EG Sbjct: 4 MQRTLVTREGLEKMQKELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I A +I G R+ +TV++ + + G ++ IVG E+D G +S Sbjct: 64 RILELETKIRTAVLI-SQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP RAL+G +LGDI+ V+AP G Y+I + Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156 >gi|302672112|ref|YP_003832072.1| transcription elongation factor GreA/GreB1 [Butyrivibrio proteoclasticus B316] gi|302396585|gb|ADL35490.1| transcription elongation factor GreA/GreB1 [Butyrivibrio proteoclasticus B316] Length = 161 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 84/154 (54%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T +G K + EL + +R + + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNILTYEGLKKYEDELHELKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE I+ AEV+ + ++I+ G V + + ++ Y+IVG EA+ G +S Sbjct: 64 IEALEKILKNAEVVVEEDVDLNKISIGCKVKIKDLEFDEELEYKIVGSSEANSLKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG + G +SV G Y++L + Sbjct: 124 ESPVGKALIGAKKGQTVSVETQAGVIKYKVLSIE 157 >gi|313892199|ref|ZP_07825792.1| transcription elongation factor GreA [Dialister microaerophilus UPII 345-E] gi|313119337|gb|EFR42536.1| transcription elongation factor GreA [Dialister microaerophilus UPII 345-E] Length = 162 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EG Sbjct: 4 MQRTLVTREGLEKMQRELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I A +I G R+ +TV++ + + G ++ IVG E+D G +S Sbjct: 64 RILELETKIRTAVLI-SQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP RAL+G +LGDI+ V+AP G Y+I + Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156 >gi|241888529|ref|ZP_04775837.1| transcription elongation factor GreA [Gemella haemolysans ATCC 10379] gi|241864796|gb|EER69170.1| transcription elongation factor GreA [Gemella haemolysans ATCC 10379] Length = 162 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 4/156 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ Sbjct: 8 EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E +I A +I++ S I G V+ E G + Y+IVG EA+ +S Sbjct: 68 LEMEQMIRYAVIIELDGKS-STIRLGNKVTYQELPDGLTETYKIVGSAEANPFEFKISNE 126 Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156 SP+A+AL+GKE+GD+ V+ P G +IL V Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162 >gi|226941107|ref|YP_002796181.1| transcription elongation factor GreB [Laribacter hongkongensis HLHK9] gi|226716034|gb|ACO75172.1| GreB [Laribacter hongkongensis HLHK9] Length = 185 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP + + ++ A GD SEN +Y K + R+ Sbjct: 28 KNYLTPAGWQRMKDELYRLVNHERPEVTQVVNWAAGNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D D++ FGATV ++ + G ++ IVG E D+ G +S Sbjct: 88 RFLTKRLEIAEVVDPERREATDQVFFGATVVML-RGDGSEQTVSIVGVDELDLSRGHISW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIAR L+ GD++ P GE+ EIL+V + Sbjct: 147 ISPIARTLLKAREGDVVWFRGPDGEEEIEILEVRY 181 >gi|291551193|emb|CBL27455.1| transcription elongation factor GreA [Ruminococcus torques L2-14] Length = 160 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 83/155 (53%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G I+ EL + +R + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKRLLTYAGLKAIEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEV+ + ++I G V + + ++ ++IVG EA+ G +S Sbjct: 64 RIEELEAILKNAEVVVEDEVDLNKINVGCAVKVYDITFDEEMEFKIVGSTEANSLEGKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++ D++ V G Y++L + Sbjct: 124 NESPVGHALIGKKINDVVDVETQAGVIQYKVLDIK 158 >gi|114328469|ref|YP_745626.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] gi|114316643|gb|ABI62703.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] Length = 169 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +T G ++ EL+ +EERP+I++ +S A GD SEN +Y K+ + R+ Sbjct: 13 FYMTPVGHAQMVAELKQLMREERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVR 72 Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + A VID +T DRI FGATV+ + + + IVG EAD+ G +S+ Sbjct: 73 FLTKRLENAVVIDPATQPHKDRIYFGATVTYINA-ADETVQVTIVGADEADMALGRISLL 131 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+AL+G GD ++V P + +IL V + Sbjct: 132 SPVAKALLGASKGDEVTVITPVKTEILDILDVDY 165 >gi|254804573|ref|YP_003082794.1| Transcription elongation factor [Neisseria meningitidis alpha14] gi|254668115|emb|CBA04682.1| Transcription elongation factor [Neisseria meningitidis alpha14] Length = 163 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPAGWQALKNELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A VID + D++ F ATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVIDPELREATDQVFFSATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|332995753|gb|AEF05808.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 159 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G+ ++ QE E+RP I K ++ A GD SENA+Y K L + Sbjct: 1 MKTKLITRAGYQRLVQEHDHLWFEKRPEITKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L ++ +++D S ++ FGA V + G+ K ++IVG +E D Q + Sbjct: 61 RVRYLRKLLPELKIVDYSAEQEGKVFFGAWVEIENYE-GEVKRFRIVGPEEIYDDQKKYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+GK++ + V P G K + I + + Sbjct: 120 SIDSPMARALLGKQIDEDFGVTTPDGFKLWYINSIKY 156 >gi|224826318|ref|ZP_03699420.1| transcription elongation factor GreB [Lutiella nitroferrum 2002] gi|224601419|gb|EEG07600.1| transcription elongation factor GreB [Lutiella nitroferrum 2002] Length = 185 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 78/156 (50%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G+ +++ EL ERP ++ ++ A + GD SEN +Y K + Sbjct: 26 ATKNYLTPQGWQRLKNELYHLVHRERPEMVNVVNWAASNGDRSENGDYLYGKRRLREIDR 85 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + AEV+D T F + L+ + G ++ +IVG E D+ G +S Sbjct: 86 RIRFLTKRLEIAEVVDPETRETTDQIFFSATVLILRGDGSEQLLRIVGVDEIDLPRGHIS 145 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIAR LI GD + P GE+T E+L+V + Sbjct: 146 WISPIARCLIKAREGDEVVFRGPDGEETIEVLEVRY 181 >gi|239503414|ref|ZP_04662724.1| transcription elongation factor GreB [Acinetobacter baumannii AB900] Length = 164 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D S ++ FGA V + + G +K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEE-GQQKTLRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ KE+ D + V+ P G+K + I + + Sbjct: 120 SIESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156 >gi|225075604|ref|ZP_03718803.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens NRL30031/H210] gi|224953026|gb|EEG34235.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens NRL30031/H210] Length = 163 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 74/155 (47%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + A V+D F + + + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR+LI GD + ++ P G + EIL V +I Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160 >gi|116332834|ref|YP_794361.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] gi|116098181|gb|ABJ63330.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] Length = 160 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T+ G+ +Q ++ + +RP I ++EARA+GDLSENAEY AAK E ++ Sbjct: 9 PITAAGYQDLQAKIAALEA-DRPEKIAILAEARAHGDLSENAEYSAAKRDLRHLESQLRF 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ S + D + G V++ + ++ YQ+VG QEAD+ +G ++ SP Sbjct: 68 YTKQLQYAKVVAPS--NSDVVDLGKWVTVTFLDDHEQATYQLVGTQEADLAAGKITRVSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+G GD ++++AP +I QV Sbjct: 126 LGKALLGHHPGDTVTISAPHANYRVKINQVQ 156 >gi|192360004|ref|YP_001981507.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107] gi|190686169|gb|ACE83847.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107] Length = 157 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GFD +Q+EL + ERP + K +S A + GD SENA+YQ K+ + Sbjct: 1 MRTPLITRQGFDDLQKELDELWRVERPDVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L + +V++ ++ FGA V + + G +++VG E + +S Sbjct: 61 RVRYLRKCLENLKVVEYRPEQEGKVFFGAWVEVEN-DEGKTLTFRVVGYDEIFNRKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARAL+ K + D V G T+ I + + Sbjct: 120 IDSPMARALLKKAVDDEAIVATEAGTVTWYINSIWY 155 >gi|330993418|ref|ZP_08317353.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1] gi|329759448|gb|EGG75957.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1] Length = 178 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++ EL ++ERP+I++ +S A GD SEN +YQ K + R+ Sbjct: 23 YVTPAGIAVMRAELNALLRDERPKIVEIVSWAAGNGDRSENGDYQYGKRRLREIDRRIRF 82 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L I A V+D + R+ FGATV+ V +++ I+G EAD+ +G +S+ S Sbjct: 83 LTKRIDNAVVVDPAAQPQRGRVFFGATVTYV-TERDEERTVTILGVDEADMAAGQISLVS 141 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ +GD + + P GE+ E+L + + Sbjct: 142 PVARALMRAAVGDEVRLATPRGEEMIEVLAISY 174 >gi|329767531|ref|ZP_08259054.1| transcription elongation factor greA [Gemella haemolysans M341] gi|328835865|gb|EGF85587.1| transcription elongation factor greA [Gemella haemolysans M341] Length = 162 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +G+DK+ +EL + ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ Sbjct: 8 EYQMTQEGYDKLVEELEYYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E +I A +I++ S I G TV+ E G + Y+IVG EA+ +S Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPDGLTETYKIVGSAEANPFEYKISNE 126 Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156 SP+A+AL+GKE+GD+ V+ P G +IL V Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162 >gi|257893581|ref|ZP_05673234.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,408] gi|260560508|ref|ZP_05832682.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium C68] gi|261209025|ref|ZP_05923430.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium TC 6] gi|289565163|ref|ZP_06445615.1| transcription elongation factor greA [Enterococcus faecium D344SRF] gi|293553245|ref|ZP_06673882.1| transcription elongation factor GreA [Enterococcus faecium E1039] gi|293563598|ref|ZP_06678044.1| transcription elongation factor GreA [Enterococcus faecium E1162] gi|293569322|ref|ZP_06680620.1| transcription elongation factor GreA [Enterococcus faecium E1071] gi|294615287|ref|ZP_06695163.1| transcription elongation factor GreA [Enterococcus faecium E1636] gi|294619052|ref|ZP_06698547.1| transcription elongation factor GreA [Enterococcus faecium E1679] gi|314939785|ref|ZP_07847005.1| transcription elongation factor GreA [Enterococcus faecium TX0133a04] gi|314942020|ref|ZP_07848880.1| transcription elongation factor GreA [Enterococcus faecium TX0133C] gi|314950014|ref|ZP_07853307.1| transcription elongation factor GreA [Enterococcus faecium TX0082] gi|314953536|ref|ZP_07856448.1| transcription elongation factor GreA [Enterococcus faecium TX0133A] gi|314992151|ref|ZP_07857598.1| transcription elongation factor GreA [Enterococcus faecium TX0133B] gi|314995129|ref|ZP_07860245.1| transcription elongation factor GreA [Enterococcus faecium TX0133a01] gi|257829960|gb|EEV56567.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,408] gi|260073510|gb|EEW61838.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium C68] gi|260077064|gb|EEW64786.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium TC 6] gi|289162984|gb|EFD10832.1| transcription elongation factor greA [Enterococcus faecium D344SRF] gi|291588028|gb|EFF19878.1| transcription elongation factor GreA [Enterococcus faecium E1071] gi|291591845|gb|EFF23478.1| transcription elongation factor GreA [Enterococcus faecium E1636] gi|291594713|gb|EFF26095.1| transcription elongation factor GreA [Enterococcus faecium E1679] gi|291602655|gb|EFF32870.1| transcription elongation factor GreA [Enterococcus faecium E1039] gi|291604448|gb|EFF33936.1| transcription elongation factor GreA [Enterococcus faecium E1162] gi|313590620|gb|EFR69465.1| transcription elongation factor GreA [Enterococcus faecium TX0133a01] gi|313593292|gb|EFR72137.1| transcription elongation factor GreA [Enterococcus faecium TX0133B] gi|313594459|gb|EFR73304.1| transcription elongation factor GreA [Enterococcus faecium TX0133A] gi|313599197|gb|EFR78042.1| transcription elongation factor GreA [Enterococcus faecium TX0133C] gi|313640925|gb|EFS05505.1| transcription elongation factor GreA [Enterococcus faecium TX0133a04] gi|313643661|gb|EFS08241.1| transcription elongation factor GreA [Enterococcus faecium TX0082] Length = 159 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157 >gi|312959745|ref|ZP_07774261.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6] gi|311285911|gb|EFQ64476.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6] Length = 157 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+ +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V++ ++ FGA V + + G+ K ++IVG E + + Sbjct: 60 RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIENEK-GETKRFRIVGYDEIYDRMDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARAL+ KE+ D V P GE + I + ++ Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPNGEVCWWITGIEYV 156 >gi|227890813|ref|ZP_04008618.1| transcription elongation factor [Lactobacillus salivarius ATCC 11741] gi|301301189|ref|ZP_07207345.1| transcription elongation factor GreA [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867222|gb|EEJ74643.1| transcription elongation factor [Lactobacillus salivarius ATCC 11741] gi|300851188|gb|EFK78916.1| transcription elongation factor GreA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 156 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA LIG +LGD++S++ PGG +I+ V Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMQVKIIDVK 156 >gi|261414657|ref|YP_003248340.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371113|gb|ACX73858.1| transcription elongation factor GreA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 151 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG-RMAEL 66 T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE + M +L Sbjct: 3 TQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPKL 62 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + RA+VI S D I FGAT++ + + YQ+V +EAD +G +S SPI Sbjct: 63 QDQLARAQVIAFDANS-DTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKISFKSPI 121 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 AL+GK+ GD + V P G+ +EI+ Sbjct: 122 GAALMGKKRGDTVEVVTPKGKNQFEIID 149 >gi|270291043|ref|ZP_06197266.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|304385319|ref|ZP_07367664.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] gi|270280439|gb|EFA26274.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|304328526|gb|EFL95747.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] Length = 154 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 3/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G+ KIQQE+ ++ RP +IKA+++ARA GDLSENAEY AAK EGR+ Sbjct: 6 VPMTKTGYQKIQQEIADLKKT-RPGLIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I +++++ + +I G+ V+L + Y+IVG EADV VS S Sbjct: 65 YLERQINYSKIVENT--DRTKIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSYQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ L D+++VNAP + EIL + Sbjct: 123 PLGAALLHHHLHDVVTVNAPDEQYQVEILAI 153 >gi|239905833|ref|YP_002952572.1| transcription elongation factor GreA [Desulfovibrio magneticus RS-1] gi|259647640|sp|C4XLU8|GREA_DESMR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|239795697|dbj|BAH74686.1| transcription elongation factor GreA [Desulfovibrio magneticus RS-1] Length = 164 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ IP++ +GF + + R ++ERP +I AI EAR GDL ENA Y+AA+E Q + E Sbjct: 1 MESIPISVEGFRR-LERELERLKKERPGVILAIKEAREEGDLRENAGYEAARERQGMLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +E+ ++R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S Sbjct: 60 RINYIESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ AL+GK +GD I V+AP G+ YEI+ + + Sbjct: 120 LLSPVGLALLGKFVGDEIVVDAPRGKINYEIVSIAF 155 >gi|313633191|gb|EFS00071.1| transcription elongation factor GreA [Listeria seeligeri FSL N1-067] Length = 133 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 79/131 (60%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +EN A++ID + Sbjct: 1 KRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENXXRNAQIIDAAESHNGL 60 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + G TV+ VE G+++ Y IVG EAD G +S SPIA+ L+G + G+ +++ P Sbjct: 61 VTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPA 120 Query: 146 GEKTYEILQVL 156 G+ +I ++ Sbjct: 121 GDMNVKIEKIT 131 >gi|256544717|ref|ZP_05472089.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC 51170] gi|256399606|gb|EEU13211.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC 51170] Length = 157 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ + ++ + K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q Sbjct: 1 MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++E++I A+ + ST + D ++ G+ V + ++ + Y+IVG E++ G Sbjct: 61 VESRIAKVEDMIRHAKTFEDST-NKDEVSVGSKVLIHDEEFDEDLEYKIVGTAESNPLEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+GK+ GD + V P G+ Y I ++ Sbjct: 120 FISNESPVGEALLGKKKGDKVEVVTPNGKCYYTIKEIR 157 >gi|212696520|ref|ZP_03304648.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM 7454] gi|325849676|ref|ZP_08170879.1| transcription elongation factor GreA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676456|gb|EEB36063.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM 7454] gi|325480017|gb|EGC83095.1| transcription elongation factor GreA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 157 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ + ++ + K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q Sbjct: 1 MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++E++I A+ + ST + D ++ G+ V + ++ + Y+IVG E++ G Sbjct: 61 VESRIAKVEDMIRHAKTFEDST-NKDEVSVGSKVLIHDEEFDEDFEYKIVGTAESNPLEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ ALIGK+ GD + V P G+ Y I ++ Sbjct: 120 FISNESPVGEALIGKKKGDKVEVATPNGKCYYTIKEIR 157 >gi|221135013|ref|ZP_03561316.1| transcription elongation factor [Glaciecola sp. HTCC2999] Length = 159 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G+ +++E + + ER I K ++ A GD S+NA+YQ K R+ L Sbjct: 8 ITPNGYRLLKEEEDYLWRVERHEITKKVTWAAGLGDRSDNADYQTNKRRLRQIHSRVRFL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + V+ S ++ FGA V+L E G+ K QIVG E + SI SP+ Sbjct: 68 RKRMEALTVVSPSPEQVGKVYFGAWVTL-ETEEGEVKKVQIVGSDEIYKHTSPCSIDSPL 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARA++GK + D VN P G Y IL + + Sbjct: 127 ARAMVGKTIDDEAVVNMPDGPIYYTILAIEY 157 >gi|268609180|ref|ZP_06142907.1| transcription elongation factor GreA [Ruminococcus flavefaciens FD-1] Length = 156 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K ++ + +DK+ EL +R + + + AR+YGDLSENAEY AK Q + E Sbjct: 1 MAVK-QMSRESYDKLVAELNDLIINKRKEVAERLKVARSYGDLSENAEYDEAKNEQAILE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AEL+ I AE++D S +S D I + +++ ++G + + IV A+V+ G + Sbjct: 60 AHIAELQYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +SPI +A + K +GD+ V+AP GE +E++++ Sbjct: 120 SDASPIGKAAMKKRVGDVFIVDAPAGELKFEVVEIS 155 >gi|241759774|ref|ZP_04757874.1| transcription elongation factor GreB [Neisseria flavescens SK114] gi|241319782|gb|EER56178.1| transcription elongation factor GreB [Neisseria flavescens SK114] Length = 163 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 74/155 (47%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + A V+D F + + + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQIFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR+LI GD + ++ P G + EIL V +I Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160 >gi|325109310|ref|YP_004270378.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM 5305] gi|324969578|gb|ADY60356.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM 5305] Length = 160 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +++ P+T +G +K+ E++ + P I ++EAR GDL ENAEY +E Q + + Sbjct: 1 MERQPITRQGHEKLLAEIKHIETVILPEINTRLAEARDEGDLKENAEYHGQREQQGMAQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ L+ + ++D + M + FG+TV++ + D++ Y+ VG E D + Sbjct: 61 KVNLLKTKLANCYIVDKADMPKGVVTFGSTVTVKDLKWDDEEAYEFVGPGEEDYDCEPMK 120 Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SSP+A+A+ GK++GD ++V+ P G + EI+++ Sbjct: 121 ILTSSPLAKAMEGKKVGDKVAVDTPQGVRELEIVKIQ 157 >gi|255068272|ref|ZP_05320127.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256] gi|255047464|gb|EET42928.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256] Length = 163 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ Sbjct: 6 KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDHRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V++ + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVNPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|119478768|ref|ZP_01618607.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2143] gi|119448347|gb|EAW29602.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2143] Length = 167 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++ E+ + ERP + + EA GD SEN +Y K + R+ Sbjct: 14 YITPEGEKALRAEVYQLWKIERPEVTAVVHEAAKNGDRSENGDYIYGKRRMREIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + E++D + D I FGA V++ + + K++Y+IVG E D+ S +S+ SP Sbjct: 74 LTKRLDSVEIVDRTPADKDIIYFGAWVTVED-EAESKQSYRIVGPDEFDLASNKLSMDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+AL+GK + D I P G++ I +V + Sbjct: 133 LAKALLGKRVEDEILFKTPEGQRELYISEVWY 164 >gi|332828969|gb|EGK01647.1| hypothetical protein HMPREF9455_02058 [Dysgonomonas gadei ATCC BAA-286] Length = 155 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MAITYMTEDGYKKLKEEISALES-ERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+++N++ A +I+ + D + V++ + + Y +V + EA+++ ++ Sbjct: 60 KIAQMKNLLANARIINEEAIGIDVVQILNKVTIRNTKNNQQMTYTLVAESEANLKENKIA 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S+P+A+ L+GK++GD+ + P G ++EI+ + Sbjct: 120 VSTPVAQGLMGKKVGDVAEIKVPSGMMSFEIVNIS 154 >gi|312866104|ref|ZP_07726325.1| transcription elongation factor GreA [Streptococcus downei F0415] gi|311098508|gb|EFQ56731.1| transcription elongation factor GreA [Streptococcus downei F0415] Length = 160 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T ++++QEL + RP +I+ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTQAEKEQLEQELEDLKLVRRPEVIERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ +E I AE+ID ++ D +A G TV + E + D+ Y IVG ADV +G Sbjct: 61 EGQIQIIETKIRYAEIIDSDAVASDEVAIGKTVVVQEVGTKDQDTYSIVGAAGADVFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK++GD ++ +P G EI+ V Sbjct: 121 ISNESPIAQALIGKKVGDKTTIESPAGSYDVEIVSVE 157 >gi|87199462|ref|YP_496719.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|87135143|gb|ABD25885.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 182 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T GF ++ ERP I++ +S A GD SEN +Y ++ + +A Sbjct: 28 PITPAGFAALRARYDHLLGTERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELAF 87 Query: 66 LENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + + V+D + R+ FGATV + +++ K +VGD E D GL+ S+ Sbjct: 88 LARRMKASRVVDPARQEDRSRVLFGATVEIADEDDNRKV-LTLVGDDEQDASKGLIGWSA 146 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIA+AL G +GD+ V P G+K +EI+ + + Sbjct: 147 PIAKALRGSRVGDLRIVRLPSGQKEWEIMAISY 179 >gi|69248024|ref|ZP_00604587.1| Prokaryotic transcription elongation factor GreA [Enterococcus faecium DO] gi|257880194|ref|ZP_05659847.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,230,933] gi|257882995|ref|ZP_05662648.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,502] gi|257888545|ref|ZP_05668198.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,141,733] gi|257891422|ref|ZP_05671075.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,410] gi|257897080|ref|ZP_05676733.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com12] gi|257899019|ref|ZP_05678672.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com15] gi|293377303|ref|ZP_06623507.1| transcription elongation factor GreA [Enterococcus faecium PC4.1] gi|294622139|ref|ZP_06701215.1| transcription elongation factor GreA [Enterococcus faecium U0317] gi|68194592|gb|EAN09082.1| Prokaryotic transcription elongation factor GreA [Enterococcus faecium DO] gi|257814422|gb|EEV43180.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,230,933] gi|257818653|gb|EEV45981.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,502] gi|257824599|gb|EEV51531.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,141,733] gi|257827782|gb|EEV54408.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,410] gi|257833645|gb|EEV60066.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com12] gi|257836931|gb|EEV62005.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium Com15] gi|291598340|gb|EFF29427.1| transcription elongation factor GreA [Enterococcus faecium U0317] gi|292643995|gb|EFF62101.1| transcription elongation factor GreA [Enterococcus faecium PC4.1] Length = 159 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157 >gi|294013274|ref|YP_003546734.1| transcription elongation factor GreB [Sphingobium japonicum UT26S] gi|292676604|dbj|BAI98122.1| transcription elongation factor GreB [Sphingobium japonicum UT26S] Length = 161 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 4/160 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P +T +GF K++ E ERP+I++ +S A GD SEN +Y ++ Sbjct: 1 MSNPHPNYITPEGFAKLRAEYDQLLGVERPKIVEVVSWAAGNGDRSENGDYLYGRKRMRE 60 Query: 59 NEGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 +G++ L + A+V+D ++ FGATV++ +++ ++ +VG+ E + + Sbjct: 61 IDGQLKRLSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASA 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G + S+PIARAL G +GD+ V P GEK YE++++ + Sbjct: 120 GRIGWSTPIARALRGAAVGDLRRVMLPAGEKEYEVMEIRY 159 >gi|145309060|gb|ABP57740.1| transcription elongation factor GreB [Chromobacterium violaceum] Length = 190 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 78/154 (50%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ +++ EL ERP +++ ++ A + GD SEN +Y K + R+ Sbjct: 33 KNYITPGGWQRLKDELYHLVNRERPEMVQVVNWAASNGDRSENGDYLYGKRRLREIDRRI 92 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + AEV+D T F + L+E+ G ++ +IVG E D+ G +S Sbjct: 93 RFLTKRLEIAEVVDPETREATDQVFFSATVLIERGDGSEQLLRIVGVDEIDLARGHISWI 152 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIAR L+ GD + P G++ E+L+V + Sbjct: 153 SPIARTLLKAREGDSVLFRGPDGDEDIEVLEVRY 186 >gi|300214537|gb|ADJ78953.1| Transcription elongation factor [Lactobacillus salivarius CECT 5713] Length = 156 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA LIG +LGDI+S++ PGG +I+ V Sbjct: 120 ISNESPIASGLIGHKLGDIVSIDTPGGTMQVKIIDVK 156 >gi|90961794|ref|YP_535710.1| transcription elongation factor [Lactobacillus salivarius UCC118] gi|90820988|gb|ABD99627.1| Transcription elongation factor [Lactobacillus salivarius UCC118] Length = 156 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 2/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA LIG +LGD++S++ PGG +I+ V Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMRVKIIDVK 156 >gi|293572488|ref|ZP_06683467.1| transcription elongation factor GreA [Enterococcus faecium E980] gi|291607405|gb|EFF36748.1| transcription elongation factor GreA [Enterococcus faecium E980] Length = 159 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIVTPGGDMLVKIVKVE 157 >gi|258647783|ref|ZP_05735252.1| transcription elongation factor GreA [Prevotella tannerae ATCC 51259] gi|260852234|gb|EEX72103.1| transcription elongation factor GreA [Prevotella tannerae ATCC 51259] Length = 177 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 91/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+DK+ L + ERP AI+EAR GDLSEN+EY AAKE Q + E ++++ Sbjct: 26 YMTQEGYDKMVARLHHMEAVERPAASAAIAEARDKGDLSENSEYDAAKEAQGMLEMKISQ 85 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID S ++ + + +TV++ +G Y IV + EA+++ G +S +P Sbjct: 86 LKEAIATAKIIDTSKLNNETVQILSTVAMKNLKTGMVMTYTIVSESEANIREGKISSQTP 145 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+G ++GD++ V P G EI + Sbjct: 146 IAQGLLGHKVGDVVEVKIPQGLIQLEIQSIS 176 >gi|148654263|ref|YP_001274468.1| transcription elongation factor GreA [Roseiflexus sp. RS-1] gi|229485907|sp|A5UPG5|GREA_ROSS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148566373|gb|ABQ88518.1| transcription elongation factor GreA [Roseiflexus sp. RS-1] Length = 157 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ E+++I+ RA++ID + G+ V++ ++ + IVG EA G Sbjct: 61 EGRIREIKSILARAQIIDEENGDNHEVRIGSRVTVRIDGEDGEETWTIVGSTEAKPSEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK ++V P G I+ + Sbjct: 121 ISNESPIGSALLGKRPRQKVTVETPSGTMKLTIVDIQ 157 >gi|87122832|ref|ZP_01078703.1| transcription elongation factor GreB [Marinomonas sp. MED121] gi|86161884|gb|EAQ63178.1| transcription elongation factor GreB [Marinomonas sp. MED121] Length = 168 Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K+ EL++ +E+RP++ +++ EA A GD SENAEY K+ + R+ Sbjct: 14 YITKEGAQKLTTELKYLWKEKRPQVTESVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+D I FGA V+L + + + K ++IVG E D S +SI SP Sbjct: 74 LEKRLEAFTVVDRLPEDQLSIYFGAWVTLED-DDENTKYFRIVGPDELDHDSRYISIDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+AL+ K+ GD I + G Y I +V + Sbjct: 133 MAKALLKKQEGDEIELKLVTGIVNYIIDKVEY 164 >gi|325678470|ref|ZP_08158086.1| transcription elongation factor GreA [Ruminococcus albus 8] gi|324109838|gb|EGC04038.1| transcription elongation factor GreA [Ruminococcus albus 8] Length = 158 Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 87/150 (58%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ G+ K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL Sbjct: 7 VSKAGYAKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I+ A V+D +S I G+ V L + + + QIVG E+D +G +S SPI Sbjct: 67 EILISNATVVDDDEVSVHEIGVGSYVKLKDLELDEVETLQIVGSTESDPDNGKISDESPI 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A + ++GDI V AP G +E+L++ Sbjct: 127 GKAAMHMKVGDIFEVEAPAGMIKFEVLEIT 156 >gi|227873285|ref|ZP_03991550.1| transcription elongation factor GreA [Oribacterium sinus F0268] gi|227840852|gb|EEJ51217.1| transcription elongation factor GreA [Oribacterium sinus F0268] Length = 161 Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T G +K++ EL + +R I + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEEKKNLLTRAGLNKLESELHNLKVNKRQEIAEKIKEAREQGDLSENAEYDAAKDEQRE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +E+++ AEV+D + I G V L +K ++ Y IVG EA+ G Sbjct: 61 IEERIVAIESLLKNAEVVDDAEE--GTINIGCKVKLFDKEFDEEVEYMIVGSTEANSLQG 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+ +GD ++V G Y++L V Sbjct: 119 KISNESPVGMALLRHRVGDEVTVETQAGVLEYKVLSVE 156 >gi|257885237|ref|ZP_05664890.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,501] gi|257821089|gb|EEV48223.1| prokaryotic transcription elongation factor GreA [Enterococcus faecium 1,231,501] Length = 159 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK D +++ PGG+ +I++V Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157 >gi|331091969|ref|ZP_08340801.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402868|gb|EGG82435.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T G K+++EL + +R + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MADKKTILTYAGLKKLEEELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ELE I+ AEV+ + D+I+ G TV++ + ++ ++IVG EA+ G Sbjct: 61 EARIEELEKILKNAEVVVEDEVDLDKISIGCTVTVYDNEFEEEIEFKIVGSTEANSLEGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +ALIG+++ D++ V G Y++L++ Sbjct: 121 ISNESPVGKALIGRKVDDVVEVETQAGVMEYKVLKIE 157 >gi|50364917|ref|YP_053342.1| transcription elongation factor [Mesoplasma florum L1] gi|81391980|sp|Q6F215|GREA_MESFL RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|50363473|gb|AAT75458.1| transcription elongation factor [Mesoplasma florum L1] Length = 156 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 96/155 (61%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MAKEIILTQEGIEELKHELKHLLEVVRPQVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ELE +I++A++I+ S+ + I G+ V + N+ + +IVG EAD GL+ Sbjct: 61 ARIKELETMISKAKLIEDSSTTDGAIKIGSKVKFIMLNTKQTREVKIVGAVEADPFKGLI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPIA+A++GK++G+ + V + EI +V Sbjct: 121 SNESPIAKAILGKKVGESVEVKDINAPYSIEIKEV 155 >gi|291530006|emb|CBK95591.1| transcription elongation factor GreA [Eubacterium siraeum 70/3] Length = 156 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IGK+LG+ +SV AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGKKLGEEVSVEAPAGVKKYKIVEI 154 >gi|212550757|ref|YP_002309074.1| transcription elongation factor GreA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548995|dbj|BAG83663.1| transcription elongation factor GreA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 156 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 96/151 (63%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+DK+ +E+ + + EERP IIK I+EAR GDLSEN EY AA+E Q++ E ++ + Sbjct: 5 YMTKGGYDKLLEEIVYLESEERPSIIKQIAEAREKGDLSENVEYNAAREAQSILELKITQ 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ +ID S + + I V+L +G Y +V + E D+++G +SI++P Sbjct: 65 LKSLVANTRLIDESHIQTNSIQILNKVTLRNIKNGQTTVYTLVSEAETDLKAGKISINTP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I++ LIGK++G+I + P G +EIL + Sbjct: 125 ISKGLIGKKVGEIAEIKTPSGIIYFEILSIS 155 >gi|227499306|ref|ZP_03929418.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098] gi|227218657|gb|EEI83891.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098] Length = 157 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 95/154 (61%), Gaps = 1/154 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKIARSFGDLSENADYDEAKNEQGEIESR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E++I A+ I++ S D + G TV++ ++ ++ +Y+IVG E++ G +S Sbjct: 65 IAKVEDMIRNAKTIEVKENS-DEVGVGNTVTVYDEEFDEEFDYKIVGTAESNPLEGFISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++ + + V+ P G+ + I + Sbjct: 124 ESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157 >gi|148553320|ref|YP_001260902.1| transcription elongation factor GreB [Sphingomonas wittichii RW1] gi|148498510|gb|ABQ66764.1| transcription elongation factor GreB [Sphingomonas wittichii RW1] Length = 163 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T GF ++ ERP +++ IS A GD SEN +Y ++ + +A Sbjct: 9 YITPAGFAAMRARYDHLFGTERPALVEVISWAAGNGDRSENGDYIYGRKKLREIDRELAY 68 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+V+D + + ++ FGATV++V+++ ++ +VG EAD SG +S S Sbjct: 69 LSRRMKAAKVVDPARQAERGKVFFGATVTVVDEDD-VERTVTLVGADEADAGSGRISWLS 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL G +GD+ V PGG++ EIL + + Sbjct: 128 PLARALRGAAVGDVRRVALPGGDREQEILSIRY 160 >gi|298373336|ref|ZP_06983325.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274 str. F0058] gi|298274388|gb|EFI15940.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274 str. F0058] Length = 156 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 91/155 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T G+ K+ E+ + +R I I+EAR GDLSENAEY AAKE Q + E Sbjct: 1 MAVVYMTEDGYKKLADEIAQMEAVDRKAISAQIAEARDKGDLSENAEYDAAKEAQGMLEM 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A+++ + A +ID S + D + TV + + + Y +V + EA+++ G ++ Sbjct: 61 KIAQMKETLANARIIDESKLKTDSVQILNTVRVKNLANKQEMTYTLVSENEANIREGKLA 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I++PI + L+GK++G++ +N P G +E++ + Sbjct: 121 INTPIGKGLLGKKIGEVAEINVPAGLMRFEVVSIS 155 >gi|229589215|ref|YP_002871334.1| transcription elongation factor [Pseudomonas fluorescens SBW25] gi|229361081|emb|CAY47944.1| transcription elongation factor [Pseudomonas fluorescens SBW25] Length = 157 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+ +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V++ ++ FGA V + G+ K ++IVG E + + Sbjct: 60 RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIEN-EQGETKRFRIVGYDEIYERMDYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SI SP+ARAL+ KE+ D V P G+ + I + ++ Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPSGDVCWWITGIEYV 156 >gi|332185240|ref|ZP_08386989.1| transcription elongation factor GreB [Sphingomonas sp. S17] gi|332014964|gb|EGI57020.1| transcription elongation factor GreB [Sphingomonas sp. S17] Length = 160 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T G+ ++QE ERP+++ I+ A GD SEN +Y ++ + Sbjct: 1 MDRPNYITPAGYAALRQEYEALFAVERPKLVDTIAWAAGNGDRSENGDYIYGRKRLREID 60 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ L + A+VID + ++ FGATV++ +++ ++ +VGD EAD G Sbjct: 61 RRLGWLSKRMKAAKVIDPARQEDRSKVWFGATVTIADEDDNERV-LTLVGDDEADAGQGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 V ++P+ RAL G +GD+ V P GE+ YE++ + + Sbjct: 120 VGWNAPLVRALRGAAIGDLRRVVLPAGEREYEVIAITY 157 >gi|103487218|ref|YP_616779.1| transcription elongation factor GreB [Sphingopyxis alaskensis RB2256] gi|98977295|gb|ABF53446.1| transcription elongation factor GreB [Sphingopyxis alaskensis RB2256] Length = 160 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ GF ++ E +ERP++++ IS A GD SEN +Y ++ + R+ L Sbjct: 9 ISPAGFAALRAEYDALLGDERPKLVEVISWAAGNGDRSENGDYIYGRKRLREIDRRLGFL 68 Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A V+D + RI FGATV L + + ++ +VGD EA+ SG + +SP Sbjct: 69 ARRMKAARVVDPAQQPDKSRIWFGATVELAD-DDDARRTVTLVGDDEAEAGSGRIGWNSP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL G +GD+ +V P G K +E++ + + Sbjct: 128 LARALRGAAVGDLRTVQLPAGPKLWEVIAIRY 159 >gi|302327668|gb|ADL26869.1| transcription elongation factor, GreA/GreB family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 155 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 89/154 (57%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ Sbjct: 2 KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ Sbjct: 62 RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI AL GK+ GD + V AP G+ YEIL+V + Sbjct: 122 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 155 >gi|307544299|ref|YP_003896778.1| transcription elongation factor GreB [Halomonas elongata DSM 2581] gi|307216323|emb|CBV41593.1| transcription elongation factor GreB [Halomonas elongata DSM 2581] Length = 193 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++++ L + +RP + + EA A GD SENA+Y K+ N R+ L Sbjct: 39 ITAEGAERLRGILDHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 98 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +++D DR+ FGA V+L + +G++ +IVG E D +S+ +P+ Sbjct: 99 TKRLDELQIVDRLPADTDRVFFGAFVTLED-ENGEELRLRIVGHDETDTGKHWISVDAPL 157 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+AL+GK L D +V APGGE TY I ++ + Sbjct: 158 AKALLGKGLDDEATVAAPGGETTYLITEIDY 188 >gi|261392938|emb|CAX50523.1| transcription elongation factor GreB (transcript cleavage factor GreB) [Neisseria meningitidis 8013] Length = 163 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + ++ EL +ERP I++ ++ A GD SEN +Y K + R+ Sbjct: 6 KNYITPARWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+AR LI GD + +N P G + EIL V +I Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160 >gi|56478200|ref|YP_159789.1| transcription elongation factor GreB [Aromatoleum aromaticum EbN1] gi|56314243|emb|CAI08888.1| transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 186 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G++ +++EL + ERP++++ ++ A + GD SEN +Y K+ + R+ Sbjct: 29 KNYMTRRGYESLRRELDHLVRIERPKMVETVAWAASNGDRSENGDYIYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120 L I AEV+D + D++ FGATVS+V+ +S D ++ +QIVG EAD +G + Sbjct: 89 RFLIKRIESAEVVDPADQREIDQVFFGATVSIVDVDSDDDSEQIWQIVGVDEADAGAGRI 148 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+ARAL+ GD++ +P G + E++++ ++ Sbjct: 149 SWISPLARALLKAREGDVVRFMSPAGPREIEVVEIRYV 186 >gi|85060298|ref|YP_456000.1| transcription elongation factor GreB [Sodalis glossinidius str. 'morsitans'] gi|84780818|dbj|BAE75595.1| transcription elongation factor GreB [Sodalis glossinidius str. 'morsitans'] Length = 155 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +G+ ++Q EL + RP I + ++ A + GD SENA+Y K++ + Sbjct: 1 MKTNLITRQGYQELQDELDHLWKRYRPEITEKVAWAASLGDRSENADYHYNKKILREIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L ++ A V+D S RI FGA V + G+ K ++I G E +S Sbjct: 61 RVRYLRRVLKEARVVDYSPQQEGRIFFGAWVEVENAE-GETKRFRIAGPDEIYKHKDYIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I SP+ARALI K + D V PGG +T+ I + + Sbjct: 120 IDSPMARALIKKAVDDEAEVVTPGGHRTWYINAISY 155 >gi|310820881|ref|YP_003953239.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] gi|309393953|gb|ADO71412.1| Transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] Length = 178 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T G +++ +EL ERP++ +S A A GD SENAEY K+ + R Sbjct: 23 QRRYLTRLGAERMHRELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRR 82 Query: 63 MAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + A ++ + R+ FGATV+L +++ G + YQIVG E D Q G +S Sbjct: 83 IRFLQKRLDTATIVTPAEQTDQGRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRIS 141 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 + SPI +AL+ K +GD + V P GE I+ + ++ Sbjct: 142 VESPIGKALLRKAVGDSVEVMRPRGEIELTIVAIAYM 178 >gi|26553820|ref|NP_757754.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2] gi|26453827|dbj|BAC44158.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2] Length = 161 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++++EL++ RP IIK I EAR GDLSENA+Y AAK Q E Sbjct: 3 AKKNLMTESGKKELEKELKYLIDVRRPEIIKQIQEAREQGDLSENADYDAAKNFQAQIES 62 Query: 62 RMAELENIITRAEVIDISTMSGDR---IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 R+ E++NI+ ++I SG + GATV++ + + G+ Y+IVG E+D Sbjct: 63 RIKEIQNILNNTKIIKEEKSSGSNEKKVHVGATVTIKDYSDGESHTYKIVGPIESDPSQN 122 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S P+A+ ++GK++G+ V +++ + Sbjct: 123 KISNECPLAKCIMGKKVGEESYVKGIDHPYKVKVVDIT 160 >gi|254468751|ref|ZP_05082157.1| transcription elongation factor GreB [beta proteobacterium KB13] gi|207087561|gb|EDZ64844.1| transcription elongation factor GreB [beta proteobacterium KB13] Length = 160 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 2/159 (1%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M ++ +T GF +++EL + +RPR++K +S A + GD SEN +Y K+ Sbjct: 1 MSEQSSYLTKNGFIYLREELNHLLKVDRPRVVKDVSWAASNGDRSENGDYIYGKKRLRQI 60 Query: 60 EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ L +I +++ID + D++ FGATV + QIVG E D + Sbjct: 61 DSRVKYLLTVIEDSKIIDPLEQENKDKVFFGATVEYENLDKNQINKIQIVGVPEVDPKEN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+++A++GK++G+I+S +P G+K EI+ +++ Sbjct: 121 KISWLSPLSKAILGKQVGEIVSYESPSGQKEIEIMSIIY 159 >gi|256821719|ref|YP_003145682.1| transcription elongation factor GreB [Kangiella koreensis DSM 16069] gi|256795258|gb|ACV25914.1| transcription elongation factor GreB [Kangiella koreensis DSM 16069] Length = 162 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +T+ G +++ EL + + RP + +AI+ A A GD SENAEY K+ + Sbjct: 1 MPRSNLITAAGAVRLRNELAYLWKTLRPEVTRAINAAAAEGDRSENAEYIYRKKQLREID 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ VI+ + D+I FGA VSL + +G + Y++VG E D + + Sbjct: 61 RRVRYLQKRTADLRVIEHTPQEKDKIFFGAQVSLED-ENGQEIIYRLVGSDEFDHKPHYI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + + P GEK + I+ + + Sbjct: 120 SIDSPMARALLKKQIDDEVKLRLPDGEKLFWIMGIEY 156 >gi|317505048|ref|ZP_07962995.1| transcription elongation factor GreA [Prevotella salivae DSM 15606] gi|315663826|gb|EFV03546.1| transcription elongation factor GreA [Prevotella salivae DSM 15606] Length = 156 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 92/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D+S +S D + + V + ++ K Y IV + EA+++ G +SI +P Sbjct: 63 MKLDIAEAKIVDVSRLSADAVQIMSKVEMTNMSNKSKMVYTIVSESEANLKQGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ ++GD++ V P G I ++ Sbjct: 123 IAQGLLNHKVGDVVEVQIPRGIIKLRIDKIS 153 >gi|163815694|ref|ZP_02207066.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759] gi|158448999|gb|EDP25994.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759] Length = 161 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKNVVTYSGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE ++ EV+D + + G V + + ++ Y IVG +AD+ + Sbjct: 61 EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVIVYDYEYDEEIEYDIVGSSQADIMNNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL G ++G+ + V AP GE Y +L + Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157 >gi|301167994|emb|CBW27580.1| transcription elongation factor [Bacteriovorax marinus SJ] Length = 154 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K FD++ E+ + ERP+ + I+ A GD SENA+Y K+ + R+ L Sbjct: 1 MTPKCFDELSAEMENLLKVERPKTTQIIAWAAGNGDRSENADYIYGKKRLREIDRRLRFL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +EVID MS +++ F ATV++ ++ + + K Y IVG E +V G +S SPI Sbjct: 61 KKRLDDSEVIDPLKMSSEKVQFSATVTVEDEEA-EVKVYSIVGIDEVEVSKGKISWRSPI 119 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 RAL+GKE+ DI+S++AP G EIL++ + Sbjct: 120 GRALLGKEVEDIVSIDAPNGSFELEILKIEY 150 >gi|116493088|ref|YP_804823.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] gi|116103238|gb|ABJ68381.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC 25745] Length = 154 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 +P+T G+ KI QE+ +Q RP +IKA+++ARA GDLSENAEY AAK EGR+ Sbjct: 6 VPMTPSGYAKINQEIDDLKQT-RPALIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ I+ +++I + S I G+ V + + D+ Y+IVG EADV + +S S Sbjct: 65 YLQRQISYSKIIQNTNHSK--IDLGSIVKMRFVDDHDEITYEIVGKHEADVVNNKISFQS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ AL+ + DI+ V AP + EIL++ Sbjct: 123 PLGSALMHHKTHDIVLVTAPDEQYQVEILEI 153 >gi|304384708|ref|ZP_07367054.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] gi|304328902|gb|EFL96122.1| transcription elongation factor GreA [Pediococcus acidilactici DSM 20284] Length = 161 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ Sbjct: 1 MADEKRYPMTLDGKQKLEEELETLKTETRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG Sbjct: 61 VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+GK++GD++++ PGG+ +IL V Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158 >gi|296282663|ref|ZP_06860661.1| transcription elongation factor GreB [Citromicrobium bathyomarinum JL354] Length = 165 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M P+T G+ ++ RP I++ +S A GD SEN +Y ++ + Sbjct: 1 MKGDNPITPAGYSAMKARYDHLLGTARPEIVETVSWAAGNGDRSENGDYLYGRKKMREID 60 Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 +A L + A VID + DR+ FGATV+LV+++ +K +VG+ EA+ G Sbjct: 61 RELAHLARRMKSARVIDPADQPNRDRVFFGATVTLVDEDD-REKVLTLVGNDEAEASEGR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARAL G E+GD+ V P G + +E+L++ + Sbjct: 120 IGWGSPMARALRGAEVGDLRMVKGPTGLREWEVLKISY 157 >gi|288925501|ref|ZP_06419434.1| transcription elongation factor GreA [Prevotella buccae D17] gi|315606633|ref|ZP_07881644.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574] gi|288337717|gb|EFC76070.1| transcription elongation factor GreA [Prevotella buccae D17] gi|315251643|gb|EFU31621.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574] Length = 155 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 90/151 (59%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ Sbjct: 3 YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D S +S D + +TV + + K Y IV + EA+++ G +SI +P Sbjct: 63 MKTTIAEAKIVDTSRLSADAVQILSTVEMTNMGNKAKMTYTIVSESEANLKEGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD+ + P G I ++ Sbjct: 123 IAQGLLNKKVGDVAEIKIPSGTIKLRIDKIT 153 >gi|73748580|ref|YP_307819.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1] gi|73660296|emb|CAI82903.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1] Length = 170 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG Sbjct: 15 VEKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 73 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S Sbjct: 74 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 133 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SSPI +AL + GD I + P G Y I + + Sbjct: 134 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 169 >gi|326798984|ref|YP_004316803.1| transcription elongation factor GreA [Sphingobacterium sp. 21] gi|326549748|gb|ADZ78133.1| transcription elongation factor GreA [Sphingobacterium sp. 21] Length = 157 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 99/156 (63%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + +G +K+++EL++ + E R I +AI+EAR GDLSENAEY AAKE Q L+E Sbjct: 1 MADVTYYSKEGLEKLKEELQYLKTEGRAAIARAIAEARDKGDLSENAEYDAAKEAQGLHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A+LE ++ A +ID S + ++ + V L +G YQ+V + EAD++SG + Sbjct: 61 AKIAKLEEVLANARLIDESKLDVTKVLALSIVKLKNTKNGAIMTYQLVSETEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+ SPIA+ L+GK +GD + P G+ EIL++ Sbjct: 121 SVKSPIAQGLLGKSVGDKAEIEVPAGKIELEILEIS 156 >gi|237748857|ref|ZP_04579337.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] gi|229380219|gb|EEO30310.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] Length = 184 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++ EL +ERP++++ +S A + GD SEN +Y K + R+ Sbjct: 27 KNYITPAGLKSLKDELLSLIDKERPQVVQIVSWAASNGDRSENGDYIYGKRRLREIDRRI 86 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AE D S G D+I FGATV+ E+ G++ IVG E D G +S Sbjct: 87 RFLIKRIEAAEEFDPSIHYGNDQIFFGATVTY-EREDGEENTITIVGIDEFDPLEGRISW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ LI GD ++++ P G + IL+V + Sbjct: 146 ISPMAKTLIKAREGDTVTLHTPAGIEELVILEVNY 180 >gi|116747675|ref|YP_844362.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] gi|116696739|gb|ABK15927.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] Length = 155 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 83/153 (54%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+P+T G+ ++ +EL + + RP +I+ + EAR G EN +Y A+E + + ++ Sbjct: 2 KVPITRLGYHRLLRELFFLRHVVRPEVIEELQEARTGGIKIENQQYMLARERHMVLQKKI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + E++ + FG V + +G+ + YQ+VG E++V G +SI Sbjct: 62 QDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSID 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ R L+G+ G+ + V P G + Y ++ + Sbjct: 122 SPVGRHLVGRREGEEVLVYTPAGVRMYRVVSIT 154 >gi|167751089|ref|ZP_02423216.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702] gi|167656007|gb|EDS00137.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702] Length = 156 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IG++LG+ +SV AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGRKLGEEVSVEAPAGVKKYKIVEI 154 >gi|291166186|gb|EFE28232.1| transcription elongation factor GreA [Filifactor alocis ATCC 35896] Length = 161 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T G+ KI++EL + + R + + I A ++GD+SENAEY AK Q E R Sbjct: 9 EEALITQSGYQKIEEELEYLKATRRLEVAERIKVALSFGDISENAEYDEAKNEQAQLEER 68 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +++LENI+ A ++D S + D + G+ V L + G+ + Y IVG E+D S +S Sbjct: 69 ISKLENILRTAVIVDESKLEHDVVNIGSWVKLDYE--GEIEEYTIVGSAESDPSSSKISN 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +PI +AL+G+ G+ I V P G +IL+V Sbjct: 127 EAPIGKALMGRREGESIEVQVPNGVVNIKILEVR 160 >gi|325479434|gb|EGC82530.1| transcription elongation factor GreA [Anaerococcus prevotii ACS-065-V-Col13] Length = 157 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E++I A+ I+++ S D + G TV++ ++ + Y+IVG E++ G +S Sbjct: 65 IAKVEDMIRNAKTIEVNENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++ + + V+ P G+ + I + Sbjct: 124 ESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157 >gi|312868364|ref|ZP_07728564.1| transcription elongation factor GreA [Streptococcus parasanguinis F0405] gi|322390081|ref|ZP_08063616.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 903] gi|311096109|gb|EFQ54353.1| transcription elongation factor GreA [Streptococcus parasanguinis F0405] gi|321143208|gb|EFX38651.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 903] Length = 160 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K++QEL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI ALIGK+ GD+++V P G +IL V Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157 >gi|254513872|ref|ZP_05125933.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3] gi|219676115|gb|EED32480.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL ++ERP + A+ +A GD SEN +Y K+ + R+ + Sbjct: 15 ITAAGEARLRAELDNLWRKERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ + RI FGATV + ++++ + I+G E + G VSI SPI Sbjct: 75 SKRLESLQVVRETPSDTSRIFFGATVEVEDQHA-VIQTITILGPDEFESSRGEVSIDSPI 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 AR L+GK +GD + + +PGGE+ E+L + + Sbjct: 134 ARVLLGKSVGDSVRLESPGGERELEVLDIRY 164 >gi|282880637|ref|ZP_06289343.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] gi|281305532|gb|EFA97586.1| putative transcription elongation factor GreA [Prevotella timonensis CRIS 5C-B1] Length = 155 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D+S +S + + + V + + K Y IV + EAD+++G +SI +P Sbjct: 63 MKLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G I + Sbjct: 123 IAQGLLNKKVGDEVEIKIPAGTIHLRIDNIS 153 >gi|57234441|ref|YP_181502.1| transcription elongation factor GreA [Dehalococcoides ethenogenes 195] gi|123759708|sp|Q3Z8E7|GREA_DEHE1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|57224889|gb|AAW39946.1| transcription elongation factor GreA [Dehalococcoides ethenogenes 195] Length = 156 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + E Sbjct: 1 MVEKIPMTASGYKKLEDELSTLK-VKRIDVIEEMRLAAMDKDMRENAPYHAAKEQRGQIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+E+ + A+V + + + ++ G+TV L + +G+ Y +V +E + G + Sbjct: 60 GRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SSPI +A+ + G+ I + P G Y I + + Sbjct: 120 SASSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 156 >gi|270290410|ref|ZP_06196635.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] gi|270281191|gb|EFA27024.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4] Length = 161 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ Sbjct: 1 MADEKRYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG Sbjct: 61 VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+GK++GD++++ PGG+ +IL V Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158 >gi|91202565|emb|CAJ72204.1| hypothetical protein kustd1459 [Candidatus Kuenenia stuttgartiensis] Length = 741 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 83/154 (53%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI VT G++K ++EL + + + EA + GDL ENAEYQAA+E Q + Sbjct: 585 NKIYVTKHGYEKQKKELDNIMNIQFAENARDLGEAISRGDLRENAEYQAAREKQAQLIEK 644 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L+ + + I+ T+ + ++ G V++ K+ + Y ++G +AD+ ++S Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI + L+ K+ G+ +++ P E +I+++ Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKIE 738 >gi|262371975|ref|ZP_06065254.1| transcription elongation factor GreB [Acinetobacter junii SH205] gi|262312000|gb|EEY93085.1| transcription elongation factor GreB [Acinetobacter junii SH205] Length = 162 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120 R+ L + +++D ++ FGA V + ++G++K +IVG D+ D + Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-DAGEQKTLRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + V P G+K + I + + Sbjct: 120 SIESPMARALLSKQVDDEVEVITPLGKKLWYINSIRY 156 >gi|269125318|ref|YP_003298688.1| transcription elongation factor GreA [Thermomonospora curvata DSM 43183] gi|268310276|gb|ACY96650.1| transcription elongation factor GreA [Thermomonospora curvata DSM 43183] Length = 166 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 2/150 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL + R I + I AR GDL EN Y AAKE Q EGR+ + Sbjct: 11 WLTQEAYDRLKAELEYLSGPGRIEIAQKIEAAREEGDLRENGGYHAAKEEQGKIEGRILQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++I+ + V + G + G TV++ ++ ++ + + +E+ + S SP Sbjct: 71 LQHILENSRVGEAPRTDG-VVGPGMTVTVAFEDDDEELTFLLASREESGAPIDVYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154 + A+ GK++G+ + P G T EIL Sbjct: 130 LGSAINGKKVGEKATYTLPNGRSMTVEILD 159 >gi|323341649|ref|ZP_08081882.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464074|gb|EFY09267.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 156 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++IPVT G D++ +ELR + ERP +I+ + ARA GDLSENA+Y AA++ Q E Sbjct: 1 MTERIPVTQAGLDELNRELRQLIEVERPEVIEDLKAARAQGDLSENADYDAARDRQARVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +T+ E+ID + + GATV++ + ++ + IVG EAD ++G Sbjct: 61 ARIREIEATLTKVEIIDGDKAKKHKTVGLGATVTIYDMEMEIEETFSIVGSVEADPENGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A+A+ + GD++ V ++L++ Sbjct: 121 LSNVSPLAQAMNEAKEGDVVEVQV-DEPYEVKVLKI 155 >gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC 33200] gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii FI9785] Length = 153 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + +E+I I G+ V+L+ + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+ K+ G ++V AP G +I+ V Sbjct: 118 SFDSPLGQALMKKKAGATVTVEAPAGSYDVKIIAV 152 >gi|148544438|ref|YP_001271808.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|184153802|ref|YP_001842143.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|194466620|ref|ZP_03072607.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|227363134|ref|ZP_03847269.1| elongation factor GreA [Lactobacillus reuteri MM2-3] gi|227543959|ref|ZP_03974008.1| elongation factor GreA [Lactobacillus reuteri CF48-3A] gi|300909709|ref|ZP_07127170.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112] gi|325682760|ref|ZP_08162276.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A] gi|148531472|gb|ABQ83471.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|183225146|dbj|BAG25663.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|194453656|gb|EDX42553.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|227071852|gb|EEI10140.1| elongation factor GreA [Lactobacillus reuteri MM2-3] gi|227186075|gb|EEI66146.1| elongation factor GreA [Lactobacillus reuteri CF48-3A] gi|300893574|gb|EFK86933.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112] gi|324977110|gb|EGC14061.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A] Length = 158 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 103/157 (65%), Gaps = 2/157 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + Sbjct: 1 MAEEKTFPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+A++EN++ AE+ID + D ++ G T+++ E + + YQIVG+ E+D +G Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+A+ L+G ++G+++ V P G +I++V Sbjct: 121 KISNESPMAKGLLGHKVGEVVEVEVPNGTIKLKIVKV 157 >gi|118581707|ref|YP_902957.1| transcription elongation factor GreB [Pelobacter propionicus DSM 2379] gi|118504417|gb|ABL00900.1| transcription elongation factor GreB [Pelobacter propionicus DSM 2379] Length = 157 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 2/149 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G K++ E + + ERP++++ +S+A A GD SENAEY K+ + ++ L Sbjct: 5 ITAEGLKKLEAEFDYLWRVERPKVVRGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKHL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V + + FG VS +++ G + YQ+VG E DV SG +SI SP+ Sbjct: 65 GSRLKLLKV-RSLPAKPESVGFGCWVSYEDED-GAGRCYQLVGPDEFDVSSGRISIDSPV 122 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GK + D ++++ P G+ T I + Sbjct: 123 GQALLGKRVDDEVTISRPNGDLTVYITAI 151 >gi|304383994|ref|ZP_07366450.1| transcription elongation factor GreA [Prevotella marshii DSM 16973] gi|304334886|gb|EFM01160.1| transcription elongation factor GreA [Prevotella marshii DSM 16973] Length = 202 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 93/151 (61%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ + ERP+I AI+EAR GDLSEN+EY+AAKE Q E R+ + Sbjct: 50 YMSQEGYDKMIAELQRLEAVERPKISAAIAEARDKGDLSENSEYEAAKEAQAHLEDRINK 109 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D S +S + + + V + + K Y IV + EA+++ G ++I++P Sbjct: 110 MKRTIAEAKIVDTSRLSNEAVQILSKVEMTNLGNKAKMTYTIVSENEANLKEGKIAITTP 169 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G I ++ Sbjct: 170 IAQGLLNKKVGDEVEIAIPRGTIKLRIDKIS 200 >gi|296875962|ref|ZP_06900021.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 15912] gi|296433037|gb|EFH18825.1| transcription elongation factor GreA [Streptococcus parasanguinis ATCC 15912] Length = 160 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI ALIGK+ GD+++V P G +IL V Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157 >gi|303256877|ref|ZP_07342891.1| transcription elongation factor GreB [Burkholderiales bacterium 1_1_47] gi|330998874|ref|ZP_08322601.1| transcription elongation factor GreB [Parasutterella excrementihominis YIT 11859] gi|302860368|gb|EFL83445.1| transcription elongation factor GreB [Burkholderiales bacterium 1_1_47] gi|329576088|gb|EGG57607.1| transcription elongation factor GreB [Parasutterella excrementihominis YIT 11859] Length = 191 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T ++++ E + ERP ++ ++ A + GD SENA+YQ K+ + R+ Sbjct: 27 KNYMTRACYNRLLDERKNLVLVERPNVVNVVAWAASNGDRSENADYQYGKQRLREIDRRI 86 Query: 64 AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I +EVIDI D+I FGAT+ GD+ +IVG EAD G VS Sbjct: 87 RFLNKRIEASEVIDIDKRPPTDQIFFGATIVYAN-EQGDESKIRIVGIDEADASVGDVSW 145 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SPIAR + GD + + P G K EIL+V ++ Sbjct: 146 ISPIARVFLKHFEGDTVLLPTPKGVKKLEILEVTYV 181 >gi|281421109|ref|ZP_06252108.1| transcription elongation factor GreA [Prevotella copri DSM 18205] gi|281404644|gb|EFB35324.1| transcription elongation factor GreA [Prevotella copri DSM 18205] Length = 155 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 88/152 (57%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL+ ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ Sbjct: 3 YMSQEGYDKLVAELKQLVSVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A++ID +S D + + V + + K Y IV + EA+++ G +SI +P Sbjct: 63 LKLTIAEAKIIDTKQLSTDSVQIMSKVEMTNMANKAKMTYTIVSESEANLKEGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+ K++G++ + P G I ++ + Sbjct: 123 IAQGLLNKKVGEVAEIKIPRGTINLRIDKISF 154 >gi|78776745|ref|YP_393060.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] gi|78497285|gb|ABB43825.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM 1251] Length = 174 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 97/154 (62%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + P++ +G+D + +E ++ + E+P+ + A A GD SENA+YQAAKE + R+ Sbjct: 2 QEPMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRL 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I +A +ID ST+ +++FG++V +++ S ++ Y I G E++ ++GL+SI Sbjct: 62 FYLNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIH 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+A+ ++GK + D + P +K YEIL++ + Sbjct: 122 SPLAQVMLGKRVSDEFKIQLPLMKKEYEILEIYY 155 >gi|291556889|emb|CBL34006.1| transcription elongation factor GreA [Eubacterium siraeum V10Sc8a] Length = 156 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ + Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SPI +A IG++LG+ + V AP G K Y+I+++ Sbjct: 120 SDESPIGKACIGRKLGEEVLVEAPAGVKKYKIVEI 154 >gi|58040290|ref|YP_192254.1| transcription elongation factor GreB [Gluconobacter oxydans 621H] gi|58002704|gb|AAW61598.1| Transcription elongation factor GreB [Gluconobacter oxydans 621H] Length = 168 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 6/162 (3%) Query: 1 MVDKIPVT----SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56 M +K P++ KG ++ EL+ Q+ERPRI++ +S A GD SENA+YQ K Sbjct: 1 MAEKTPLSHYLSPKGAVVMRAELKELAQKERPRIVEIVSWAAGNGDRSENADYQYGKRRL 60 Query: 57 NLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + RM L + A ++D + + DR+ FGATV+ V+++ + I+G E+D+ Sbjct: 61 REIDRRMRFLGKRLENAVIVDPAAQTTRDRVFFGATVTYVDEDD-VEHTVTILGVDESDL 119 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G VS+ SP+ARAL+ +GD+ + P G EIL++++ Sbjct: 120 ARGEVSLMSPVARALMRTRVGDVAMLQTPRGPVEIEILKIVY 161 >gi|301299802|ref|ZP_07206044.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852615|gb|EFK80257.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 157 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117 E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +A++ K++G +V AP G T +I+ + Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVVAPAGSYTVKIISIS 156 >gi|189485414|ref|YP_001956355.1| transcription elongation factor GreA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287373|dbj|BAG13894.1| transcription elongation factor GreA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 158 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +I +T +G K+ +EL Q+ + P I I+ AR +GDL ENAEY AAKE Sbjct: 1 MSEIYLTREGRKKLIKELNELQKRK-PLIQDEIASAREHGDLRENAEYCAAKETLANLIR 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ EL + I A++I+ + D++ G TV++ + G Y IV +EAD + +S Sbjct: 60 RIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKD-EYGADYQYAIVDLEEADPVANRIS 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SP+A+ L+G G+ ++V P G+ ++IL++ Sbjct: 119 IQSPLAQGLLGHTAGETVAVELPAGKTKFKILKIS 153 >gi|92114676|ref|YP_574604.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] gi|91797766|gb|ABE59905.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G+ +++ + +RP + + EA A GD SENA+Y K+ N R+ L Sbjct: 25 ITARGYARLKGIHEHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 84 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+D R+ FGA V+L + + G++ +IVG E D +S+ +P+ Sbjct: 85 GKRLDELQVVDRLPADTSRVYFGAYVTLED-DDGEEMTIRIVGHDETDTDKRWISVDAPL 143 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 A+A++GK L + ++VNAPGG+ TY I + + Sbjct: 144 AQAMLGKGLDEDVTVNAPGGDTTYIITDIAY 174 >gi|320547393|ref|ZP_08041681.1| transcription elongation factor GreA [Streptococcus equinus ATCC 9812] gi|320447938|gb|EFW88693.1| transcription elongation factor GreA [Streptococcus equinus ATCC 9812] Length = 178 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 19 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 78 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ +E I AE+ID ++ D +A G TV++ E ++ DK Y IVG AD+ +G Sbjct: 79 EGQIQIIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVSTTDKDVYHIVGAAGADIFAGR 138 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GDI+++ +P G EI+ V Sbjct: 139 ISNESPIAQALIGKKTGDIVTIESPAGNYDVEIISVE 175 >gi|291544387|emb|CBL17496.1| transcription elongation factor GreA [Ruminococcus sp. 18P13] Length = 156 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 90/155 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K ++ +G++K++Q+L + R + + + EAR++GDLSENAEY AK Q + E Sbjct: 1 MAKKQMSREGYEKLEQKLSYLITVRRAEVAQKLKEARSFGDLSENAEYDEAKNEQGILEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AEL+ + AE+++ +S D I G+ + + + + QIVG EA+ + G +S Sbjct: 61 EIAELQITLENAEIVEDDNISVDEIGMGSIIEIRRVGTDKIERLQIVGTNEANFKEGKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI ++ + K +GD V AP GE +E++ + Sbjct: 121 DESPIGKSALKKRVGDTFLVEAPAGELEFEVVAIS 155 >gi|257066134|ref|YP_003152390.1| transcription elongation factor GreA [Anaerococcus prevotii DSM 20548] gi|256798014|gb|ACV28669.1| transcription elongation factor GreA [Anaerococcus prevotii DSM 20548] Length = 157 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A++E++I A+ I++ S D + G TV++ ++ + Y+IVG E++ G +S Sbjct: 65 IAKVEDMIRNAKTIEVIENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIGK++ + + V+ P G+ + I + Sbjct: 124 ESPVGAALIGKKVDERVEVSTPNGKMYFVIKNIK 157 >gi|307295011|ref|ZP_07574853.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] gi|306879485|gb|EFN10703.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum L-1] Length = 160 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++ Sbjct: 7 YITPEGFAKLRAEYDQLLGHERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKR 66 Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+ Sbjct: 67 LSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWST 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARAL G +GD+ V P GEK YE++++ + Sbjct: 126 PIARALRGAAVGDLRRVILPAGEKEYEVMEIRY 158 >gi|310658260|ref|YP_003935981.1| transcription elongation factor [Clostridium sticklandii DSM 519] gi|308825038|emb|CBH21076.1| transcription elongation factor [Clostridium sticklandii] Length = 164 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 4/158 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +I +T +GF KI+ EL + R + + I A ++GD+SEN+EY AK Q E R Sbjct: 6 KEILLTEEGFKKIEDELELLKTVRRKEVAERIKVAISFGDISENSEYDEAKNEQAQLEER 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEK----NSGDKKNYQIVGDQEADVQSG 118 + +LENI+ A +ID S++ + + G+ V + K + ++ Y IVG EAD Sbjct: 66 ILKLENILRVAVIIDESSIDTNLVTVGSVVKIEFKDALTDEVEEDEYTIVGSAEADPSES 125 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +AL+G+ +GD I V P G +IL++ Sbjct: 126 KISNESPIGKALLGRVVGDEIDVQVPDGISKIKILEIR 163 >gi|218660639|ref|ZP_03516569.1| transcription elongation factor GreA [Rhizobium etli IE4771] Length = 119 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 77/118 (65%), Positives = 96/118 (81%) Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99 ENAEY AAKE Q+ NEGR++EL+++ RAEVID++ MSGD+I FGA V LV++++ Sbjct: 1 MATFPENAEYHAAKEAQSHNEGRISELKDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDT 60 Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 61 EEEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 118 >gi|262340920|ref|YP_003283775.1| transcription elongation factor GreA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272257|gb|ACY40165.1| transcription elongation factor GreA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 160 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 2/158 (1%) Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++K +T +G K+Q+E+ + ERP+I I+EAR GDLSENAEY A KE Q E Sbjct: 1 MEKFEYITKEGLKKLQKEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQGFLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +A+L+ ++ A +ID + ++ R++ +TV + G ++ Y +V + EAD++SG + Sbjct: 61 MNIAKLKKKLSNARIIDGTQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 SI++PI+ L+GK++G I + P YEIL++ + Sbjct: 121 SINTPISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 158 >gi|255671638|gb|ACU26399.1| transcription elongation factor [uncultured bacterium HF186_25m_30B18] gi|255671676|gb|ACU26436.1| transcription elongation factor [uncultured bacterium HF186_75m_14K15] gi|255671727|gb|ACU26485.1| transcription elongation factor [uncultured bacterium HF186_25m_13D19] Length = 163 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 1/155 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +GF++++ E ERP I+ ++ A A GD SENAEY K+ + R+ Sbjct: 5 KNYITPRGFNRLRAEHDQLWFVERPHIVDEVARAAAMGDRSENAEYIYGKKRLREIDRRL 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + E++D + G+RI FGATV+L + G +K +VG E +V +S Sbjct: 65 RWLNKRLDMTEIVDPAIDRGERIFFGATVTLGYMD-GTEKQVALVGVDEIEVDKQRISWR 123 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ R LIGK GD +++N G EIL+V ++ Sbjct: 124 SPLGRLLIGKSEGDEVTLNHAGEVTPIEILEVAYL 158 >gi|58578740|ref|YP_196952.1| transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] gi|58616800|ref|YP_195999.1| transcription elongation factor greA [Ehrlichia ruminantium str. Gardel] gi|58416412|emb|CAI27525.1| Transcription elongation factor greA [Ehrlichia ruminantium str. Gardel] gi|58417366|emb|CAI26570.1| Transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] Length = 166 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 74/163 (45%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 5 MNERFPITKAGFEKLELE-LESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 63 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID++ +SGD + FGATV+ + ++ +G D+ YQIVG+ E+D+ Sbjct: 64 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 123 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I Sbjct: 124 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166 >gi|289422572|ref|ZP_06424415.1| transcription elongation factor GreA [Peptostreptococcus anaerobius 653-L] gi|289157144|gb|EFD05766.1| transcription elongation factor GreA [Peptostreptococcus anaerobius 653-L] Length = 161 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 96/155 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T +GFDK+++EL + R + + + A ++GDLSENAEY AK+ Q E Sbjct: 6 SKEIILTQEGFDKLEEELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LEN++ +A +ID S++ D I G+ V + +++ ++ Y IVG EAD +G +S Sbjct: 66 RIIKLENMVRKAVIIDESSVDLDVITIGSIVRIYDEDFDEEVEYSIVGSAEADPYNGKIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ++L+G ++GD++ VN P G ++L + Sbjct: 126 NESPVGKSLLGSKIGDVVEVNVPDGIIKLKVLDIK 160 >gi|189424976|ref|YP_001952153.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] gi|189421235|gb|ACD95633.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] Length = 157 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +TS+G ++Q E + + ERP++++ +S+A A GD SENAEY K+ + ++ +L Sbjct: 5 ITSQGLKRLQDEFEYLWRVERPKVVQGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKQL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + E+ + R++FG VS + G+ YQ+ G E DV+ G++SI SP+ Sbjct: 65 GGRLKVLEIAPAPPQNPVRVSFGCWVSYEDLE-GNSYCYQLGGPDEFDVKQGVISIDSPV 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AL+ +++ D +++ PGG+ I ++ I Sbjct: 124 GQALLHRQVDDEVTIRRPGGDLVVYITEIRTI 155 >gi|284033490|ref|YP_003383421.1| transcription elongation factor GreA [Kribbella flavida DSM 17836] gi|283812783|gb|ADB34622.1| transcription elongation factor GreA [Kribbella flavida DSM 17836] Length = 169 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T G+D+++ EL + R I + ISEAR GDL EN Y AAK+ Q E R+ Sbjct: 10 VWLTQDGYDQLKSELEHLKGPARAEITQRISEARDEGDLKENGGYHAAKDEQGKIEARIR 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQSGLV 120 +LE+++ RA V + G + G VS+ D + + + + + V + Sbjct: 70 QLEDMLRRARVGETPKDDG-VVEPGMKVSITFAGDDDVETFLLGSRELLALDTSVDIDVY 128 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S SP+ A++GK+ GD + AP G + T EI+ Sbjct: 129 SPQSPLGAAIMGKKKGDKATYEAPNGKDVTVEIVA 163 >gi|90961105|ref|YP_535021.1| transcription elongation factor GreA [Lactobacillus salivarius UCC118] gi|90820299|gb|ABD98938.1| Transcription elongation factor [Lactobacillus salivarius UCC118] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117 E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +A++ K++G +V AP G T +I+ + Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVIAPAGSYTVKIISIS 156 >gi|300871555|ref|YP_003786428.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000] gi|300689256|gb|ADK31927.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000] Length = 154 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+DK++++L + E + I+EAR GDL ENAEY AA+E Q L + ++++ Sbjct: 4 PITKEGYDKVKEKLSELKAEFDT-LPAIIAEAREKGDLKENAEYHAAREKQGLLQAQISK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ + E++D S M+ D + FG V + +KNS Y+IVG+ EAD+ ++I +P Sbjct: 63 LESDLAVCEIVDPSKMNKDIVTFGKRVKVKDKNSNAVSEYRIVGELEADMSKNEITIVTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IAR L+ K++GD++++ P G+K EIL++ Sbjct: 123 IARGLLTKKVGDVVTIKVPAGDKVLEILEIS 153 >gi|220917962|ref|YP_002493266.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955816|gb|ACL66200.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans 2CP-1] Length = 163 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF ++ E E RPRI+ + A A GD SENAEY K+ + R+ Sbjct: 7 YITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V++ R FGA V++ E+ G + ++VG E DV +GL+S+ +P Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQARRVRLVGPDEFDVAAGLISVDAP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK GD++ V+ P G +++V W Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVELTVVEVSW 157 >gi|171780266|ref|ZP_02921170.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281614|gb|EDT47049.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 160 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ +E I AE+ID ++ D +A G TV++ E + DK Y IVG AD+ SG Sbjct: 61 EGQIQNIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVGTTDKDVYHIVGAAGADIFSGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GDI+++ +P G EI+ V Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVEIISVE 157 >gi|323343448|ref|ZP_08083675.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269] gi|323095267|gb|EFZ37841.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269] Length = 155 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 90/151 (59%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ Sbjct: 3 YMSQEGYDKLVAELRQLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A+++D S +S D + + V + + K +Y IV + EAD++ G +SI +P Sbjct: 63 LKLTIAEAKIVDTSRLSTDAVQILSKVDMTNMTTKSKMSYTIVSESEADLKQGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G I ++ Sbjct: 123 IAQGLLNKKVGDEVEIKIPRGVIRLRIDKIT 153 >gi|225619028|ref|YP_002720254.1| transcription elongation factor GreA [Brachyspira hyodysenteriae WA1] gi|225213847|gb|ACN82581.1| transcription elongation factor GreA [Brachyspira hyodysenteriae WA1] Length = 154 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 95/151 (62%), Gaps = 1/151 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+DK + +L + E + I+EAR GDL ENAEY AAKE Q L ++++ Sbjct: 4 PITKEGYDKAKSKLADLKAEFET-LPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ + E+ID + + D + FG V + +K+ Y+IVG+ EAD+ ++I +P Sbjct: 63 LESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+GK++GD++++ P G+K EIL++ Sbjct: 123 IAKGLLGKKIGDVVTIKVPAGDKVLEILEIS 153 >gi|157693131|ref|YP_001487593.1| transcription elongation factor GreA [Bacillus pumilus SAFR-032] gi|189042234|sp|A8FFL6|GREA_BACP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157681889|gb|ABV63033.1| transcription elongation factor [Bacillus pumilus SAFR-032] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 88/133 (66%), Gaps = 1/133 (0%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 +R +++ I AR++GDLSEN+EY +AKE Q EGR+ L+N+I A++I+ + Sbjct: 26 TVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITTLDNMIRNAKIIE-DEGNS 84 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 + ++ G TV+ VE G++++Y IVG EAD G +S SPIA++L+GK++ D ++V Sbjct: 85 NIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSPIAKSLLGKQVDDKVTVQT 144 Query: 144 PGGEKTYEILQVL 156 PGGE +I+++ Sbjct: 145 PGGEMFVQIVKIS 157 >gi|57238811|ref|YP_179947.1| transcription elongation factor greA [Ehrlichia ruminantium str. Welgevonden] gi|57160890|emb|CAH57795.1| transcription elongation factor GreA [Ehrlichia ruminantium str. Welgevonden] Length = 162 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 74/163 (45%), Positives = 115/163 (70%), Gaps = 6/163 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E Sbjct: 1 MNERFPITKAGFEKLELE-LESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116 ++ ELE+ +RAEVID++ +SGD + FGATV+ + ++ +G D+ YQIVG+ E+D+ Sbjct: 60 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158 ++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I Sbjct: 120 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162 >gi|114565687|ref|YP_752841.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319142|sp|Q0B0N4|GREA_SYNWW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|114336622|gb|ABI67470.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 159 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 94/158 (59%), Gaps = 2/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ + +T +G +K++ EL + +R + + I +A A+GD++EN+EY+ AK Q Sbjct: 1 MAEEKEVVLTKEGLEKLENELEHLKSVKREEVAERIKQAIAFGDITENSEYEDAKNEQAF 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ LE + +A +++ + D ++ G+ ++L E SG + +V E+ ++ G Sbjct: 61 IEGRIISLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +A++GK++ +SV AP G Y+I++V Sbjct: 121 KISDESPVGKAIMGKKVKSTVSVEAPAGTIKYKIIKVE 158 >gi|300214037|gb|ADJ78453.1| Transcription elongation factor [Lactobacillus salivarius CECT 5713] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117 E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +A++ K++G +V AP G T +I+ + Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVVAPTGSYTVKIISIS 156 >gi|293374263|ref|ZP_06620591.1| transcription elongation factor GreA [Turicibacter sanguinis PC909] gi|325844834|ref|ZP_08168286.1| transcription elongation factor GreA [Turicibacter sp. HGF1] gi|292647096|gb|EFF65078.1| transcription elongation factor GreA [Turicibacter sanguinis PC909] gi|325489021|gb|EGC91409.1| transcription elongation factor GreA [Turicibacter sp. HGF1] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G K Q EL QQ I + EARA GDLSENAEY AA+E Q + Sbjct: 1 MKEKQQHLTLEGIKKFQDELDHLQQVRMEEIKVKLQEARAQGDLSENAEYDAAREEQAMV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ EL+ I+ A VI+ S + + I G+TVS E+ + ++ Y+IVG EA+ Sbjct: 61 YERIQELQYILKNAVVIE-SDENSEVITIGSTVSYQEEETDEQMTYKIVGSAEANPFEAK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+AL+GK +GD+ V+ P G T IL V Sbjct: 120 ISNESPIAQALMGKRVGDVAMVSTPKGIVTVVILDVQ 156 >gi|227892405|ref|ZP_04010210.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC 11741] gi|227865812|gb|EEJ73233.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC 11741] Length = 157 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117 E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +A++ K++G ++ AP G T +I+ + Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATIVAPAGSYTVKIISIS 156 >gi|319892663|ref|YP_004149538.1| Transcription elongation factor GreA [Staphylococcus pseudintermedius HKU10-03] gi|317162359|gb|ADV05902.1| Transcription elongation factor GreA [Staphylococcus pseudintermedius HKU10-03] gi|323464299|gb|ADX76452.1| transcription elongation factor GreA [Staphylococcus pseudintermedius ED99] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 97/154 (62%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E ++ A +I+ T + G TV+ VE D+++YQIVG E+D +G +S Sbjct: 65 IQRIETMLRHALIIE-DTGDNHVVQIGKTVTFVELPGNDEESYQIVGSAESDAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155 SP+A+ALIGK++ D + V P GGE +I+ + Sbjct: 124 ESPMAQALIGKQVDDEVRVPLPNGGEMNVKIVDI 157 >gi|227511608|ref|ZP_03941657.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] gi|227085102|gb|EEI20414.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC 11577] Length = 155 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+ Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ + D + G V+ + + YQIVG E D+ +G +SI+SP Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I AL+ G+I+++ AP +I ++ Sbjct: 124 IGAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154 >gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC 6026] Length = 153 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + +E+I I G+ V+L+ + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152 >gi|315925853|ref|ZP_07922059.1| transcription elongation factor GreA [Pseudoramibacter alactolyticus ATCC 23263] gi|315620817|gb|EFV00792.1| transcription elongation factor GreA [Pseudoramibacter alactolyticus ATCC 23263] Length = 165 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +++ VT +G +K++ EL + R +I+ + AR YGDLSEN+EY AK Q+ E Sbjct: 13 MSEEMIVTQEGLEKMKAELEQLKTVTRYEVIEKLRTARGYGDLSENSEYDEAKNEQSFVE 72 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ ELE+ I +V++ + D + G+ V + +G YQIVG EA+++ G + Sbjct: 73 GRIKELEHQIHHVKVVEE--VQTDVVGIGSYVKVA--TAGKNLEYQIVGSAEANIKEGKL 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S +SP+ L+G + GD++ + P G TYEIL + Sbjct: 129 SNASPVGEGLMGCQAGDVVEIEVPRGVVTYEILDI 163 >gi|297626874|ref|YP_003688637.1| Transcription elongation factor GreA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922639|emb|CBL57216.1| Transcription elongation factor GreA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 167 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M DK I +T + K+Q+EL + + E R I K I A+A GDLSEN Y AA+E Q Sbjct: 1 MSDKQTIWMTQDAYTKLQEELDYLKGEGRSLIAKKIGAAKAEGDLSENGGYHAAREEQGQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----- 113 E R+ +LE ++ AEV + + D + G+TV++ D + ++G +E Sbjct: 61 QELRIRQLEQMLQHAEVGEP-QGAPDEVTAGSTVTVAYDGDPDDTDVFLLGSREMMGVDK 119 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 V + + S SP+ A++G+ GD + AP G E + +I++V Sbjct: 120 SVDTQVFSPQSPLGAAVLGRSAGDTVEYQAPNGREVSVKIMKVE 163 >gi|296125308|ref|YP_003632560.1| transcription elongation factor GreA [Brachyspira murdochii DSM 12563] gi|296017124|gb|ADG70361.1| transcription elongation factor GreA [Brachyspira murdochii DSM 12563] Length = 154 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 95/150 (63%), Gaps = 1/150 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T +G+DK++ +L + E + I+EAR GDL ENAEY AAKE Q L ++++ Sbjct: 4 PITKEGYDKVKAKLAELKAEFET-LPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + E+ID S++ + + FG V + +KN Y+IVG+ EAD+ ++I +P Sbjct: 63 LEGDLAGCEIIDPSSLDKNTVTFGKRVKVKDKNRNAVFEYRIVGELEADMSKNEITIVTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 IA+ L+ K++GD++++ P G+K EIL++ Sbjct: 123 IAKGLLAKKVGDVVTIKVPAGDKVLEILEI 152 >gi|227486472|ref|ZP_03916788.1| transcription elongation factor [Anaerococcus lactolyticus ATCC 51172] gi|227235653|gb|EEI85668.1| transcription elongation factor [Anaerococcus lactolyticus ATCC 51172] Length = 157 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M +K + +T + +K++ EL + + ++RP + + I AR++GDLSENA+Y AK Q Sbjct: 1 MTEKKEVILTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGE 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++E++I A+ I++ S D + G TV L ++ + Y+IVG E++ G Sbjct: 61 VESRIMKIEDMIRNAKTIEVDENS-DTVGVGNTVCLYDEEFEEDVEYKIVGTAESNPLEG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ A+IG ++ D + V P G+ + I + Sbjct: 120 YISNESPVGEAIIGHKINDRVEVETPNGKMYFVIKNIK 157 >gi|322386974|ref|ZP_08060598.1| transcription elongation factor GreA [Streptococcus cristatus ATCC 51100] gi|321269256|gb|EFX52192.1| transcription elongation factor GreA [Streptococcus cristatus ATCC 51100] Length = 187 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K++QEL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 28 MAEKTYPMTLVEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 87 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I A ++D +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 88 EGQISSLETKIRYAVIVDSDSVAKDEVAIGKTVTIQEVGETEEEVYIIVGSAGADAFAGK 147 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GDI +V P G +IL+V Sbjct: 148 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 184 >gi|319946449|ref|ZP_08020686.1| transcription elongation factor GreA [Streptococcus australis ATCC 700641] gi|319747417|gb|EFV99673.1| transcription elongation factor GreA [Streptococcus australis ATCC 700641] Length = 160 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T K++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKQKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE++D ++ D +A G TV++ E ++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEIGEDEEDVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI ALIGK+ GD +++ P G +IL V Sbjct: 121 ISNESPIGHALIGKKTGDTVTIETPAGSYQVKILNVE 157 >gi|210618382|ref|ZP_03291947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787] gi|210148938|gb|EEA79947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787] Length = 144 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T G +++EL + R + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKTLLTYAGLKALEEELENLKVVRRKEVAVKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNA 143 +S SP+ +ALIGK++GD + V A Sbjct: 121 ISNESPLGKALIGKKVGDKVEVEA 144 >gi|116628860|ref|YP_814032.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|238852826|ref|ZP_04643231.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282852524|ref|ZP_06261866.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|311111317|ref|ZP_07712714.1| transcription elongation factor GreA 1 (Transcript cleavage factor greA 1) [Lactobacillus gasseri MV-22] gi|116094442|gb|ABJ59594.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC 33323] gi|238834520|gb|EEQ26752.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4] gi|282556266|gb|EFB61886.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|311066471|gb|EFQ46811.1| transcription elongation factor GreA 1 (Transcript cleavage factor greA 1) [Lactobacillus gasseri MV-22] Length = 153 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + +E+I I G+ V L+ + D + Y+IVG EAD+ G + Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLAKGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 118 SFDSPLGQALMKQKAGATVTVQAPAGSYDVKIIAV 152 >gi|329117237|ref|ZP_08245954.1| transcription elongation factor GreA [Streptococcus parauberis NCFD 2020] gi|326907642|gb|EGE54556.1| transcription elongation factor GreA [Streptococcus parauberis NCFD 2020] Length = 160 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T D+++ EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTQGEKDQLELELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+I+ ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETKIRFAEIINSDDVAKDEVAIGKTVVVKEVGTNDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA ALIGK+ GDI+ + P EI+ V Sbjct: 121 ISNESPIAHALIGKKKGDIVKIETPAATYDVEIISV 156 >gi|309805958|ref|ZP_07699985.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|309808528|ref|ZP_07702427.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|312871258|ref|ZP_07731356.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|312872694|ref|ZP_07732759.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|325912492|ref|ZP_08174882.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] gi|308167640|gb|EFO69792.1| transcription elongation factor GreA [Lactobacillus iners LactinV 03V1-b] gi|308168356|gb|EFO70475.1| transcription elongation factor GreA [Lactobacillus iners LactinV 01V1-a] gi|311091736|gb|EFQ50115.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2062A-h1] gi|311093272|gb|EFQ51618.1| transcription elongation factor GreA [Lactobacillus iners LEAF 3008A-a] gi|325478165|gb|EGC81287.1| transcription elongation factor GreA [Lactobacillus iners UPII 60-B] Length = 153 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + A+++ + + G+ V + ++ + + Y IVG EADV + Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ AL+ K+ GD++ VNAP G I+ V Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153 >gi|167768162|ref|ZP_02440215.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1] gi|317499617|ref|ZP_07957879.1| transcription elongation factor GreA [Lachnospiraceae bacterium 5_1_63FAA] gi|167709686|gb|EDS20265.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1] gi|291560188|emb|CBL38988.1| transcription elongation factor GreA [butyrate-producing bacterium SSC/2] gi|316893092|gb|EFV15312.1| transcription elongation factor GreA [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G ++ EL+ + R I + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKNILTPDGLKALEDELQELKVVRRKEIAQKIKEAREQGDLSENAEYDAAKDEQRDMEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+E I+ A VID I+ G V L + G + Y IVG EAD+ +S Sbjct: 64 RIEEIEKILKNAVVIDE-KFEKGVISLGCHVLLEDITLGKEVTYHIVGSTEADILQNKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +PI RAL+GK++GD++SV + ++ V Sbjct: 123 NEAPIGRALLGKKIGDVVSVEGINQVNDFRVIDVQ 157 >gi|311743142|ref|ZP_07716950.1| transcription elongation factor GreA [Aeromicrobium marinum DSM 15272] gi|311313822|gb|EFQ83731.1| transcription elongation factor GreA [Aeromicrobium marinum DSM 15272] Length = 175 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D I VT + +D+++ EL + E R I I+ AR GDL EN Y AA+E Q E Sbjct: 15 TDTIWVTQEAYDRLRSELDHLRGEVRSDITSKIAAARDEGDLKENGGYHAAREEQGKTEA 74 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQS 117 R+ +LE+++ RAEV D G + G V++ D +++ + + ++ V Sbjct: 75 RIRQLEDMLRRAEVGDKPADDG-LVEAGMKVTIRFAGDDDTESFLLGSRELLSLDSSVDL 133 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 + S +SP+ A++GK+ GD + P G T E+++ Sbjct: 134 DVYSPTSPLGAAILGKKAGDTATYETPNGRSITVEVVE 171 >gi|154484003|ref|ZP_02026451.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC 27560] gi|149735045|gb|EDM50931.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC 27560] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 81/155 (52%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T G +++ EL + +R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 9 AKKNILTYAGLQELEAELEDLKVNKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 68 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++E I+ EV+ S + +I G + + + + + IVG + + SG +S Sbjct: 69 RIEDIEKILKNVEVVAESDIDDTKINVGCHIIIHDFEYDEDLEFSIVGSTQTNSLSGKIS 128 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ ALIG E+GDI+ V Y++L + Sbjct: 129 NESPLGHALIGHEVGDIVEVEMGDTVSKYKVLDIK 163 >gi|188590574|ref|YP_001920968.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] gi|188500855|gb|ACD53991.1| transcription elongation factor GreA [Clostridium botulinum E3 str. Alaska E43] Length = 155 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID + + + + + D+ +V + D ++ L+SI S + Sbjct: 65 MTMISTATVIDDTEIDKSSLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AL+GK+ G+ + V APG + T +IL++L+ Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVKILEILY 155 >gi|22537752|ref|NP_688603.1| transcription elongation factor GreA [Streptococcus agalactiae 2603V/R] gi|25011701|ref|NP_736096.1| transcription elongation factor GreA [Streptococcus agalactiae NEM316] gi|76787850|ref|YP_330230.1| transcription elongation factor GreA [Streptococcus agalactiae A909] gi|76798458|ref|ZP_00780696.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Streptococcus agalactiae 18RS21] gi|77405807|ref|ZP_00782891.1| transcription elongation factor GreA [Streptococcus agalactiae H36B] gi|77408492|ref|ZP_00785230.1| transcription elongation factor GreA [Streptococcus agalactiae COH1] gi|77411916|ref|ZP_00788247.1| transcription elongation factor GreA [Streptococcus agalactiae CJB111] gi|77414235|ref|ZP_00790397.1| transcription elongation factor GreA [Streptococcus agalactiae 515] gi|81456125|sp|Q8E3U5|GREA_STRA3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|81744339|sp|Q8DY80|GREA_STRA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123601405|sp|Q3JZS3|GREA_STRA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|22534643|gb|AAN00476.1|AE014265_5 transcription elongation factor GreA [Streptococcus agalactiae 2603V/R] gi|24413241|emb|CAD47320.1| Unknown [Streptococcus agalactiae NEM316] gi|76562907|gb|ABA45491.1| transcription elongation factor GreA [Streptococcus agalactiae A909] gi|76586192|gb|EAO62712.1| Transcription elongation factor greA (Transcript cleavage factorgreA) [Streptococcus agalactiae 18RS21] gi|77159724|gb|EAO70873.1| transcription elongation factor GreA [Streptococcus agalactiae 515] gi|77162013|gb|EAO72993.1| transcription elongation factor GreA [Streptococcus agalactiae CJB111] gi|77172934|gb|EAO76065.1| transcription elongation factor GreA [Streptococcus agalactiae COH1] gi|77175594|gb|EAO78379.1| transcription elongation factor GreA [Streptococcus agalactiae H36B] gi|319745513|gb|EFV97815.1| transcription elongation factor GreA [Streptococcus agalactiae ATCC 13813] Length = 160 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T D++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTQVEKDQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVLVQEVGTNDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA ALIGK+ GD+ ++ +P G EI+ V Sbjct: 121 ISNESPIAHALIGKKTGDLATIESPAGSYQVEIISVE 157 >gi|42560844|ref|NP_975295.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400735|sp|Q6MTU9|GREA_MYCMS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|42492340|emb|CAE76937.1| transcription elongation factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321466|gb|ADK70109.1| putative transcription elongation factor GreA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 157 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKHLLKVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S S + G+TV V K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+A+IGK++ + + I + Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157 >gi|300362488|ref|ZP_07058664.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] gi|300353479|gb|EFJ69351.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03] Length = 153 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + +E+I I G+ V L+ + D + Y+IVG EAD+ G + Sbjct: 60 SRLRYLDKQLRYSEIIQKDK--SGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLTKGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152 >gi|288803422|ref|ZP_06408854.1| transcription elongation factor GreA [Prevotella melaninogenica D18] gi|302345970|ref|YP_003814323.1| transcription elongation factor GreA [Prevotella melaninogenica ATCC 25845] gi|288334032|gb|EFC72475.1| transcription elongation factor GreA [Prevotella melaninogenica D18] gi|302149498|gb|ADK95760.1| transcription elongation factor GreA [Prevotella melaninogenica ATCC 25845] Length = 156 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 94/151 (62%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE Sbjct: 3 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P Sbjct: 63 LKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTNAKMKYTIVSETEANLKQNKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G T I ++ Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTITLRIDKIS 153 >gi|284046269|ref|YP_003396609.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] gi|283950490|gb|ADB53234.1| transcription elongation factor GreA [Conexibacter woesei DSM 14684] Length = 154 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +G D ++ EL + R I I AR +GDL ENAEY AAKE Q E Sbjct: 1 MTDGYAITQEGLDALRAELEQLETVARREIAARIRTAREWGDLKENAEYHAAKEDQAHLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L A V + S+ D +AFG+TV + + G Y +VG EA + G + Sbjct: 61 TRILKLRERERNATVTEASS-DVDIVAFGSTVEV--ETGGKNARYTLVGAAEASARDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SI SP+ARALIG G+ + V P G + +++V Sbjct: 118 SIESPVARALIGARAGEDVQVQTPSGARILRVVRV 152 >gi|296122734|ref|YP_003630512.1| transcription elongation factor GreA [Planctomyces limnophilus DSM 3776] gi|296015074|gb|ADG68313.1| transcription elongation factor GreA [Planctomyces limnophilus DSM 3776] Length = 160 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 98/157 (62%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ P++ +G+DK+++E+R + ++ P+I +AI+EARA GDL ENAEY +E Q + Sbjct: 1 MELQPISREGYDKLKEEIRKLEHDDMPKIAEAIAEARAEGDLKENAEYHGQREEQGRLQA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L++ + ++D ST+ +AFG V++ + GD + Y+ VG E D S ++ Sbjct: 61 RINSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMK 120 Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I +SP+A AL+GK++ D +S+ P G YEI ++ Sbjct: 121 ILTTSPLASALLGKKVNDKVSIQVPRGTINYEITEIE 157 >gi|257784990|ref|YP_003180207.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469] gi|257473497|gb|ACV51616.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469] Length = 159 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE Sbjct: 4 TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+ I++ A+V++ + +A G TV L + G Y IVG E + +S Sbjct: 64 RINEIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-GKTTKYVIVGTTETNSLEHKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP ALIG + GD + P G+ K Y I+ + Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGKVKKYTIISIT 158 >gi|88706726|ref|ZP_01104428.1| Transcription elongation factor greB [Congregibacter litoralis KT71] gi|88699047|gb|EAQ96164.1| Transcription elongation factor greB [Congregibacter litoralis KT71] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G +++ EL ++ERP + A+ +A GD SEN +Y K+ + R+ + Sbjct: 15 ITAAGEARLRAELDRLWRQERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +V+ RI FGATV + ++++ + +I+G E + G VSI +PI Sbjct: 75 SKRLEVLQVVREPPTDRTRIFFGATVEVEDQHA-VSRTIRILGPDEFESSRGEVSIDAPI 133 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ARAL+GK +GD +++ +PGG + E+L V ++ Sbjct: 134 ARALLGKSVGDCVNLESPGGLRELEVLAVSYL 165 >gi|284113334|ref|ZP_06386608.1| transcription elongation factor GreA [Candidatus Poribacteria sp. WGA-A3] gi|283829659|gb|EFC33987.1| transcription elongation factor GreA [Candidatus Poribacteria sp. WGA-A3] Length = 132 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 58/130 (44%), Positives = 90/130 (69%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P+ I+ I+EAR +GDL ENAE++AAKE Q + RM+E+E+ + A+VI+ T + + Sbjct: 1 PQNIQDIAEAREHGDLRENAEFKAAKERQQFIDTRMSEIEHKLGDAQVIESGTGPSETVV 60 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FGATV L++ S ++K Y +VG +EAD+++G +S+ SPI RALI +GD++ VN P G Sbjct: 61 FGATVRLLDVESEEQKTYTLVGQEEADLKNGSISVQSPIGRALISHRVGDVVQVNRPAGM 120 Query: 148 KTYEILQVLW 157 YEI ++ + Sbjct: 121 IEYEIQEIFF 130 >gi|18310245|ref|NP_562179.1| transcription elongation factor GreA [Clostridium perfringens str. 13] gi|110801097|ref|YP_695914.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110802369|ref|YP_698592.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|168205506|ref|ZP_02631511.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|168213038|ref|ZP_02638663.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|168217085|ref|ZP_02642710.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] gi|169344009|ref|ZP_02865000.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|182624203|ref|ZP_02951989.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|18144924|dbj|BAB80969.1| transcription elongation factor [Clostridium perfringens str. 13] gi|110675744|gb|ABG84731.1| transcription elongation factor GreA [Clostridium perfringens ATCC 13124] gi|110682870|gb|ABG86240.1| transcription elongation factor GreA [Clostridium perfringens SM101] gi|169297917|gb|EDS80012.1| transcription elongation factor GreA [Clostridium perfringens C str. JGS1495] gi|170663031|gb|EDT15714.1| transcription elongation factor GreA [Clostridium perfringens E str. JGS1987] gi|170715452|gb|EDT27634.1| transcription elongation factor GreA [Clostridium perfringens CPE str. F4969] gi|177910617|gb|EDT72985.1| transcription elongation factor GreA [Clostridium perfringens D str. JGS1721] gi|182380772|gb|EDT78251.1| transcription elongation factor GreA [Clostridium perfringens NCTC 8239] Length = 154 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 83/151 (54%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ Sbjct: 4 YLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I+ A ++D + + + + D+ +V + D+++ +SI S Sbjct: 64 LLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIESD 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+GK++GD++ V APGG T E+L++L Sbjct: 124 LGKALMGKKVGDVVEVEAPGGNYTVEVLEIL 154 >gi|224542870|ref|ZP_03683409.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM 15897] gi|224524200|gb|EEF93305.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM 15897] Length = 162 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M K+ ++ +GF+K++ E ERP +I+ I AR+ GDLSENA+Y AA++ Q E Sbjct: 4 MDKKVQISREGFEKLKAERENLINVERPAVIEEIKLARSQGDLSENADYDAARDKQARIE 63 Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQS 117 R+ ELE ++ A +I + + GATV++++ + + + + I+G E D Sbjct: 64 ERIKELEVMMQNAVIIGSDVKVDTHVVNLGATVTVLDLSEENPEPDTFTILGSTETDPLH 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +S SP+A+AL+ ++GD+++V EI+ + + Sbjct: 124 GKISNESPLAKALMTHKIGDVVTVGV-AKPYDVEIVDIKY 162 >gi|270158321|ref|ZP_06186978.1| transcription elongation factor GreB [Legionella longbeachae D-4968] gi|289163433|ref|YP_003453571.1| transcription elongation factor [Legionella longbeachae NSW150] gi|269990346|gb|EEZ96600.1| transcription elongation factor GreB [Legionella longbeachae D-4968] gi|288856606|emb|CBJ10413.1| transcription elongation factor [Legionella longbeachae NSW150] Length = 181 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T GF +Q ELR ERP I+K +S A + GD SEN +Y K+ + R+ Sbjct: 26 KNYMTPNGFAMLQAELRNLISNERPEIVKVVSWAASNGDRSENGDYIYGKKRLREIDRRI 85 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A+++D + ++ FGATV + +G+ +IVG EAD+ G +S Sbjct: 86 RYLTKRLESAQIVDPKLQVGLTQVFFGATVQYIN-ENGESHCVKIVGLDEADINEGKISW 144 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+A+ L+ ++GD ++ E + + +I Sbjct: 145 VSPLAKTLLKAKVGDHRTLRVGDKECHLTVTHISYI 180 >gi|227508629|ref|ZP_03938678.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191961|gb|EEI72028.1| transcription elongation factor GreA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 155 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+ Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ + D + G V+ + + YQIVG E D+ +G +SI+SP Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I AL+ G+I+++ AP +I ++ Sbjct: 124 ICAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154 >gi|226951512|ref|ZP_03821976.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244] gi|226837748|gb|EEH70131.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244] Length = 158 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRTGHDLLVAELKRLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D ++ FGA V + +G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-EAGEQKILRIVGVDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + V+ P G+K + I + + Sbjct: 120 SIESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156 >gi|322421115|ref|YP_004200338.1| GreA/GreB family elongation factor [Geobacter sp. M18] gi|320127502|gb|ADW15062.1| GreA/GreB family elongation factor [Geobacter sp. M18] Length = 157 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++++G ++Q+ + ++ERPR++K +++A A GD SENAEY +K+ + + L Sbjct: 5 ISAEGRKRLQERYDFLWEKERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ ++ ++FG V+ ++ G ++ YQ+VG E DV G +S+ SP+ Sbjct: 65 GDRLKVLKVV-YPPLNPASVSFGCWVTYEDEEGG-ERCYQLVGPDEFDVSLGKISVDSPV 122 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+GK++ D +++ P G+ IL V Sbjct: 123 GKALLGKKVDDEVTIRRPAGDLAVTILAVT 152 >gi|332665125|ref|YP_004447913.1| transcription elongation factor GreA [Haliscomenobacter hydrossis DSM 1100] gi|332333939|gb|AEE51040.1| transcription elongation factor GreA [Haliscomenobacter hydrossis DSM 1100] Length = 156 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 93/155 (60%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T +GF+++ EL + R +AI+EAR GDLSENAEY AAKE Q L E Sbjct: 1 MTINYLTKEGFERLTGELDDMKTRGRAEAARAIAEAREKGDLSENAEYDAAKEAQGLLEL 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +LE + A V+D S + ++ A V+++ + K YQ+V + EAD+++ VS Sbjct: 61 RINDLEKQLANARVLDASEVDTSKVTVLAKVTIMNTKNKAKITYQLVSESEADLKAKKVS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SSP+ + L+GK +G+ +V P G+ ++I+ + Sbjct: 121 VSSPMGQGLLGKTIGETATVRTPNGDMQFKIVDIS 155 >gi|94984775|ref|YP_604139.1| transcription elongation factor GreA [Deinococcus geothermalis DSM 11300] gi|94555056|gb|ABF44970.1| transcription elongation factor GreA [Deinococcus geothermalis DSM 11300] Length = 156 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 +IP+T +G+DK+++ L + + R +I + + A A GDL E+A Y A+ Q+ NE R+ Sbjct: 5 RIPMTKRGYDKLRETLEYLKTTRREQISEYMGSAIADGDLRESAAYDEARMQQSENEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE+ + RA++I+ G GA V + ++ G+++ +++VG E DV G +S + Sbjct: 65 LELEDQLERAQIIEEDASGG--AGLGAKVKVRDEK-GNERQFELVGTYEVDVLKGKISDA 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI +AL GK G I++V P G +E+L+V + Sbjct: 122 SPIGQALSGKRPGQIVTVQLPKGSAKFEVLEVTY 155 >gi|313665187|ref|YP_004047058.1| transcription elongation factor GreA [Mycoplasma leachii PG50] gi|312949485|gb|ADR24081.1| putative transcription elongation factor GreA [Mycoplasma leachii PG50] Length = 157 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S S + G+TV + K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+A++GK++GD + + I + Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157 >gi|89901919|ref|YP_524390.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] gi|89346656|gb|ABD70859.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118] Length = 187 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G+ +++ EL +RP++++A+ A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITPQGYARLRGELLDLIDNQRPQVVEAVYWAASNGDRSENGDYIYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + A+V D + G ++I FGA V+ VE +G ++ I+G EAD G VS Sbjct: 89 RFLTQRLEIAQVTDPALHHGSEQIFFGAHVTYVEA-AGTARSVTILGIDEADSALGQVSW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIAR L+ +GD + + P G E++ V + Sbjct: 148 VSPIARTLLQARVGDELQLLTPVGRVEIEVIGVDY 182 >gi|83319925|ref|YP_424238.1| transcription elongation factor GreA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123740058|sp|Q2SSM5|GREA_MYCCT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|83283811|gb|ABC01743.1| transcription elongation factor GreA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 157 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S S + G+TV + K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+A++GK++GD + + I + Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157 >gi|288906006|ref|YP_003431228.1| transcription elongation factor [Streptococcus gallolyticus UCN34] gi|306832025|ref|ZP_07465180.1| transcription elongation factor GreA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834163|ref|ZP_07467283.1| transcription elongation factor GreA [Streptococcus bovis ATCC 700338] gi|325978973|ref|YP_004288689.1| transcription elongation factor greA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732732|emb|CBI14306.1| transcription elongation factor [Streptococcus gallolyticus UCN34] gi|304423736|gb|EFM26882.1| transcription elongation factor GreA [Streptococcus bovis ATCC 700338] gi|304425951|gb|EFM29068.1| transcription elongation factor GreA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178901|emb|CBZ48945.1| Transcription elongation factor greA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 160 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG++ LE I AE+ID ++ D +A G TV++ E + DK Y IVG AD+ SG Sbjct: 61 EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVTVEEVGTTDKDVYHIVGAAGADIFSGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GDI+++ +P G +I+ V Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVKIVSVE 157 >gi|169350015|ref|ZP_02866953.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552] gi|169293228|gb|EDS75361.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552] Length = 161 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R Sbjct: 4 EKVLLTQSGLEKLEQERDRLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120 + E++ ++ E+I M + G TV++++ + + ++Y+IVG E D +G + Sbjct: 64 IKEIDYMLQNVEIISEDQMDLKVVKPGTTVTILDLSETDAEPESYKIVGFTETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+A+A+IG ++ +I++V +IL + + Sbjct: 124 SNESPLAKAVIGHDVNEIVTVGV-AEPYDVKILNIEF 159 >gi|302874691|ref|YP_003843324.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|307690697|ref|ZP_07633143.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302577548|gb|ADL51560.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] Length = 154 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KI +T G K++ EL + + +R I +A+ ARA GDLSENA+Y AAK+ Q++ E Sbjct: 1 MSKIQLTEAGKQKLEDELNYLKSVKRVEIKEALKVARAQGDLSENADYSAAKDDQSITET 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+E+I+ AE+I+ ST + + + + + + +V EAD ++ +S Sbjct: 61 RIAEIESILKYAEIIEAST-DANVFDVNKSAKVKFYDFDEIEVVTLVSSVEADAKNMKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SP+ AL E+G +SV +P G E++++L Sbjct: 120 IDSPLGMALHRLEVGKKVSVTSPDGSYDVEVIEIL 154 >gi|319943395|ref|ZP_08017677.1| transcription elongation factor GreB [Lautropia mirabilis ATCC 51599] gi|319743210|gb|EFV95615.1| transcription elongation factor GreB [Lautropia mirabilis ATCC 51599] Length = 186 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ ++ EL ERP +++ +S A + GD SEN +Y K+ + R+ Sbjct: 29 KNYITRAGYQALRDELSHLLDVERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I RAEV++ S G D++ FGATV+ E + G ++ QIVG E D +G +S Sbjct: 89 RFLIRRIDRAEVVEPSAHHGNDQVFFGATVTYSEPD-GTERRVQIVGVDETDPLAGKISW 147 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARALI GD +S+ P G I V + Sbjct: 148 VSPVARALIKAREGDEVSLMTPQGRMELLIESVEY 182 >gi|42518266|ref|NP_964196.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] gi|41582550|gb|AAS08162.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC 533] Length = 153 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + +E+I I G+ V+L+ + + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+ ++ G ++V AP G +I+ V Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIDV 152 >gi|227523817|ref|ZP_03953866.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] gi|227089018|gb|EEI24330.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC 8290] Length = 155 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+ Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +++ + D + G V+ + + YQIVG E D+ G +SI+SP Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDDGKISIASP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I AL+ G+I+++ AP +I ++ Sbjct: 124 IGAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154 >gi|306821055|ref|ZP_07454673.1| transcription elongation factor GreA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550891|gb|EFM38864.1| transcription elongation factor GreA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 165 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I +T +G++ I++EL + R + + EAR++GDLSENAEY AK Q E R Sbjct: 7 NDILLTKEGYENIEKELDELKSVRRKEVSDKLKEARSFGDLSENAEYDEAKNEQAQLEER 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSL---VEKNSGDKKNYQIVGDQEADVQSGL 119 +A+LEN++ +A +I + + + + G V + ++++Y IVG E++ G Sbjct: 67 IAKLENMLRKAVIISETDLKMNIVNLGTQVKVSIKYPDGEVEEEDYTIVGSAESNPAEGK 126 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +ALIG + G I V P G +I+ + Sbjct: 127 ISNDSPIGKALIGAKKGQKIDVQVPDGIAKIKIVSIE 163 >gi|300727402|ref|ZP_07060811.1| transcription elongation factor GreA [Prevotella bryantii B14] gi|299775282|gb|EFI71881.1| transcription elongation factor GreA [Prevotella bryantii B14] Length = 155 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 93/151 (61%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ EL++ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDKLVAELKYLESVERPKASAAIAEAADKGDLSENSEYDAAKENQAHLEAKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I++A+++D+S +S D + TV + + K Y IV + EAD++SG +SI +P Sbjct: 63 IKMTISQAKIVDMSRLSADAVQIMTTVEMTNLGNNAKMKYTIVSESEADLKSGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + P G I ++ Sbjct: 123 IAQGLLNKKVGDTAEIKIPRGTIHLRIDKIS 153 >gi|253699374|ref|YP_003020563.1| GreA/GreB family elongation factor [Geobacter sp. M21] gi|251774224|gb|ACT16805.1| GreA/GreB family elongation factor [Geobacter sp. M21] Length = 158 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++++G ++Q+ + + ERPR++K +++A A GD SENAEY +K+ + + L Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ ++ ++FG V+ ++ G+++ YQ+VG E DV +G +S+ SP+ Sbjct: 66 GDRLKVVKVV-YPPLNPSTVSFGCWVTYEDEE-GEERCYQLVGPDEFDVTAGKISVDSPV 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+G+++ D I++ P G+ I+ + Sbjct: 124 GKALLGRKVDDEITIKRPAGDLAVTIVAIS 153 >gi|322387442|ref|ZP_08061052.1| transcription elongation factor GreA [Streptococcus infantis ATCC 700779] gi|321141971|gb|EFX37466.1| transcription elongation factor GreA [Streptococcus infantis ATCC 700779] Length = 160 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ + +A G TV++ E +K+ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKNEVAIGKTVTIQEVGEDEKEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD++++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKKGDVVTIETPAGSYDVKILKVE 157 >gi|309809127|ref|ZP_07703000.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] gi|308170572|gb|EFO72592.1| transcription elongation factor GreA [Lactobacillus iners SPIN 2503V10-D] Length = 153 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + A+++ + I G+ V + ++ + + Y IVG EADV + Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ AL+ K+ GD++ VNAP G I+ V Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153 >gi|294651152|ref|ZP_06728486.1| transcription elongation factor GreB [Acinetobacter haemolyticus ATCC 19194] gi|292822948|gb|EFF81817.1| transcription elongation factor GreB [Acinetobacter haemolyticus ATCC 19194] Length = 158 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + Sbjct: 1 MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ L + +++D ++ FGA V + +G++K +IVG E D + Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-EAGEQKILRIVGIDEIYDHHPQHI 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI SP+ARAL+ K++ D + V+ P G+K + I + + Sbjct: 120 SIESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156 >gi|251779859|ref|ZP_04822779.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084174|gb|EES50064.1| transcription elongation factor GreA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 155 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 82/151 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID + + + + + D+ +V + D ++ L+SI S + Sbjct: 65 MTMISTATVIDDTEIDKSTLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +AL+GK+ G+ + V APG + T +IL++L+ Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVQILEILY 155 >gi|193216587|ref|YP_001999829.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1] gi|259647648|sp|B3PM73|GREA_MYCA5 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|193001910|gb|ACF07125.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1] Length = 159 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T+ F + Q+ L++ Q+ RP++I+ I EAR GDLSENAEY AA++ Q E Sbjct: 6 EKIYLTADSFKQYQERLQYLQEVLRPQVIEEIKEARNQGDLSENAEYDAARDKQATIENE 65 Query: 63 MAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + E+++I+ E+I + + G+ VS+V N+QIVG + D +G +S Sbjct: 66 ITEIQHILDNYEIIKTQTNRQVSVVRIGSNVSVVSLKDDTVINFQIVGALDTDPFNGKIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SP+A+A+IG++ G+++ V AP + +I+ V Sbjct: 126 NTSPLAKAVIGRKAGEVVEVEAPN-KYQVKIVHV 158 >gi|331703265|ref|YP_004399952.1| transcription elongation factor [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384044|gb|ACU78614.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384876|gb|ACU79445.1| transcription elongation factor GreA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455679|gb|ADH21914.1| transcription elongation factor GreA [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801820|emb|CBW53973.1| Transcription elongation factor [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 157 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T +G ++++ EL++ + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 MSKEIILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +I RA+VID S S + G+TV V K +IVG EAD S L Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+A+IGK++ + + I + Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157 >gi|162147888|ref|YP_001602349.1| transcription elongation factor greB [Gluconacetobacter diazotrophicus PAl 5] gi|161786465|emb|CAP56047.1| putative transcription elongation factor greB [Gluconacetobacter diazotrophicus PAl 5] Length = 199 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ Sbjct: 41 YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 100 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L I +A V+D + + DR+ FGATV+ V ++ IVG E+D+ +G VS++S Sbjct: 101 LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 159 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+G +GD + + P G + EIL++ + Sbjct: 160 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 192 >gi|260893494|ref|YP_003239591.1| transcription elongation factor GreA [Ammonifex degensii KC4] gi|260865635|gb|ACX52741.1| transcription elongation factor GreA [Ammonifex degensii KC4] Length = 159 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K I +T +G ++++EL + R + + I +A A+GD+SENAEY+ AK Q Sbjct: 1 MKEKEIVLTPEGLRRLEEELELLKSVRRREVAERIKQALAFGDISENAEYEDAKNEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE I+ A VID + + + G+TV L + G + Y IVG +EAD + Sbjct: 61 EGRIITLEKILRHARVIDQEEIGTEEVTIGSTVRLKDLADGAEYEYTIVGSEEADPAAHR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ RAL+GK+ GD + V+ P G+ +++IL + Sbjct: 121 ISYESPVGRALLGKKKGDTVDVDVPAGKLSFQILDI 156 >gi|15924600|ref|NP_372134.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu50] gi|15927190|ref|NP_374723.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus N315] gi|21283289|ref|NP_646377.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MW2] gi|49483855|ref|YP_041079.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA252] gi|49486443|ref|YP_043664.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MSSA476] gi|57652001|ref|YP_186505.1| transcription elongation factor [Staphylococcus aureus subsp. aureus COL] gi|82751210|ref|YP_416951.1| transcription elongation factor GreA [Staphylococcus aureus RF122] gi|87161697|ref|YP_494262.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195419|ref|YP_500223.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268091|ref|YP_001247034.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH9] gi|150394159|ref|YP_001316834.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH1] gi|151221723|ref|YP_001332545.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979928|ref|YP_001442187.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu3] gi|161509837|ref|YP_001575496.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141120|ref|ZP_03565613.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315240|ref|ZP_04838453.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733139|ref|ZP_04867304.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TCH130] gi|255006395|ref|ZP_05144996.2| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425734|ref|ZP_05602158.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428395|ref|ZP_05604793.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431033|ref|ZP_05607412.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 68-397] gi|257433719|ref|ZP_05610077.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus E1410] gi|257436634|ref|ZP_05612678.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M876] gi|257793685|ref|ZP_05642664.1| transcription elongation factor greA [Staphylococcus aureus A9781] gi|258411016|ref|ZP_05681296.1| transcription elongation factor GreA [Staphylococcus aureus A9763] gi|258420182|ref|ZP_05683137.1| transcription elongation factor greA [Staphylococcus aureus A9719] gi|258424036|ref|ZP_05686918.1| transcription elongation factor greA [Staphylococcus aureus A9635] gi|258438184|ref|ZP_05689468.1| transcription elongation factor greA [Staphylococcus aureus A9299] gi|258443647|ref|ZP_05691986.1| transcription elongation factor greA [Staphylococcus aureus A8115] gi|258446854|ref|ZP_05695008.1| transcription elongation factor greA [Staphylococcus aureus A6300] gi|258448768|ref|ZP_05696880.1| transcription elongation factor greA [Staphylococcus aureus A6224] gi|258450563|ref|ZP_05698625.1| transcription elongation factor greA [Staphylococcus aureus A5948] gi|258453587|ref|ZP_05701565.1| transcription elongation factor greA [Staphylococcus aureus A5937] gi|262048605|ref|ZP_06021488.1| transcription elongation factor [Staphylococcus aureus D30] gi|262051265|ref|ZP_06023489.1| transcription elongation factor [Staphylococcus aureus 930918-3] gi|269203236|ref|YP_003282505.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ED98] gi|282893113|ref|ZP_06301347.1| transcription elongation factor greA [Staphylococcus aureus A8117] gi|282904191|ref|ZP_06312079.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus C160] gi|282906017|ref|ZP_06313872.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908929|ref|ZP_06316747.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911247|ref|ZP_06319049.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914415|ref|ZP_06322201.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M899] gi|282916879|ref|ZP_06324637.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus D139] gi|282919385|ref|ZP_06327120.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C427] gi|282920157|ref|ZP_06327882.1| transcription elongation factor greA [Staphylococcus aureus A9765] gi|282924710|ref|ZP_06332378.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C101] gi|282928244|ref|ZP_06335849.1| transcription elongation factor greA [Staphylococcus aureus A10102] gi|283770684|ref|ZP_06343576.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus H19] gi|283958371|ref|ZP_06375822.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus A017934/97] gi|284024667|ref|ZP_06379065.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 132] gi|293503490|ref|ZP_06667337.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 58-424] gi|293510507|ref|ZP_06669213.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M809] gi|293531047|ref|ZP_06671729.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M1015] gi|294848639|ref|ZP_06789385.1| transcription elongation factor greA [Staphylococcus aureus A9754] gi|295406732|ref|ZP_06816537.1| transcription elongation factor greA [Staphylococcus aureus A8819] gi|295428187|ref|ZP_06820819.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276729|ref|ZP_06859236.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MR1] gi|297207670|ref|ZP_06924105.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245686|ref|ZP_06929551.1| transcription elongation factor greA [Staphylococcus aureus A8796] gi|297590846|ref|ZP_06949484.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MN8] gi|300911752|ref|ZP_07129195.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH70] gi|304380793|ref|ZP_07363460.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037220|sp|P64284|GREA_STAAW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54037228|sp|P99156|GREA_STAAN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041330|sp|P64283|GREA_STAAM RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56748966|sp|Q6G8V9|GREA_STAAS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|56749020|sp|Q6GG93|GREA_STAAR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71152090|sp|Q5HFF2|GREA_STAAC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123291785|sp|Q2FXW7|GREA_STAA8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123722377|sp|Q2FGB6|GREA_STAA3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|123740964|sp|Q2YT68|GREA_STAAB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200745|sp|A7X319|GREA_STAA1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|172048917|sp|A6QHF1|GREA_STAAE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042249|sp|A6U279|GREA_STAA2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042250|sp|A5ITD5|GREA_STAA9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042251|sp|A8Z4E8|GREA_STAAT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13701408|dbj|BAB42702.1| transcription elongation factor [Staphylococcus aureus subsp. aureus N315] gi|14247381|dbj|BAB57772.1| transcription elongation factor [Staphylococcus aureus subsp. aureus Mu50] gi|21204729|dbj|BAB95425.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MW2] gi|49241984|emb|CAG40681.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49244886|emb|CAG43347.1| transcription elongation factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57286187|gb|AAW38281.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus COL] gi|82656741|emb|CAI81170.1| transcription elongation factor [Staphylococcus aureus RF122] gi|87127671|gb|ABD22185.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202977|gb|ABD30787.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741160|gb|ABQ49458.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH9] gi|149946611|gb|ABR52547.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JH1] gi|150374523|dbj|BAF67783.1| transcription elongation factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156722063|dbj|BAF78480.1| transcription elongation factor [Staphylococcus aureus subsp. aureus Mu3] gi|160368646|gb|ABX29617.1| elongation factor GreA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728895|gb|EES97624.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TCH130] gi|257271428|gb|EEV03574.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275236|gb|EEV06723.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278236|gb|EEV08878.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 68-397] gi|257281812|gb|EEV11949.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus E1410] gi|257283985|gb|EEV14108.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M876] gi|257787657|gb|EEV25997.1| transcription elongation factor greA [Staphylococcus aureus A9781] gi|257840166|gb|EEV64630.1| transcription elongation factor GreA [Staphylococcus aureus A9763] gi|257843893|gb|EEV68287.1| transcription elongation factor greA [Staphylococcus aureus A9719] gi|257845657|gb|EEV69689.1| transcription elongation factor greA [Staphylococcus aureus A9635] gi|257848228|gb|EEV72219.1| transcription elongation factor greA [Staphylococcus aureus A9299] gi|257851053|gb|EEV74996.1| transcription elongation factor greA [Staphylococcus aureus A8115] gi|257854429|gb|EEV77378.1| transcription elongation factor greA [Staphylococcus aureus A6300] gi|257858046|gb|EEV80935.1| transcription elongation factor greA [Staphylococcus aureus A6224] gi|257861721|gb|EEV84520.1| transcription elongation factor greA [Staphylococcus aureus A5948] gi|257864318|gb|EEV87068.1| transcription elongation factor greA [Staphylococcus aureus A5937] gi|259160902|gb|EEW45922.1| transcription elongation factor [Staphylococcus aureus 930918-3] gi|259163252|gb|EEW47811.1| transcription elongation factor [Staphylococcus aureus D30] gi|262075526|gb|ACY11499.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ED98] gi|269941096|emb|CBI49482.1| transcription elongation factor [Staphylococcus aureus subsp. aureus TW20] gi|282313545|gb|EFB43940.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C101] gi|282317195|gb|EFB47569.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus C427] gi|282319366|gb|EFB49718.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus D139] gi|282321596|gb|EFB51921.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M899] gi|282324942|gb|EFB55252.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327193|gb|EFB57488.1| transcription elongation factor GreB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331309|gb|EFB60823.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590051|gb|EFB95133.1| transcription elongation factor greA [Staphylococcus aureus A10102] gi|282594505|gb|EFB99490.1| transcription elongation factor greA [Staphylococcus aureus A9765] gi|282595809|gb|EFC00773.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus C160] gi|282764431|gb|EFC04557.1| transcription elongation factor greA [Staphylococcus aureus A8117] gi|283460831|gb|EFC07921.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus H19] gi|283470887|emb|CAQ50098.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus aureus subsp. aureus ST398] gi|283790520|gb|EFC29337.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817292|gb|ADC37779.1| Transcription elongation factor GreA [Staphylococcus aureus 04-02981] gi|290920315|gb|EFD97381.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus M1015] gi|291095156|gb|EFE25421.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus 58-424] gi|291466871|gb|EFF09391.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus M809] gi|294824665|gb|EFG41088.1| transcription elongation factor greA [Staphylococcus aureus A9754] gi|294968479|gb|EFG44503.1| transcription elongation factor greA [Staphylococcus aureus A8819] gi|295128545|gb|EFG58179.1| transcription elongation factor greA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887687|gb|EFH26585.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177337|gb|EFH36589.1| transcription elongation factor greA [Staphylococcus aureus A8796] gi|297575732|gb|EFH94448.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MN8] gi|298694890|gb|ADI98112.1| transcription elongation factor [Staphylococcus aureus subsp. aureus ED133] gi|300885998|gb|EFK81200.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH70] gi|302333284|gb|ADL23477.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus JKD6159] gi|302751439|gb|ADL65616.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340669|gb|EFM06602.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437922|gb|ADQ76993.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus TCH60] gi|312829997|emb|CBX34839.1| transcription elongation factor greA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315195510|gb|EFU25897.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS00] gi|315198693|gb|EFU29021.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS01] gi|320140503|gb|EFW32357.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144042|gb|EFW35811.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439043|gb|EGA96775.1| transcription elongation factor GreA [Staphylococcus aureus O11] gi|323442814|gb|EGB00439.1| transcription elongation factor GreA [Staphylococcus aureus O46] gi|329314285|gb|AEB88698.1| Transcription elongation factor greA [Staphylococcus aureus subsp. aureus T0131] gi|329727213|gb|EGG63669.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21172] gi|329728459|gb|EGG64896.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21189] gi|329733259|gb|EGG69596.1| transcription elongation factor GreA [Staphylococcus aureus subsp. aureus 21193] Length = 158 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158 >gi|116625760|ref|YP_827916.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus Ellin6076] gi|116228922|gb|ABJ87631.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus Ellin6076] Length = 164 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 88/146 (60%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 K+Q E+ + E + K I +AR +GDL ENAEY AAK+ Q R+ +L++ + + Sbjct: 6 KKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQ 65 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 +ID + + D+ G+TV +++ S + Y +V +EAD +G VS +SPI RAL+G Sbjct: 66 LAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLG 125 Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158 K +GD + V +PGG K EIL++ I Sbjct: 126 KTVGDEVKVMSPGGVKELEILKLTTI 151 >gi|197117113|ref|YP_002137540.1| transcription elongation factor GreA/GreB domain-containing protein [Geobacter bemidjiensis Bem] gi|197086473|gb|ACH37744.1| transcription elongation factor GreA/GreB domain protein [Geobacter bemidjiensis Bem] Length = 158 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++++G ++Q+ + + ERPR++K +++A A GD SENAEY +K+ + + L Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ ++ ++FG VS ++ G+++ YQ+VG E DV +G +S+ SP+ Sbjct: 66 GDRLKVVKVV-YPPLNPSTVSFGCWVSYEDEE-GEERCYQLVGPDEFDVTAGKISVDSPV 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL+G+++ D I++ P G+ T I+ + Sbjct: 124 GKALLGRKVDDEITIKRPAGDLTVTIVAIS 153 >gi|326387218|ref|ZP_08208828.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208399|gb|EGD59206.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 161 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T G ++ ERP+I++ +S A GD SEN +Y ++ + ++ Sbjct: 7 PITPAGMAALRARYDHLLGTERPQIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELSH 66 Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L + A VID +R+ FGATV + +++ ++ +VGD E D GL+ + Sbjct: 67 LARRMKAARVIDPVQQQERERVLFGATVEIADEDDN-RRTLTLVGDDEQDAGKGLIGWGA 125 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIARAL G +GD+ V PGGEK +EI+ + + Sbjct: 126 PIARALRGARVGDLRRVRLPGGEKEWEIMTISY 158 >gi|253732265|ref|ZP_04866430.1| transcription elongation factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724054|gb|EES92783.1| transcription elongation factor [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 158 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNIVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158 >gi|224476708|ref|YP_002634314.1| transcription elongation factor GreA [Staphylococcus carnosus subsp. carnosus TM300] gi|254799567|sp|B9DNJ3|GREA_STACT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222421315|emb|CAL28129.1| putative transcription elongation factor,similar to GreA [Staphylococcus carnosus subsp. carnosus TM300] Length = 160 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ S + + G TV+ +E G+++ YQIVG EAD +G +S Sbjct: 65 IQRIEHMIRNALIIEDS-GDNNVVQIGKTVTFIEIPDGEEEVYQIVGSAEADAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SPIA++LIGK L D + V P G E +I + Sbjct: 124 ESPIAKSLIGKHLDDEVRVPLPNGAEIKVKITNIQ 158 >gi|24380100|ref|NP_722055.1| transcription elongation factor GreA [Streptococcus mutans UA159] gi|290579921|ref|YP_003484313.1| putative transcription elongation factor [Streptococcus mutans NN2025] gi|81450943|sp|Q8DSP7|GREA_STRMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|24378096|gb|AAN59361.1|AE015001_6 putative transcription elongation factor GreA [Streptococcus mutans UA159] gi|254996820|dbj|BAH87421.1| putative transcription elongation factor [Streptococcus mutans NN2025] Length = 160 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T ++++QEL + RP +I+ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MSEKTYPMTLAEKEQLEQELEELKLVRRPEVIERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ +E I AE++D ++ + +A G TV + E + D+ Y IVG ADV +G Sbjct: 61 EGQISSIETKIRYAEIVDSDAVAKNEVAIGKTVIVREVGTNDEDTYSIVGAAGADVFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + + +P G EI++V Sbjct: 121 ISNESPIAQALIGKKTGDKVMIESPAGSYQVEIVKVK 157 >gi|269217202|ref|ZP_06161056.1| transcription elongation factor GreA [Slackia exigua ATCC 700122] gi|269129339|gb|EEZ60424.1| transcription elongation factor GreA [Slackia exigua ATCC 700122] Length = 161 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 4/158 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++I +T +G K+++EL + + E+R + + I AR +GD+SEN+EY AK Q L E Sbjct: 7 MANEIVLTPEGKQKLEEELHFLETEKRAEVGERIRVAREFGDISENSEYDDAKNEQGLME 66 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++ +I++ A +++ S +R+ G+TV++ G ++ + IVG EADV SG + Sbjct: 67 ARIAQINDILSNAVLVEAPKRS-NRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 S SP+ AL+G + GD + P G +I+++ Sbjct: 124 SNESPVGAALLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161 >gi|300855815|ref|YP_003780799.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300435930|gb|ADK15697.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 85/151 (56%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + DK+++EL +R +R I K A A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTQENIDKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L ++I+ A VID+ + I + + D++ +V +AD ++ L+SI Sbjct: 62 QYLLSMISTATVIDVKSADKSVIGVNSKFKIKFVEDEDEEIVSLVTTIDADPENMLISIE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S + +AL+GK++GD + V+AP + T EIL+ Sbjct: 122 SDLGKALVGKKVGDTVEVDAPSEKYTVEILE 152 >gi|306829823|ref|ZP_07463010.1| transcription elongation factor GreA [Streptococcus mitis ATCC 6249] gi|304427834|gb|EFM30927.1| transcription elongation factor GreA [Streptococcus mitis ATCC 6249] Length = 160 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVALDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYQVKILKVE 157 >gi|261749563|ref|YP_003257249.1| transcription elongation factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497656|gb|ACX84106.1| transcription elongation factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 162 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G K+QQE+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+ Sbjct: 8 YITKEGLKKLQQEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAK 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A +ID S ++ R++ +TV + G ++ Y +V + EAD++SG +SI++P Sbjct: 68 LKKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTP 127 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 I+ L+GK++G I + P YEIL++ + Sbjct: 128 ISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160 >gi|167756790|ref|ZP_02428917.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402] gi|237734508|ref|ZP_04564989.1| transcription elongation factor greA [Mollicutes bacterium D7] gi|167702965|gb|EDS17544.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402] gi|229382328|gb|EEO32419.1| transcription elongation factor greA [Coprobacillus sp. D7] Length = 161 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R Sbjct: 4 EKVLLTQSGVEKLEQERDNLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120 + E++ ++ AEVI M + G TV++++ + + ++YQIVG E D +G + Sbjct: 64 IKEIDYMLQNAEVISEEQMDLKVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+A+A++G + +I++V +I+ + + Sbjct: 124 SNESPLAKAVLGHGVNEIVTVGV-ADPYDVKIVNIEF 159 >gi|309775361|ref|ZP_07670366.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 3_1_53] gi|308916878|gb|EFP62613.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 3_1_53] Length = 159 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 91/154 (59%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63 Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + +LE +I AE+I D + + I+ G+TV++ + ++ +++ Y IVG EAD +G + Sbjct: 64 IRDLEAMIANAEIISGDKKSTNKKTISLGSTVTIQDLSTNEEETYTIVGSIEADPLNGKL 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S +P+A +L+ ++GD++ + +++ Sbjct: 124 SNITPLATSLMDHKVGDVVEIELAEEPYQVKVID 157 >gi|295425713|ref|ZP_06818400.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] gi|295064729|gb|EFG55650.1| transcription elongation factor GreA [Lactobacillus amylolyticus DSM 11664] Length = 153 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ ++ +RPR IK + +AR+ GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKKIEDEIARLKK-DRPRRIKILQQARSMGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ + ++ G+TV L + + YQIVG EAD+ G Sbjct: 60 SRLRYLGKQLKYAEVIEAK--NYGKVNMGSTVVLKFDDDEKTEEYQIVGRMEADLAKGKT 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + SP+ +A++ ++ G ++V+AP G+ + I++V Sbjct: 118 AFDSPLGQAIMKQQAGSTVTVSAPAGDYSVTIVEVK 153 >gi|168209613|ref|ZP_02635238.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] gi|170712210|gb|EDT24392.1| transcription elongation factor GreA [Clostridium perfringens B str. ATCC 3626] Length = 154 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 82/151 (54%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ Sbjct: 4 YLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +I+ A ++D + + + + D+ +V + D+++ +SI S Sbjct: 64 LLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIESD 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+GK +GD++ V APGG T E+L++L Sbjct: 124 LGKALMGKNVGDVVEVEAPGGNYTVEVLEIL 154 >gi|319935513|ref|ZP_08009948.1| transcription elongation factor [Coprobacillus sp. 29_1] gi|319809544|gb|EFW05961.1| transcription elongation factor [Coprobacillus sp. 29_1] Length = 161 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T G +K+++E ERP++I+ + AR+ GDLSENA+Y +A++ Q E R Sbjct: 4 DAVLLTQSGVEKLKKEREQLINIERPKVIEELQLARSQGDLSENADYDSARDKQAHIESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSGLV 120 + E++ ++ ++ID S M GATV++++ + + +++ IVG E D +G + Sbjct: 64 IKEIDQMLLHVQIIDESQMDSAVAKPGATVTILDLSEEGAEPESFTIVGTFETDPLNGKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S SP+A+A++ + +I+SV +IL++ +I Sbjct: 124 SNESPLAKAILEHGVNEIVSVGV-AEPYEVKILKIEYI 160 >gi|307706224|ref|ZP_07643041.1| transcription elongation factor greA [Streptococcus mitis SK321] gi|307708401|ref|ZP_07644867.1| transcription elongation factor GreA [Streptococcus mitis NCTC 12261] gi|307615500|gb|EFN94707.1| transcription elongation factor GreA [Streptococcus mitis NCTC 12261] gi|307618414|gb|EFN97564.1| transcription elongation factor greA [Streptococcus mitis SK321] Length = 160 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|293365798|ref|ZP_06612504.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|307703334|ref|ZP_07640278.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|291315731|gb|EFE56178.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] gi|307623110|gb|EFO02103.1| transcription elongation factor GreA [Streptococcus oralis ATCC 35037] Length = 160 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI RALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYEVKILKVE 157 >gi|307704459|ref|ZP_07641369.1| transcription elongation factor greA [Streptococcus mitis SK597] gi|307621979|gb|EFO01006.1| transcription elongation factor greA [Streptococcus mitis SK597] Length = 160 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|255523780|ref|ZP_05390745.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255512483|gb|EET88758.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 154 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 85/153 (55%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + DK+++EL +R +R +I K A A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTQENIDKLKEELDYRMTVKRAQIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A V+D + I + + + D++ +V +AD ++ L+S+ Sbjct: 62 QYLLTMISTAIVVDDKSQDKSVIGVNSKFKIKFVDDEDEEVVSLVTTVDADPENMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+ K+ GDI+ VNAP T EIL++L Sbjct: 122 SDLGKALMSKKAGDIVEVNAPSENYTVEILEIL 154 >gi|251811021|ref|ZP_04825494.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060] gi|293366432|ref|ZP_06613110.1| transcription elongation factor GreA [Staphylococcus epidermidis M23864:W2(grey)] gi|251805439|gb|EES58096.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060] gi|291319466|gb|EFE59834.1| transcription elongation factor GreA [Staphylococcus epidermidis M23864:W2(grey)] Length = 161 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 97/155 (62%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 8 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S Sbjct: 68 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+++ Sbjct: 127 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161 >gi|303236653|ref|ZP_07323234.1| transcription elongation factor GreA [Prevotella disiens FB035-09AN] gi|302483157|gb|EFL46171.1| transcription elongation factor GreA [Prevotella disiens FB035-09AN] Length = 156 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 92/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+D + EL+ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+ E Sbjct: 3 YMSQEGYDNLVAELQHLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQAHLETRINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I +A+++D+S +S + + +TV + + K Y IV + EA+++ G +SI +P Sbjct: 63 MKMTIAQAKIVDMSRLSNEAVQIMSTVEMTNLGNNSKMKYTIVSESEANLKLGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G+ + ++ Sbjct: 123 IAQGLLNKKVGDEVEIEIPRGKIKLRVDKIS 153 >gi|72160851|ref|YP_288508.1| transcription elongation factor GreA [Thermobifida fusca YX] gi|71914583|gb|AAZ54485.1| prokaryotic transcription elongation factor GreA [Thermobifida fusca YX] Length = 167 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ EL + R I I AR GDL EN Y AAKE Q E R+A Sbjct: 11 WLTQEAYDRLTAELEYLSGPGRIEIADRIEAAREEGDLRENGGYHAAKEEQGKIEARIAH 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++I++ A V G + G TV++ + ++ + + +E+ + S SP Sbjct: 71 LQSILSNARVGQAPQREG-VVGPGMTVTIKFEGDEEEMTFLLASREESGAPIDVYSPKSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154 + A+ GK++G+ ++ P G++ T EIL Sbjct: 130 LGEAINGKKVGEKVTYKLPSGKEATVEILD 159 >gi|227894423|ref|ZP_04012228.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM 16047] gi|227863793|gb|EEJ71214.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM 16047] Length = 153 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ T ++ G +V L + D + Y+IVG EAD+ +G + Sbjct: 60 SRLRYLGKQLKYAEIV--KTKDDGKVDLGKSVVLKFDDDDDTEQYKIVGRMEADLAAGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G ++V AP GE I++V Sbjct: 118 SFDSPLGQAIMKKEAGTTVAVEAPAGEYKVTIVEVK 153 >gi|239637583|ref|ZP_04678555.1| transcription elongation factor GreA [Staphylococcus warneri L37603] gi|239596801|gb|EEQ79326.1| transcription elongation factor GreA [Staphylococcus warneri L37603] gi|330685471|gb|EGG97125.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU121] Length = 158 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ T + + G TV+ VE ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMIRNALIIE-DTGDNNTVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMASALIGKSLDDEVRVPLPNGGEMNVKIVDIK 158 >gi|322377004|ref|ZP_08051497.1| transcription elongation factor GreA [Streptococcus sp. M334] gi|321282811|gb|EFX59818.1| transcription elongation factor GreA [Streptococcus sp. M334] Length = 160 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157 >gi|312194554|ref|YP_004014615.1| GreA/GreB family elongation factor [Frankia sp. EuI1c] gi|311225890|gb|ADP78745.1| GreA/GreB family elongation factor [Frankia sp. EuI1c] Length = 160 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R + I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTTTGRTELANKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A+V + + S G V + + + + + I ++ + Sbjct: 61 ARIRQLNDLLRDAKVGEAAA-STGVAGPGTVVEVRFQGDKETEKFLIGSREDHSAPIDVF 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 S +SP+ A+ G + GD ++ P G + EI+ V Sbjct: 120 SPASPLGGAVTGHKAGDKVTYTLPNGRNASVEIVSV 155 >gi|312874044|ref|ZP_07734079.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|329920936|ref|ZP_08277485.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] gi|311090384|gb|EFQ48793.1| transcription elongation factor GreA [Lactobacillus iners LEAF 2052A-d] gi|328935501|gb|EGG31972.1| transcription elongation factor GreA [Lactobacillus iners SPIN 1401G] Length = 153 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + A+++ + I G+ V + ++ + + Y IVG EADV + Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGMIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ AL+ K+ GD++ VNAP G I+ V Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153 >gi|157150808|ref|YP_001449835.1| transcription elongation factor GreA [Streptococcus gordonii str. Challis substr. CH1] gi|262282147|ref|ZP_06059916.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA] gi|189042252|sp|A8AVM5|GREA_STRGC RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|157075602|gb|ABV10285.1| transcription elongation factor greA [Streptococcus gordonii str. Challis substr. CH1] gi|262262601|gb|EEY81298.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA] Length = 160 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE++D ++ D + G TV++ E +K+ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAKDEVGIGKTVTIQEVGETEKEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GDI +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKKGDIATVETPVGSYDVKILKVE 157 >gi|282878396|ref|ZP_06287184.1| putative transcription elongation factor GreA [Prevotella buccalis ATCC 35310] gi|281299474|gb|EFA91855.1| putative transcription elongation factor GreA [Prevotella buccalis ATCC 35310] Length = 155 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDNLVAELTRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D+S +S D + + V + + K Y IV + EAD+++G +SI +P Sbjct: 63 MKLTIAEAKIVDVSRLSADTVQILSKVEMTNMKTKSKMVYTIVSESEADLKAGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K+ GD + + P G I ++ Sbjct: 123 IAQGLLNKKEGDEVDIKIPAGTIKLRIDKIT 153 >gi|228475181|ref|ZP_04059907.1| transcription elongation factor GreA [Staphylococcus hominis SK119] gi|314936274|ref|ZP_07843621.1| transcription elongation factor GreA [Staphylococcus hominis subsp. hominis C80] gi|228270792|gb|EEK12194.1| transcription elongation factor GreA [Staphylococcus hominis SK119] gi|313654893|gb|EFS18638.1| transcription elongation factor GreA [Staphylococcus hominis subsp. hominis C80] Length = 158 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ + I G TV+ VE ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMLRYALIIE-DNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMAKALIGKNLNDEVRVPLPNGGEMKVKIVDIK 158 >gi|254283435|ref|ZP_04958403.1| transcription elongation factor GreB [gamma proteobacterium NOR51-B] gi|219679638|gb|EED35987.1| transcription elongation factor GreB [gamma proteobacterium NOR51-B] Length = 168 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++ EL+ +EERP + A+ A GD SEN +Y K+ + R+ Sbjct: 14 YITPEGEAALRAELQALWKEERPVVTAAVQAAAGNGDRSENGDYIYGKKRLREIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+ + FGA V L + G++ +++VG E D+Q+G +S SP Sbjct: 74 LRKRLEELTVVRDPPSDRGKAYFGAWVDLENPD-GERVTWRVVGPDEFDLQAGKLSCDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK + I++++P G++ + +L V + Sbjct: 133 LGRALLGKPIDSEITIDSPSGDQYWYLLDVRY 164 >gi|223044081|ref|ZP_03614120.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus capitis SK14] gi|314933776|ref|ZP_07841141.1| transcription elongation factor GreA [Staphylococcus caprae C87] gi|222442475|gb|EEE48581.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Staphylococcus capitis SK14] gi|313653926|gb|EFS17683.1| transcription elongation factor GreA [Staphylococcus caprae C87] Length = 158 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ VE ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEMNVKIVDIK 158 >gi|270292312|ref|ZP_06198523.1| transcription elongation factor GreA [Streptococcus sp. M143] gi|315613482|ref|ZP_07888390.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC 49296] gi|322375565|ref|ZP_08050077.1| transcription elongation factor GreA [Streptococcus sp. C300] gi|331266043|ref|YP_004325673.1| transcription elongation factor GreA [Streptococcus oralis Uo5] gi|270278291|gb|EFA24137.1| transcription elongation factor GreA [Streptococcus sp. M143] gi|315314478|gb|EFU62522.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC 49296] gi|321279273|gb|EFX56314.1| transcription elongation factor GreA [Streptococcus sp. C300] gi|326682715|emb|CBZ00332.1| transcription elongation factor GreA [Streptococcus oralis Uo5] Length = 160 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI RALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|288928758|ref|ZP_06422604.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317 str. F0108] gi|288329742|gb|EFC68327.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317 str. F0108] Length = 154 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 90/151 (59%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G++K+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYEKLVAELRRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A+++D S +S D + + V + + K Y IV + EA+++ G ++I++P Sbjct: 63 LKVAINEAKIVDTSRLSSDAVQILSKVQMTNLTTKAKMTYTIVSESEANLKEGKIAITTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K+ GD + + P G I ++ Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153 >gi|160915319|ref|ZP_02077532.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991] gi|158433118|gb|EDP11407.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991] Length = 159 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I + EARA GDLSENA+Y AA+E Q E R Sbjct: 5 EKFLVTKEGLDELVKEHDHLIHVVRDEVIIELQEARAQGDLSENADYDAAREHQAQVEAR 64 Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + +LE +I +AE+I+ + G+TV++++ +S +++ Y IVG EAD +G +S Sbjct: 65 IRDLEAMIAKAEIIEGDKKTKKKAVTLGSTVTILDMDSNEEETYTIVGSIEADPLNGKLS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+A AL+ + DI+ V+ +IL + Sbjct: 125 NITPLAVALMDHKTNDIVEVSGAETPYEVKILSIK 159 >gi|116330420|ref|YP_800138.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124109|gb|ABJ75380.1| greA transcription elongation factor-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 927 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 86/151 (56%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + + Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A++L+GK++GD +N G E Y +L++ Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917 >gi|116328972|ref|YP_798692.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121716|gb|ABJ79759.1| greA transcription elongation factor-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 927 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 86/151 (56%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + + Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+A++L+GK++GD +N G E Y +L++ Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917 >gi|259500870|ref|ZP_05743772.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|302190677|ref|ZP_07266931.1| transcription elongation factor GreA [Lactobacillus iners AB-1] gi|309803670|ref|ZP_07697760.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|309805761|ref|ZP_07699798.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|312874748|ref|ZP_07734767.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|315654050|ref|ZP_07906966.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|325912329|ref|ZP_08174726.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners UPII 143-D] gi|259167564|gb|EEW52059.1| transcription elongation factor GreA [Lactobacillus iners DSM 13335] gi|308164268|gb|EFO66525.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308164881|gb|EFO67127.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|311089493|gb|EFQ47918.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|315488746|gb|EFU78392.1| transcription elongation factor GreA [Lactobacillus iners ATCC 55195] gi|325475988|gb|EGC79157.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus iners UPII 143-D] Length = 153 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK + Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + A+++ + I G+ V + ++ + + Y IVG EADV + Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ AL+ K+ GD++ VNAP G I+ V Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153 >gi|226355589|ref|YP_002785329.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226317579|gb|ACO45575.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 156 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M P +T +G+DK+++ L + R +I + + +A A GDL E+A Y A+ Q+ N Sbjct: 1 MTKPRPTMTQRGYDKLKETLDHLKTTRREQISEYMGQAIADGDLRESAAYDEARMQQSEN 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A++E + A +I + S GA + + + + G + +++VG E D+ G Sbjct: 61 EARIADIEYQLEHALII--AEDSAGGAGLGARIRVKD-DKGKEHQFELVGTYEVDILKGK 117 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SPI +AL GK G+ ++V P G +EIL V + Sbjct: 118 ISDASPIGKALAGKHAGETVNVQLPKGTSRFEILAVEY 155 >gi|167745534|ref|ZP_02417661.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662] gi|317472902|ref|ZP_07932208.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA] gi|167655255|gb|EDR99384.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662] gi|316899622|gb|EFV21630.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G ++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E Sbjct: 4 AKKNILTQEGLKTLEDELQDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE I+ AEVID I+ G V L + ++ Y IVG EAD+ + +S Sbjct: 64 RIEELEQILKNAEVIDE-EFQHGVISLGCLVKLEDLTFKEEVTYHIVGSTEADILNNKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +PI +AL+G ++GD++ V G Y++L V Sbjct: 123 NEAPIGKALLGAKIGDVVEVEGVGQVNQYKVLDVK 157 >gi|281425411|ref|ZP_06256324.1| transcription elongation factor GreA [Prevotella oris F0302] gi|299141561|ref|ZP_07034697.1| transcription elongation factor GreA [Prevotella oris C735] gi|281400404|gb|EFB31235.1| transcription elongation factor GreA [Prevotella oris F0302] gi|298576897|gb|EFI48767.1| transcription elongation factor GreA [Prevotella oris C735] Length = 156 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+D + EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYDNLVAELQRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I A+++D+S +S D + + V + + K Y IV + EA+++ G +SI +P Sbjct: 63 MKVSIAEAKIVDLSRLSTDAVQIMSKVEMTNMGTKAKMVYTIVSESEANLKQGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ + G+I+ V P G I ++ Sbjct: 123 IAQGLLNHKEGEIVEVKIPRGTIKLRIDKIS 153 >gi|27468211|ref|NP_764848.1| transcription elongation factor [Staphylococcus epidermidis ATCC 12228] gi|57867085|ref|YP_188750.1| transcription elongation factor GreA [Staphylococcus epidermidis RP62A] gi|282875965|ref|ZP_06284832.1| transcription elongation factor GreA [Staphylococcus epidermidis SK135] gi|32129576|sp|Q8CSB3|GREA_STAES RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71152091|sp|Q5HNU0|GREA_STAEQ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|27315757|gb|AAO04892.1|AE016748_126 transcription elongation factor [Staphylococcus epidermidis ATCC 12228] gi|57637743|gb|AAW54531.1| transcription elongation factor GreA [Staphylococcus epidermidis RP62A] gi|281294990|gb|EFA87517.1| transcription elongation factor GreA [Staphylococcus epidermidis SK135] gi|329724691|gb|EGG61197.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU144] gi|329735364|gb|EGG71656.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU045] gi|329737227|gb|EGG73481.1| transcription elongation factor GreA [Staphylococcus epidermidis VCU028] Length = 158 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 97/155 (62%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+++ Sbjct: 124 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158 >gi|323340754|ref|ZP_08081006.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC 25644] gi|323091877|gb|EFZ34497.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 105/158 (66%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ P+T +G +K+++EL + +R II+ I AR++GDLSEN+EY+AAK Q++ Sbjct: 1 MAEEKTFPMTLEGKEKLEKELEELKTTKRAEIIERIKIARSFGDLSENSEYEAAKNEQSI 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 EGR+ E+ N++ AE+ID ++ D +A G TV+ E++ + + YQIVG E+D +G Sbjct: 61 LEGRIKEVTNMLNHAEIIDNGAIAEDEVAIGKTVTFQEEDD-EPETYQIVGAAESDPFNG 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ L+G ++G+ ++V PGG+ +I+ V Sbjct: 120 KISNESPIAKGLVGHKVGETVTVETPGGDMQVKIISVE 157 >gi|269837141|ref|YP_003319369.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM 20745] gi|269786404|gb|ACZ38547.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM 20745] Length = 156 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%) Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + P +T++G +++EL + + P + I E GD+S+N+EY+ KE Sbjct: 1 MASERPVTLTAEGKADLERELHHLRTVKLPDVTARIQELSMDGDVSDNSEYEDTKEELIQ 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ E+EN++ R VI G + G+ V++V+ +G + + +V +EA+ G Sbjct: 61 LEARIREIENLLRRVRVIAPGKSDG-VVKLGSRVTIVD-ETGQAETWILVSPEEANTLQG 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL+ K +GD + V APGGE ++ I +V Sbjct: 119 KISTESPVGAALLDKRVGDSVVVRAPGGETSFTIEKVE 156 >gi|70726310|ref|YP_253224.1| transcription elongation factor GreA [Staphylococcus haemolyticus JCSC1435] gi|123762316|sp|Q4L6V7|GREA_STAHJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|68447034|dbj|BAE04618.1| transcription elongation factor [Staphylococcus haemolyticus JCSC1435] Length = 158 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++++++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEQLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ T + + G TV+ +E ++++YQIVG EAD +G +S Sbjct: 65 IQRIEHMLRYALIIE-DTGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMAKALIGKSLKDEVRVPLPNGGEINVKIVNIK 158 >gi|221194505|ref|ZP_03567562.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626] gi|221185409|gb|EEE17799.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626] Length = 159 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE Sbjct: 4 TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+ I++ A+V++ +A G TV L + G K Y IVG E + +S Sbjct: 64 RINEIRQILSVAKVVEGDKKRKITVAIGTTVELEDAK-GKKAKYVIVGTTETNSLEHKIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SP ALIG + GD + P G K Y I + Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGNVKKYTITAIT 158 >gi|296271052|ref|YP_003653684.1| transcription elongation factor GreA [Thermobispora bispora DSM 43833] gi|296093839|gb|ADG89791.1| transcription elongation factor GreA [Thermobispora bispora DSM 43833] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 4/159 (2%) Query: 3 DKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ +T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E Sbjct: 7 DKVTWLTQEAYDRLKAEYEYLTGPARAEIAKKIEAAREEGDLRENGGYHAAKDEQGKLEA 66 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ L I+ A+V G + G TV++ ++ + + +E+ V + S Sbjct: 67 RIYRLREILENAKVGQPPADDG-IVEPGMTVTVRFDGEDEEVTFLLASREESGVPIDVYS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQ-VLWI 158 +SP+ +A+ GK++G+ + P G+ ++ EIL+ V ++ Sbjct: 126 PNSPLGKAITGKKVGERATFTLPNGKQRSVEILEAVPYV 164 >gi|307298990|ref|ZP_07578792.1| GreA/GreB family elongation factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306915415|gb|EFN45800.1| GreA/GreB family elongation factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 157 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K I +T +GF+ +++EL +++ I + I EAR GDLSEN+EY AK Q Sbjct: 1 MKKKVIYLTQEGFNGMKEELESLRKKLMYDIAERIKEARELGDLSENSEYDEAKNEQGRI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ +LE I+ AE+I+ + G V L+ ++ +K ++IV QEA++ G Sbjct: 61 DSRIKQLEEILNNAEIIE-DDGDLSTVKLGYVVELLNIDTNEKSQFRIVNAQEANIFEGK 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPI R ++ ++ +++ V P G Y+IL + Sbjct: 120 ISSDSPIGRGVLTHKVNEVVRVKTPAGWAKYKILTI 155 >gi|322391681|ref|ZP_08065149.1| transcription elongation factor GreA [Streptococcus peroris ATCC 700780] gi|321145492|gb|EFX40885.1| transcription elongation factor GreA [Streptococcus peroris ATCC 700780] Length = 160 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GDI +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 157 >gi|242373910|ref|ZP_04819484.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1] gi|242348464|gb|EES40066.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1] Length = 158 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A ALIGK L D + V P GGE +I+ + Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEINVKIVDIK 158 >gi|158312680|ref|YP_001505188.1| transcription elongation factor GreA [Frankia sp. EAN1pec] gi|158108085|gb|ABW10282.1| transcription elongation factor GreA [Frankia sp. EAN1pec] Length = 161 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +++++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A V S+ + G V + + + + I ++ + Sbjct: 61 ARIRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSASIEVF 120 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 S +SP+ A+ G + GD + P G T EI+ V Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156 >gi|319942272|ref|ZP_08016587.1| transcription elongation factor GreB [Sutterella wadsworthensis 3_1_45B] gi|319804145|gb|EFW01045.1| transcription elongation factor GreB [Sutterella wadsworthensis 3_1_45B] Length = 185 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + ++ E ERP ++ ++ A + GD SEN +Y K+ + R+ Sbjct: 19 KNYMTPACYRRLLDEREHLVNVERPDVVNVVAWAASNGDRSENGDYLYGKKRLREIDRRI 78 Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L I AEV+D + D++ FGAT L G+++ +IVG EAD + G VS Sbjct: 79 RFLNKRIESAEVVDPAVHPETDQVFFGAT-VLYCNQRGEERKIRIVGIDEADAEHGDVSW 137 Query: 123 SSPIARALIGKELGDIISVNA------PGGEKTYEILQVLW 157 SPIAR + + GD + + P G T EIL+V + Sbjct: 138 ISPIARVFLRRHEGDEVKLPTPATSTHPAGVDTLEILEVTY 178 >gi|307706015|ref|ZP_07642838.1| transcription elongation factor greA [Streptococcus mitis SK564] gi|307620434|gb|EFN99547.1| transcription elongation factor greA [Streptococcus mitis SK564] Length = 160 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|330998037|ref|ZP_08321868.1| transcription elongation factor GreA [Paraprevotella xylaniphila YIT 11841] gi|329569338|gb|EGG51118.1| transcription elongation factor GreA [Paraprevotella xylaniphila YIT 11841] Length = 155 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 92/152 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ + Sbjct: 3 YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +P Sbjct: 63 LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMTYTIVSETEANLKEGKISVQTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G EI + + Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154 >gi|309798572|ref|ZP_07692847.1| transcription elongation factor GreA [Streptococcus infantis SK1302] gi|308117808|gb|EFO55209.1| transcription elongation factor GreA [Streptococcus infantis SK1302] Length = 160 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDDEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|187933763|ref|YP_001884424.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] gi|238691601|sp|B2TI25|GREA_CLOBB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|187721916|gb|ACD23137.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] Length = 160 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 89/154 (57%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG+ Sbjct: 5 KQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGK 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S Sbjct: 65 ILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISN 124 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+GK++GD++ V P G +EIL + Sbjct: 125 ESPVGNALVGKKIGDVVEVVVPDGVSKFEILDIK 158 >gi|294507431|ref|YP_003571489.1| transcription elongation factor greA [Salinibacter ruber M8] gi|294343759|emb|CBH24537.1| Transcription elongation factor greA [Salinibacter ruber M8] Length = 178 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 97/154 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + +T +G +++++EL + EER RI I+EARA GDLSENAEY AAKE Q E R Sbjct: 24 ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 83 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++E+ I RA ++D ST+ + + V++ ++GD++ + +V ++EA++ +S+ Sbjct: 84 IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 143 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI L+ +E GD +S++ P G ++I + Sbjct: 144 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDIS 177 >gi|182418041|ref|ZP_02949346.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237666078|ref|ZP_04526066.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378096|gb|EDT75632.1| transcription elongation factor GreA [Clostridium butyricum 5521] gi|237659025|gb|EEP56577.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 154 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+Q EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTQENMKKLQDELEYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID + + + + +++ +V + D ++ ++SI S + Sbjct: 65 MTMISTATVIDDEDQDKSVLGINSKAKVKFIDDDEEEIITLVTTMDLDPENMMISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ALIGK+ G+I+ V APG + + EIL++L Sbjct: 125 GKALIGKKAGEIVEVEAPGDKYSVEILEIL 154 >gi|50842047|ref|YP_055274.1| transcription elongation factor GreA [Propionibacterium acnes KPA171202] gi|289425793|ref|ZP_06427547.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes SK187] gi|289426784|ref|ZP_06428512.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J165] gi|295130130|ref|YP_003580793.1| transcription elongation factor GreA [Propionibacterium acnes SK137] gi|50839649|gb|AAT82316.1| transcription elongation factor GreA [Propionibacterium acnes KPA171202] gi|289153736|gb|EFD02443.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes SK187] gi|289160110|gb|EFD08286.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J165] gi|291375127|gb|ADD98981.1| transcription elongation factor GreA [Propionibacterium acnes SK137] gi|313764010|gb|EFS35374.1| transcription elongation factor GreA [Propionibacterium acnes HL013PA1] gi|313771459|gb|EFS37425.1| transcription elongation factor GreA [Propionibacterium acnes HL074PA1] gi|313791667|gb|EFS39785.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA1] gi|313802247|gb|EFS43473.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA2] gi|313808119|gb|EFS46593.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA2] gi|313811414|gb|EFS49128.1| transcription elongation factor GreA [Propionibacterium acnes HL083PA1] gi|313812597|gb|EFS50311.1| transcription elongation factor GreA [Propionibacterium acnes HL025PA1] gi|313814863|gb|EFS52577.1| transcription elongation factor GreA [Propionibacterium acnes HL059PA1] gi|313818886|gb|EFS56600.1| transcription elongation factor GreA [Propionibacterium acnes HL046PA2] gi|313820713|gb|EFS58427.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA1] gi|313822520|gb|EFS60234.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA2] gi|313825684|gb|EFS63398.1| transcription elongation factor GreA [Propionibacterium acnes HL063PA1] gi|313828026|gb|EFS65740.1| transcription elongation factor GreA [Propionibacterium acnes HL063PA2] gi|313830831|gb|EFS68545.1| transcription elongation factor GreA [Propionibacterium acnes HL007PA1] gi|313833259|gb|EFS70973.1| transcription elongation factor GreA [Propionibacterium acnes HL056PA1] gi|313839015|gb|EFS76729.1| transcription elongation factor GreA [Propionibacterium acnes HL086PA1] gi|314915042|gb|EFS78873.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA4] gi|314918627|gb|EFS82458.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA1] gi|314920435|gb|EFS84266.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA3] gi|314925628|gb|EFS89459.1| transcription elongation factor GreA [Propionibacterium acnes HL036PA3] gi|314932109|gb|EFS95940.1| transcription elongation factor GreA [Propionibacterium acnes HL067PA1] gi|314954625|gb|EFS99031.1| transcription elongation factor GreA [Propionibacterium acnes HL027PA1] gi|314958576|gb|EFT02678.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA1] gi|314959820|gb|EFT03922.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA2] gi|314962393|gb|EFT06494.1| transcription elongation factor GreA [Propionibacterium acnes HL082PA1] gi|314968336|gb|EFT12435.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA1] gi|314973719|gb|EFT17815.1| transcription elongation factor GreA [Propionibacterium acnes HL053PA1] gi|314976366|gb|EFT20461.1| transcription elongation factor GreA [Propionibacterium acnes HL045PA1] gi|314979203|gb|EFT23297.1| transcription elongation factor GreA [Propionibacterium acnes HL072PA2] gi|314983351|gb|EFT27443.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA1] gi|314986758|gb|EFT30850.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA2] gi|314989499|gb|EFT33590.1| transcription elongation factor GreA [Propionibacterium acnes HL005PA3] gi|315077480|gb|EFT49540.1| transcription elongation factor GreA [Propionibacterium acnes HL053PA2] gi|315080223|gb|EFT52199.1| transcription elongation factor GreA [Propionibacterium acnes HL078PA1] gi|315084105|gb|EFT56081.1| transcription elongation factor GreA [Propionibacterium acnes HL027PA2] gi|315085307|gb|EFT57283.1| transcription elongation factor GreA [Propionibacterium acnes HL002PA3] gi|315089078|gb|EFT61054.1| transcription elongation factor GreA [Propionibacterium acnes HL072PA1] gi|315096494|gb|EFT68470.1| transcription elongation factor GreA [Propionibacterium acnes HL038PA1] gi|315098901|gb|EFT70877.1| transcription elongation factor GreA [Propionibacterium acnes HL059PA2] gi|315100859|gb|EFT72835.1| transcription elongation factor GreA [Propionibacterium acnes HL046PA1] gi|315107203|gb|EFT79179.1| transcription elongation factor GreA [Propionibacterium acnes HL030PA1] gi|315108077|gb|EFT80053.1| transcription elongation factor GreA [Propionibacterium acnes HL030PA2] gi|327326744|gb|EGE68527.1| transcription elongation factor GreA [Propionibacterium acnes HL096PA2] gi|327330559|gb|EGE72306.1| transcription elongation factor GreA [Propionibacterium acnes HL096PA3] gi|327331070|gb|EGE72810.1| transcription elongation factor GreA [Propionibacterium acnes HL097PA1] gi|327443055|gb|EGE89709.1| transcription elongation factor GreA [Propionibacterium acnes HL043PA1] gi|327445178|gb|EGE91832.1| transcription elongation factor GreA [Propionibacterium acnes HL043PA2] gi|327446896|gb|EGE93550.1| transcription elongation factor GreA [Propionibacterium acnes HL013PA2] gi|327450159|gb|EGE96813.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA3] gi|327455114|gb|EGF01769.1| transcription elongation factor GreA [Propionibacterium acnes HL092PA1] gi|327455284|gb|EGF01939.1| transcription elongation factor GreA [Propionibacterium acnes HL083PA2] gi|328752572|gb|EGF66188.1| transcription elongation factor GreA [Propionibacterium acnes HL020PA1] gi|328752825|gb|EGF66441.1| transcription elongation factor GreA [Propionibacterium acnes HL087PA1] gi|328759252|gb|EGF72868.1| transcription elongation factor GreA [Propionibacterium acnes HL025PA2] gi|328760261|gb|EGF73834.1| transcription elongation factor GreA [Propionibacterium acnes HL099PA1] gi|332674970|gb|AEE71786.1| transcription elongation factor GreA [Propionibacterium acnes 266] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTAIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 + S SP+ A++G G+ AP G+ IL V Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164 >gi|313890846|ref|ZP_07824470.1| transcription elongation factor GreA [Streptococcus pseudoporcinus SPIN 20026] gi|313120744|gb|EFR43859.1| transcription elongation factor GreA [Streptococcus pseudoporcinus SPIN 20026] Length = 160 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTELEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + +P EI+ V Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157 >gi|217976361|ref|YP_002360508.1| transcription elongation factor GreB [Methylocella silvestris BL2] gi|217501737|gb|ACK49146.1| transcription elongation factor GreB [Methylocella silvestris BL2] Length = 181 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 2/155 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T +G ++Q E + ERP+I++ ++ A GD SEN +Y K + RM Sbjct: 28 KNYITPEGLRRMQDEFDRLHRIERPKIVETVTWAAGNGDRSENGDYIYGKRRLREIDRRM 87 Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D + + DR+ FGA V + + K +IVG EA + VS Sbjct: 88 RFLRKRMEIAEVVDPARQTNRDRVFFGAKVEYRNARN-EMKTLRIVGVDEARSELSEVSW 146 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIA++L+ E GD++ V P G + EI+++ + Sbjct: 147 ISPIAKSLLKAEEGDVVEVKTPKGTERIEIVKISY 181 >gi|195978755|ref|YP_002123999.1| transcription elongation factor GreA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867928|ref|YP_002743876.1| transcription elongation factor [Streptococcus equi subsp. zooepidemicus] gi|225871158|ref|YP_002747105.1| transcription elongation factor [Streptococcus equi subsp. equi 4047] gi|195975460|gb|ACG62986.1| transcription elongation factor GreA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700562|emb|CAW95060.1| transcription elongation factor [Streptococcus equi subsp. equi 4047] gi|225701204|emb|CAW98132.1| transcription elongation factor [Streptococcus equi subsp. zooepidemicus] Length = 176 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 1/156 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T+ +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 17 MAEKTYPMTAAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 76 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + Y IVG AD+ SG Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTQTTDTYHIVGAAGADIFSGK 136 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SPIA+ALIGK+ GD + + +P I+ V Sbjct: 137 ISNESPIAQALIGKKTGDKVKIESPAATYEVTIISV 172 >gi|116516490|ref|YP_816807.1| transcription elongation factor GreA [Streptococcus pneumoniae D39] gi|148984861|ref|ZP_01818114.1| transcription elongation factor GreA [Streptococcus pneumoniae SP3-BS71] gi|148992595|ref|ZP_01822263.1| transcription elongation factor GreA [Streptococcus pneumoniae SP9-BS68] gi|148997422|ref|ZP_01825027.1| transcription elongation factor GreA [Streptococcus pneumoniae SP11-BS70] gi|149003267|ref|ZP_01828163.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS69] gi|149007576|ref|ZP_01831211.1| transcription elongation factor GreA [Streptococcus pneumoniae SP18-BS74] gi|149011752|ref|ZP_01832948.1| transcription elongation factor GreA [Streptococcus pneumoniae SP19-BS75] gi|149021786|ref|ZP_01835793.1| transcription elongation factor GreA [Streptococcus pneumoniae SP23-BS72] gi|168484934|ref|ZP_02709879.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1873-00] gi|168487712|ref|ZP_02712220.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1087-00] gi|168488822|ref|ZP_02713021.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae SP195] gi|168491591|ref|ZP_02715734.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC0288-04] gi|168493418|ref|ZP_02717561.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC3059-06] gi|168577325|ref|ZP_02723096.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae MLV-016] gi|194397327|ref|YP_002038148.1| transcription elongation factor GreA [Streptococcus pneumoniae G54] gi|221232229|ref|YP_002511382.1| transcription elongation factor [Streptococcus pneumoniae ATCC 700669] gi|225854961|ref|YP_002736473.1| transcription elongation factor GreA [Streptococcus pneumoniae JJA] gi|225857142|ref|YP_002738653.1| transcription elongation factor GreA [Streptococcus pneumoniae P1031] gi|225859274|ref|YP_002740784.1| transcription elongation factor GreA [Streptococcus pneumoniae 70585] gi|225861350|ref|YP_002742859.1| transcription elongation factor GreA [Streptococcus pneumoniae Taiwan19F-14] gi|237650199|ref|ZP_04524451.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI 1974] gi|237820918|ref|ZP_04596763.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI 1974M2] gi|298230257|ref|ZP_06963938.1| transcription elongation factor GreA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254453|ref|ZP_06978039.1| transcription elongation factor GreA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503253|ref|YP_003725193.1| transcription elongation factor GreA [Streptococcus pneumoniae TCH8431/19A] gi|303255302|ref|ZP_07341372.1| transcription elongation factor GreA [Streptococcus pneumoniae BS455] gi|303260142|ref|ZP_07346114.1| transcription elongation factor GreA [Streptococcus pneumoniae SP-BS293] gi|303262532|ref|ZP_07348473.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS292] gi|303264934|ref|ZP_07350849.1| transcription elongation factor GreA [Streptococcus pneumoniae BS397] gi|303267244|ref|ZP_07353108.1| transcription elongation factor GreA [Streptococcus pneumoniae BS457] gi|303269554|ref|ZP_07355317.1| transcription elongation factor GreA [Streptococcus pneumoniae BS458] gi|307068161|ref|YP_003877127.1| transcription elongation factor [Streptococcus pneumoniae AP200] gi|307127722|ref|YP_003879753.1| transcription elongation factor GreA [Streptococcus pneumoniae 670-6B] gi|73621019|sp|Q8DP42|GREA_STRR6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|122277695|sp|Q04HS9|GREA_STRP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238690838|sp|B5E681|GREA_STRP4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799568|sp|C1C8A8|GREA_STRP7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799569|sp|B8ZLB8|GREA_STRPJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799571|sp|C1CFA2|GREA_STRZJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799572|sp|C1CLL5|GREA_STRZP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799573|sp|C1CSD7|GREA_STRZT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|116077066|gb|ABJ54786.1| transcription elongation factor GreA [Streptococcus pneumoniae D39] gi|147756477|gb|EDK63518.1| transcription elongation factor GreA [Streptococcus pneumoniae SP11-BS70] gi|147758727|gb|EDK65724.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS69] gi|147760935|gb|EDK67905.1| transcription elongation factor GreA [Streptococcus pneumoniae SP18-BS74] gi|147764183|gb|EDK71115.1| transcription elongation factor GreA [Streptococcus pneumoniae SP19-BS75] gi|147922883|gb|EDK73999.1| transcription elongation factor GreA [Streptococcus pneumoniae SP3-BS71] gi|147928612|gb|EDK79626.1| transcription elongation factor GreA [Streptococcus pneumoniae SP9-BS68] gi|147930022|gb|EDK81009.1| transcription elongation factor GreA [Streptococcus pneumoniae SP23-BS72] gi|172041918|gb|EDT49964.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1873-00] gi|183569530|gb|EDT90058.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC1087-00] gi|183572632|gb|EDT93160.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae SP195] gi|183574144|gb|EDT94672.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC0288-04] gi|183576363|gb|EDT96891.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae CDC3059-06] gi|183577158|gb|EDT97686.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae MLV-016] gi|194356994|gb|ACF55442.1| transcription elongation factor GreA [Streptococcus pneumoniae G54] gi|220674690|emb|CAR69263.1| transcription elongation factor [Streptococcus pneumoniae ATCC 700669] gi|225720296|gb|ACO16150.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae 70585] gi|225722497|gb|ACO18350.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae JJA] gi|225724300|gb|ACO20152.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae P1031] gi|225726751|gb|ACO22602.1| transcription elongation factor GreA (Transcript cleavage factor greA)(General stress protein 20M) (GSP20M) [Streptococcus pneumoniae Taiwan19F-14] gi|298238848|gb|ADI69979.1| transcription elongation factor GreA [Streptococcus pneumoniae TCH8431/19A] gi|301794529|emb|CBW36971.1| transcription elongation factor [Streptococcus pneumoniae INV104] gi|301800352|emb|CBW32982.1| transcription elongation factor [Streptococcus pneumoniae OXC141] gi|301802237|emb|CBW34988.1| transcription elongation factor [Streptococcus pneumoniae INV200] gi|302597670|gb|EFL64746.1| transcription elongation factor GreA [Streptococcus pneumoniae BS455] gi|302636249|gb|EFL66743.1| transcription elongation factor GreA [Streptococcus pneumoniae SP14-BS292] gi|302638639|gb|EFL69102.1| transcription elongation factor GreA [Streptococcus pneumoniae SP-BS293] gi|302640898|gb|EFL71282.1| transcription elongation factor GreA [Streptococcus pneumoniae BS458] gi|302643209|gb|EFL73492.1| transcription elongation factor GreA [Streptococcus pneumoniae BS457] gi|302645453|gb|EFL75685.1| transcription elongation factor GreA [Streptococcus pneumoniae BS397] gi|306409698|gb|ADM85125.1| Transcription elongation factor [Streptococcus pneumoniae AP200] gi|306484784|gb|ADM91653.1| transcription elongation factor GreA [Streptococcus pneumoniae 670-6B] gi|327389702|gb|EGE88047.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA04375] gi|332072310|gb|EGI82793.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA17570] gi|332073853|gb|EGI84331.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA41301] gi|332074270|gb|EGI84747.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA17545] gi|332199561|gb|EGJ13636.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA41317] gi|332200079|gb|EGJ14152.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA47368] gi|332200957|gb|EGJ15028.1| transcription elongation factor GreA domain protein [Streptococcus pneumoniae GA47901] Length = 160 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC 49540] gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC 49540] Length = 172 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +I+QE+ Q +RP I + ARA GDLSEN EY AK E R+ Sbjct: 17 KMTPTGYHEIEQEIEKLQA-QRPAKIAQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE+I + I G TV+L + ++ NY IVG QEAD+Q +S SP Sbjct: 76 LNKQLQYAEIIKPT--DSQTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+ +++G +SV AP +IL V Sbjct: 134 LGQALLHQKVGQTVSVQAPQSTYQVKILAVR 164 >gi|25453004|sp|Q98Q16|GREA_MYCPU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA Length = 157 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T + K ++E ERP +I I EAR GDLSENAEY AA+E Q E R Sbjct: 5 NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S Sbjct: 65 ITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A+++IG GD++ ++AP + T +IL V Sbjct: 123 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 154 >gi|289643503|ref|ZP_06475621.1| transcription elongation factor GreA [Frankia symbiont of Datisca glomerata] gi|289506687|gb|EFD27668.1| transcription elongation factor GreA [Frankia symbiont of Datisca glomerata] Length = 160 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D++++EL R I I AR GDL EN Y AAKE Q E Sbjct: 1 MSQQTWLTQEAYDRLREELDHLTGTGRVEIANKIEAAREEGDLKENGGYHAAKEEQGKLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A V G G V + + + + I ++ + Sbjct: 61 SRIRQLTDLLRDARVGQAPQFDG-AAGPGTVVEVRFPGDDETERFLIGSREDHSTSLEVY 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 S SP+ A+ G GD ++ P G T I+ V Sbjct: 120 SAQSPLGGAVSGHRAGDTVTYTLPNGRSATVRIVTVE 156 >gi|223986210|ref|ZP_03636228.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM 12042] gi|223961824|gb|EEF66318.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM 12042] Length = 156 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI VT +G +++++E R +I+ + ARA GDLSENA+Y AA++ Q E R Sbjct: 4 DKIYVTQEGLEELKKEQENLIHVVRQEVIEDLKAARAQGDLSENADYDAARDRQAQVEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE ++ E+ID S G+TV + E ++ + IVG EAD +G +S Sbjct: 64 IRELEVMLNNIEIIDDKQGSVRVAKIGSTVKIEELDTHQIDEFTIVGSVEADPLNGKLSN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+A A++ ++G + V +IL++ Sbjct: 124 VTPLAEAILEHKVGQTVEVLV-DEPYQVKILEIR 156 >gi|257457224|ref|ZP_05622399.1| transcript cleavage factor/unknown domain fusion protein [Treponema vincentii ATCC 35580] gi|257445375|gb|EEV20443.1| transcript cleavage factor/unknown domain fusion protein [Treponema vincentii ATCC 35580] Length = 892 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 92/150 (61%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTSK ++ ++EL+ + E PR K + A + GDL EN+EY+AAKE QN ++ L Sbjct: 739 VTSKMLEEKKKELQRLIEVEIPRNSKEVGFALSLGDLRENSEYKAAKEEQNRLNNTVSRL 798 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + RA+V D +T++ R+ FG V+L + S +K+ Y I+G E+D ++G++S SP+ Sbjct: 799 QEELERAQVFDPTTITTTRVGFGTVVTLEKPGSNEKETYTILGPWESDPENGVISYMSPL 858 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L+ ++G+ +S EKTY+IL + Sbjct: 859 GTNLLNHKVGETLSFTVNEEEKTYKILDIS 888 >gi|15903412|ref|NP_358962.1| transcription elongation factor GreA [Streptococcus pneumoniae R6] gi|182684472|ref|YP_001836219.1| transcription elongation factor GreA [Streptococcus pneumoniae CGSP14] gi|15459017|gb|AAL00173.1| Transcription elongation factor GreA [Streptococcus pneumoniae R6] gi|182629806|gb|ACB90754.1| transcription elongation factor GreA [Streptococcus pneumoniae CGSP14] Length = 163 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 4 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 63 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 64 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 123 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 124 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 160 >gi|307565015|ref|ZP_07627532.1| putative transcription elongation factor GreA [Prevotella amnii CRIS 21A-A] gi|307346328|gb|EFN91648.1| putative transcription elongation factor GreA [Prevotella amnii CRIS 21A-A] Length = 156 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 92/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E Sbjct: 3 YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ + A+++D S +S + + +TV + ++ K Y IV + EA+++ G +SI +P Sbjct: 63 MKKTLAEAKIVDTSRLSTEAVQILSTVEMTNIDNQTKMTYTIVSETEANIKQGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GDI + P G I ++ Sbjct: 123 IAQGLLNKKVGDIAEITIPRGTIKLRIDKIS 153 >gi|222152570|ref|YP_002561745.1| transcription elongation factor GreA [Streptococcus uberis 0140J] gi|254799570|sp|B9DTR1|GREA_STRU0 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|222113381|emb|CAR41021.1| transcription elongation factor [Streptococcus uberis 0140J] Length = 160 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTKAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETQIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGSAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GDI + +P EI+ V Sbjct: 121 ISNESPIAQALIGKKKGDIADIVSPATTYQVEIISVE 157 >gi|320335243|ref|YP_004171954.1| transcription elongation factor GreA [Deinococcus maricopensis DSM 21211] gi|319756532|gb|ADV68289.1| transcription elongation factor GreA [Deinococcus maricopensis DSM 21211] Length = 156 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T KG+DK+++ L + Q R +I + + A A GD+ E+A Y A+ Q+ NE R Sbjct: 4 EKITMTRKGYDKLRETLEYLQTTRREQISEYMGSALADGDIRESAAYDEARMQQSENEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ ++RA++++ + +G I GA V + + G++++ +IVG EAD G +S Sbjct: 64 ILELEDQLSRAQIVEEGSQTG--IGLGAKVRVKDAK-GNERDIEIVGTYEADALKGKISD 120 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ +AL G GD++ VN P G++ + ++ V + Sbjct: 121 HSPLGQALAGHGTGDMVVVNLPKGQQKFTVISVKY 155 >gi|295106038|emb|CBL03581.1| transcription elongation factor GreA [Gordonibacter pamelaeae 7-10-1-b] Length = 156 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R Sbjct: 4 DNFILTQEGKDKLEEELHYLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE+ I++ A V++ S ++ G+ V++ G ++ + IVG E+D +G +S Sbjct: 64 IAEISRILSEATVVNTPKRS-SKVNIGSMVTV--DMGGKERVFTIVGGAESDAAAGKISN 120 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ AL+G + GD + P G + + IL++ Sbjct: 121 ESPVGAALLGHKKGDKVETTGPTGRDISMVILKIEH 156 >gi|294631104|ref|ZP_06709664.1| transcription elongation factor GreA [Streptomyces sp. e14] gi|292834437|gb|EFF92786.1| transcription elongation factor GreA [Streptomyces sp. e14] Length = 166 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + + +A G V++ + + D + + + A S S Sbjct: 70 LTQLLENAKVGEAPASTDGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQS 129 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ +IG ++G+ P G+K + IL+ Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVTILK 160 >gi|282859825|ref|ZP_06268919.1| putative transcription elongation factor GreA [Prevotella bivia JCVIHMP010] gi|282587445|gb|EFB92656.1| putative transcription elongation factor GreA [Prevotella bivia JCVIHMP010] Length = 156 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 92/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E Sbjct: 3 YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ + A+++D S +S D + +TV + ++ K Y IV + EA+++ G +SI +P Sbjct: 63 MKMTLAEAKIVDTSRLSTDAVQIMSTVEMTNVDNQTKMKYTIVSETEANIKQGKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD+ + P G I ++ Sbjct: 123 IAQGLLNKKVGDVAEITIPRGTIKLRIDKIS 153 >gi|255281437|ref|ZP_05345992.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] gi|255267925|gb|EET61130.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] Length = 159 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 81/154 (52%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T G ++ E+ + R + I EAR GDLSENAEY AAK+ Q E R Sbjct: 4 KKNLLTYSGLKALEDEMHDLKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E I+ AEV+ + ++I G TV L ++ ++ YQIVG EA+ G +S Sbjct: 64 IEEIEKILKNAEVVVEDDVDLNKINVGCTVKLFDEEYEEEIEYQIVGSTEANSLMGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +ALIG +G I V G Y +L + Sbjct: 124 ESPVGKALIGASIGQEIEVETQVGVCKYRVLGIQ 157 >gi|125718595|ref|YP_001035728.1| transcription elongation factor GreA [Streptococcus sanguinis SK36] gi|323351003|ref|ZP_08086660.1| transcription elongation factor GreA [Streptococcus sanguinis VMC66] gi|166200977|sp|A3CPS3|GREA_STRSV RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|125498512|gb|ABN45178.1| Transcription elongation factor GreA, putative [Streptococcus sanguinis SK36] gi|322122727|gb|EFX94436.1| transcription elongation factor GreA [Streptococcus sanguinis VMC66] gi|324991292|gb|EGC23225.1| transcription elongation factor GreA [Streptococcus sanguinis SK353] gi|324993649|gb|EGC25568.1| transcription elongation factor GreA [Streptococcus sanguinis SK405] gi|324995039|gb|EGC26952.1| transcription elongation factor GreA [Streptococcus sanguinis SK678] gi|325687131|gb|EGD29154.1| transcription elongation factor GreA [Streptococcus sanguinis SK72] gi|325690939|gb|EGD32939.1| transcription elongation factor GreA [Streptococcus sanguinis SK115] gi|325695125|gb|EGD37027.1| transcription elongation factor GreA [Streptococcus sanguinis SK150] gi|327462918|gb|EGF09239.1| transcription elongation factor GreA [Streptococcus sanguinis SK1] gi|327470408|gb|EGF15864.1| transcription elongation factor GreA [Streptococcus sanguinis SK330] gi|327474522|gb|EGF19927.1| transcription elongation factor GreA [Streptococcus sanguinis SK408] gi|327490078|gb|EGF21866.1| transcription elongation factor GreA [Streptococcus sanguinis SK1058] gi|332359138|gb|EGJ36959.1| transcription elongation factor GreA [Streptococcus sanguinis SK49] gi|332367391|gb|EGJ45124.1| transcription elongation factor GreA [Streptococcus sanguinis SK1059] Length = 160 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157 >gi|260910637|ref|ZP_05917297.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472 str. F0295] gi|260635237|gb|EEX53267.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472 str. F0295] Length = 154 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 91/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G++K+ ELR + ERP+ AI++AR GDLSEN+EY AAKE Q E ++ + Sbjct: 3 YMSQEGYEKLVAELRRLESIERPKASAAIADARDKGDLSENSEYDAAKEAQAHLEDKINK 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A+++D S +S D + + V + + K +Y IV + EA+++ G ++I++P Sbjct: 63 LKVAINEAKIVDTSRLSTDAVQILSKVDMTNLTTKAKMSYTIVSESEANLKEGKIAITTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K+ GD + + P G I ++ Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153 >gi|323465752|gb|ADX69439.1| Transcription elongation factor [Lactobacillus helveticus H10] Length = 153 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYKQIEDEIVRLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ T ++ +G TV L + + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDWGKTVVLKFDDDDETEEYKIVGHMEADLADGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ +E G + +V AP GE I++V Sbjct: 118 SFDSPLGQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153 >gi|251781820|ref|YP_002996122.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390449|dbj|BAH80908.1| transcription elongation factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411166|gb|EFY02074.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126633|gb|ADX23930.1| transcription elongation factor GreA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTLTEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + + +P EI+ V Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157 >gi|146319370|ref|YP_001199082.1| transcription elongation factor GreA [Streptococcus suis 05ZYH33] gi|146321576|ref|YP_001201287.1| transcription elongation factor GreA [Streptococcus suis 98HAH33] gi|253752398|ref|YP_003025539.1| transcription elongation factor [Streptococcus suis SC84] gi|253754224|ref|YP_003027365.1| transcription elongation factor [Streptococcus suis P1/7] gi|253756158|ref|YP_003029298.1| transcription elongation factor [Streptococcus suis BM407] gi|166200976|sp|A4W3E8|GREA_STRS2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166201074|sp|A4VX43|GREA_STRSY RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|145690176|gb|ABP90682.1| Transcription elongation factor [Streptococcus suis 05ZYH33] gi|145692382|gb|ABP92887.1| Transcription elongation factor [Streptococcus suis 98HAH33] gi|251816687|emb|CAZ52328.1| transcription elongation factor [Streptococcus suis SC84] gi|251818622|emb|CAZ56456.1| transcription elongation factor [Streptococcus suis BM407] gi|251820470|emb|CAR47194.1| transcription elongation factor [Streptococcus suis P1/7] gi|319758803|gb|ADV70745.1| transcription elongation factor GreA [Streptococcus suis JS14] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP I++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ +E I AE+++ ++ D +A G TV++ E +++ Y IVG ADV + Sbjct: 61 EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADVFANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI ALIGK+ GD+ ++ P G +IL+V Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157 >gi|116333642|ref|YP_795169.1| transcription elongation factor [Lactobacillus brevis ATCC 367] gi|116098989|gb|ABJ64138.1| transcription elongation factor GreA [Lactobacillus brevis ATCC 367] Length = 132 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 +RP++I I AR+YGDLSEN+EY++AK+ Q++ E R++ +E ++ A++ID D Sbjct: 2 VQRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKD 61 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 I G V+ E + + + Y IVG EAD SG +S SPIA+ L+G +G+ ++ P Sbjct: 62 EITVGKKVTFQE-DDDEPEEYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTP 120 Query: 145 GGEKTYEILQV 155 GG+ T +++ V Sbjct: 121 GGDMTVKVIAV 131 >gi|223933721|ref|ZP_03625695.1| transcription elongation factor GreA [Streptococcus suis 89/1591] gi|302024344|ref|ZP_07249555.1| transcription elongation factor GreA [Streptococcus suis 05HAS68] gi|330833338|ref|YP_004402163.1| transcription elongation factor [Streptococcus suis ST3] gi|223897602|gb|EEF63989.1| transcription elongation factor GreA [Streptococcus suis 89/1591] gi|292559001|gb|ADE32002.1| Prokaryotic transcription elongation factor GreA [Streptococcus suis GZ1] gi|329307561|gb|AEB81977.1| transcription elongation factor [Streptococcus suis ST3] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP I++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ +E I AE+++ ++ D +A G TV++ E +++ Y IVG AD + Sbjct: 61 EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADAFANK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI ALIGK+ GD+ ++ P G +IL+V Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157 >gi|313837032|gb|EFS74746.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA2] gi|314929380|gb|EFS93211.1| transcription elongation factor GreA [Propionibacterium acnes HL044PA1] gi|314971536|gb|EFT15634.1| transcription elongation factor GreA [Propionibacterium acnes HL037PA3] gi|328907910|gb|EGG27672.1| transcription elongation factor GreA [Propionibacterium sp. P08] Length = 168 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + + R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGKGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDIFLLGSRQVMGLDDSVDI 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 + S SP+ A++G G+ AP G+ IL V Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYKAPNGKTIKVTILDVE 164 >gi|209542505|ref|YP_002274734.1| transcription elongation factor GreB [Gluconacetobacter diazotrophicus PAl 5] gi|209530182|gb|ACI50119.1| transcription elongation factor GreB [Gluconacetobacter diazotrophicus PAl 5] Length = 180 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ Sbjct: 22 YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 81 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L I +A V+D + + DR+ FGATV+ V ++ IVG E+D+ +G VS++S Sbjct: 82 LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 140 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+G +GD + + P G + EIL++ + Sbjct: 141 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 173 >gi|139438508|ref|ZP_01772024.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC 25986] gi|133776047|gb|EBA39867.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC 25986] Length = 156 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T++G K+ +EL WR+ + I++ I EARA+GDLSEN+EY AAK+ Q N Sbjct: 3 ASQIVLTAEGRQKLVEELAWREGDYAKEIVEDIKEARAFGDLSENSEYDAAKDKQAQNAA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE++ I+ A+V +T ++ G+TVSL++ N G+ +VG E + +S Sbjct: 63 RIAEIQAILANAQV--AATTGDLTVSIGSTVSLIDPN-GEVMEVTLVGTTETNSLEHKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155 SP+ A+IG GD + V P G+ + Y I ++ Sbjct: 120 NESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKI 154 >gi|15829024|ref|NP_326384.1| transcription elongation factor GreA [Mycoplasma pulmonis UAB CTIP] gi|14089968|emb|CAC13726.1| TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR GREA) [Mycoplasma pulmonis] Length = 164 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T + K ++E ERP +I I EAR GDLSENAEY AA+E Q E R Sbjct: 12 NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 71 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S Sbjct: 72 ITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A+++IG GD++ ++AP + T +IL V Sbjct: 130 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 161 >gi|293364014|ref|ZP_06610750.1| putative transcription elongation factor GreA [Mycoplasma alligatoris A21JP2] gi|292552504|gb|EFF41278.1| putative transcription elongation factor GreA [Mycoplasma alligatoris A21JP2] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 3/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K + E ERP + A+ EARA GDLSENAEY AA++ Q EGR Sbjct: 8 EKIYLAKETLEKYKNEYDHLVNVERPSVQAALKEARAQGDLSENAEYDAARDRQGTIEGR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE I+ RAE+I ST +I G+T++ + +K I+G +A+ +S Sbjct: 68 ISELEAILDRAEII--STTLDGKIGIGSTITYFSELDKEKHKVTIMGSHDANPFENKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A A++ + GD I V+AP + EIL ++ Sbjct: 126 ESPLAVAMLDAKKGDKIEVDAPV-KYFIEILDIV 158 >gi|260593365|ref|ZP_05858823.1| transcription elongation factor GreA [Prevotella veroralis F0319] gi|260534641|gb|EEX17258.1| transcription elongation factor GreA [Prevotella veroralis F0319] Length = 156 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 93/151 (61%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE Sbjct: 3 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ + +A+++D+S +S + + +TV + + K Y IV + EA+++ +SI +P Sbjct: 63 MKMTVAQAKIVDVSRLSTEAVQIMSTVEMTNVKTKAKMKYTIVSETEANLKQNKISIKTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++GD + + P G I ++ Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTIKLRIDKIS 153 >gi|332358236|gb|EGJ36064.1| transcription elongation factor GreA [Streptococcus sanguinis SK355] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEIGESEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157 >gi|15901363|ref|NP_345967.1| transcription elongation factor GreA [Streptococcus pneumoniae TIGR4] gi|111658360|ref|ZP_01409047.1| hypothetical protein SpneT_02000439 [Streptococcus pneumoniae TIGR4] gi|148988561|ref|ZP_01819994.1| transcription elongation factor GreA [Streptococcus pneumoniae SP6-BS73] gi|25453002|sp|Q97PT2|GREA_STRPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|14973006|gb|AAK75607.1| transcription elongation factor GreA [Streptococcus pneumoniae TIGR4] gi|147925762|gb|EDK76837.1| transcription elongation factor GreA [Streptococcus pneumoniae SP6-BS73] Length = 160 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFVGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|210632436|ref|ZP_03297364.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279] gi|210159531|gb|EEA90502.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N Sbjct: 3 ASQIVLTAEGRKKLEEELAYLEGEKAKEIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+ + A+ D S ++ G+ V+LV+ G+ ++ IVG E +V +S Sbjct: 63 RIAEIRATLANAQ--DAVAGSNMIVSIGSNVTLVDGE-GEASDFTIVGTTETNVLEHKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 SP+ RA+IG G+ + V G+K Y I ++ Sbjct: 120 NESPVGRAIIGHAEGESVEVVLASGKKRVYTIAKIS 155 >gi|307825791|ref|ZP_07656007.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] gi|307733099|gb|EFO03960.1| GreA/GreB family elongation factor [Methylobacter tundripaludum SV96] Length = 166 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ ++ ELR +R + +A+S A A GD SENAEY K+ + R+ Sbjct: 14 YITPEGYQSLEIELRDLWT-KRKEVTQALSAAAAEGDRSENAEYIYRKKELRGIDRRIHY 72 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + ++ DRI F A V+L +G++ Y+IVG E + + +S+ SP Sbjct: 73 LQKRLPSLNIVSQPPDDQDRIFFSAWVTLEN-EAGEEVTYRIVGADELNPKKHYISLDSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARAL+ K D +++ E Y ++ + + Sbjct: 132 LARALLKKTFDDAVAIKNELKETRYTVVDINY 163 >gi|282854471|ref|ZP_06263808.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J139] gi|282583924|gb|EFB89304.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Propionibacterium acnes J139] gi|314922876|gb|EFS86707.1| transcription elongation factor GreA [Propionibacterium acnes HL001PA1] gi|314980833|gb|EFT24927.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA3] gi|315090280|gb|EFT62256.1| transcription elongation factor GreA [Propionibacterium acnes HL110PA4] gi|315103027|gb|EFT75003.1| transcription elongation factor GreA [Propionibacterium acnes HL050PA2] Length = 168 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 + S SP+ A++G G+ AP G+ IL V Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164 >gi|269114909|ref|YP_003302672.1| transcription elongation factor GreA [Mycoplasma hominis] gi|268322534|emb|CAX37269.1| Transcription elongation factor greA(Transcript cleavage factor greA) [Mycoplasma hominis ATCC 23114] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI +T + + Q++L++ Q+ RP++I+ I EAR GDLSENAEY +A++ Q E Sbjct: 6 NKIYLTEESLKQYQEKLKYLQEVARPQVIEEIKEARNQGDLSENAEYDSARDKQAAIENE 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+++I+ E+I + S I G+TV L+ N+ + +IVG +AD + +S Sbjct: 66 ILEIQHILENVEII--KSTSTHTIRIGSTVKLININTNEISEVKIVGALDADPFNNKISN 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SP+A AL GK++G +I V AP + +I +L Sbjct: 124 TSPLAIALNGKKVGQVIEVEAPK-KYKVKIESIL 156 >gi|258592300|emb|CBE68609.1| Transcription elongation factor greA (Transcript cleavage factor greA) [NC10 bacterium 'Dutch sediment'] Length = 166 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 86/143 (60%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 D ++QE +E R + K I AR GDL EN EY+ K+ Q + RMA L+ I Sbjct: 7 LDDLRQEFNKLDREFRQDLPKKIQAARELGDLRENGEYETIKDRQGFVKARMAFLQQRIA 66 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 ID+ + DR+A G+TV L++++SG++ Y +V + D G +S++SPI R+LI Sbjct: 67 EISKIDLRQIPKDRVALGSTVHLIDEDSGEETVYTLVFPELMDSARGWISVASPIGRSLI 126 Query: 132 GKELGDIISVNAPGGEKTYEILQ 154 GK+ GD + +N PGG K +E+++ Sbjct: 127 GKQAGDRVVMNTPGGTKAFEMMK 149 >gi|239618392|ref|YP_002941714.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1] gi|239507223|gb|ACR80710.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1] Length = 158 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K I +T +G++ ++ EL +++ + + I EAR GDLSEN+EY AK Q Sbjct: 1 MSKKNVIYLTKEGYENLKNELNTLRKKLMYEVAERIKEARELGDLSENSEYDEAKNEQGK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ ELE I+ AE+I+ + GA V L + ++ +IV QEAD+ Sbjct: 61 IDSRIKELEYILDNAEIIE-DDGDNSVVKLGAKVRLRNLKTNEEIEIRIVNSQEADIFEN 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI +A++ + + D + V P G Y+I+ + Sbjct: 120 KISADSPIGKAVLERSVDDEVVVRTPSGIIKYKIITIS 157 >gi|15674504|ref|NP_268678.1| transcription elongation factor GreA [Streptococcus pyogenes M1 GAS] gi|19745512|ref|NP_606648.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS8232] gi|28896516|ref|NP_802866.1| transcription elongation factor GreA [Streptococcus pyogenes SSI-1] gi|50913667|ref|YP_059639.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10394] gi|56808752|ref|ZP_00366470.1| COG0782: Transcription elongation factor [Streptococcus pyogenes M49 591] gi|71902951|ref|YP_279754.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS6180] gi|71910107|ref|YP_281657.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS5005] gi|94987924|ref|YP_596025.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS9429] gi|94989799|ref|YP_597899.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10270] gi|94991808|ref|YP_599907.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS2096] gi|209558851|ref|YP_002285323.1| transcription elongation factor GreA [Streptococcus pyogenes NZ131] gi|306827965|ref|ZP_07461232.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC 10782] gi|13621606|gb|AAK33399.1| putative transcription elongation factor [Streptococcus pyogenes M1 GAS] gi|19747630|gb|AAL97147.1| putative transcription elongation factor [Streptococcus pyogenes MGAS8232] gi|28811770|dbj|BAC64699.1| putative transcription elongation factor [Streptococcus pyogenes SSI-1] gi|50902741|gb|AAT86456.1| Transcription elongation factor [Streptococcus pyogenes MGAS10394] gi|71802046|gb|AAX71399.1| transcription elongation factor [Streptococcus pyogenes MGAS6180] gi|71852889|gb|AAZ50912.1| transcription elongation factor [Streptococcus pyogenes MGAS5005] gi|94541432|gb|ABF31481.1| transcription elongation factor [Streptococcus pyogenes MGAS9429] gi|94543307|gb|ABF33355.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS10270] gi|94545316|gb|ABF35363.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS2096] gi|209540052|gb|ACI60628.1| Transcription elongation factor GreA [Streptococcus pyogenes NZ131] gi|304429884|gb|EFM32926.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC 10782] Length = 176 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 17 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 136 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + + +P EI+ V Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173 >gi|257138318|ref|ZP_05586580.1| transcription elongation factor GreB [Burkholderia thailandensis E264] Length = 166 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 2/138 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87 Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146 Query: 123 SSPIARALIGKELGDIIS 140 SPIA AL+ +GD ++ Sbjct: 147 ISPIASALLKARVGDTVT 164 >gi|257791983|ref|YP_003182589.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243] gi|317489992|ref|ZP_07948484.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA] gi|325829881|ref|ZP_08163339.1| transcription elongation factor GreA [Eggerthella sp. HGA1] gi|257475880|gb|ACV56200.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243] gi|316910990|gb|EFV32607.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA] gi|325488048|gb|EGC90485.1| transcription elongation factor GreA [Eggerthella sp. HGA1] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 5/159 (3%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + Sbjct: 1 MADGNFILTQEGKDKLEEELHFLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMM 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+AE+ I++ A V++ S + + G+TV++ G ++ + IVG E+D +G Sbjct: 61 EARIAEISRILSEATVVNTPKRS-NSVHIGSTVTV--DMGGRERVFTIVGGAESDAAAGK 117 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ L+G + GD++ P G K T IL++ Sbjct: 118 ISNESPVGSVLLGHKKGDVVETTGPTGRKITMTILKLEH 156 >gi|110005071|emb|CAK99401.1| probable transcription elongation factor grea protein [Spiroplasma citri] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 87/156 (55%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++I +T +G +++EL RP +I+ + EARA GDLSENA+Y AA+ Q E Sbjct: 1 MNEEILLTKEGIKDLKEELDNLINVIRPEVIEELKEARAQGDLSENADYDAARNRQAEVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ E+E+++T+A+ I I G+TV+ K +IVG EA+ + Sbjct: 61 GRIKEIESLLTKAKEIKEVKSKTGIIKLGSTVTFTNLLINKKYELKIVGAVEANPFENTI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPIA+A+IGK+ GD+I + +IL V Sbjct: 121 SNESPIAKAIIGKKAGDLIEIKGIQEPYKVKILTVE 156 >gi|160881677|ref|YP_001560645.1| transcription elongation factor GreA [Clostridium phytofermentans ISDg] gi|254799557|sp|A9KIP3|GREA_CLOPH RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|160430343|gb|ABX43906.1| transcription elongation factor GreA [Clostridium phytofermentans ISDg] Length = 160 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K +T +G +++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKNILTYEGLKQLEDELQDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++ I+ AEV+ + D + G V +++ D+ Y+IVG EA+ G Sbjct: 61 EARIEEIDKILKNAEVVVEDEVDVDTVNIGCLVRILDMEFNDELEYKIVGSTEANSLKGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +ALIG D+I + G Y++L++ Sbjct: 121 ISNESPVGKALIGARKDDVIEIEINGNSFKYKVLEIQ 157 >gi|45656682|ref|YP_000768.1| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828301|ref|NP_713558.2| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Lai str. 56601] gi|45599918|gb|AAS69405.1| transcriptional elongation factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386153|gb|AAN50576.2| transcript cleavage factor/unknown domain fusion protein [Leptospira interrogans serovar Lai str. 56601] Length = 926 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 84/152 (55%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + + Sbjct: 766 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMEKQVQLQAAIK 825 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S Sbjct: 826 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 885 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+A++L+GK+ GD +N G E Y +L + Sbjct: 886 PLAKSLLGKKTGDSAVLNLTGAETRYTVLDIS 917 >gi|242242884|ref|ZP_04797329.1| elongation factor GreA [Staphylococcus epidermidis W23144] gi|242233659|gb|EES35971.1| elongation factor GreA [Staphylococcus epidermidis W23144] Length = 161 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 8 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S Sbjct: 68 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A ALIGK L D + V P GGE +I+++ Sbjct: 127 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161 >gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus HN001] gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] gi|258538438|ref|YP_003172937.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc 705] gi|199591181|gb|EDY99262.1| transcription elongation factor GreA [Lactobacillus rhamnosus HN001] gi|229315800|gb|EEN81773.1| transcription elongation factor GreA [Lactobacillus rhamnosus LMS2-1] gi|257147178|emb|CAR86151.1| Transcription elongation factor [Lactobacillus rhamnosus GG] gi|257150114|emb|CAR89086.1| Transcription elongation factor [Lactobacillus rhamnosus Lc 705] gi|259648617|dbj|BAI40779.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG] Length = 165 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK E Sbjct: 1 MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ L+ +I A+V + + + G V+L + D+ Y++VG EA + + + Sbjct: 60 GRLRYLDKLIRYAKV--TTPAAANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +I+SP+ A+ +GD ++V AP G ++ + Sbjct: 118 AINSPLGAAVRRHHVGDTVTVTAPSGTYQVTVMAIS 153 >gi|115374183|ref|ZP_01461470.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] gi|115368850|gb|EAU67798.1| transcription elongation factor GreB [Stigmatella aurantiaca DW4/3-1] Length = 144 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 2/143 (1%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 +EL ERP++ +S A A GD SENAEY K+ + R+ L+ + A ++ Sbjct: 3 RELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIV 62 Query: 77 DISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 + R+ FGATV+L +++ G + YQIVG E D Q G +S+ SPI +AL+ K + Sbjct: 63 TPAEQTDQGRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRISVESPIGKALLRKAV 121 Query: 136 GDIISVNAPGGEKTYEILQVLWI 158 GD + V P GE I+ + ++ Sbjct: 122 GDSVEVMRPRGEIELTIVAIAYM 144 >gi|94993684|ref|YP_601782.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS10750] gi|94547192|gb|ABF37238.1| Transcription elongation factor greA [Streptococcus pyogenes MGAS10750] Length = 176 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 17 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVHEVGTTDKDTYHIVGAAGADIFSGK 136 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + + +P EI+ V Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173 >gi|315129891|gb|EFT85881.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS03] Length = 158 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 97/155 (62%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A+ALI K L D + V P GGE +I+ + Sbjct: 124 ESPMAKALIDKGLDDEVRVPLPNGGEMNVKIVNIQ 158 >gi|327462009|gb|EGF08338.1| transcription elongation factor GreA [Streptococcus sanguinis SK1057] gi|328946834|gb|EGG40971.1| transcription elongation factor GreA [Streptococcus sanguinis SK1087] gi|332362238|gb|EGJ40038.1| transcription elongation factor GreA [Streptococcus sanguinis SK1056] Length = 160 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +I++V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIKVE 157 >gi|311778834|gb|ADQ08317.2| transcription elongation factor [Mycoplasma hyorhinis HUB-1] gi|330723604|gb|AEC45974.1| transcription elongation factor GreA [Mycoplasma hyorhinis MCLD] Length = 164 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T + + ++EL ER ++I I AR GDLSENAEY AA+E Q + E R Sbjct: 8 EEIFLTKESLESYKKELNQLINVERNKVIDEIKSAREQGDLSENAEYDAAREKQGIIEAR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E+I+++A++I+ + + D I G+ VS++ + N QIVG +A+ +S Sbjct: 68 ILEIESILSKAKLIENTGLKSDEITIGSKVSILNLKTQTSHNVQIVGSLDANPFQNKISN 127 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A ALIG++ G+ + ++ + + +IL + Sbjct: 128 LSPLASALIGRKAGEEVEIDV-SEKYSVQILSI 159 >gi|321310951|ref|YP_004193280.1| transcription elongation factor GreA [Mycoplasma haemofelis str. Langford 1] gi|319802795|emb|CBY93441.1| transcription elongation factor GreA [Mycoplasma haemofelis str. Langford 1] Length = 157 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K +T + + ++ E +R +I+ I ARA GDLSENA+Y+ A + Q + EG Sbjct: 1 MRKHRLTVESLENLKAEYNNLVNVDRVEVIEEIKAARANGDLSENADYETALDKQKVIEG 60 Query: 62 RMAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+AE++ I+ E+I + +T S + G+ V ++E + + Y+I+G + + G Sbjct: 61 RIAEIKAILDNHEIISSEGTTDSSGVVKIGSKVKILEMDENVEFEYEILGSVDNNPSMGR 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S P+A+A++GK+ G+++ V +ILQ+L Sbjct: 121 ISNECPLAKAMLGKKAGEVVEVQNIAVPYKVKILQIL 157 >gi|94971605|ref|YP_593653.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] gi|94553655|gb|ABF43579.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] Length = 212 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 5/158 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++++ E R+ ERP +++ + A GD S+NA+Y+ K +GR+ Sbjct: 19 KNYITPGGLERLKDEHRFLLTRERPAVVEVVQWAAGNGDRSDNADYRYGKRRLRQIDGRI 78 Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 L I AE++D + + R FGATV +G ++ IVG E D+ Sbjct: 79 RFLSKRIEAAELVDPERPRTGQAATRAFFGATVRYENA-AGVERVVSIVGVDEVDLSRNH 137 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ RAL GD + + APGG + +L+V + Sbjct: 138 ISWMSPLGRALTKSAEGDSVVLKAPGGTEELTVLEVRY 175 >gi|328479717|gb|EGF48865.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC 5462] Length = 134 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 91/134 (67%), Gaps = 2/134 (1%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ E R+ ++ ++ AE+ID ++ Sbjct: 2 KTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTLENRIVTIQTMLRYAEIIDAKAVA 61 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 + ++ G V+ + GD++ Y+IVG EAD +G +S SPIA+ LIG+++GD +++N Sbjct: 62 KNEVSIGKKVTF--EEDGDEETYEIVGAAEADAFNGKISNESPIAQGLIGRKVGDQVTIN 119 Query: 143 APGGEKTYEILQVL 156 PGGE T +I +V Sbjct: 120 TPGGEMTVKITKVE 133 >gi|297559077|ref|YP_003678051.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843525|gb|ADH65545.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 166 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL R I + I AR GDL EN Y AAKE Q E R+ + Sbjct: 11 WLTQEAYDRLKSELDHLSGSGRIEIAEKIEAAREEGDLKENGGYHAAKEEQGKMEARILQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L I+ A V + + + + G TV++ D+ + + +E+ + S SP Sbjct: 71 LTEILRTARVGE-APHTEGVVGPGMTVTVKFDGDDDEVTFLLASREESGSPIDVYSPRSP 129 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQ 154 + A+ GK +G+ +S P G+ EI+ Sbjct: 130 LGSAINGKRVGENVSYTLPNGKSLGVEIID 159 >gi|261855687|ref|YP_003262970.1| transcription elongation factor GreB [Halothiobacillus neapolitanus c2] gi|261836156|gb|ACX95923.1| transcription elongation factor GreB [Halothiobacillus neapolitanus c2] Length = 175 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++++G ++ EL + ER +++A+SEA A GD SENAEY K + R+ L Sbjct: 6 ISARGHARLLAELDQLWRVERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDRRIRYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +V+ +++ FGA ++L+ + ++ +VG E D + L+SI SP+ Sbjct: 66 QKRLGDIKVVRQPPTDMNKVYFGARITLLYADD-REQTVCLVGPDEIDPANQLISIDSPL 124 Query: 127 ARALIGKELGDIISVNAPGGEKT-----YEILQVLW 157 A+A++GK L + + P T EI+ + + Sbjct: 125 AKAVLGKALDAEVVLFLPSETSTPRRVHAEIIAIEY 160 >gi|21909791|ref|NP_664059.1| transcription elongation factor GreA [Streptococcus pyogenes MGAS315] gi|139474369|ref|YP_001129085.1| transcription elongation factor GreA [Streptococcus pyogenes str. Manfredo] gi|54037221|sp|P64286|GREA_STRP3 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54037222|sp|P64287|GREA_STRP8 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041331|sp|P64285|GREA_STRP1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|73919710|sp|Q5XDQ7|GREA_STRP6 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200973|sp|A2RGA4|GREA_STRPG RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|21903976|gb|AAM78862.1| putative transcription elongation factor [Streptococcus pyogenes MGAS315] gi|134272616|emb|CAM30883.1| transcription elongation factor [Streptococcus pyogenes str. Manfredo] Length = 160 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + + +P EI+ V Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157 >gi|314966306|gb|EFT10405.1| transcription elongation factor GreA [Propionibacterium acnes HL082PA2] gi|315093472|gb|EFT65448.1| transcription elongation factor GreA [Propionibacterium acnes HL060PA1] gi|327327087|gb|EGE68868.1| transcription elongation factor GreA [Propionibacterium acnes HL103PA1] Length = 168 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 7/160 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN YQAA+E Q E R Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYQAAREEQGQAEAR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117 + +LE ++ AEV + + S D + G+ V++ + + ++G ++ V Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 + S SP+ A++G G+ AP G+ IL V Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164 >gi|219856286|ref|YP_002473408.1| hypothetical protein CKR_2943 [Clostridium kluyveri NBRC 12016] gi|219570010|dbj|BAH07994.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 157 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E Sbjct: 4 MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE + A +I+ S++ D T + + + + +V E+DV++ +S Sbjct: 64 RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 I SP+ +AL ++GD +V +P G E+ + Sbjct: 123 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 155 >gi|218282252|ref|ZP_03488551.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989] gi|218216790|gb|EEC90328.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989] Length = 162 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G++ + E + R +I + EARA GDLSENA+Y AA+E Q EGR Sbjct: 4 EKFYVTQEGYNDLVNEHENLVHKVRQEVIVELQEARAQGDLSENADYDAAREHQAQVEGR 63 Query: 63 MAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + ELE +I AE+I S + + G+TV +++ + + + IVG EAD + Sbjct: 64 IRELEAMIKNAEIITESADVEDKKKKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFN 123 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 G +S ++P+A ++ ++GD+ +V +IL++ Sbjct: 124 GKLSNTTPLAEVIMDHKVGDVCTVKRVEEPYDVKILEIK 162 >gi|169836893|ref|ZP_02870081.1| transcription elongation factor GreA [candidate division TM7 single-cell isolate TM7a] Length = 151 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 6/156 (3%) Query: 2 VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 ++K+ +T G ++++ EL + R I + I+EAR YGDLSENAEY AA+E Q + E Sbjct: 1 MNKVYQITEAGKNELKDELETLKG-RRGEIAEKIAEARDYGDLSENAEYDAAREEQGIVE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AE+ENI+ A +I + ++ G+ V L+ + Y +VG EAD G V Sbjct: 60 TRIAEIENILQNAAII--TGGVSGQVGLGSVVELMTGS--KTAVYTVVGPVEADPLEGKV 115 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPI AL+GK++ DI+ +N P G+ Y+I+ + Sbjct: 116 SNESPIGAALMGKKVDDIVEINTPKGKLEYKIISIK 151 >gi|313897330|ref|ZP_07830873.1| transcription elongation factor GreA [Clostridium sp. HGF2] gi|312957700|gb|EFR39325.1| transcription elongation factor GreA [Clostridium sp. HGF2] Length = 159 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 91/154 (59%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63 Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + +LE +I AE+I D + ++ G+TV++++ ++ +++ Y IVG EAD +G + Sbjct: 64 IRDLEAMIANAEIISEDKKAATKKTVSLGSTVTILDMSTNEEETYNIVGSIEADPLNGKL 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S +P+A +L+ ++GD++ + +++ Sbjct: 124 SNITPLATSLMDHKIGDVVEIETAEEPYQVKVID 157 >gi|12045138|ref|NP_072949.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|255660457|ref|ZP_05405866.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|1346176|sp|P47524|GREA_MYCGE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1045978|gb|AAC71504.1| transcription elongation factor GreA [Mycoplasma genitalium G37] gi|166078978|gb|ABY79596.1| transcription elongation factor GreA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 161 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +GF ++++EL Q +RP II+ + EAR GDLSENA+Y AAK Q E R Sbjct: 4 NKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIETR 63 Query: 63 MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 +AE+++I+ A++I + +++ G+TV + + +S + Y IVG EA+ + + Sbjct: 64 IAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHKI 123 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+A A+ G+ +GD V +IL++ Sbjct: 124 SNESPLALAIYGRLIGDECDVVGIEVPYRVKILKIS 159 >gi|332881700|ref|ZP_08449348.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680339|gb|EGJ53288.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 92/152 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ + Sbjct: 3 YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +P Sbjct: 63 LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMAYTIVSETEANLKEGKISVQTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ L+GK++GD+ + P G EI + + Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154 >gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC 5462] Length = 165 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK E Sbjct: 1 MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ L+ +I A+V + + + G V+L + D+ Y++VG EA + + + Sbjct: 60 GRLRYLDKLIRYAKV--TTPAAANLADIGNWVTLKFDDDQDEDTYELVGPAEAGMGAAKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +I+SP+ A+ +GD ++V AP G ++ + Sbjct: 118 AINSPLGAAVRRHYVGDTVTVTAPSGTYQVTVMAIS 153 >gi|319400941|gb|EFV89160.1| transcription elongation factor greA [Staphylococcus epidermidis FRI909] Length = 158 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A ALIGK L D + V P GGE +I+++ Sbjct: 124 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158 >gi|168183357|ref|ZP_02618021.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|237793993|ref|YP_002861545.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] gi|182673543|gb|EDT85504.1| transcription elongation factor GreA [Clostridium botulinum Bf] gi|229261106|gb|ACQ52139.1| transcription elongation factor GreA [Clostridium botulinum Ba4 str. 657] Length = 154 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 86/153 (56%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +AD ++ L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDADPENMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GDI V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDIAEVDAPGEKYTVEVLEII 154 >gi|325268494|ref|ZP_08135124.1| transcription elongation factor GreA [Prevotella multiformis DSM 16608] gi|324989022|gb|EGC20975.1| transcription elongation factor GreA [Prevotella multiformis DSM 16608] Length = 169 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 92/151 (60%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE Sbjct: 16 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P Sbjct: 76 MKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTHAKMKYTIVSETEANLKQNKISIKTP 135 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A+ L+ K++GD + + P G I + Sbjct: 136 VAQGLLNKKVGDEVDIKIPRGTIRLRIDNIT 166 >gi|294505364|ref|YP_003569426.1| transcription elongation factor [Yersinia pestis Z176003] gi|294355823|gb|ADE66164.1| transcription elongation factor [Yersinia pestis Z176003] Length = 117 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 58/117 (49%), Positives = 86/117 (73%), Gaps = 1/117 (0%) Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGD 101 + ENAEY AA+E Q EGR+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ + Sbjct: 1 MKENAEYHAAREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEE 60 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 ++NY+IVGD EAD + L+S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++ Sbjct: 61 EQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 117 >gi|325696362|gb|EGD38253.1| transcription elongation factor GreA [Streptococcus sanguinis SK160] Length = 160 Score = 129 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +I++V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIEVE 157 >gi|332522954|ref|ZP_08399206.1| transcription elongation factor GreA [Streptococcus porcinus str. Jelinkova 176] gi|332314218|gb|EGJ27203.1| transcription elongation factor GreA [Streptococcus porcinus str. Jelinkova 176] Length = 160 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q Sbjct: 1 MAEKTYPMTEIEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG Sbjct: 61 EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ALIGK+ GD + +P EI+ V Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157 >gi|293400456|ref|ZP_06644601.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305482|gb|EFE46726.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 158 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 1/153 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K VT +G D++ +E R +I + EARA GDLSENA+Y AA++ Q E R Sbjct: 4 EKFYVTKEGLDELLKEQDNLIHVVRDEVILELQEARAQGDLSENADYDAARDHQARVEAR 63 Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + ELE +I AE+I+ S + G+TV++ + +S +++ Y IVG EAD +G +S Sbjct: 64 IRELEAMIANAEIIEGDKETSSKTVGLGSTVTIKDLSSEEEETYTIVGSIEADPLNGKLS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+A AL+ +LGDI+ V+ +I+ Sbjct: 124 NITPLAVALLDNKLGDIVEVSNVEEPYKVKIVN 156 >gi|161506805|ref|YP_001576759.1| transcription elongation factor GreA [Lactobacillus helveticus DPC 4571] gi|260102224|ref|ZP_05752461.1| transcription elongation factor GreA 1 [Lactobacillus helveticus DSM 20075] gi|160347794|gb|ABX26468.1| transcription elongation factor [Lactobacillus helveticus DPC 4571] gi|260083965|gb|EEW68085.1| transcription elongation factor GreA 1 [Lactobacillus helveticus DSM 20075] Length = 153 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ T ++ G TV L + + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ +E G + +V AP GE I++V Sbjct: 118 SCDSPLGQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153 >gi|256844340|ref|ZP_05549826.1| transcription elongation factor GreA [Lactobacillus crispatus 125-2-CHN] gi|262047271|ref|ZP_06020229.1| transcription elongation factor GreA [Lactobacillus crispatus MV-3A-US] gi|295692071|ref|YP_003600681.1| transcription elongation factor [Lactobacillus crispatus ST1] gi|256613418|gb|EEU18621.1| transcription elongation factor GreA [Lactobacillus crispatus 125-2-CHN] gi|260572516|gb|EEX29078.1| transcription elongation factor GreA [Lactobacillus crispatus MV-3A-US] gi|295030177|emb|CBL49656.1| Transcription elongation factor [Lactobacillus crispatus ST1] Length = 153 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ ++ G TV L + + + Y++VG EAD+ +G V Sbjct: 60 SRLRYLGKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKV 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G +V AP GE I++V Sbjct: 118 SFDSPLGQAIMKKEAGTTATVAAPAGEYQVTIVEVK 153 >gi|261885949|ref|ZP_06009988.1| transcription elongation factor GreA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 139 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 90/128 (70%), Gaps = 2/128 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E Sbjct: 1 MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+AEL +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+ Sbjct: 59 NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118 Query: 121 SISSPIAR 128 SI++P+A+ Sbjct: 119 SINTPLAK 126 >gi|148378676|ref|YP_001253217.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 3502] gi|153933080|ref|YP_001383060.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|153936284|ref|YP_001386609.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|187777798|ref|ZP_02994271.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC 15579] gi|148288160|emb|CAL82228.1| transcription elongation factor [Clostridium botulinum A str. ATCC 3502] gi|152929124|gb|ABS34624.1| transcription elongation factor GreA [Clostridium botulinum A str. ATCC 19397] gi|152932198|gb|ABS37697.1| transcription elongation factor GreA [Clostridium botulinum A str. Hall] gi|187774726|gb|EDU38528.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC 15579] Length = 154 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 86/153 (56%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + + N +V +AD + L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQNKSVLGVNSKCKIKFIEDEFETNVSLVTTMDADPEKMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|302336411|ref|YP_003801618.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084] gi|301320251|gb|ADK68738.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084] Length = 157 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K I +T +G K+ EL +R+ E R I++ I EAR +GDLSENAEY AAKE Q+ N Sbjct: 1 MANKEIILTPEGRQKLVDELAYREGERRDEIVERIKEARGFGDLSENAEYDAAKEEQSQN 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E+ I+ A+V++ ++ G TV L + G K ++ IVG E + Sbjct: 61 ESRVNEIRQILVAAKVVERGEGELS-VSIGTTVELEDAK-GKKTSFTIVGTTETNSLEHR 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +S SP LIG +GD +S P G+ +TY ++ + Sbjct: 119 ISNESPAGAVLIGHVVGDEVSFTTPNGKLRTYTVVNIT 156 >gi|83814801|ref|YP_445548.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855] gi|83756195|gb|ABC44308.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855] Length = 164 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 97/154 (62%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + +T +G +++++EL + EER RI I+EARA GDLSENAEY AAKE Q E R Sbjct: 10 ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 69 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++E+ I RA ++D ST+ + + V++ ++GD++ + +V ++EA++ +S+ Sbjct: 70 IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI L+ +E GD +S++ P G ++I + Sbjct: 130 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDIS 163 >gi|13508140|ref|NP_110089.1| transcription elongation factor GreA [Mycoplasma pneumoniae M129] gi|2494921|sp|P78019|GREA_MYCPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|1674124|gb|AAB96085.1| transcription elongation factor [Mycoplasma pneumoniae M129] Length = 160 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E R Sbjct: 4 NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63 Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AE+++I+ ++I+ S +++ G+TV + + +S + Y IVG EA+ + +S Sbjct: 64 IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A A+ G+ + D V +I++++ Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKII 158 >gi|325860400|ref|ZP_08173512.1| transcription elongation factor GreA [Prevotella denticola CRIS 18C-A] gi|327312605|ref|YP_004328042.1| transcription elongation factor GreA [Prevotella denticola F0289] gi|325482058|gb|EGC85079.1| transcription elongation factor GreA [Prevotella denticola CRIS 18C-A] gi|326944307|gb|AEA20192.1| transcription elongation factor GreA [Prevotella denticola F0289] Length = 153 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 94/150 (62%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+ Sbjct: 1 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A+++D+S +S + + +TV + + + K Y IV + EA+++ +SI +PI Sbjct: 61 KMTVAQAKIVDLSRLSTEAVQIMSTVEMTDVKTKAKMKYTIVSETEANLKQNKISIKTPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+ L+ K++GD + + P G I ++ Sbjct: 121 AQGLLNKKVGDEVEITIPRGTIKLRIDKIT 150 >gi|328463913|gb|EGF35431.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC 5463] Length = 153 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ T ++ G TV L + + + Y+IVG EAD+ G + Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ +E G + +V AP GE I++V Sbjct: 118 SCDSPLGQAIMKQEAGGVATVEAPAGEHKVTIVEVK 153 >gi|283769390|ref|ZP_06342289.1| putative transcription elongation factor GreA [Bulleidia extructa W1219] gi|283104047|gb|EFC05431.1| putative transcription elongation factor GreA [Bulleidia extructa W1219] Length = 157 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI VT +G K+Q E R ++ ++EARA GDLSENA+Y AA+E+Q E R Sbjct: 4 NKIYVTQEGLKKLQDEYNHLVHVVREQVKTELAEARAQGDLSENADYDAAREMQAQVEAR 63 Query: 63 MAELENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AELE + +I T + GATV L ++ + Y IVG EAD +G +S Sbjct: 64 IAELEINLQNYVLIDTTKTKDSTTVRIGATVQLEFLDTKEVNEYMIVGSTEADPLNGKLS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+A+A++ ++GD + VN G I+ V Sbjct: 124 NETPLAQAILEHKVGDTVFVNV-GKPYQVIIISVK 157 >gi|153955944|ref|YP_001396709.1| GreA2 [Clostridium kluyveri DSM 555] gi|146348802|gb|EDK35338.1| GreA2 [Clostridium kluyveri DSM 555] Length = 154 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E Sbjct: 1 MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE + A +I+ S++ D T + + + + +V E+DV++ +S Sbjct: 61 RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 I SP+ +AL ++GD +V +P G E+ + Sbjct: 120 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 152 >gi|160895078|ref|ZP_02075852.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50] gi|156863509|gb|EDO56940.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50] Length = 160 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K V T G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q Sbjct: 1 MAEKKQVVTYTGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ +LE I+ EV+D + + + G TV++ + ++ + IVG EAD+ Sbjct: 61 EARIEQLEAILKNVEVVDEDEVDTEVVGIGRTVTVYDYEFDEEVVFHIVGSTEADIMKNK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ AL G +G+ + V AP GE Y IL + Sbjct: 121 ISDESPVGMALKGARVGEEVIVEAPDGEFKYRILDIK 157 >gi|257064643|ref|YP_003144315.1| transcription elongation factor GreA [Slackia heliotrinireducens DSM 20476] gi|256792296|gb|ACV22966.1| transcription elongation factor GreA [Slackia heliotrinireducens DSM 20476] Length = 155 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T +G +K++ EL + + E+R + + I AR +GD+SEN+EY AK Q + E Sbjct: 1 MANDYVLTPEGKEKLEAELLYLENEKRAEVGERIKIAREFGDISENSEYDDAKNEQGMLE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+A++ +I+ A V++ S +R+ G+TV++ G ++ + IVG EA+ G + Sbjct: 61 VRIAQINDILANATVVEAPKRS-NRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 S SP+ L+G + GD ++ P G K +L + Sbjct: 118 SNDSPVGSVLLGSKKGDQLTTEGPTGRKIEITVLNIEH 155 >gi|290957897|ref|YP_003489079.1| transcription elongation factor [Streptomyces scabiei 87.22] gi|260647423|emb|CBG70528.1| putative transcription elongation factor [Streptomyces scabiei 87.22] Length = 166 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLRAELDYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + + +A G V++ + + D + + + A S S Sbjct: 70 LTQLLENAKVGEAPASADGAVAPGMVVTIAFDGDEDDTVTFLLASREYASSDIETYSPQS 129 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++G P G+ + +IL+ Sbjct: 130 PLGSGVTGKKVGQDAQYELPNGKFASVKILK 160 >gi|221632874|ref|YP_002522096.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] gi|221156489|gb|ACM05616.1| transcription elongation factor greA [Thermomicrobium roseum DSM 5159] Length = 156 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 MV + P+ T +G ++QEL +Q + P +++ + + GD+S+N+EY+ KE L Sbjct: 1 MVRERPIVLTPEGKAALEQELEHLRQHKLPLLLERLQQLSNEGDISDNSEYEDTKEELVL 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ E+E+I+ RA++I D + G+ V+++++ G + + IV +EA+ G Sbjct: 61 TEARIREIEHILRRAQMI-TRAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAAQG 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SI SP+ AL+GK +G ++V APGGE + I ++ Sbjct: 119 RISIESPVGAALLGKRVGTTVTVRAPGGEMRFTIQRIE 156 >gi|298245773|ref|ZP_06969579.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] gi|297553254|gb|EFH87119.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +G+ K ++ L + + +R + EA+ GD+SE++ Y+ AK Q EG + Sbjct: 16 VRLTPQGYTKNKERLDYLRNVKRREAADYVHEAKEAGDISESSAYEDAKNEQAKVEGEII 75 Query: 65 ELENIITRAEVIDISTMS--GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ELE+++ AEVI ++ + G V L E SG K+ ++IV EAD +SGL+S Sbjct: 76 ELEHLLAVAEVITPESLDRHDGTVRIGMKVEL-ESESGAKRVFKIVETYEADPKSGLISD 134 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+G + GD ++V PGG Y IL + Sbjct: 135 QSPVGKALMGHKEGDEVTVTTPGGVTGYTILSIT 168 >gi|301633495|gb|ADK87049.1| transcription elongation factor GreA [Mycoplasma pneumoniae FH] Length = 160 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E R Sbjct: 4 NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63 Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 +AE+++I+ ++I+ S +++ G+TV + + +S + Y IVG EA+ + +S Sbjct: 64 IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A A+ G+ + D V +I++++ Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKII 158 >gi|229815845|ref|ZP_04446169.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM 13280] gi|229808540|gb|EEP44318.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM 13280] Length = 156 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N Sbjct: 3 VSQIVLTAEGRKKLEEELAYLEGEKSREIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AE+ + A+ D S ++ G+ V+L++ G+ ++ IVG E +V +S Sbjct: 63 RIAEIRATLANAQ--DAVAGSSMIVSIGSVVTLIDGE-GEASDFTIVGTTETNVLEHKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP+ RA+IG G+ + V G+ + Y I ++ Sbjct: 120 NESPVGRAIIGHGEGESVEVVLANGKTRVYTIAKIS 155 >gi|150015636|ref|YP_001307890.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB 8052] gi|149902101|gb|ABR32934.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB 8052] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENIKKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACRNYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I+ A VID ++ + + + D+ +V + D ++ ++SI S + Sbjct: 65 LTMISTATVIDDGSIDKSVLGINSKARIRFVEDDDEVVVTLVTTMDLDPENMIISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL G + GDI+ VNAPG + + EIL+VL Sbjct: 125 GKALSGNKAGDIVEVNAPGEKYSVEILEVL 154 >gi|225873815|ref|YP_002755274.1| transcription elongation factor GreA [Acidobacterium capsulatum ATCC 51196] gi|225793182|gb|ACO33272.1| transcription elongation factor GreA [Acidobacterium capsulatum ATCC 51196] Length = 165 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 90/146 (61%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 K+ ++++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ + Sbjct: 7 KKLLEDIKQLEHELAHELPAEIKKAAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAE 66 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 +++++ + DR+AFG+TV + + + +K Y++V +E+DV GL+S +SPI RALIG Sbjct: 67 LSLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIG 126 Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158 K++GD +V P G + E+L++ I Sbjct: 127 KQVGDTATVVTPSGNRELEVLKLTTI 152 >gi|311898109|dbj|BAJ30517.1| putative transcription elongation factor GreA [Kitasatospora setae KM-6054] Length = 165 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 1/153 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D +T ++K++ E R I K I AR GDL ENA Y AAK+ Q E R Sbjct: 7 DVTWLTQDHYNKLKAEFDHLTGPWRIEIAKKIEAAREEGDLKENAGYHAAKDEQGKTEAR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +L ++ RA+V + SG + + D + + + D + S Sbjct: 67 IRQLSQLLERAKVGEAPADSGVVAPGMLVKVAFDGDEDDTMEFLLASREVTDGDIDVYSP 126 Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154 SP+ RA+IGK +G+ P G+K +I + Sbjct: 127 QSPLGRAIIGKSVGEDAQYELPNGKKARVKITE 159 >gi|58336547|ref|YP_193132.1| transcription elongation factor GreA [Lactobacillus acidophilus NCFM] gi|227903098|ref|ZP_04020903.1| transcription elongation factor GreA [Lactobacillus acidophilus ATCC 4796] gi|58253864|gb|AAV42101.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM] gi|227869084|gb|EEJ76505.1| transcription elongation factor GreA [Lactobacillus acidophilus ATCC 4796] Length = 153 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + +ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQDARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + AE+++ T ++ G TV L + + + Y+IVG EA+++ G + Sbjct: 60 SRLRYLDKQLKYAEIVE--TKDDGKVDLGKTVVLKFDDDDETEEYKIVGRMEANLEDGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G V AP GE I++V Sbjct: 118 SFDSPLGQAIMKKEAGVTSIVEAPAGEYKVTIVEVK 153 >gi|73662460|ref|YP_301241.1| transcription elongation factor GreA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747876|sp|Q49Y48|GREA_STAS1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|72494975|dbj|BAE18296.1| transcription elongation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 158 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + P+T +GF+K++ EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E Sbjct: 5 KQYPMTQEGFEKLEHELEELKTVKRPEVVEKIKIARSFGDLSENSEYDAAKDEQGFIEQD 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +EN++ A +I+ T + + + G TV++VE +++ YQIVG E+D G +S Sbjct: 65 IQRVENMLRNALIIE-DTGNNNEVQLGKTVTIVELPGEEEEEYQIVGSAESDAFKGKISN 123 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+A++LIGK+L D + V P GGE +I+ + Sbjct: 124 ESPMAKSLIGKKLDDEVRVPLPNGGEINVKIVNIK 158 >gi|313885264|ref|ZP_07819016.1| transcription elongation factor GreA [Eremococcus coleocola ACS-139-V-Col8] gi|312619955|gb|EFR31392.1| transcription elongation factor GreA [Eremococcus coleocola ACS-139-V-Col8] Length = 159 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K+ P+T +G +K++ EL + R II+ I AR++GDLSEN+EY+AAK+ Q + Sbjct: 1 MDEKVYPMTLEGKEKLELELEDLKVNRRKEIIERIKIARSFGDLSENSEYEAAKDEQAML 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+A +EN+I AE+ID + D ++ G V+ E GD+++Y IVG EAD Sbjct: 61 EGRIATIENMIRFAEIIDDKHVDEDEVSLGRKVTFKELPDGDEESYIIVGSAEADPMEFK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +S SPIA++LIGK+LG I+S+ +PGG EI + I Sbjct: 121 ISNDSPIAKSLIGKKLGQIVSIESPGGAFDVEITNIEKI 159 >gi|308234247|ref|ZP_07664984.1| GreA/GreB family elongation factor [Atopobium vaginae DSM 15829] gi|328943529|ref|ZP_08240994.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829] gi|327491498|gb|EGF23272.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829] Length = 157 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T +G K+ EL +R+ E+ I++ + EAR +GDLSEN+EY AAKE Q+LNE R Sbjct: 4 KELILTPEGRQKLVDELAYREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSLNESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+ I+ A+V++ + ++ G TV L +K G ++ IVG E D +S Sbjct: 64 INEIRQILATAKVVEHTDGELS-VSIGTTVELSDKK-GKSISFTIVGTTETDSLEHKISN 121 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SP LIG +GD++S + P G EKTY IL + Sbjct: 122 ESPAGAELIGHVVGDVVSFSTPSGKEKTYTILNIT 156 >gi|255526929|ref|ZP_05393824.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296184898|ref|ZP_06853309.1| putative transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|255509377|gb|EET85722.1| transcription elongation factor GreA [Clostridium carboxidivorans P7] gi|296050680|gb|EFG90103.1| putative transcription elongation factor GreA [Clostridium carboxidivorans P7] Length = 155 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 1/155 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + I +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E Sbjct: 1 MRSIMLTEVGKKKLEEELEYLKTVKRAEIKAALKYARAQGDLSENADYDAAKDDQSMTET 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE + A +I+ S T + + D + +V E+DV++ +S Sbjct: 61 RIMELEQQLKNAVIIEDSDEDH-VFGINKTALVKFYDIDDTEEVTLVSSVESDVKNMKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 I SP+ AL E+G ++V +P GE E+L++L Sbjct: 120 IESPLGAALYKIEVGKKVAVESPDGEYEVEVLKIL 154 >gi|297625161|ref|YP_003706595.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] gi|297166341|gb|ADI16052.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] Length = 158 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K + +T +G++KI++ELR+ + +R +I + + A A GDL E+A Y A+ Q+ N Sbjct: 1 MTKKPVYLTPQGYEKIKEELRYLVEVKRQQIAENMGTAIADGDLRESAAYDEARMEQSAN 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+A+LE I+ RA V++ GA+++L + SG + + +VG EAD+ Sbjct: 61 EARIADLEEILHRAVVVENQEGELAVARLGASLTLED-ESGQQTTFYLVGTHEADIFENR 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ R L+GK +GD +++ Y +++V + Sbjct: 120 ISDESPLGRELLGKRVGDKVNLALGRTRSEYTVVEVGF 157 >gi|297584721|ref|YP_003700501.1| transcription elongation factor GreA [Bacillus selenitireducens MLS10] gi|297143178|gb|ADH99935.1| transcription elongation factor GreA [Bacillus selenitireducens MLS10] Length = 156 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +K +T +G K+++EL E R +++ I AR++GDLSEN+EY +AKE Q EGR Sbjct: 4 EKHYMTEEGKKKLEEELEQLITERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE +I AE+I+ S +++ G V+ VE G+++ Y IVG EAD G +S Sbjct: 64 IQQLETMIRNAEIIEEDKNS-SKVSLGKKVTFVEIPDGEEEEYVIVGRAEADPLDGKISN 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A++LIGKE+GD ++V+ PGG+ T +I V Sbjct: 123 ESPMAQSLIGKEIGDQVTVSTPGGDMTVKITAVS 156 >gi|169834166|ref|YP_001694924.1| transcription elongation factor GreA [Streptococcus pneumoniae Hungary19A-6] gi|238688370|sp|B1ICT9|GREA_STRPI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|168996668|gb|ACA37280.1| transcription elongation factor GreA [Streptococcus pneumoniae Hungary19A-6] Length = 160 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI + LIGK+ GD ++ P G +IL+V Sbjct: 121 VSNESPIGQDLIGKKTGDTATIETPVGSYDVKILKVE 157 >gi|298242601|ref|ZP_06966408.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] gi|297555655|gb|EFH89519.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM 44963] Length = 154 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T+ G + +L + E R ++ + + +A+ GD+ +NA Y AK+ Q L E Sbjct: 3 TQDVFLTNDGLQRALSQLDNLRTEGRAKVAQYLHDAKESGDVIDNAAYDDAKKEQALLES 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE+++TRA++I+ + D ++ G+ V L G Y IVG EA +G +S Sbjct: 63 RILELEHLVTRAKLINNAR--TDEVSLGSIVHLRSSE-GRDYCYTIVGAFEASPSAGRIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G + GD + V+ PGG K Y I ++ Sbjct: 120 NESPVGRALLGHKAGDHVIVSTPGGVKEYTISRIE 154 >gi|313678570|ref|YP_004056310.1| transcription elongation factor GreA [Mycoplasma bovis PG45] gi|312950163|gb|ADR24758.1| transcription elongation factor GreA [Mycoplasma bovis PG45] Length = 163 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ AE+ID + ++ GATV + + + I+G +++ +S Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVKYLNMKTNKELVVTIMGPHDSNPIENKISN 126 Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157 SP+A+A++ +GD++ V P + ++L + + Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161 >gi|119505414|ref|ZP_01627487.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2080] gi|119458692|gb|EAW39794.1| transcription elongation factor GreB [marine gamma proteobacterium HTCC2080] Length = 169 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G ++++EL+ + ERP + A+ A A GD SEN +Y K+ + R+ Sbjct: 14 YITQEGEQRLREELKELWKVERPVVTAAVQAAAANGDRSENGDYIYGKKRLREIDSRVRF 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + V+ ++ FGA V+L G ++IVG E D+ + +S SP Sbjct: 74 LRKRLDELIVVTAGPTDPEKAYFGAYVTLENTE-GQVHQWRIVGPDEFDISAQKLSCDSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL+GK + + + +P G KT+ +++V + Sbjct: 133 LGRALLGKPIDAEVVIESPSGPKTWHLIEVRY 164 >gi|256849256|ref|ZP_05554689.1| transcription elongation factor GreA [Lactobacillus crispatus MV-1A-US] gi|312978351|ref|ZP_07790093.1| transcription elongation factor GreA 1 (Transcript cleavage factorgreA 1) [Lactobacillus crispatus CTV-05] gi|256714032|gb|EEU29020.1| transcription elongation factor GreA [Lactobacillus crispatus MV-1A-US] gi|310894694|gb|EFQ43766.1| transcription elongation factor GreA 1 (Transcript cleavage factorgreA 1) [Lactobacillus crispatus CTV-05] Length = 153 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 1 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AE++ ++ G TV L + + + Y++VG EAD+ +G V Sbjct: 60 SRLRYLGKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKV 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G +V AP GE I++V Sbjct: 118 SFDSPLGQAIMKKEAGTTATVAAPVGEYQVTIVEVK 153 >gi|329935321|ref|ZP_08285287.1| transcription elongation factor GreA [Streptomyces griseoaurantiacus M045] gi|329305144|gb|EGG49003.1| transcription elongation factor GreA [Streptomyces griseoaurantiacus M045] Length = 166 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 2/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ +A+V + + G V++ + + D ++ + + A S S Sbjct: 70 LTQLLEQAQVGEAQASEDGAVGPGMVVTIAFDGDEDDTLSFLLASREYASSDIETYSPQS 129 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ +IG ++G+ P G+K + +IL+ Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVKILK 160 >gi|310641883|ref|YP_003946641.1| transcription elongation factor [Paenibacillus polymyxa SC2] gi|309246833|gb|ADO56400.1| Transcription elongation factor [Paenibacillus polymyxa SC2] Length = 159 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 95/154 (61%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G K+++EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R Sbjct: 4 EEVLLTKEGLAKLEEELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE ++T+A ++D S + ++ G+TV L + +K Y++V EADV +S Sbjct: 64 IMVLEKMLTKARIVDESNLDLKTVSIGSTVILNDIEFSEKVEYKVVSPAEADVLDNKISY 123 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL+GKE+G II V+AP YE+L++ Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157 >gi|116513443|ref|YP_812349.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092758|gb|ABJ57911.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125081|gb|ADY84411.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 153 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G + Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+ + GD ++V AP G+ IL V Sbjct: 118 PFDSPLGHALMKHKAGDRVTVKAPMGDYEVTILSVK 153 >gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [Lactobacillus casei BL23] gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23] gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W] gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II] Length = 155 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ L+ +I A+V + D G ++L + D+ Y++VG EA + + Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +I+SP+ A+ GD ++V AP G ++ + Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152 >gi|225377148|ref|ZP_03754369.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM 16841] gi|225211053|gb|EEG93407.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM 16841] Length = 167 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKNALEAVKEARAHGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A++I + D + TV++ ++ +++ Y+IV + L+S SP+ Sbjct: 65 EKMIRTAKIISTDSAD-DEVGMNNTVTVYFEDDDEEETYKIVTTIRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +AL+G ++GD V EI ++ Sbjct: 124 GKALLGHKIGDRCEVKVNDNYSYFVEIRKIE 154 >gi|295838659|ref|ZP_06825592.1| transcription elongation factor GreA [Streptomyces sp. SPB74] gi|197699092|gb|EDY46025.1| transcription elongation factor GreA [Streptomyces sp. SPB74] Length = 165 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G+K + +IL Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILD 159 >gi|315185942|gb|EFU19706.1| transcription elongation factor GreA [Spirochaeta thermophila DSM 6578] Length = 898 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 81/152 (53%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + + Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ + RA+++ + +I+FG V+L+ + + ++ Y I+G E++ G++S S Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNEETKKRETYVILGPWESNPDKGIISYLS 861 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P L G + G+ + Y + ++ Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893 >gi|206895281|ref|YP_002247422.1| transcription elongation factor GreA [Coprothermobacter proteolyticus DSM 5265] gi|206737898|gb|ACI16976.1| transcription elongation factor GreA [Coprothermobacter proteolyticus DSM 5265] Length = 163 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T +G+ KI +EL++ ++ +R + + I EARA GDLSEN+E++AAKE Q L E R Sbjct: 6 EEAILTEEGYKKILEELKYLKEVKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEER 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVS 121 +A LE ++ A V+ ++ D+++ G V ++++++G ++++ IVG +E D SG +S Sbjct: 66 IARLETLVYNARVVKAEDLALDQVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 SP+ L+G++ GD + + G K YEIL ++ Sbjct: 126 SKSPLGSRLLGRKRGDRVEIKLRNGSKAVYEILDIV 161 >gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 187 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +TS G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+ Sbjct: 38 KMTSTGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 96 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+++ + +++ G V++ + D+ YQ+VG QEA+++ +S +SP Sbjct: 97 LNKQLQYAQIVQPA--DNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 154 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I +AL + D+++VNAP G +++ V Sbjct: 155 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 185 >gi|300812144|ref|ZP_07092589.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496872|gb|EFK31949.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325684830|gb|EGD26979.1| transcription elongation factor GreA 1 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 153 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G + Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+ + GD ++V AP G+ IL V Sbjct: 118 PFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSVK 153 >gi|239979735|ref|ZP_04702259.1| transcription elongation factor GreA [Streptomyces albus J1074] gi|291451596|ref|ZP_06590986.1| transcription elongation factor [Streptomyces albus J1074] gi|291354545|gb|EFE81447.1| transcription elongation factor [Streptomyces albus J1074] Length = 165 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEISKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ +A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLAQAKVGEPPADDG-IVEPGMVVTIAFDGDPDDTLTFLMASREYASADIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G++ + +IL Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKRASVKILA 159 >gi|31544396|ref|NP_852974.1| transcription elongation factor greA [Mycoplasma gallisepticum str. R(low)] gi|81420953|sp|Q7NBS1|GREA_MYCGA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|31541240|gb|AAP56542.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. R(low)] gi|284930439|gb|ADC30378.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. R(high)] gi|284931203|gb|ADC31141.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Mycoplasma gallisepticum str. F] Length = 159 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 82/155 (52%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T +G K+Q ELR +R +IK I EAR GDLSENA+Y +AK Q+ E Sbjct: 4 TKKHLLTQEGLKKLQAELRLLVDVKRADVIKLIQEAREQGDLSENADYDSAKATQSEIES 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E+++I+ E+I R+ GA V++ + + Y+IVG E+D +S Sbjct: 64 RITEIQDILNHYEIIKEVDTKNKRVIVGAKVTIHDHSDECNYTYEIVGPIESDPAENKIS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A+A++ K+ G+ V I +++ Sbjct: 124 HESPVAKAIMDKKEGESAEVIGIEHPYKVTIKKIV 158 >gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM 6192] gi|306532518|gb|ADN02052.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM 6192] Length = 898 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 81/152 (53%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + + Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ + RA+++ + +I+FG V+L+ K + ++ Y I+G E++ G++S S Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNKETKKRETYVILGPWESNPDKGIISYLS 861 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P L G + G+ + Y + ++ Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893 >gi|297202039|ref|ZP_06919436.1| transcription elongation factor greA [Streptomyces sviceus ATCC 29083] gi|197714326|gb|EDY58360.1| transcription elongation factor greA [Streptomyces sviceus ATCC 29083] Length = 166 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D +T + + K+++EL + R + I+ AR GDL EN Y AAKE Q E R Sbjct: 7 DVTWLTQEAYTKLKEELAYLSGPAREEVTAKIAAAREEGDLRENGGYHAAKEEQGKQELR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG-DKKNYQIVGDQEADVQSGLVS 121 + +L ++ +A+V + T + +A G V++ D + + + A S Sbjct: 67 IRQLTQLLEKAKVGEAPTSTDGAVAPGMVVTIAFDGDESDTMTFLLASREYASADVETYS 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154 SP+ +IG ++G+ P G+K + IL+ Sbjct: 127 PQSPLGSGVIGHKVGEDAEYELPNGKKASVTILK 160 >gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] gi|38257536|sp|Q88ZS9|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName: Full=Transcript cleavage factor greA 1 gi|28269986|emb|CAD62886.1| transcription elongation factor GreA [Lactobacillus plantarum WCFS1] Length = 156 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+ Sbjct: 7 KMTAAGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+++ + D++ G V++ + D+ YQ+VG QEA+++ +S +SP Sbjct: 66 LNKQLQYAQIVQPA--DNDQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I +AL + D+++VNAP G +++ V Sbjct: 124 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154 >gi|322804996|emb|CBZ02556.1| transcription elongation factor GreA [Clostridium botulinum H04402 065] Length = 154 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 85/153 (55%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ + L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|318056471|ref|ZP_07975194.1| transcription elongation factor GreA [Streptomyces sp. SA3_actG] gi|318080242|ref|ZP_07987574.1| transcription elongation factor GreA [Streptomyces sp. SA3_actF] gi|333026761|ref|ZP_08454825.1| putative transcription elongation factor GreA [Streptomyces sp. Tu6071] gi|332746613|gb|EGJ77054.1| putative transcription elongation factor GreA [Streptomyces sp. Tu6071] Length = 165 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G+K + +IL Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILD 159 >gi|86742583|ref|YP_482983.1| GreA/GreB family elongation factor [Frankia sp. CcI3] gi|86569445|gb|ABD13254.1| GreA/GreB family elongation factor [Frankia sp. CcI3] Length = 160 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A+V + +G+ G V + + + + I ++ + Sbjct: 61 ARIRQLTDLLRDAQVGEAPAATGE-AGPGTVVEVRFSGERETEKFLIGSREDHSTPIEVF 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 S +SP+ A+ G + G+ +S P G EI+ V Sbjct: 120 SPASPLGGAVSGHKAGETVSYTLPNGRSAKVEIVSVS 156 >gi|15895695|ref|NP_349044.1| transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|15025446|gb|AAK80384.1|AE007743_6 Transcription elongation factor, greA [Clostridium acetobutylicum ATCC 824] gi|325509845|gb|ADZ21481.1| Transcription elongation factor, greA [Clostridium acetobutylicum EA 2018] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G K+++EL + + +R I +A+ AR+ GDLSENA+Y AAK+ Q++NE Sbjct: 1 MSSKI-LTESGKKKLEEELEYLKTVKRAEIKEALKFARSQGDLSENADYSAAKDDQSMNE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ E+E+I+ V++ S+ + + + ++ + + +V E+D+++ V Sbjct: 60 TRIQEIEDILKSCTVVE-SSENENVFDLNKKALVKFCDTDETEEVTLVSSVESDIKNMKV 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI SP+ +AL EL V +P G E+L++L Sbjct: 119 SIDSPLGKALYKSELNKRTLVQSPDGSYEVEVLKIL 154 >gi|254443766|ref|ZP_05057242.1| transcription elongation factor GreA domain protein [Verrucomicrobiae bacterium DG1235] gi|198258074|gb|EDY82382.1| transcription elongation factor GreA domain protein [Verrucomicrobiae bacterium DG1235] Length = 617 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ ++K E ++ P +AI+EAR GDL EN+EY+ AK+ Q + R L Sbjct: 462 VSKGSYEKAVAEFDDIVTKKIPENSQAIAEARELGDLKENSEYKMAKQDQQILMSRRNLL 521 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I RA++ D ++ + + I G V+L ++ G + Y ++G + D + ++S +P+ Sbjct: 522 EADIKRAQITDFTSATTETIGIGNIVTLKDEKDGSEVTYTLLGAWDGDPDNFIISYLTPL 581 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV-LWI 158 ++++GK +GD +SV E I + +I Sbjct: 582 GKSMLGKRIGDEVSVTVGSTENKLTITDITRYI 614 >gi|302519408|ref|ZP_07271750.1| transcription elongation factor greA [Streptomyces sp. SPB78] gi|302428303|gb|EFL00119.1| transcription elongation factor greA [Streptomyces sp. SPB78] Length = 165 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G+K + +IL Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILA 159 >gi|148377651|ref|YP_001256527.1| transcription elongation factor greA [Mycoplasma agalactiae PG2] gi|291320341|ref|YP_003515603.1| transcription elongation factor greA [Mycoplasma agalactiae] gi|259647749|sp|A5IYH4|GREA_MYCAP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|148291697|emb|CAL59083.1| Transcription elongation factor greA [Mycoplasma agalactiae PG2] gi|290752674|emb|CBH40647.1| Transcription elongation factor greA [Mycoplasma agalactiae] Length = 163 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ AE+ID + ++ GATV + + + I+G +++ +S Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISN 126 Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157 SP+A+A++ +GD++ V P + ++L + + Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161 >gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334] Length = 155 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ L+ +I A+V + D G ++L + D Y++VG EA + + Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQDKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +I+SP+ A+ GD ++V AP G ++ + Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152 >gi|104773455|ref|YP_618435.1| transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422536|emb|CAI97129.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 153 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G + Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+ + GD + V AP G+ IL V Sbjct: 118 PFDSPLGHALMKHKAGDRVKVKAPMGDYEVTILSVK 153 >gi|21223338|ref|NP_629117.1| transcription elongation factor GreA [Streptomyces coelicolor A3(2)] gi|256785558|ref|ZP_05523989.1| transcription elongation factor GreA [Streptomyces lividans TK24] gi|289769454|ref|ZP_06528832.1| transcription elongation factor greA [Streptomyces lividans TK24] gi|25453008|sp|Q9ADK2|GREA_STRCO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|20520966|emb|CAD30950.1| putative transcription elongation factor [Streptomyces coelicolor A3(2)] gi|289699653|gb|EFD67082.1| transcription elongation factor greA [Streptomyces lividans TK24] Length = 165 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K+++EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKEELEYLTGPARTEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G +A G V++ + + D + + + A S S Sbjct: 70 LTQLLESAKVGEAPAADG-VVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154 P+ ++G ++GD P G+ + IL+ Sbjct: 129 PLGSGVLGHKVGDDAQYELPNGKPASVRILK 159 >gi|171463505|ref|YP_001797618.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193043|gb|ACB44004.1| transcription elongation factor GreB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 168 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T G+++I+ EL +R ++K + A + GD SEN +Y K+ + Sbjct: 1 MEEKNYITLAGYERIKTELLQLLNLDRLEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60 Query: 61 GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVEK---NSGDKKNYQIVGDQE 112 R+ L + A V+D S D++ FGA+V+ +G + + IVG E Sbjct: 61 RRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDE 120 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 D+ VS SPIA+ALI +GD + + P G EIL V ++ Sbjct: 121 VDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTGPTEIEILDVQYL 166 >gi|288917982|ref|ZP_06412341.1| transcription elongation factor GreA [Frankia sp. EUN1f] gi|288350637|gb|EFC84855.1| transcription elongation factor GreA [Frankia sp. EUN1f] Length = 161 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 1/157 (0%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 1 MTQQTWLTQEAYDRLRSELEYLTGTWRTEIATKIEAAREEGDLRENGGYHAAKEEQGKQE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ +L +++ A V + + G V + + + + I ++ + Sbjct: 61 ARIRQLMDLLRDARVGETAPAVSGEAGPGMIVEIRFPGEKETEKFLIGSREDHSTSIEVF 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 S +SP+ A+ G + G+ ++ P G EI+ V Sbjct: 121 SPASPLGGAVTGHKAGETVNYTLPNGRSAAVEIVAVS 157 >gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 921 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 82/153 (53%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + VT + F+ + E E + I EA+ GDL ENAEY+AA E Q + Sbjct: 759 DVVLVTRRAFNAKKLEFEHLVNVEMAENSRDIGEAQEKGDLRENAEYKAAMEKQAQLQAA 818 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE + A ++D+S + +++ G TV L K +G+ Y I+G +AD + ++S Sbjct: 819 IKRLEAELKSARILDLSDVKTEKVGIGTTVRLKNKQTGESVTYSILGAWDADTEKNIISY 878 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+A++L+GK G+ ++ E YE+L + Sbjct: 879 QSPLAKSLLGKHTGNEATLVFGSTETVYEVLDI 911 >gi|187934761|ref|YP_001886308.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] gi|187722914|gb|ACD24135.1| transcription elongation factor GreA [Clostridium botulinum B str. Eklund 17B] Length = 154 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 79/150 (52%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +++EL +R +R I K A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENMKNLREELDYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 N+I+ A +ID T+ + + + D+ +V + D ++ +SI S + Sbjct: 65 MNMISTATIIDSETIDKSVLGINSKAKIKFIEDEDETIITLVTTMDLDPEAMRISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AL GK+ GDI+ VNAPG EIL++L Sbjct: 125 GKALTGKKQGDIVEVNAPGENYKVEILEIL 154 >gi|84497875|ref|ZP_00996672.1| putative transcription elongation factor [Janibacter sp. HTCC2649] gi|84381375|gb|EAP97258.1| putative transcription elongation factor [Janibacter sp. HTCC2649] Length = 162 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL R I+ I AR GDL EN Y AA+E Q NE R+ + Sbjct: 10 YLTQEAFDRLKAELEELSGPGRADIVAKIEAAREEGDLKENGGYHAAREEQGKNEARIRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A +I + + G V++ + GD++ + + + AD + S SP Sbjct: 70 LTQLLENA-IIGETPPDDGIVEPGMLVTV--EIFGDEETFLLGSREIADGSLQVYSEQSP 126 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154 I A+ GK+ GD ++ AP G+ +IL Sbjct: 127 IGSAVNGKKAGDSVTYEAPNGKQIDVKILS 156 >gi|313123017|ref|YP_004033276.1| transcription elongation factor grea [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279580|gb|ADQ60299.1| Transcription elongation factor GreA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 153 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK + Sbjct: 1 MVYYQKMTPEGYKQIEDEIAVLKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G + Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ AL+ + GD ++V AP G+ IL V Sbjct: 118 PFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSVK 153 >gi|28211542|ref|NP_782486.1| transcription elongation factor greA [Clostridium tetani E88] gi|28203983|gb|AAO36423.1| transcription elongation factor greA [Clostridium tetani E88] Length = 154 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 81/151 (53%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R +R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTTKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ + +S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDDFETNVSLVTTMDAEPEKMHISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S + +AL+GK++GD++ V APG + T E+L+ Sbjct: 122 SDLGKALMGKKVGDVVEVYAPGEKYTVEVLE 152 >gi|111225557|ref|YP_716351.1| transcription elongation factor GreA [Frankia alni ACN14a] gi|111153089|emb|CAJ64836.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Frankia alni ACN14a] Length = 163 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 2/155 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E Sbjct: 5 TQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEA 64 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L +++ A+V + S + G V + + + + I ++ + S Sbjct: 65 RIRQLSDLLRDAQVGE-SPATTGEAGPGTVVEVRFPGEQETEKFLIGSREDHSAPIDVFS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 +SP+ A+ G + G+ +S P G EI+ V Sbjct: 124 PASPLGGAVNGHKAGETVSYTLPNGRSAKVEIVSV 158 >gi|328884670|emb|CCA57909.1| Transcription elongation factor GreA [Streptomyces venezuelae ATCC 10712] Length = 165 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKDELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLQHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTMTFLLASREYASGDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK+ GD P G+K T +IL Sbjct: 129 PLGVGVNGKKAGDDAQYELPNGKKATVKILS 159 >gi|299135877|ref|ZP_07029061.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298602001|gb|EFI58155.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 156 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 89/146 (60%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++++++ + E + I +A A GDLSENAEY +AK+ Q R+ +L+ + Sbjct: 6 KALEEQIKALEYELTTELPAEIKKAVALGDLSENAEYHSAKQRQEFVNARLGQLKKRMGE 65 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 ++++ + D++ FG+T+ + + ++ Y++V +EADV GL+S +SPI RAL+G Sbjct: 66 LAMVNLDNIPRDKVGFGSTIVVFDSTKDEEITYKLVTSEEADVTKGLISTTSPIGRALLG 125 Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158 KE+GD +V P G++ E+L++ I Sbjct: 126 KEIGDTATVVTPNGKRELEVLKLTTI 151 >gi|94967583|ref|YP_589631.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] gi|94549633|gb|ABF39557.1| GreA/GreB family elongation factor [Candidatus Koribacter versatilis Ellin345] Length = 156 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 90/152 (59%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+QQE+ + E + + + +A A GDLSENAEY AK+ Q R+ ++ Sbjct: 1 MTDHIRQKLQQEIEVLEHELQHELPAELKKAVAMGDLSENAEYHMAKQRQEFVRARLGQM 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +++++ + DR A G+T+ + + +K +Y++V +E+DV GL+S +SPI Sbjct: 61 KRRMAELSLVNMANIPKDRAAIGSTLKVHDLTKDEKIDYKLVTSEESDVSKGLISTTSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 RAL+ K GD++ V P G++ EIL++ I Sbjct: 121 GRALLNKREGDVVEVVTPAGKRELEILKLTTI 152 >gi|308189955|ref|YP_003922886.1| transcription elongation factor [Mycoplasma fermentans JER] gi|319777236|ref|YP_004136887.1| transcription elongation factor [Mycoplasma fermentans M64] gi|238809906|dbj|BAH69696.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624697|gb|ADN69002.1| transcription elongation factor [Mycoplasma fermentans JER] gi|318038311|gb|ADV34510.1| Transcription elongation factor [Mycoplasma fermentans M64] Length = 163 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K Q E + ERP I A+ EARA GDLSENAEY AA++ Q + E R Sbjct: 7 EKIILAKETLEKYQAEYEHLIKVERPEIQAALKEARAQGDLSENAEYDAARDRQGIVEAR 66 Query: 63 MAELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ELE I+ AEVI+ + + GATV + + + +I+G +++ G + Sbjct: 67 IVELEGILANAEVIETNQNKKGKLKAGIGATVKYLNLKTNKEITVKIMGIHDSNPMEGNI 126 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+A+A++ + G + V+ P + + +IL + + Sbjct: 127 SNESPVAQAIMEGDEGATVEVDVPN-KYSIKILSIQY 162 >gi|162447758|ref|YP_001620890.1| transcription elongation factor GreA [Acholeplasma laidlawii PG-8A] gi|229485767|sp|A9NGN4|GREA_ACHLI RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|161985865|gb|ABX81514.1| transcription elongation factor [Acholeplasma laidlawii PG-8A] Length = 158 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 4/159 (2%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K +T G D+++ EL + +R ++A+ EAR GDLSENA+Y AA+ Q Sbjct: 1 MASKKVYELTQSGLDQLKDELTHLKDVKRVENLEALKEAREQGDLSENADYDAARNEQAR 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ E+E+I+ ++I + + G V L Y +VG EAD ++ Sbjct: 61 IEARILEIESILKNVKIIR-TNDDSTTVNIGKKVLLHFVEKNKDVEYHVVGTIEADPKNF 119 Query: 119 LVSISSPIARALIGKELGDIISVN-APGGEKTYEILQVL 156 +SI SP+ RA+ GKE+GD++ + A + EI + Sbjct: 120 KISIESPLGRAIKGKEVGDLVQIKSATNKQSNVEIKAIS 158 >gi|154504438|ref|ZP_02041176.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149] gi|153795213|gb|EDN77633.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149] Length = 167 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 3/154 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T KIQQE+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE Sbjct: 1 MREK--LTQSDVKKIQQEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ A +++ + D + TV + ++ + + Y+IV +GL+ Sbjct: 59 SRIRYLERMLKTAVIVEDHSG-ADEVGLNNTVQVYCEDDDELETYRIVTSVRGSSLNGLI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SI SPI +AL+G ++GD + V Y +++ Sbjct: 118 SIESPIGKALLGHKVGDRVFVKVNDEFGYYVVIK 151 >gi|256827725|ref|YP_003151684.1| transcription elongation factor GreA [Cryptobacterium curtum DSM 15641] gi|256583868|gb|ACU95002.1| transcription elongation factor GreA [Cryptobacterium curtum DSM 15641] Length = 156 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M D+ + T +G K+++EL + + E+R + I AR +GD+SEN+EY AK Q L Sbjct: 1 MADQSYILTEEGKQKLEEELHYLETEKRAEVGARIKVAREFGDISENSEYDDAKNEQGLL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+AE+ I++ A V+ S ++ G+TV++ G ++ + IVG E++V+ G Sbjct: 61 EARIAEINRILSEATVVAAPKRS-SKVGIGSTVTVA--IGGSQRVFNIVGAAESNVREGR 117 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 +S SP+ ALIG + GD + P G E I ++ Sbjct: 118 ISNESPVGSALIGHKKGDTVVAEGPTGREVKMTIEKIEH 156 >gi|300856704|ref|YP_003781688.1| putative transcription elongation factor [Clostridium ljungdahlii DSM 13528] gi|300436819|gb|ADK16586.1| predicted transcription elongation factor [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 1/153 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T G K++ EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E Sbjct: 1 MQDVILTESGKKKLEDELEYLKTVKRVEIKLALKAARAQGDLSENADYDAAKDDQSMTET 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ELE + A +I+ S+ D T + + + + +V EADV++ +S Sbjct: 61 RIQELEAQLKNAVIIESSS-EADVFDINKTALVKFCDVDETEEVTLVSTVEADVKNMKIS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 I SP+ +AL ++G +V +P G ++ + Sbjct: 120 IESPLGKALYKLKVGQKATVASPDGSYDVQVEK 152 >gi|85708976|ref|ZP_01040042.1| transcription elongation factor [Erythrobacter sp. NAP1] gi|85690510|gb|EAQ30513.1| transcription elongation factor [Erythrobacter sp. NAP1] Length = 147 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 2/146 (1%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++ ERP I++ +S A GD SEN +Y ++ + + L + Sbjct: 2 AALKARYDHLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELGYLSRRMKA 61 Query: 73 AEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 V+D + R+ FGATV L +++ +++ IVGD E D GLV SSPIA+AL Sbjct: 62 CRVVDPANQPDRSRVFFGATVELADEDD-ERRTVTIVGDDEQDAGKGLVGWSSPIAKALK 120 Query: 132 GKELGDIISVNAPGGEKTYEILQVLW 157 G +GD+ V PGG K +E++ + + Sbjct: 121 GASVGDLRIVKLPGGLKEWEVMGIDY 146 >gi|168178054|ref|ZP_02612718.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] gi|170755319|ref|YP_001780312.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|169120531|gb|ACA44367.1| transcription elongation factor GreA [Clostridium botulinum B1 str. Okra] gi|182671032|gb|EDT83006.1| transcription elongation factor GreA [Clostridium botulinum NCTC 2916] Length = 154 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 86/153 (56%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ ++ L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|302553811|ref|ZP_07306153.1| transcription elongation factor greA [Streptomyces viridochromogenes DSM 40736] gi|302471429|gb|EFL34522.1| transcription elongation factor greA [Streptomyces viridochromogenes DSM 40736] Length = 165 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKAELEYLTGPARAEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G +A G V++ + + D + + + A S S Sbjct: 70 LTQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASADIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ +IG ++G+ P G+K + +IL+ Sbjct: 129 PLGAGVIGHKVGEDAEYELPNGKKASVKILK 159 >gi|123430789|ref|XP_001307960.1| transcription elongation factor [Trichomonas vaginalis G3] gi|121889615|gb|EAX95030.1| transcription elongation factor, putative [Trichomonas vaginalis G3] Length = 150 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 79/139 (56%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A Sbjct: 12 IFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVEERIA 71 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE ++ A++ID ++ D + G++V + E ++ ++ Y IVG EAD G +S S Sbjct: 72 KLEMMVRNAKIIDEKDLNTDVVNIGSSVKVRELDTMEEDEYTIVGSAEADPLEGKISNES 131 Query: 125 PIARALIGKELGDIISVNA 143 P+ LIG GD++ V Sbjct: 132 PVGSKLIGNRAGDVVEVEV 150 >gi|255282088|ref|ZP_05346643.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] gi|255267407|gb|EET60612.1| transcription elongation factor GreA [Bryantella formatexigens DSM 14469] Length = 191 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R I A+ EARA GDLSEN EY AAK +N NE R+ L Sbjct: 29 LTRSDVRKIEEEIEYRKLVVRKEAIAAVKEARAQGDLSENFEYYAAKRDKNKNESRIRYL 88 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A V+ + G+ + TV + ++ + + Y+IV + SG +SI SP+ Sbjct: 89 ERMLKTARVVSDVSRDGE-VGLNNTVEVYFEDDDETETYKIVTSIRGNSMSGKISIESPM 147 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 RAL+GK+ GD + V Y +++ Sbjct: 148 GRALLGKKAGDRVYVKVNENAGYYVVIK 175 >gi|159898200|ref|YP_001544447.1| transcription elongation factor GreA [Herpetosiphon aurantiacus ATCC 23779] gi|159891239|gb|ABX04319.1| transcription elongation factor GreA [Herpetosiphon aurantiacus ATCC 23779] Length = 155 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK +T +G K++ E+ + R + + I +A+ GD+SE+ EY+ AK Q Sbjct: 1 MTDKPFYLTKEGRAKLEAEIEELETTGRMEVAERIRQAKELGDISESGEYEDAKNKQAFL 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ E+ NI+ A++I+ + G++V++ ++ G+++ + IVG EA + G Sbjct: 61 EGRIREIRNILNNAQMIEED-GDNREVRLGSSVTIRYED-GEEEEWMIVGAAEASPRDGK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPI AL+GK + + P G +L++ Sbjct: 119 ISNESPIGSALMGKRARQKATASTPSGIMKMTVLKIR 155 >gi|256851960|ref|ZP_05557347.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260661470|ref|ZP_05862383.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|282931733|ref|ZP_06337221.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|297205169|ref|ZP_06922565.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] gi|256615372|gb|EEU20562.1| transcription elongation factor GreB [Lactobacillus jensenii 27-2-CHN] gi|260547925|gb|EEX23902.1| transcription elongation factor GreB [Lactobacillus jensenii 115-3-CHN] gi|281304176|gb|EFA96290.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|297149747|gb|EFH30044.1| transcription elongation factor GreA [Lactobacillus jensenii JV-V16] Length = 153 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ I++E+ ++ +RP IKA+ EAR+ GDLSEN+EY AK+ E Sbjct: 1 MVYFQKMTPQGYKLIEEEIANLKK-KRPIKIKALQEARSLGDLSENSEYTEAKKELRHLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + AE+I + ++ G V L ++ Y+IVG EA++++G + Sbjct: 60 SRLRYLDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ A++ KE G ++V AP G I VL Sbjct: 118 SFDSPLGAAIMKKEAGTCVTVEAPAGSYEVTIEDVL 153 >gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1] gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 156 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+ Sbjct: 7 KMTATGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+++ + +++ G V++ + D+ YQ+VG QEA+++ +S +SP Sbjct: 66 LNKQLQYAQIVQPA--DNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 123 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I +AL + D+++VNAP G +++ V Sbjct: 124 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154 >gi|196231612|ref|ZP_03130470.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] gi|196224465|gb|EDY18977.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] Length = 609 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 79/147 (53%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 + +K + E ++ P +K I AR+YGDL EN E++AAKE+Q + R AE E Sbjct: 459 ESMEKKKAEYDDLVNKKIPENVKEIQVARSYGDLRENFEFKAAKEMQRVLSRRRAETERD 518 Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + +A D + +++ G V+L E G Y I+G + D G+VS S +A+A Sbjct: 519 LAQARGTDFANPDTAQVSVGTIVTLKETGDGRTDVYTILGAWDGDPDKGIVSYQSALAQA 578 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 LIG + G+ ++V G++T I ++ Sbjct: 579 LIGHKPGEQVNVPTEHGDRTARIEKIE 605 >gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM 16041] gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM 16041] Length = 168 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 3/150 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +I+ E+ Q +RP I+ + ARA GDLSEN EY AK E R+ Sbjct: 17 KMTRAGYQEIEDEIARLQA-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE+I + + + G +V+L ++ D Y+IVG QEAD+ V+ SP Sbjct: 76 LNKQLQYAEII--APTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQKVAFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 + +A++ + G ++V AP I+++ Sbjct: 134 LGQAIMHQRAGTTVTVQAPQAPYQVTIIKI 163 >gi|331700830|ref|YP_004397789.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] gi|329128173|gb|AEB72726.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL B-30929] Length = 155 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 3/139 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+++I+ E+R + RP IK++++ARA GDLSENAEY AAK E R+ Sbjct: 7 KITKFGYEQIESEIRELEN-SRPAKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+V + + D + G TV + + Y+IVG E D+ G +SI+SP Sbjct: 66 LRKQLQYAQV--YTPSNNDTVEVGKTVKFEFLDDHSTETYEIVGTPEVDIDHGKISIASP 123 Query: 126 IARALIGKELGDIISVNAP 144 I AL+ GDI++V+AP Sbjct: 124 IGSALLNHHSGDIVTVSAP 142 >gi|153941346|ref|YP_001390030.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|152937242|gb|ABS42740.1| transcription elongation factor GreA [Clostridium botulinum F str. Langeland] gi|295318115|gb|ADF98492.1| transcription elongation factor GreA [Clostridium botulinum F str. 230613] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 85/153 (55%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ + L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|261879064|ref|ZP_06005491.1| transcription elongation factor GreA [Prevotella bergensis DSM 17361] gi|270334344|gb|EFA45130.1| transcription elongation factor GreA [Prevotella bergensis DSM 17361] Length = 155 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 89/151 (58%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +G+DK+ +L + ERP+ AI+EA GDLSEN+EY+AAKE Q E ++ E Sbjct: 3 YMSKEGYDKLVAQLHQLEAIERPKASAAIAEAADKGDLSENSEYEAAKEAQVHLENKINE 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ I +A+++D+S +S D + + V + + K Y IV + EA+++ +SI +P Sbjct: 63 MKMTIAQAKIVDMSRLSADEVQIMSKVEMTNLATKKKMTYTIVSESEANLKENKISIHTP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 IA+ L+ K++G+ + + P G I + Sbjct: 123 IAQGLLNKKVGEEVEIKVPRGTLKLRIDNIS 153 >gi|271969724|ref|YP_003343920.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM 43021] gi|270512899|gb|ACZ91177.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM 43021] Length = 166 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+ Sbjct: 11 WLTQEAYDRLKAEFEYLSGPGRVDIAKKIEAAREEGDLKENGGYHAAKDEQGKMEARIFH 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L II A V + G + G TV++ + ++ + + +E+ + S SP Sbjct: 71 LRQIIDSARVGEAPRTEG-VVGPGMTVTVRFEGDDEEVAFLLASREESGAPIDVYSPKSP 129 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ-VLWI 158 + A+ GK++G+ + P G T EIL+ V +I Sbjct: 130 LGSAINGKKIGEKATYTMPNGRSNTVEILEAVPYI 164 >gi|322437290|ref|YP_004219502.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9] gi|321165017|gb|ADW70722.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9] Length = 173 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 88/146 (60%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 K+ +E++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ + Sbjct: 7 AKLAEEIKALEYELTTELPAEIKKAVALGDLSENAEYHMAKQRQVFVNARLGQLKKRMGE 66 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 +++++ + D+ FG+ +++ + ++ YQ+V +E+DV GL+S +SPI RAL+ Sbjct: 67 LAMVNLANIPHDKTGFGSRITVFDSTKDEEIVYQLVTSEESDVSKGLISTTSPIGRALLN 126 Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158 KE+GD ++V P G++ E+L++ I Sbjct: 127 KEVGDTVTVVTPNGKRELEVLKLATI 152 >gi|238855578|ref|ZP_04645880.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3] gi|260664770|ref|ZP_05865621.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|282932736|ref|ZP_06338144.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] gi|238831795|gb|EEQ24130.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3] gi|260561253|gb|EEX27226.1| transcription elongation factor GreB [Lactobacillus jensenii SJ-7A-US] gi|281303146|gb|EFA95340.1| transcription elongation factor GreA 1 [Lactobacillus jensenii 208-1] Length = 153 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ I++E++ ++ RP IKA+ EAR+ GDLSEN+EY AK+ E Sbjct: 1 MVYFQKMTPQGYKLIEEEIKNLKK-SRPIKIKALQEARSLGDLSENSEYTEAKKELRHLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L+ + AE+I + ++ G V L ++ Y+IVG EAD+++G + Sbjct: 60 SRLRYLDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEADLEAGKI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ A++ KE G ++V AP G I +VL Sbjct: 118 SFDSPLGVAIMKKEAGSCVTVEAPAGSYEVTIEEVL 153 >gi|117929094|ref|YP_873645.1| transcription elongation factor GreA [Acidothermus cellulolyticus 11B] gi|117649557|gb|ABK53659.1| transcription elongation factor GreA [Acidothermus cellulolyticus 11B] Length = 162 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++++ E R I + I ARA GDL EN Y AAKE Q E R+ + Sbjct: 9 WLTQEAYERLTAEYNHLIGPARAEIARKIEAARAEGDLRENGGYHAAKEEQGKMEARIRQ 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L I+ A+V + G + G V++ ++ G++ + + +E+ S +SP Sbjct: 69 LRQILENAKVGEPPADDG-VVEPGMVVTVRYED-GEELTFLLGSREESAAGIEAFSPNSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 + AL+GK +GD S P G Sbjct: 127 LGSALLGKRVGDSASYTLPTG 147 >gi|39938788|ref|NP_950554.1| transcription elongation factor [Onion yellows phytoplasma OY-M] gi|39721897|dbj|BAD04387.1| transcription elongation factor [Onion yellows phytoplasma OY-M] Length = 170 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 75 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFNNK 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +SI SP+ + + G ++GD++ V G +I+ V Sbjct: 133 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170 >gi|226947932|ref|YP_002803023.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] gi|226844208|gb|ACO86874.1| transcription elongation factor GreA [Clostridium botulinum A2 str. Kyoto] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 86/153 (56%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ ++ L+S+ Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+++++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVIEII 154 >gi|320109162|ref|YP_004184752.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4] gi|319927683|gb|ADV84758.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4] Length = 157 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 90/146 (61%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 K++++++ + E + I A A GDLSENAEY +AK+ Q + +L+ + Sbjct: 7 KKLEEQIKQLEYELTNELPAEIKRAVALGDLSENAEYHSAKQRQEFVNAHLGQLKKRMAE 66 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 +++++ + DRI FG+T+ + + ++ Y++V +E+DV GL+S +SPI R+L+G Sbjct: 67 LSLVNLANIPHDRIGFGSTIVVFDTTKNEELTYKLVTSEESDVTQGLISTTSPIGRSLVG 126 Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158 K++GD ++V P G++ E+L++ I Sbjct: 127 KQVGDTVTVVTPNGKRELEVLKLTTI 152 >gi|303232444|ref|ZP_07319136.1| putative transcription elongation factor GreA [Atopobium vaginae PB189-T1-4] gi|302481528|gb|EFL44596.1| putative transcription elongation factor GreA [Atopobium vaginae PB189-T1-4] Length = 157 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +TS+G K+ EL WR+ E+ I++ + EAR +GDLSEN+EY AAKE Q+ NE R Sbjct: 4 KELILTSEGRQKLVDELTWREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSQNESR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+ I+ A+V++ ++ G V L++ + G + IVG E D + +S Sbjct: 64 INEIRQILATAKVVEHMAGEL-TVSIGTKVKLID-DKGKTNTFTIVGTTETDSLAHKISN 121 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP LIG +GD I P G+ K Y I ++ Sbjct: 122 ESPAGAELIGHVVGDSIEFATPAGKTKHYTITEIT 156 >gi|170759281|ref|YP_001786034.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] gi|169406270|gb|ACA54681.1| transcription elongation factor GreA [Clostridium botulinum A3 str. Loch Maree] Length = 154 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 85/153 (55%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L +I+ A VID + + + + N +V +A+ + L+S+ Sbjct: 62 QYLLTMISTASVIDERNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S + +AL+GK++GD+ V+APG + T E+L+++ Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154 >gi|296115084|ref|ZP_06833726.1| putative transcription elongation factor greB [Gluconacetobacter hansenii ATCC 23769] gi|295978421|gb|EFG85157.1| putative transcription elongation factor greB [Gluconacetobacter hansenii ATCC 23769] Length = 177 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ KG + ++ EL ++ERPRI++ +S A GD SEN +Y K+ + R+ Sbjct: 18 YISPKGMEVLRHELNTLLRDERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 77 Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L I +A ++D + ++ FGATV+ + + I+G EAD G +S+ S Sbjct: 78 LTKRIEKAIIVDPAQQPRRGQVFFGATVTYA-TERDETRVVTIMGVDEADTVRGEISLIS 136 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+ARAL+ +GD + + P G++ E++ + + Sbjct: 137 PVARALMRARVGDEVRLMTPRGDEMLEVMAISY 169 >gi|119963879|ref|YP_947068.1| transcription elongation factor GreA [Arthrobacter aurescens TC1] gi|119950738|gb|ABM09649.1| putative transcription elongation factor GreA [Arthrobacter aurescens TC1] Length = 164 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD++Q EL R I++ I AR GDL EN Y AAKE Q E R+ + Sbjct: 11 WLTQEAFDRLQAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 L ++ A+V + G + G +V + +GD++ + + + A D + S S Sbjct: 71 LTALLRDAQVGEAPADDG-IVEPGML--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ A+IG + GD +S AP G E EI+ Sbjct: 128 PLGAAIIGHKEGDSLSYVAPNGKEIQVEIVS 158 >gi|330950316|gb|EGH50576.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7] Length = 126 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATV 92 I AR GDL ENAEY AA+E Q + E R+ ++E + A +ID++T+ ++ FG TV Sbjct: 1 IGTARELGDLKENAEYHAAREQQGMVEARIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTV 60 Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 + + + YQIVG+ EAD++ G +S+ SPIARALI KE GD++ V P G YEI Sbjct: 61 EIANVETDESVVYQIVGEDEADIKKGKISVGSPIARALIAKEEGDVVVVKTPSGVIEYEI 120 Query: 153 LQVLWI 158 ++V I Sbjct: 121 IEVRHI 126 >gi|152002554|dbj|BAF73578.1| transcription elongation factor [Onion yellows phytoplasma OY-W] Length = 170 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 75 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 132 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +SI SP+ + + G ++GD++ V G +I+ V Sbjct: 133 ISIESPLGKNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170 >gi|153855392|ref|ZP_01996541.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814] gi|149752212|gb|EDM62143.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814] Length = 167 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+++ ++ D + TV + ++ + + Y++V + GL+SI SP+ Sbjct: 65 ERMLKNAKIVSDTS-KADEVGINNTVEVYFEDDDETETYRLVTSIRGNSLQGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A+ G ++GD + V G + Y +++ Sbjct: 124 GKAIQGHKVGDRVLVKTNGNDGYYIVIK 151 >gi|239929251|ref|ZP_04686204.1| transcription elongation factor GreA [Streptomyces ghanaensis ATCC 14672] gi|291437589|ref|ZP_06576979.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC 14672] gi|291340484|gb|EFE67440.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC 14672] Length = 165 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 1/150 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A+V + G + + D + + + A + S SP Sbjct: 70 LTQLLENAKVGEAPAADGTVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154 + +IG+++G+ P G+ + +IL+ Sbjct: 130 LGTGVIGRKVGENAEYELPNGKTASVKILK 159 >gi|154484187|ref|ZP_02026635.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC 27560] gi|149734664|gb|EDM50581.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC 27560] Length = 165 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +KI++E+ R+ RP I+A+ EARA GDLSEN EY AAK+ +N NEGR+ Sbjct: 2 KLTQSDVEKIKEEIEHRKLVVRPEAIEAVKEARAQGDLSENFEYYAAKKDKNKNEGRIRY 61 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++ A +I + D + TV + ++ + + ++IV D SG +S SP Sbjct: 62 LERVLKTATIISDESAD-DEVGLNNTVQVYFEDDDETETFKIVSTMRGDSISGRISGDSP 120 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQ 154 + AL+G ++GD + V Y +++ Sbjct: 121 MGAALMGHKVGDRVEVKVNEKVSYYVVIK 149 >gi|325962607|ref|YP_004240513.1| transcription elongation factor GreA [Arthrobacter phenanthrenivorans Sphe3] gi|323468694|gb|ADX72379.1| transcription elongation factor GreA [Arthrobacter phenanthrenivorans Sphe3] Length = 164 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL R I++ I +AR GDL EN Y AAKE Q E R+ + Sbjct: 11 WLTQEAFDRLKAELDHLSGPGRAEIVQKIDQARQEGDLKENGGYHAAKEEQGKIEARIRQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 L ++ A V + G + G +V + +GD++ + + + A D + S S Sbjct: 71 LTVLLRDAHVGEAPADDG-IVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ A++G + G+ +S AP G + EIL Sbjct: 128 PLGAAILGHKEGESLSYTAPNGKDIKVEILS 158 >gi|78484860|ref|YP_390785.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] gi|78363146|gb|ABB41111.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2] Length = 154 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF ++ +EL + + +RP I++AIS A A GD SENAEY K+ + ++ Sbjct: 3 YITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRKKELRETDRKIRY 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + V+ D++ FGA L+E G +K Y+IVG EA + +S+ SP Sbjct: 63 LERHLKDINVVRDKPRQRDKVFFGAY-VLLEDEDGQQKQYRIVGGIEARGEENEISVKSP 121 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +A+ALIGK L + V P + Y IL + + Sbjct: 122 VAQALIGKLLDQDVEVLLPDNRKIHYTILDIKY 154 >gi|294155490|ref|YP_003559874.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145] gi|291600011|gb|ADE19507.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145] Length = 160 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 3/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI + + +K ++E ERP I A+ +ARA GDLSENAEY AA++ Q + EGR Sbjct: 8 EKIFLAKETLEKYKKEYDHLVNVERPAIQAALKDARAQGDLSENAEYDAARDKQGVIEGR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+I+ +A +I+ S +I G+TV+ + I+G +A+ +S Sbjct: 68 ITELESILDKAVIIETSK--DGKIGIGSTVTYFSHLDKQQHIVTIMGSHDANPFENKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A A++ +E G+ I V+AP + +IL+++ Sbjct: 126 ESPLAVAMLDREKGEKIEVDAPS-KYMIDILEIV 158 >gi|320008884|gb|ADW03734.1| transcription elongation factor GreA [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTPEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDPDDTVTFLLASREYASADIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK GD P G+K T +I+ Sbjct: 129 PLGTGVNGKRTGDEAEYELPNGKKATVKIVS 159 >gi|302536479|ref|ZP_07288821.1| transcription elongation factor greA [Streptomyces sp. C] gi|302445374|gb|EFL17190.1| transcription elongation factor greA [Streptomyces sp. C] Length = 165 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQAAYDQLKAELDYLSGPARTEIAMKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V SG+ +A G V++ + + D + + + A S S Sbjct: 70 LTQLLENAKVGTAPAASGE-VAPGTLVTIAFDGDEDDTLEFLLASREYASDDFETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 P+ + GK++G+ P G+K T IL V Sbjct: 129 PLGAGVNGKKVGEDAQYELPNGKKATVRILAVK 161 >gi|297192437|ref|ZP_06909835.1| transcription elongation factor [Streptomyces pristinaespiralis ATCC 25486] gi|197717974|gb|EDY61882.1| transcription elongation factor [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLDNAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASADIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G+K +IL Sbjct: 129 PLGVGVNGKKVGDDAEYELPNGKKAAVKILA 159 >gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23] Length = 165 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+ Sbjct: 17 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+ K G ++V AP +I++V Sbjct: 134 LGQALLHKTAGTTVTVEAPQSLYKVKIVKVE 164 >gi|254381990|ref|ZP_04997353.1| transcription elongation factor greA [Streptomyces sp. Mg1] gi|194340898|gb|EDX21864.1| transcription elongation factor greA [Streptomyces sp. Mg1] Length = 165 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQAAYDQLKAELDYLSGPARTEIATKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + S +A G V + + + D + + + A + S S Sbjct: 70 LTQLLENAKVG-TAPASDGVVAPGTLVKIAFDGDEDDTMEFLLASREYASSEFETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 P+ ++ K++G+ P G+K T +IL V Sbjct: 129 PLGSGVLNKKIGEDAEYELPNGKKATVKILDVK 161 >gi|325283061|ref|YP_004255602.1| transcription elongation factor GreA [Deinococcus proteolyticus MRP] gi|324314870|gb|ADY25985.1| transcription elongation factor GreA [Deinococcus proteolyticus MRP] Length = 155 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 KI +T +G+D++++ L + R +I + + A GDL E+A Y A+ Q+ NE R+ Sbjct: 5 KISITQRGYDRLKETLHHLKTTRREQISENMGRAIEDGDLRESAAYDEARMEQSENEARI 64 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE+ + RA +++ G + ++ ++ +++VG EADV++G VS + Sbjct: 65 RDLEDQLERAVIVEEDAGGGAG----LGAKVKVRSGKTERTFELVGTFEADVRAGKVSDA 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI +AL+G G + V P G+ +E+L+V + Sbjct: 121 SPIGQALLGAREGAKVKVPGPKGDMEFEVLEVTY 154 >gi|312868578|ref|ZP_07728773.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] gi|311095875|gb|EFQ54124.1| transcription elongation factor GreA [Lactobacillus oris PB013-T2-3] Length = 168 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +I+ E+ Q +RP I + ARA GDLSEN EY AK E R+ Sbjct: 17 KMTKAGYQEIEDEIARLQA-QRPAKIDQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + +E+I + ++ G TV+L + D YQIVG QEAD+ VS SP Sbjct: 76 LNKQLQYSEIITPA--DAKQVDLGTTVTLRFDDDNDVVTYQIVGKQEADLAKQKVSFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RA++ + ++V AP I+++ Sbjct: 134 LGRAIMHQPAATTVTVQAPQSSYQVTIIEIS 164 >gi|116669728|ref|YP_830661.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24] gi|116609837|gb|ABK02561.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24] Length = 164 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ + Sbjct: 11 WLTQEAFDRLKAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 L ++ A V + S + G +V + +GD++ + + + A D + S S Sbjct: 71 LTVLLRDAHVGE-SPADDGIVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ A++G + GD +S AP G + T EIL Sbjct: 128 PLGSAIVGHKEGDKLSYTAPNGKDITVEILS 158 >gi|256833112|ref|YP_003161839.1| transcription elongation factor GreA [Jonesia denitrificans DSM 20603] gi|256686643|gb|ACV09536.1| transcription elongation factor GreA [Jonesia denitrificans DSM 20603] Length = 160 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T + +D+++ EL R I I++AR GDL EN Y AA+E Q NE Sbjct: 4 ANVTWLTQEAYDRLRAELDHLSGPARQEITNRIAQARDEGDLKENGGYHAAREEQGKNEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLV 120 R+ ELE + + D + + + + +GD+ + + + AD + Sbjct: 64 RIHELEEKLRNIRIGTPPD---DGVVEPGMIVVADV-AGDEMTFLLGSREIADTTDLDVY 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 S SP+ A+ G+++G+ + AP G + E++ Sbjct: 120 SEQSPLGSAINGRKVGESTAYTAPNG-RDIEVV 151 >gi|289178779|gb|ADC86025.1| GreA [Bifidobacterium animalis subsp. lactis BB-12] Length = 203 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 8/153 (5%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ Sbjct: 51 VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 110 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSI 122 EL + A++I+ + G+ V++ + G++ Y I G ++ V + +S Sbjct: 111 ELIVKLRNAKIIEAPK--AGEVGNGSLVTI--ELGGNEMQYVI-GSRDITVATDYDVISP 165 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SPI A+IG ++GD+++ AP G E + I + Sbjct: 166 ESPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 198 >gi|225028128|ref|ZP_03717320.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353] gi|224954598|gb|EEG35807.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353] Length = 165 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T + DK++ E+ R+ E RP +++ + EARA+GDLSEN EY AAK+ +N NE R+ Sbjct: 2 KHKLTQQDVDKMKAEIEHRKVEVRPELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE +I E+++ + + D++ TV+L + + + V D VSI Sbjct: 62 RYLERMIRTCEIVEDHS-NADQVGLNKTVTLYFEEDDETDKFSFVTTVLVDTMQNRVSIE 120 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP+ +AL+G + G+ + + EI ++ Sbjct: 121 SPLGKALLGHKKGERVYIPVNAQYGYYVEIKEIE 154 >gi|302874290|ref|YP_003842923.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B] gi|307689446|ref|ZP_07631892.1| transcription elongation factor GreA [Clostridium cellulovorans 743B] gi|302577147|gb|ADL51159.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B] Length = 154 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ Sbjct: 1 MNNK--LTLENMKKLQEELEYRMTVKRAEIAKEKLIAAAHGDRSENAEYKEACANYREND 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L +I+ A +ID T+ + + + +V + D ++ + Sbjct: 59 NRIQYLLTMISTATLIDEHTVDKSTLGINTKAKVRFIEDDYEDVLTLVTTMDLDPENMYI 118 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI S + +AL GK+ G+I++VNAP T EIL++L Sbjct: 119 SIESDLGKALSGKKAGEIVTVNAPEDIYTVEILEIL 154 >gi|197294551|ref|YP_001799092.1| transcription elongation factor GreA [Candidatus Phytoplasma australiense] gi|171853878|emb|CAM11840.1| Transcription elongation factor [Candidatus Phytoplasma australiense] Length = 156 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 1 MKNKIYELTQPGILKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ E++NI+ V+ +S I G VSL NSG ++ +++V E+D S Sbjct: 61 EYRITEIQNILKNVRVVKVSK--DKEINIGKKVSLKMLNSGTEEEFELVSTLESDPFSNK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 +SI SP+ + + G E+GD++ + + G K +IL V Sbjct: 119 ISIESPLGKKIKGHEIGDVVFITSETGTKFKVKILDVK 156 >gi|295094872|emb|CBK83963.1| Transcription elongation factor [Coprococcus sp. ART55/1] Length = 165 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +K++QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKKDIEKMEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A++ID ++ D + TV++ ++ +++ Y++V ADV G VS SPI Sbjct: 65 DRLVRTADIIDDTSAD-DEVGIDNTVTVYFEDDDEEETYRVVTSVRADVLDGRVSNVSPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 RA++G ++GD + V GE Y ++ Sbjct: 124 GRAIMGHKVGDRVQVVPEKGEPYYLVI 150 >gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3] gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A] gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3] gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A] Length = 192 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+ Sbjct: 44 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 102 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +A++ + G ++V AP +I++V Sbjct: 161 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 191 >gi|322435432|ref|YP_004217644.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9] gi|321163159|gb|ADW68864.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9] Length = 200 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++++ E + ++RP +++ ++ A + GD SENA+YQ +K +GR+ Sbjct: 21 KNYITPGGIERLKAERHFLLTKDRPAVVQVVAWAASNGDRSENADYQYSKRRLRQIDGRV 80 Query: 64 AELENIITRAEVIDISTMSGDR----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 L I AEVID + FGATV +G + IVG E ++ Sbjct: 81 RFLTKRIEAAEVIDPEAPRTGQRATRAFFGATVRYANA-AGIVRVVSIVGTDEVNLDRNH 139 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S +SP+ RAL+ D + ++APGG +T +L+V + Sbjct: 140 ISWASPLGRALMKAGEDDEVVLHAPGGTETLTVLEVRY 177 >gi|227494766|ref|ZP_03925082.1| transcription elongation factor GreA [Actinomyces coleocanis DSM 15436] gi|226831766|gb|EEH64149.1| transcription elongation factor GreA [Actinomyces coleocanis DSM 15436] Length = 159 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + + +T + +D++++EL R +R I I AR GDL EN Y AA++ Q +NE Sbjct: 1 MSESLWLTQEAYDRLKEELEHRSTIKRQEIATKIDNARQEGDLKENGGYHAARDEQAMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119 R+ +L NI+ A V+ + + G V+ S ++ ++G + A + L Sbjct: 61 TRINQLTNILRDA-VVGATPADDGIVEAGMVVTAEIMGS---QSTFLLGSRMAGSEDDLE 116 Query: 120 -VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SI +PI +AL G ++G+ +S AP G E +IL Sbjct: 117 VYSIDAPIGQALNGHKVGETVSYFAPNGREIEVKILD 153 >gi|15806181|ref|NP_294886.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6458901|gb|AAF10735.1|AE001965_9 transcription elongation factor [Deinococcus radiodurans R1] Length = 158 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 87/155 (56%), Gaps = 1/155 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + +T +G ++++++L++ + R +I + + +A GDL E+A Y A+ Q+ NE + Sbjct: 4 EPVRMTRQGKERLEEQLQYLKTTRREQISEYMGKAIEDGDLRESAAYDEARMQQSENEAK 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AE+E + RA+++ + + GA +VE ++ +IVG E DV G +S Sbjct: 64 IAEIEAQLERAQIMKDEEIDTSAVGVGAR-VIVEDAQNKQRTLEIVGSFEVDVLKGKISD 122 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SP+ +AL+GK G+ P G + +++ V + Sbjct: 123 ASPMGQALLGKRPGESAVWPGPKGNVSLKVISVEY 157 >gi|302558762|ref|ZP_07311104.1| transcription elongation factor GreA [Streptomyces griseoflavus Tu4000] gi|302476380|gb|EFL39473.1| transcription elongation factor GreA [Streptomyces griseoflavus Tu4000] Length = 165 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNKLKVELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G +A G V++ + + D + + + A + S S Sbjct: 70 LTQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ ++G ++G+ P G+K +IL+ Sbjct: 129 PLGSGVMGHKVGEDAEYELPNGKKAMVKILE 159 >gi|296128797|ref|YP_003636047.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM 20109] gi|296020612|gb|ADG73848.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM 20109] Length = 161 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ +EL + Q R I I+ AR GDL EN Y AA+E Q E R+ E Sbjct: 9 WLTQEAYDRLTEELEYLQTVGRKEITDRIAAARDEGDLKENGGYHAAREEQAKQEARIRE 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISS 124 L+ + ++ + G V+ V +GD+ + + + A + S +S Sbjct: 69 LQAKLRNVQIGTPP--DDGVVEPGMVVTAV--VAGDEMTFLLGSREIAGTADIDVFSPTS 124 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEI 152 P+ A+ G ++GD + AP G + EI Sbjct: 125 PLGAAIHGHKVGDSTTYEAPNGRQIPVEI 153 >gi|29829843|ref|NP_824477.1| transcription elongation factor GreA [Streptomyces avermitilis MA-4680] gi|81719423|sp|Q82I57|GREA_STRAW RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|29606952|dbj|BAC71012.1| putative transcription elongation factor [Streptomyces avermitilis MA-4680] Length = 165 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G +A G V++ + + D ++ + + A S S Sbjct: 70 LTQLLENAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLDFLLASREYASADIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++G+ P G+ + +IL+ Sbjct: 129 PLGSGVNGKKVGEDAQYELPNGKLASVKILK 159 >gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum SK46] gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum SK46] Length = 170 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +DK++ EL E RP I I+E R GDL ENA Y AA+E Q E R+ Sbjct: 10 WLTQESYDKLKSELEAL-YENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRY 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123 LE+++ RA V +I SG + + + D + + I G ++ S Sbjct: 69 LEDLLQRATVGEIPQESGVALVGTVVHVYYDGDEDDTETFLIGTRGADSSNPNLETYSTD 128 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SP+ +AL+G + G+ + +P G E + +++ Sbjct: 129 SPLGKALVGAKEGETRTYTSPSGDEVSVTVIK 160 >gi|182415840|ref|YP_001820906.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177843054|gb|ACB77306.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 616 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ V+ +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + Sbjct: 456 EQLIVSKASYERKREEYETIVSKKIPENSKAIAAAREHGDLRENSEYKMAKQEQQVLMAH 515 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 LE + RA + D S D+++ G V + G Y ++G + D + +S Sbjct: 516 KTNLERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISY 575 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +P AL+GK+ GD+I+V ++ Y I+ + Sbjct: 576 KTPFGAALLGKKTGDVINVKTDASDEDYAIVSI 608 >gi|213163601|ref|ZP_03349311.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 109 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 47/109 (43%), Positives = 78/109 (71%), Gaps = 1/109 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVG 109 R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVG Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVG 109 >gi|319936519|ref|ZP_08010934.1| transcription elongation factor [Coprobacillus sp. 29_1] gi|319808411|gb|EFW04966.1| transcription elongation factor [Coprobacillus sp. 29_1] Length = 194 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K D ++ E+ R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 32 LTQKDIDAMKAEIEHRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI Sbjct: 92 ERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +AL+G ++GD + + Y +++ Sbjct: 151 GKALLGHKVGDKVWIPINANAGYYVVVK 178 >gi|256420286|ref|YP_003120939.1| transcription elongation factor GreA [Chitinophaga pinensis DSM 2588] gi|256035194|gb|ACU58738.1| transcription elongation factor GreA [Chitinophaga pinensis DSM 2588] Length = 157 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 95/156 (60%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M VT + D++++EL + + + R I +AI+EAR GDL ENAEY AAKE Q ++E Sbjct: 1 MSGINYVTKETLDQMREELSFLKTKGRAEIARAIAEAREKGDLKENAEYDAAKEAQGMHE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++A LE+ I A +++ ++ +++ V++ + YQ+V ++EAD++ + Sbjct: 61 AKVAILESAIATARIVEADSIDTSKVSILCKVTITNMANKKTVTYQLVSEKEADLKLNKI 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S++SPI + L+GK +G+I V+AP G ++I + Sbjct: 121 SVTSPIGKGLLGKAVGEIADVHAPNGSLKFKIENIT 156 >gi|313674502|ref|YP_004052498.1| transcription elongation factor greb [Marivirga tractuosa DSM 4126] gi|312941200|gb|ADR20390.1| transcription elongation factor GreB [Marivirga tractuosa DSM 4126] Length = 145 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 1 MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 M KIP +T++GF K+++E + RP + +S A + GD SENA+ Sbjct: 1 MRRKIPESTLSKLNRSQMITAEGFQKLREEHDHLWKVVRPDVTAKVSWAASLGDRSENAD 60 Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 Y K+ +GR+ L I +VI ++ FGA V + + G KK +IV Sbjct: 61 YHYNKKRLREIDGRIRYLRKCIDNFKVIHYHPHQEGKVMFGAWVEVENIDRGLKKRLRIV 120 Query: 109 GDQEADVQSGLVSISSPIARALIGK 133 G +E +S+ SP+A+AL+ K Sbjct: 121 GYEELIGNKDYISMDSPLAQALLNK 145 >gi|119715224|ref|YP_922189.1| transcription elongation factor GreA [Nocardioides sp. JS614] gi|119535885|gb|ABL80502.1| transcription elongation factor GreA [Nocardioides sp. JS614] Length = 167 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 3/146 (2%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T +DK++ EL + R II IS AR GDL EN Y AA+E Q EGR+ Sbjct: 10 VWLTQDAYDKLRAELESLKGPVRQEIIARISSARDEGDLKENGAYHAAREEQGKVEGRIR 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEK-NSGDKKNYQIVGDQEADVQ-SGLVSI 122 +LE+++ RAEV + G + G V+ ++ D+ ++G +E + + + S Sbjct: 70 QLEDVLRRAEVGETPPNDG-VVEPGMVVTYRFVGDAEDEVETFLLGAREIEPEGLTVYSP 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148 SP+ A+ GK GD +S AP G++ Sbjct: 129 QSPLGSAINGKAKGDTVSYLAPNGKE 154 >gi|260438639|ref|ZP_05792455.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] gi|292809233|gb|EFF68438.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+Q+E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTENDIKKMQEEIEYRKVVLRKELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A VI + D + V L ++ + + ++IV + +GL+S SPI Sbjct: 65 EKMIKTANVISDESAD-DEVGLNNKVELYFEDDDETETFKIVTTVRGNSLNGLISNESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++ + GD + V G Y +++ Sbjct: 124 GKAVLSHKAGDRVFVEVSPGNGYYVVIK 151 >gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM 1112] Length = 156 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+ Sbjct: 8 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 67 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +A++ + G ++V AP +I++V Sbjct: 125 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 155 >gi|85057700|ref|YP_456616.1| transcription elongation factor GreA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789805|gb|ABC65537.1| transcription elongation factor GreA [Aster yellows witches'-broom phytoplasma AYWB] Length = 156 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L Sbjct: 1 MNNKIYELTQTGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 61 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +SI SP+ + + G ++GDI+ V + G +I+ V Sbjct: 119 ISIESPLGQNIKGHQIGDIVFVTSETGNTFRVKIVDVQ 156 >gi|315650384|ref|ZP_07903455.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] gi|315487311|gb|EFU77622.1| transcription elongation factor GreA [Eubacterium saburreum DSM 3986] Length = 168 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T + KI+ E+ R+ RP++I+A+ EARA GDLSEN EY AAK +N NE Sbjct: 5 MAET--LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAQGDLSENFEYYAAKREKNKNE 62 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ V + T D + G V L ++ + + ++IV D G + Sbjct: 63 SRINYLERMLKFCHVYEDKTND-DEVGIGKEVELYFEDDDESEKFKIVTSIRGDSLKGRL 121 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI SPI +A+IG++ GD + V +I+ + Sbjct: 122 SIESPIGKAIIGRKKGDRVKVAVGNRGYFVKIMSIE 157 >gi|210611522|ref|ZP_03288942.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787] gi|210151969|gb|EEA82976.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787] Length = 194 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K D ++ E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 32 LTQKDIDAMKAEIEYRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI Sbjct: 92 ERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +AL+G ++GD + + Y +++ Sbjct: 151 GKALLGHKVGDKVWIPINANAGYYVVVK 178 >gi|218960396|ref|YP_001740171.1| putative transcription elongation factor [Candidatus Cloacamonas acidaminovorans] gi|167729053|emb|CAO79964.1| putative transcription elongation factor [Candidatus Cloacamonas acidaminovorans] Length = 159 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G ++Q+ + ERP +IKA++ AR +GDLSENAEY+AA+E Q + + L Sbjct: 7 ITKTGMQRLQKRINELLA-ERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYL 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSI 122 +VID S D + FG + N+ + Y +VG +E + + VSI Sbjct: 66 RRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSI 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPI +AL+ K++G+I V AP GE+ +I ++ Sbjct: 126 VSPIGKALLSKKIGEIAIVKAPIGERKLKIREIK 159 >gi|256848431|ref|ZP_05553873.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] gi|256714698|gb|EEU29677.1| transcription elongation factor GreB [Lactobacillus coleohominis 101-4-CHN] Length = 155 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +G+ +I+ ++ ++ ERP I + ARA GDLSEN EY AK E R+ Sbjct: 8 KMTPEGYHEIELQIEELKK-ERPTKIARLKAARALGDLSENTEYSTAKRDLRHLESRLRY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L +T A+VI G I G+TV++ + + YQIVG EAD+ + ++ SP Sbjct: 67 LNKQLTYAKVI--QHRDGGPIDLGSTVTIEFLDDHSQITYQIVGTHEADLANHKLAFDSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +A++GK +++V AP +I+ V Sbjct: 125 LGQAMMGKMANLVVNVVAPDSTYQVKIINVK 155 >gi|332654125|ref|ZP_08419869.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] gi|332517211|gb|EGJ46816.1| transcription elongation factor GreA [Ruminococcaceae bacterium D16] Length = 167 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 86/137 (62%), Gaps = 1/137 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K + +++EL R+ RP++++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTQKDLELMRKELDHRRIVLRPQLLEAVKEARAFGDLSENFEYKAAKQEKNRNESRIRFL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A VI + S D++ V++ ++ +++ YQIV D GL+S SP+ Sbjct: 65 ENMIKTAVVISDQSGS-DQVGLYDKVTVYMEDDDEEEVYQIVTTMRQDALKGLISKESPV 123 Query: 127 ARALIGKELGDIISVNA 143 R L+G+ +GD + + Sbjct: 124 GRCLLGRRVGDRVHIQV 140 >gi|227545317|ref|ZP_03975366.1| transcription elongation factor [Lactobacillus reuteri CF48-3A] gi|300908606|ref|ZP_07126069.1| transcription elongation factor [Lactobacillus reuteri SD2112] gi|227184713|gb|EEI64784.1| transcription elongation factor [Lactobacillus reuteri CF48-3A] gi|300894013|gb|EFK87371.1| transcription elongation factor [Lactobacillus reuteri SD2112] Length = 192 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ +I++++ +Q +RP I + ARA GDLSEN EY AK E R+ Sbjct: 44 KMTANGYHEIEEQIAKLKQ-QRPAKIGQLKAARALGDLSENTEYSTAKRELRHLESRLRY 102 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV + ++ +++ Y IVG QEAD+ +S SP Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +AL+ K G ++V AP +I+++ Sbjct: 161 LGQALLHKTAGITVTVEAPQSSYKVKIVKIE 191 >gi|225570871|ref|ZP_03779894.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM 15053] gi|225160333|gb|EEG72952.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM 15053] Length = 185 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ Sbjct: 20 REQLTKSDVQKIKEEIEYRKLVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRI 79 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ A ++ ++ D + TV L + + + Y++V + G +SI Sbjct: 80 RYLEKMLKTARIVSDTSRE-DEVGINNTVELYFEEDDETEKYRLVTSVRGNSLEGRISIE 138 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SP+ +A++G + G+ + V A GG Y ++ Sbjct: 139 SPLGKAILGHKEGERVKVTANGGSGYYVVI 168 >gi|240147556|ref|ZP_04746157.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|257200241|gb|EEU98525.1| transcription elongation factor GreA [Roseburia intestinalis L1-82] gi|291538590|emb|CBL11701.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4] Length = 167 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VI + + D + TV++ + +++ Y++V + L+S SP+ Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKLVTTVRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G ++GD + V +Y ++ Sbjct: 124 GKALLGHKVGDRVEVAV-NENYSYYVV 149 >gi|47459270|ref|YP_016132.1| transcription elongation factor [Mycoplasma mobile 163K] gi|47458599|gb|AAT27921.1| transcription elongation factor [Mycoplasma mobile 163K] Length = 174 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K+ +T + + + EL ERP+II+ I +ARA GDLSEN+EY +A+E Q E R+ Sbjct: 22 KLYLTLESVETYKTELNNLINVERPKIIEEIKDARAQGDLSENSEYDSAREKQGQIEDRI 81 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 E+E I+ I ++ S ++ G+ V L ++ + +IVG E D +S S Sbjct: 82 KEIEYILENYTEIQNASKSK-KVTIGSKVLLKRIDNKKQFEVKIVGTLETDPFLNKISYS 140 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SPI++ ++G ++GD+ +NAP + EIL+ Sbjct: 141 SPISQGIMGSKIGDVREINAPT-KYEVEILK 170 >gi|254389866|ref|ZP_05005089.1| transcription elongation factor greA [Streptomyces clavuligerus ATCC 27064] gi|294814692|ref|ZP_06773335.1| Transcription elongation factor [Streptomyces clavuligerus ATCC 27064] gi|326443074|ref|ZP_08217808.1| transcription elongation factor GreA [Streptomyces clavuligerus ATCC 27064] gi|197703576|gb|EDY49388.1| transcription elongation factor greA [Streptomyces clavuligerus ATCC 27064] gi|294327291|gb|EFG08934.1| Transcription elongation factor [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEHLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLDSAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASSNIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK++GD P G + +IL Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGSQAMVKILA 159 >gi|220912010|ref|YP_002487319.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus A6] gi|219858888|gb|ACL39230.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus A6] Length = 164 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ + Sbjct: 11 WLTQEAFDRLKAELDQLSGPGRAEIVQKIDAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 L ++ A V + S + G +V + +GD++ + + + A D + S S Sbjct: 71 LTVLLRDAHVGE-SPADDGIVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ A++G + G+ +S AP G + EIL Sbjct: 128 PLGSAILGHKEGETLSYVAPNGKDIKVEILS 158 >gi|317124131|ref|YP_004098243.1| transcription elongation factor GreA [Intrasporangium calvum DSM 43043] gi|315588219|gb|ADU47516.1| transcription elongation factor GreA [Intrasporangium calvum DSM 43043] Length = 160 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + +D+++ EL R I + I EAR GDL EN Y AA+E Q E R+ +L Sbjct: 9 LTKEAYDRLKAELDQLTGVGRIEIARKIEEAREEGDLKENGGYHAAREEQGKMEARIRQL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++++ A V + G + G V++ + G+++ + + + AD + S SP+ Sbjct: 69 QDLLHNAVVGETPPDDG-VVEPGMVVTV--ELFGEQEKFLLGSREIADDDLQVFSEKSPM 125 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQ 154 A+ GK +GD S AP G+ +IL Sbjct: 126 GAAVNGKSVGDTTSYEAPTGKTIEVKILD 154 >gi|306824895|ref|ZP_07458239.1| transcription elongation factor GreA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433106|gb|EFM36078.1| transcription elongation factor GreA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 160 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKKKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEEEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GDI+++ P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDIVTIETPVGSYDVKILKVE 157 >gi|163814034|ref|ZP_02205426.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759] gi|158450483|gb|EDP27478.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759] Length = 165 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +KI+QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTQKDIEKIEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A++I+ S D + TV++ ++ +++ Y++V AD+ GLVS SPI Sbjct: 65 DRLVRTADIIE-DNSSDDEVGIDNTVTVYFEDDDEEETYRVVTSVRADILEGLVSNVSPI 123 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +A++G ++GD + V G+ I ++ Sbjct: 124 GKAILGHKVGDRVQVVPERGDPYFITIRKIE 154 >gi|229826123|ref|ZP_04452192.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC 49176] gi|229789696|gb|EEP25810.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC 49176] Length = 167 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T ++++E+ R+ R I+A+ EARA GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKNDIRRLEEEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKRHKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A++I+ + S D + TV++ + +++ +++V D + L++I SP+ Sbjct: 65 EKMIKTAKIIEDDS-SEDEVGPDNTVTVYFIDDDEEETFKLVTAVRGDSLNNLITIDSPL 123 Query: 127 ARALIGKELGDIISVNA 143 +AL+ K++GD + V Sbjct: 124 GKALLKKKVGDKVYVKV 140 >gi|331003037|ref|ZP_08326549.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413081|gb|EGG92456.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon 107 str. F0167] Length = 164 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + KI+ E+ R+ RP++I+A+ EARA+GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAHGDLSENFEYYAAKREKNKNESRINYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ V + T D++ V L + + + ++IV D G +SI SPI Sbjct: 65 ERMLRFCNVYEDKTED-DQVGIDKVVELYFEEDDESEKFKIVTSIRGDSLEGRLSIESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++GK+ GD + V G +I+ + Sbjct: 124 GKAIVGKKKGDRVRVPVGDGGYFVKIMSIE 153 >gi|297157679|gb|ADI07391.1| transcription elongation factor GreA [Streptomyces bingchenggensis BCW-1] Length = 165 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + + +A G V++ + + D + + + A S S Sbjct: 70 LTQLLQHAKVGE-APADTGVVAPGMVVTIAFDGDPDDSLTFLLASREYASSDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ + GK++G+ S P G + +IL+ Sbjct: 129 PLGSGVNGKKVGEDASYELPNGRTASVKILE 159 >gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum IFO 3956] gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956] Length = 160 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ I++++ +Q +RP +I + ARA GDLSEN EY AK Sbjct: 1 MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADV 115 E R+ L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A + Sbjct: 60 LESRLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++ SP+ AL G G ++V+AP I+ V Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158 >gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC 14931] gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN] gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC 14931] gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN] Length = 160 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 + KI +T G+ I++++ +Q +RP +I + ARA GDLSEN EY AK Sbjct: 1 MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADV 115 E R+ L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A + Sbjct: 60 LESRLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++ SP+ AL G G ++V+AP I+ V Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158 >gi|319938683|ref|ZP_08013047.1| transcription elongation factor greA [Streptococcus anginosus 1_2_62CV] gi|319811733|gb|EFW07999.1| transcription elongation factor greA [Streptococcus anginosus 1_2_62CV] Length = 160 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157 >gi|187250809|ref|YP_001875291.1| transcription elongation factor [Elusimicrobium minutum Pei191] gi|186970969|gb|ACC97954.1| Transcription elongation factor [Elusimicrobium minutum Pei191] Length = 156 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 90/156 (57%), Gaps = 1/156 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K ++ K ++K++++L ++ + ++ I EA GDL ENAEY AAK Q Sbjct: 1 MEKYYLSRKNYEKLREDLTALKEIK-AKLSLEIGEAAQQGDLRENAEYAAAKSRQEETLV 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++ +LE + A++ D + GATV++ + ++ Y +VG E++ + GL+S Sbjct: 60 KIQDLEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+A +++GK+ G+ P G+K Y+++++ + Sbjct: 120 VQSPLAVSILGKKEGEEFEAVLPKGKKMYKLVKLEY 155 >gi|291536540|emb|CBL09652.1| transcription elongation factor GreA [Roseburia intestinalis M50/1] Length = 167 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VI + + D + TV++ + +++ Y+IV + L+S SP+ Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKIVTTVRGNSLKNLISNESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +AL+G ++GD + V +Y ++ Sbjct: 124 GKALLGHKVGDRVEVAV-NENYSYYVV 149 >gi|154495827|ref|ZP_02034523.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC 29799] gi|150275025|gb|EDN02073.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC 29799] Length = 197 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K +++EL +R+ RP++++A+ EAR +GDLSEN EY+AAK+ +N NE R+ L Sbjct: 35 LTRKDLQMMREELDYRRITLRPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFL 94 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 EN+I A VI + D + V++ + + + YQ+V D G +S SP+ Sbjct: 95 ENMIRTAVVI-SDQAAPDTVGLYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPV 153 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 AL+GK +GD I + Y +++ Sbjct: 154 GSALLGKRVGDRIYIQVNDNYGYYVVIK 181 >gi|269925131|ref|YP_003321754.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC BAA-798] gi|269788791|gb|ACZ40932.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC BAA-798] Length = 159 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 5/157 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ +T +G ++++EL + ER +I I EA+ GD+SE+ EY+ AK Q EGR Sbjct: 5 ERVRLTEQGLKELREELERLRTVERAKISARIREAKEGGDISESGEYEDAKHSQAFLEGR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119 + ELE ++ AEVID S + G+ V++ + +G Y IV EA Sbjct: 65 IKELEKLLANAEVIDRSAQPAGTVGLGSKVTV--EENGRTYTYTIVDGAEAGRGRDGEVR 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S S + AL+G+ +GD + V P G+ T++IL V Sbjct: 123 ISSKSAVGSALLGRRVGDSVEVEVPAGKLTFKILSVE 159 >gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM 20016] Length = 165 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+ Sbjct: 17 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +A++ + G ++V AP +I++V Sbjct: 134 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 164 >gi|254498603|ref|ZP_05111322.1| transcription elongation factor GreA [Legionella drancourtii LLAP12] gi|254352143|gb|EET10959.1| transcription elongation factor GreA [Legionella drancourtii LLAP12] Length = 139 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 85/116 (73%), Gaps = 1/116 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P+T +G + +++EL+ + +RPRI+++I+ ARA+GDL ENAEY AA+E Q+ NEG Sbjct: 22 MNKHPMTIQGAEALKEELQRLKFVDRPRIVESIATARAHGDLKENAEYHAAREQQSFNEG 81 Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ ELE ++ A++IDIS + + ++ FG+TV++ + + YQIVG+ EAD++ Sbjct: 82 RIQELEAKLSNAQIIDISKLPNNGKVVFGSTVTVCHVATDAQLTYQIVGEDEADIK 137 >gi|160901647|ref|YP_001567228.1| transcription elongation factor GreA [Petrotoga mobilis SJ95] gi|189042243|sp|A9BFC0|GREA_PETMO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|160359291|gb|ABX30905.1| transcription elongation factor GreA [Petrotoga mobilis SJ95] Length = 159 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 92/159 (57%), Gaps = 3/159 (1%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +++ +T +G++K+++E ++ + + I EAR GDLSEN+EY+ AK Q + Sbjct: 1 MAEQVYQLTREGYEKLKREREELKKRLMGEVAERIKEARELGDLSENSEYEEAKNEQGMI 60 Query: 60 EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ E++ I+ AE+I+ ++ G V + + ++ + +V QEA+++ Sbjct: 61 DSRIKEIDYILDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEEN 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +SI SPI R+L+G++ G++I++ G K EI ++ Sbjct: 121 KISIESPIGRSLLGRKKGEVINIKTARGSSKKIEIKEIS 159 >gi|282865260|ref|ZP_06274312.1| transcription elongation factor GreA [Streptomyces sp. ACTE] gi|282559733|gb|EFB65283.1| transcription elongation factor GreA [Streptomyces sp. ACTE] Length = 165 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 3/150 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A S S Sbjct: 70 LTQLLEHAKVGEPPADDG-VVEPGMVVTIAFDGDPDDTLTFLLASREYATGDIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEIL 153 P+ + GK +G+ P G+K T +IL Sbjct: 129 PLGTGVNGKRMGEEAEYELPNGKKATVKIL 158 >gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS] gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS] gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS] gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS] gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS] gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS] Length = 164 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + SG + + + D + + I ++A D + + S + Sbjct: 67 LQELLNNAKVGEAPKQSGVALPGSVVKVYYDGDEKDTETFLIGTREQAVNDGKLEVYSPA 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ ALI ++G+ + P G T E+ Sbjct: 127 SPLGAALIDAKVGETRTYTVPSGS-TVEV 154 >gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL B-59395] gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL B-59395] Length = 162 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTPESYDRLKGELDSLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L++++ +A+V + SG + + + DK+ + I +E + S SSP Sbjct: 67 LQDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEGSGDIEIYSPSSP 126 Query: 126 IARALIGKELGDIISVNAPGG 146 + ALI ++G+ + P G Sbjct: 127 LGAALIDAKVGESRTYTVPSG 147 >gi|291561619|emb|CBL40418.1| Transcription elongation factor [butyrate-producing bacterium SS3/4] Length = 167 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMEEEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+V+ + D + TV + ++ + + Y+IV + GL+S SP+ Sbjct: 65 ERMIRTAKVVSDESKD-DEVGLYNTVDVYFEDDDETETYKIVTTIRGNSLKGLISSESPL 123 Query: 127 ARALIGKELGDIISVNA 143 RAL+G ++GD + V Sbjct: 124 GRALLGHKVGDRVHVQV 140 >gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] gi|166200678|sp|A0R2X1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] Length = 164 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQEAFDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123 L+ ++ A+V + SG + + + D + + I QE +D + + S + Sbjct: 67 LQELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+ ++G+ + P G Sbjct: 127 SPLGGALLDAKVGESRTYTVPSG 149 >gi|309810926|ref|ZP_07704726.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185] gi|308435080|gb|EFP58912.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185] Length = 163 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL + E R I K I AR GDL EN Y AAKE Q E R+ +L Sbjct: 11 LTQDAYDRLSAELEHLKGEGRSDIAKRIEAAREEGDLKENGGYHAAKEEQGKMEARIRQL 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSP 125 E+++ A V + + G V++ + GD + + + + A D + S SP Sbjct: 71 ESLLRDAVVGEAPK-DNGIVDSGMVVTV--EMFGDTETFLLGSREIAGDADIDVYSEQSP 127 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154 + A++GK++G+ S +AP G+ +I+ Sbjct: 128 LGEAIMGKKVGEETSYDAPNGKTIEVKIVD 157 >gi|188584758|ref|YP_001916303.1| transcription elongation factor GreA [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349445|gb|ACB83715.1| transcription elongation factor GreA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 164 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 86/153 (56%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T G++++++EL + R + + I A ++GD+SEN+EY AK Q EGR Sbjct: 11 KEVVLTRGGYEELEEELEHLKTVRRKEVAERIKTAISFGDISENSEYDDAKNEQAFIEGR 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE ++ A+++D ++ G TV L + ++ Y IVG E++ +S Sbjct: 71 IITLEKMLRNAKIVDKDETDNKVVSIGNTVVLKDLEYDEEVEYTIVGSAESNPTDQKISN 130 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ A+IGK++G+++ V P G YEI+ + Sbjct: 131 ESPVGEAIIGKKVGEVVEVKVPAGVIEYEIVDI 163 >gi|54020301|ref|YP_116197.1| transcription elongation factor [Mycoplasma hyopneumoniae 232] gi|81378424|sp|Q5ZZL8|GREA_MYCH2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|53987474|gb|AAV27675.1| transcription elongation factor [Mycoplasma hyopneumoniae 232] gi|312601624|gb|ADQ90879.1| Transcription elongation factor greA [Mycoplasma hyopneumoniae 168] Length = 160 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+AL+G+ GD + V+ + + IL+V+ Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158 >gi|240047822|ref|YP_002961210.1| transcription elongation factor GreA [Mycoplasma conjunctivae HRC/581] gi|239985394|emb|CAT05407.1| Transcription elongation factor [Mycoplasma conjunctivae] Length = 161 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 3/155 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I +T + ++++QEL ER +I+ I AR GDLSENAEY AA+E Q + E R Sbjct: 7 NQILLTKEKLEELKQELNNLINIERNNVIEEIKYARQQGDLSENAEYDAAREKQGVIESR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS 121 + EL+ IIT+A++I +T S I+ G+ V++ + +QIVG +AD +S Sbjct: 67 IRELDAIITKAQIIRTNTGS-SSISVGSKVTIENLKNNKINTFQIVGSSIDADPFQNKIS 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ISS A+A++G+ GD + V+ + + IL+V Sbjct: 126 ISSAFAQAIMGQHEGDELDVDTIE-KYSVRILKVE 159 >gi|197303207|ref|ZP_03168249.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC 29176] gi|197297747|gb|EDY32305.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC 29176] Length = 167 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +KI+ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ Sbjct: 2 RERLTKSDVEKIKAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI Sbjct: 62 RYLERMLKTAEIVEDHS-KADEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SPI +AL+G + GD + + Y ++ Sbjct: 121 SPIGKALLGHKEGDRVYIKVNDDFGYYVVI 150 >gi|293381483|ref|ZP_06627478.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus crispatus 214-1] gi|290921953|gb|EFD98960.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Lactobacillus crispatus 214-1] Length = 147 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 + +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + R+ L Sbjct: 1 MIPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 59 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ Sbjct: 60 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 117 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A++ KE G +V AP GE I++V Sbjct: 118 GQAIMKKEAGTTATVAAPVGEYQVTIVEVK 147 >gi|294056141|ref|YP_003549799.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis DSM 45221] gi|293615474|gb|ADE55629.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis DSM 45221] Length = 619 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 1/153 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 V+ FD + E ++ P +AI AR +GDL EN+EY+ A++ Q++ R EL Sbjct: 464 VSQASFDAAKAEYEDLIAKKIPENKEAIVIAREHGDLKENSEYKMARQDQDILLARKNEL 523 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++RA V D S + D + G+ V L E ++G + Y I+G ++D ++ ++S +P+ Sbjct: 524 EVDLSRARVTDFSEATKDNVGIGSVVELKEGSTGKVRRYSILGAWDSDPENDILSYKTPL 583 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL-WI 158 A+ L+GK GD ++ G E+T+ IL + +I Sbjct: 584 AQQLLGKSGGDSVTTKIGGSEETWTILSIERYI 616 >gi|291520769|emb|CBK79062.1| transcription elongation factor GreA [Coprococcus catus GD/7] Length = 167 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ K+++E+ R+ R + A+ EAR GDLSEN EYQAAK +N NE R+ L Sbjct: 5 LSEADIQKMKEEIEHRKVVVRKEALAAVKEAREQGDLSENFEYQAAKREKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A+VI + D + TV++ ++ +++ Y+IV DV GL+SI SP+ Sbjct: 65 ERMVKTAKVIKDHSKD-DEVGLNNTVTVYFEDEDEEETYRIVTTVREDVLHGLISIDSPV 123 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQV 155 +AL+G +GD + V EI ++ Sbjct: 124 GKALLGHRVGDTVHVQVNDKYGYDVEIRKI 153 >gi|213163103|ref|ZP_03348813.1| transcription elongation factor GreB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 125 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93 ++ A + GD SENA+YQ K+ + R+ L + +++D S ++ FGA V Sbjct: 1 MTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVE 60 Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 + + GD ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE + + Sbjct: 61 IEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVN 119 Query: 154 QVLWI 158 + ++ Sbjct: 120 AIEYV 124 >gi|325474603|gb|EGC77789.1| transcription elongation factor [Treponema denticola F0402] Length = 901 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 82/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+ Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L + G+ + +++Y+I+ + Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDIS 896 >gi|42528195|ref|NP_973293.1| transcript cleavage factor/unknown domain fusion protein [Treponema denticola ATCC 35405] gi|41819465|gb|AAS13212.1| transcription elongation protein, GreA/GreB family [Treponema denticola ATCC 35405] Length = 901 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 82/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+ Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L + G+ + +++Y+I+ + Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDIS 896 >gi|72080995|ref|YP_288053.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae 7448] gi|123761607|sp|Q4A759|GREA_MYCH7 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71914119|gb|AAZ54030.1| transcription elongation factor [Mycoplasma hyopneumoniae 7448] Length = 160 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+AL+G+ GD + V+ + + IL+V+ Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158 >gi|323486296|ref|ZP_08091622.1| transcription elongation factor [Clostridium symbiosum WAL-14163] gi|323400406|gb|EGA92778.1| transcription elongation factor [Clostridium symbiosum WAL-14163] Length = 178 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE Sbjct: 10 MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 69 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LEN+I A V+ + S D + TV+L ++ +++ Y++V + GL+ Sbjct: 70 SRIRYLENMIKNARVVSDKSGS-DEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 128 Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156 SI SP+ +A+ G + GD + V + I ++ Sbjct: 129 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 165 >gi|225164446|ref|ZP_03726704.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] gi|224800944|gb|EEG19282.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] Length = 617 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 82/153 (53%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +++ V+ + +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + + Sbjct: 458 EQLLVSRESYERKREEYETIVSKKIPENSKAIATAREHGDLKENSEYKMAKQDQQVLMAQ 517 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A +E ++RA + D D I G V L ++G Y ++G ++ + +++ Sbjct: 518 KALIEKELSRARITDFKDAPTDSIGVGNIVGLKIGSTGKTATYTLLGAWDSIPEKNIIAY 577 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +P+ + L+ K +GD + V E+TY + + Sbjct: 578 KTPLGQGLLTKRVGDTVQVKIGSAEETYTVTSI 610 >gi|238917160|ref|YP_002930677.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] gi|238872520|gb|ACR72230.1| transcription elongation factor GreA [Eubacterium eligens ATCC 27750] Length = 166 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R E R + + E RA GDLSEN EY AAK +N NE R+ L Sbjct: 5 LTKNDIKKMEEEIEYRIHEVRKAALDDVKETRAQGDLSENFEYHAAKRFKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I A VID S+ D + TV ++ ++ + +IV AD SG++SI SP+ Sbjct: 65 QRTIKNATVIDDSSAD-DEVGVNNTVEVLYEDDESTETIKIVTTIRADSLSGMISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +AL+G + GD + V + Y +++ Sbjct: 124 GKALLGHKKGDRVLVQVNPQVEYYVVIK 151 >gi|153814499|ref|ZP_01967167.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756] gi|317500540|ref|ZP_07958762.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] gi|145847993|gb|EDK24911.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756] gi|316898050|gb|EFV20099.1| transcription elongation factor [Lachnospiraceae bacterium 8_1_57FAA] Length = 167 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ Sbjct: 2 REKLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ A +++ D I TV + ++ + + Y+IV +GLVSI Sbjct: 62 RYLERMLKTAVIVE-DESKEDEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIE 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SP+ +AL+G + GD + + Y I++ Sbjct: 121 SPLGKALLGHKEGDRVFIKVNDDFGYYVIVK 151 >gi|315223125|ref|ZP_07864993.1| transcription elongation factor GreA [Streptococcus anginosus F0211] gi|315187814|gb|EFU21561.1| transcription elongation factor GreA [Streptococcus anginosus F0211] Length = 160 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SPI +ALIGK+ GD +V P G +IL+V Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157 >gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus ATCC 19977] gi|238688921|sp|B1MKJ7|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium abscessus] Length = 164 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINERREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + GD + + I QE D + + S S Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGKLEVYSPS 126 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ ALI ++G+ S P G + Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGTE 151 >gi|302387987|ref|YP_003823809.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] gi|302198615|gb|ADL06186.1| GreA/GreB family elongation factor [Clostridium saccharolyticum WM1] Length = 167 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK +T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 1 MFDK--LTENDIKKMQEEIDYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNQNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE +I A++I + D I TV L ++ +++ Y++V + GL+ Sbjct: 59 SRIRYLEKMIKTAQIISDESKD-DEIGLYNTVDLYFEDEDEEETYKLVTTVRGNSMKGLI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + SP+ +A++G +GD + V Y +++ Sbjct: 118 TSESPLGKAIMGHRVGDRVYVRVNEKTGYYVVVK 151 >gi|266619156|ref|ZP_06112091.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] gi|288869302|gb|EFD01601.1| transcription elongation factor GreA [Clostridium hathewayi DSM 13479] Length = 186 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 3/154 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK +T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 20 MYDK--LTKNDIQKMQEEIDYRKLVVRREALEAVKEARAHGDLSENFEYHAAKKDKNQNE 77 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE +I A+++ + D I TV L ++ + + Y++V + GL+ Sbjct: 78 SRIRYLERMIKTAQIVSDESRE-DEIGLYNTVDLYFEDDDEVETYKLVTTVRGNSMKGLI 136 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S SP+ A++G +GD + V Y +++ Sbjct: 137 SSESPLGSAIMGHRVGDRVYVRINEKAGYYVVVK 170 >gi|307324420|ref|ZP_07603628.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu 4113] gi|306890151|gb|EFN21129.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu 4113] Length = 165 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ +A+V + + +A G V++ + + D + + + A S S Sbjct: 70 LTQLLQQAKVGE-APADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASANIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ + GK++G P G + IL+ Sbjct: 129 PLGSGVNGKKVGQDAEYELPNGRTASVRILE 159 >gi|71894015|ref|YP_279461.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae J] gi|123775457|sp|Q4A921|GREA_MYCHJ RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|71852142|gb|AAZ44750.1| transcription elongation factor [Mycoplasma hyopneumoniae J] Length = 160 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SPIA+AL+G+ GD + V+ + + IL+V+ Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158 >gi|328955979|ref|YP_004373312.1| transcription elongation factor GreA [Coriobacterium glomerans PW2] gi|328456303|gb|AEB07497.1| transcription elongation factor GreA [Coriobacterium glomerans PW2] Length = 157 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++I +T +G K+ EL WR+ I++ I AR +GDLSEN+EY AK+ Q N Sbjct: 3 ANEIVLTPEGRQKLVDELDWRETTLSKEIVERIKIARDFGDLSENSEYDDAKDEQAKNAA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ E++ I+ A+ + + S ++ G++VSLV+ + G + +VG E + +S Sbjct: 63 RIVEIQAILANAQEVKATGHSL-TVSIGSSVSLVDAD-GVATDVSLVGTTETNSLEHKIS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SP+ A+IG+ G+ + V P G + Y I +V Sbjct: 121 NESPVGHAIIGRAEGETVEVTMPSGTVRAYTITKVS 156 >gi|332671448|ref|YP_004454456.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484] gi|332340486|gb|AEE47069.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484] Length = 161 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ EL + E R I I+ AR GDL EN Y AA+E Q E R+ E Sbjct: 9 WLTQEAYDRLTAELDRLKGEGRAEITARIAAARDEGDLKENGGYHAAREEQAKQEARIRE 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISS 124 LE + ++ + G V+ V +GD+ + + + A + + S +S Sbjct: 69 LEAKLRNVQIGTPP--DDGVVEPGMVVTAV--VAGDEMVFLLGSREIAGTAEIDVFSPTS 124 Query: 125 PIARALIGKELGDIISVNAPGGEK 148 P+ A+ G ++GD S AP G++ Sbjct: 125 PLGAAINGTKVGDTTSYTAPNGKE 148 >gi|291087950|ref|ZP_06347975.2| transcription elongation factor GreA [Clostridium sp. M62/1] gi|291073509|gb|EFE10873.1| transcription elongation factor GreA [Clostridium sp. M62/1] gi|295092686|emb|CBK78793.1| transcription elongation factor GreA [Clostridium cf. saccharolyticum K10] Length = 172 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T KIQ+E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 7 REQLTQSDIRKIQEEIDYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRI 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LEN+I A V+ + S D + T++L ++ ++ Y++V + +SI Sbjct: 67 RYLENMIKNARVVSDKSRS-DEVGLNDTITLYFEDDDEEDVYRLVTSIRGNSLENKISIE 125 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP+ +A+ G ++GD + V E+ ++ Sbjct: 126 SPLGKAVRGHKVGDRVYVEVNDRAGYYVEVRKIE 159 >gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium Broad-1] gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium Broad-1] Length = 169 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I ++ FDK+ EL + + R I+ IS AR GDL EN Y AA+E Q EG++ Sbjct: 12 IWLSKGAFDKLTAELEYLKGPRRQEILAEISSARDEGDLKENGGYHAAREEQGKLEGQIQ 71 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SI 122 +LE ++ +A+ + T + + + I + D G+ S Sbjct: 72 QLEALLRKADTTVPEDDDVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEISSA 131 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +SPI ALIG +GD ++ P G EIL+ Sbjct: 132 ASPIGAALIGARVGDTVTYEGPRGPLKVEILK 163 >gi|269957418|ref|YP_003327207.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM 15894] gi|269306099|gb|ACZ31649.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM 15894] Length = 160 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL R I + I+ AR GDL EN Y AA+E Q NE R+ E Sbjct: 8 WLTQEAHDRLKAELENLSGPARTEIAERIAAARDEGDLKENGGYHAAREEQAKNEARIRE 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISS 124 L + +V + V L G+ + + + A + S +S Sbjct: 68 LTEKLRTVQVGTPPDDGMVEVGMLVDVRLA----GEPMTFLLGSREIAGTTDVDVYSPTS 123 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEI 152 P+ A+ G +GD +S AP G++ T EI Sbjct: 124 PLGAAIDGHSIGDTVSYTAPNGKEFTVEI 152 >gi|225573152|ref|ZP_03781907.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM 10507] gi|225039481|gb|EEG49727.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +KI++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDVEKIKEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ +E++ + D + TV L + + + +++V + GL+S SP+ Sbjct: 65 ERMLKTSEIVSDESKD-DEVGLFNTVELYFEEDDETEKFKVVTSVRGNSLKGLISTESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++GK+ GD + + Y +++ Sbjct: 124 GKAIMGKKTGDRVEIKVSDSYSYYVVIK 151 >gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Rv] gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis CDC1551] gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis AF2122/97] gi|121637009|ref|YP_977232.1| transcription elongation factor GreA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660865|ref|YP_001282388.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|148822289|ref|YP_001287043.1| transcription elongation factor GreA [Mycobacterium tuberculosis F11] gi|167967359|ref|ZP_02549636.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|215402903|ref|ZP_03415084.1| transcription elongation factor GreA [Mycobacterium tuberculosis 02_1987] gi|215410693|ref|ZP_03419501.1| transcription elongation factor GreA [Mycobacterium tuberculosis 94_M4241A] gi|215426369|ref|ZP_03424288.1| transcription elongation factor GreA [Mycobacterium tuberculosis T92] gi|215429946|ref|ZP_03427865.1| transcription elongation factor GreA [Mycobacterium tuberculosis EAS054] gi|215445235|ref|ZP_03431987.1| transcription elongation factor GreA [Mycobacterium tuberculosis T85] gi|218752760|ref|ZP_03531556.1| transcription elongation factor GreA [Mycobacterium tuberculosis GM 1503] gi|219556957|ref|ZP_03536033.1| transcription elongation factor GreA [Mycobacterium tuberculosis T17] gi|224989482|ref|YP_002644169.1| putative transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253799884|ref|YP_003032885.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 1435] gi|254363991|ref|ZP_04980037.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis str. Haarlem] gi|254550071|ref|ZP_05140518.1| transcription elongation factor GreA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186001|ref|ZP_05763475.1| transcription elongation factor GreA [Mycobacterium tuberculosis CPHL_A] gi|260200115|ref|ZP_05767606.1| transcription elongation factor GreA [Mycobacterium tuberculosis T46] gi|260204309|ref|ZP_05771800.1| transcription elongation factor GreA [Mycobacterium tuberculosis K85] gi|289442507|ref|ZP_06432251.1| transcription elongation factor greA [Mycobacterium tuberculosis T46] gi|289446666|ref|ZP_06436410.1| transcription elongation factor greA [Mycobacterium tuberculosis CPHL_A] gi|289555137|ref|ZP_06444347.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 605] gi|289569068|ref|ZP_06449295.1| transcription elongation factor greA [Mycobacterium tuberculosis T17] gi|289573723|ref|ZP_06453950.1| transcription elongation factor greA [Mycobacterium tuberculosis K85] gi|289744820|ref|ZP_06504198.1| transcription elongation factor greA [Mycobacterium tuberculosis 02_1987] gi|289749613|ref|ZP_06508991.1| transcription elongation factor greA [Mycobacterium tuberculosis T92] gi|289753143|ref|ZP_06512521.1| transcription elongation factor greA [Mycobacterium tuberculosis EAS054] gi|289757165|ref|ZP_06516543.1| transcription elongation factor greA [Mycobacterium tuberculosis T85] gi|289761218|ref|ZP_06520596.1| transcription elongation factor greA (transcript cleavage factor greA) [Mycobacterium tuberculosis GM 1503] gi|294993263|ref|ZP_06798954.1| transcription elongation factor GreA [Mycobacterium tuberculosis 210] gi|297633615|ref|ZP_06951395.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN 4207] gi|297730600|ref|ZP_06959718.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN R506] gi|298524578|ref|ZP_07011987.1| transcription elongation factor greA [Mycobacterium tuberculosis 94_M4241A] gi|306775228|ref|ZP_07413565.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu001] gi|306781857|ref|ZP_07420194.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu002] gi|306783784|ref|ZP_07422106.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu003] gi|306788143|ref|ZP_07426465.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu004] gi|306792476|ref|ZP_07430778.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu005] gi|306796872|ref|ZP_07435174.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu006] gi|306802759|ref|ZP_07439427.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu008] gi|306806942|ref|ZP_07443610.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu007] gi|306967143|ref|ZP_07479804.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu009] gi|306971331|ref|ZP_07483992.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu010] gi|307079059|ref|ZP_07488229.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu011] gi|307083622|ref|ZP_07492735.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu012] gi|313657927|ref|ZP_07814807.1| transcription elongation factor GreA [Mycobacterium tuberculosis KZN V2475] gi|54037218|sp|P64280|GREA_MYCBO RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|54041328|sp|P64279|GREA_MYCTU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200676|sp|A1KHL8|GREA_MYCBP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|166200679|sp|A5U1C6|GREA_MYCTA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799563|sp|C1AM72|GREA_MYCBT RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2896717|emb|CAA17196.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage factor greA) [Mycobacterium tuberculosis H37Rv] gi|13880692|gb|AAK45367.1| transcription elongation factor GreA [Mycobacterium tuberculosis CDC1551] gi|31617859|emb|CAD93969.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage factor greA) [Mycobacterium bovis AF2122/97] gi|121492656|emb|CAL71125.1| Probable transcription elongation factor greA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149505|gb|EBA41550.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis str. Haarlem] gi|148505017|gb|ABQ72826.1| transcription elongation factor GreA [Mycobacterium tuberculosis H37Ra] gi|148720816|gb|ABR05441.1| transcription elongation factor greA [Mycobacterium tuberculosis F11] gi|224772595|dbj|BAH25401.1| putative transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253321387|gb|ACT25990.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 1435] gi|289415426|gb|EFD12666.1| transcription elongation factor greA [Mycobacterium tuberculosis T46] gi|289419624|gb|EFD16825.1| transcription elongation factor greA [Mycobacterium tuberculosis CPHL_A] gi|289439769|gb|EFD22262.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 605] gi|289538154|gb|EFD42732.1| transcription elongation factor greA [Mycobacterium tuberculosis K85] gi|289542822|gb|EFD46470.1| transcription elongation factor greA [Mycobacterium tuberculosis T17] gi|289685348|gb|EFD52836.1| transcription elongation factor greA [Mycobacterium tuberculosis 02_1987] gi|289690200|gb|EFD57629.1| transcription elongation factor greA [Mycobacterium tuberculosis T92] gi|289693730|gb|EFD61159.1| transcription elongation factor greA [Mycobacterium tuberculosis EAS054] gi|289708724|gb|EFD72740.1| transcription elongation factor greA (transcript cleavage factor greA) [Mycobacterium tuberculosis GM 1503] gi|289712729|gb|EFD76741.1| transcription elongation factor greA [Mycobacterium tuberculosis T85] gi|298494372|gb|EFI29666.1| transcription elongation factor greA [Mycobacterium tuberculosis 94_M4241A] gi|308216254|gb|EFO75653.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu001] gi|308325405|gb|EFP14256.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu002] gi|308331446|gb|EFP20297.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu003] gi|308335256|gb|EFP24107.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu004] gi|308339062|gb|EFP27913.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu005] gi|308342739|gb|EFP31590.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu006] gi|308346614|gb|EFP35465.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu007] gi|308350538|gb|EFP39389.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu008] gi|308355188|gb|EFP44039.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu009] gi|308359143|gb|EFP47994.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu010] gi|308363058|gb|EFP51909.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu011] gi|308366711|gb|EFP55562.1| transcription elongation factor greA [Mycobacterium tuberculosis SUMu012] gi|323720471|gb|EGB29557.1| transcription elongation factor greA [Mycobacterium tuberculosis CDC1551A] gi|326904695|gb|EGE51628.1| transcription elongation factor greA [Mycobacterium tuberculosis W-148] gi|328459629|gb|AEB05052.1| transcription elongation factor greA [Mycobacterium tuberculosis KZN 4207] Length = 164 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123 L+++++ A+V + SG + + D + + I QE +D + + S + Sbjct: 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ S P G Sbjct: 127 SPLGGALIDAKVGETRSYTVPNG 149 >gi|283783053|ref|YP_003373807.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Gardnerella vaginalis 409-05] gi|298253524|ref|ZP_06977314.1| YhbC family protein [Gardnerella vaginalis 5-1] gi|283441369|gb|ADB13835.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Gardnerella vaginalis 409-05] gi|297532291|gb|EFH71179.1| YhbC family protein [Gardnerella vaginalis 5-1] Length = 159 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q Sbjct: 1 MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117 NEGR+ EL + A++++ + G+ V+L + +G + Y + A Sbjct: 61 NEGRINELIVKLRNAKILEAPK--DGTVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 ++S SPI A++G GD +S AP G E + I Sbjct: 117 DVISPESPIGAAIMGAHAGDTVSYAAPNGREISVTI 152 >gi|291298253|ref|YP_003509531.1| transcription elongation factor GreA [Stackebrandtia nassauensis DSM 44728] gi|290567473|gb|ADD40438.1| transcription elongation factor GreA [Stackebrandtia nassauensis DSM 44728] Length = 167 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + +D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+ Sbjct: 12 WLSQEAYDRLKAELDEHIA-NRPAMAAEINARREEGDLRENGGYHAAKDEQGKIESRIRY 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 LE+ + +A+V + + + + G+ V++ + + ++G +E + L S Sbjct: 71 LEDFLRKAQVGE-APVDVKGVTPGSVVTIAFDDDPEDTETFLLGSREISATTDLTVYSPE 129 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S + A++G GD ++ AP G E ++L++ Sbjct: 130 SALGAAILGHAEGDTVTYTAPSGAELKVKVLKLE 163 >gi|308235569|ref|ZP_07666306.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14018] gi|311114342|ref|YP_003985563.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14019] gi|310945836|gb|ADP38540.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC 14019] Length = 159 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q Sbjct: 1 MAEEKTILLTKEAYDKLKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQGK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117 NEGR+ EL + A++++ + G+ V+L + +G + Y + A Sbjct: 61 NEGRINELIVKLRNAKILEAPE--AGSVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 ++S SPI A++G + GD +S +AP G E + I Sbjct: 117 DVISPESPIGAAIMGAKAGDTVSYSAPNGREISVTI 152 >gi|302542896|ref|ZP_07295238.1| transcription elongation factor GreA [Streptomyces hygroscopicus ATCC 53653] gi|302460514|gb|EFL23607.1| transcription elongation factor GreA [Streptomyces himastatinicus ATCC 53653] Length = 165 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYDQLKAELEYLSGPARIEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + + +A G V++ + + D + + + A S S Sbjct: 70 LTQLLEHAKVGE-APADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASADVETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ + GK++G P G + IL Sbjct: 129 PLGTGVNGKKVGQDAEYELPNGRTASVRILD 159 >gi|324538258|gb|ADY49528.1| Transcription elongation factor greA [Ascaris suum] Length = 148 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 98/148 (66%), Gaps = 3/148 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + I +T + +++++E ++ +RP +++ I EA+++GDLSEN+EY +A+E Q+ E Sbjct: 1 MNNDIFLTKEQLEELKEEYQYYVHTKRPEVVERIKEAKSFGDLSENSEYDSAREEQSFVE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSG 118 ++ EL+ II+ A++I + + D + G+TV+ + S +K+ Y I VG D ++ Sbjct: 61 AKIKELDAIISNAQII-GAVTNSDTVVLGSTVTYEDTTSKEKQTYTILGVGANPLDQKNP 119 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146 +S ++P+ARAL+G ++GDI+++ AP G Sbjct: 120 SISTNTPVARALLGCKVGDIVTIEAPMG 147 >gi|325265032|ref|ZP_08131759.1| transcription elongation factor GreA [Clostridium sp. D5] gi|324029722|gb|EGB91010.1| transcription elongation factor GreA [Clostridium sp. D5] Length = 167 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 3/143 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M DK +T +KI++E+ R+ R I+A+ EARA+GDLSEN EY AAK+ +N NE Sbjct: 1 MYDK--LTKSDIEKIREEIEHRKLVVRREAIEAVKEARAHGDLSENFEYHAAKKDKNKNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ A ++D ++ D + TV L + + + Y++V +GL+ Sbjct: 59 SRIRYLERMLKTAVIVDDTSQE-DEVGINNTVELYFEEDDEVETYRLVTSVRGSSINGLI 117 Query: 121 SISSPIARALIGKELGDIISVNA 143 SI SPI +A++G+++ D + V Sbjct: 118 SIESPIGKAILGRKVNDRVFVKV 140 >gi|184201417|ref|YP_001855624.1| transcription elongation factor GreA [Kocuria rhizophila DC2201] gi|183581647|dbj|BAG30118.1| transcription elongation factor GreA [Kocuria rhizophila DC2201] Length = 165 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 9/155 (5%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++++EL + R I+ I +AR+ GDL EN Y AA+E Q NEGR+ + Sbjct: 8 WLTQEAYDRLKKELDYIAGPYRQEIVDRIEQARSEGDLKENGGYHAAREEQGKNEGRIVQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LV 120 L ++ A+V + G A + + + +GD+ + + + A+ +G + Sbjct: 68 LTQLLENAQVGEAPADDG---VIEAGMVVTAEIAGDEMTFLMGSREVAEDLTGGEDLEVF 124 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S SP+ A+ G ++G+ +S AP G + T +IL+ Sbjct: 125 SERSPMGAAINGHKVGETVSYQAPNGKDITVKILK 159 >gi|160892694|ref|ZP_02073484.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50] gi|156865735|gb|EDO59166.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50] Length = 195 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 35 LTESDIKKMEEEIEYRKVVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANEKRIRYL 94 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ AE+I + D + TV + + ++ Y+IV DV +G++S SP+ Sbjct: 95 DRMVRTAEIIKDESAD-DEVGLNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNISPM 153 Query: 127 ARALIGKELGDIISVNAPGGE 147 +AL+G ++GD + V G+ Sbjct: 154 GKALLGHKVGDRVEVVPGKGD 174 >gi|163841781|ref|YP_001626186.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] gi|162955257|gb|ABY24772.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] Length = 163 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 5/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + F+++Q EL R ++K I +AR+ GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAFNRLQGELEQLSGPGRAEVVKKIEQARSEGDLKENGGYHAAKEEQGKIEARIRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 L ++ A V + S + G +V K + +K + + + A D + S S Sbjct: 70 LTELLRDAHVGE-SPEDNGVVEPGML--VVAKIANEKTTFLLGSREVAGDTDLDVFSEKS 126 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ A+ G + GD IS AP G + E++ Sbjct: 127 PLGAAIQGHKAGDKISYTAPNGKDIKVEVIS 157 >gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC 12478] Length = 164 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+++++ A+V + T SG + + D + + I QE D + + S + Sbjct: 67 LQDLLSNAKVGEAPTQSGVALPGSVVKVYYNGDESDTETFLIATRQEGVNDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ ALI ++G+ S P G T E+ Sbjct: 127 SPLGGALIDAKVGETRSYKVPNGN-TVEV 154 >gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp. avium ATCC 25291] gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10] gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium] Length = 164 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE D + + S + Sbjct: 67 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ ALI ++G+ S P G T E+ Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGS-TVEV 154 >gi|229819572|ref|YP_002881098.1| transcription elongation factor GreA [Beutenbergia cavernae DSM 12333] gi|229565485|gb|ACQ79336.1| transcription elongation factor GreA [Beutenbergia cavernae DSM 12333] Length = 160 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T FD+++ E R I I AR GDL EN Y AA+E Q E R+ + Sbjct: 7 WLTQDAFDRLKAEHDHLTGVGRVEIADKIEAAREEGDLKENGGYHAAREEQAKQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124 LE I+ A+V + G + G V+ +GD+ + + + A D + S SS Sbjct: 67 LEEILRTAQVGEAPADDG-VVEPGMVVTAK--VAGDEMRFLLGSREVAGDTDLDVYSPSS 123 Query: 125 PIARALIGKELGDIISVNAPGGE 147 P+ A++GK++G+ P G+ Sbjct: 124 PLGAAIMGKKVGEKAEYRTPSGK 146 >gi|323693914|ref|ZP_08108101.1| transcription elongation factor [Clostridium symbiosum WAL-14673] gi|323502011|gb|EGB17886.1| transcription elongation factor [Clostridium symbiosum WAL-14673] Length = 169 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M + +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE Sbjct: 1 MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LEN+I A V+ + S D + TV+L ++ +++ Y++V + GL+ Sbjct: 61 SRIRYLENMIKNARVVSDKSGS-DEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 119 Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156 SI SP+ +A+ G + GD + V + I ++ Sbjct: 120 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 156 >gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] Length = 163 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+++ EL RP I I+ R GDL EN Y AA+E Q E R+ + Sbjct: 10 WLTQEAFDRLKNELDQLIA-NRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQ 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A+V + S D + G +++ + ++ ++ + ++S +SP Sbjct: 69 LQELLRTAQVG-TAPTSTDVASPGTVLTVRYDDDDTEQVLLGSREEGSHGDLQVISPNSP 127 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVL 156 + AL+G ++G+ + P GG ++ V Sbjct: 128 LGAALLGAKVGETREYSLPDGGTMKVTLVAVE 159 >gi|182436357|ref|YP_001824076.1| transcription elongation factor GreA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776981|ref|ZP_08236246.1| transcription elongation factor GreA [Streptomyces cf. griseus XylebKG-1] gi|178464873|dbj|BAG19393.1| putative transcription elongation factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657314|gb|EGE42160.1| transcription elongation factor GreA [Streptomyces cf. griseus XylebKG-1] Length = 165 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEHLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A + S S Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTLTFLLASREYASTEIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154 P+ + GK GD P G+ + +IL Sbjct: 129 PLGLGVNGKRTGDDADYELPNGKTASVKILA 159 >gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium kroppenstedtii DSM 44385] gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii DSM 44385] Length = 168 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++++EL + RP I I+E R GDL EN Y AA+E Q E R+A Sbjct: 9 WLTQEAYDRLKKELDDLKA-NRPVIAAEINERREEGDLKENGGYHAAREQQGQEEARIAY 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123 LE ++ A + + + SG + + + D + + I G ++ S Sbjct: 68 LEELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLETYSTD 127 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 +P+ A++G + G+ P G + I++ Sbjct: 128 APLGAAIVGAKEGETREYQTPNGSTVSVTIVK 159 >gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104] gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104] Length = 159 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 3 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 61 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE D + + S + Sbjct: 62 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 121 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ ALI ++G+ S P G T E+ Sbjct: 122 SPLGGALIDAKVGETRSYTVPNGS-TVEV 149 >gi|297243708|ref|ZP_06927639.1| YhbC family protein [Gardnerella vaginalis AMD] gi|296888459|gb|EFH27200.1| YhbC family protein [Gardnerella vaginalis AMD] Length = 159 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q Sbjct: 1 MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117 NEGR+ EL + A++++ + G+ V+L + +G + Y + A Sbjct: 61 NEGRINELIVKLRNAKILEAPK--DGTVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 ++S SPI A++G GD +S AP G E + I Sbjct: 117 DVISPESPIGAAIMGAHTGDTVSYAAPNGREISVTI 152 >gi|152002511|dbj|BAF73535.1| transcription elongation factor [Onion yellows phytoplasma OY-W] Length = 156 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%) Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +KI +T G K+++EL + ++ +R ++A+ E R GDLSENA+Y AA+ Q L Sbjct: 1 MNNKIYELTQSGIKKLKKELTFLKEVKRKENLEALKEEREQGDLSENADYDAARNEQTLI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD + Sbjct: 61 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFANK 118 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 +SI SP+ + + G ++GD++ V G +I+ Sbjct: 119 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVD 154 >gi|256372307|ref|YP_003110131.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008891|gb|ACU54458.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM 10331] Length = 160 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 1/154 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++ ++ +D + QEL + R I KAI ARA GDLSEN +Y AAK+ Q E Sbjct: 1 MSEVEISQATYDALVQELEELTTQGRIEIAKAIEAARALGDLSENGDYHAAKDAQGKMEA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +++ I+ A V+ + + D + G V L + D ++Y + +E +VS Sbjct: 61 RIRQIQQILQSARVV-SADLPTDEVRPGVVVGLRYEGEDDVEHYLVGSIEERHPGLEVVS 119 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SP+ AL+G +G + AP G +++++ Sbjct: 120 PTSPLGEALLGARVGAWVEYEAPRGTLKVQVVEI 153 >gi|224534276|ref|ZP_03674854.1| transcription elongation factor GreA [Borrelia spielmanii A14S] gi|224514378|gb|EEF84694.1| transcription elongation factor GreA [Borrelia spielmanii A14S] Length = 900 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G + Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEITGKDETYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD ++ Y + ++ Sbjct: 871 DSKEGDSLNFIINNTNFRYFVKKIE 895 >gi|325067374|ref|ZP_08126047.1| transcription elongation factor GreA [Actinomyces oris K20] gi|326772303|ref|ZP_08231588.1| transcription elongation factor GreA [Actinomyces viscosus C505] gi|326638436|gb|EGE39337.1| transcription elongation factor GreA [Actinomyces viscosus C505] Length = 161 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E Sbjct: 1 MSEQSQGTWLTQEAYDRLAAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116 LNE R+ +LE + A++ + + T + G ++ + + G + DV Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSVSAGTIVTAKVA----GKEQVFALGGQEITEDVP 116 Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 G + S +P+ +AL+G GD +S AP G K EI++V Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVSYEAPNGRKIQAEIVKVE 159 >gi|203287597|ref|YP_002222612.1| transcription elongation factor EF [Borrelia recurrentis A1] gi|201084817|gb|ACH94391.1| transcription elongation factor EF [Borrelia recurrentis A1] Length = 900 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD + Y + ++ Sbjct: 871 DSREGDSLDFVINNTHFQYYVKKIE 895 >gi|218290642|ref|ZP_03494733.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius LAA1] gi|218239307|gb|EED06505.1| transcription elongation factor GreA [Alicyclobacillus acidocaldarius LAA1] Length = 133 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+ Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120 Query: 120 VSISSPIARALIG 132 +S SP+ +AL+G Sbjct: 121 ISNESPVGKALLG 133 >gi|302672254|ref|YP_003832214.1| transcription elongation factor GreA/GreB2 [Butyrivibrio proteoclasticus B316] gi|302396727|gb|ADL35632.1| transcription elongation factor GreA/GreB2 [Butyrivibrio proteoclasticus B316] Length = 167 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K + ++ E+ R+ R +++ + EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTRKDIEDMEAEIEHRKVVVRKELLEHVKEARAQGDLSENFEYYAAKKAKNQNESRIRFL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+VID +T D++ +V++ + G ++ Y+IV + GL+S+ SP+ Sbjct: 65 ERMIKTAKVIDDNTTE-DQVGMNKSVTVRIEEDGSEETYKIVTTMRQNSLKGLISVESPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + L+G +GD +++ I ++ Sbjct: 124 GKQLLGHRVGDRVNIKVSDNYSYEITITKIE 154 >gi|187918011|ref|YP_001883574.1| transcript cleavage factor/unknown domain fusion protein [Borrelia hermsii DAH] gi|119860859|gb|AAX16654.1| transcription elongation factor GreA [Borrelia hermsii DAH] Length = 901 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMLEID 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+V+D + + FG V+++ K++G ++ Y I G E++ G++S SP L+ Sbjct: 812 VAKVVDTKELQSSVVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD + Y + ++ Sbjct: 872 DAKEGDNLDFVINDTRFQYYVKKIE 896 >gi|166032355|ref|ZP_02235184.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC 27755] gi|166028078|gb|EDR46835.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC 27755] Length = 166 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 88/147 (59%), Gaps = 3/147 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ + D I TV L ++ + + Y+IV + +GL+SI SP+ Sbjct: 65 ERMLKTANIVSDDS-KEDEIGINNTVDLYFEDDEEVETYRIVTSVRGNSLAGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153 +A++G ++GD + + P G+ Y ++ Sbjct: 124 GKAVLGHKVGDRVKI--PAGDDGYYVV 148 >gi|223936169|ref|ZP_03628082.1| GreA/GreB family elongation factor [bacterium Ellin514] gi|223895031|gb|EEF61479.1| GreA/GreB family elongation factor [bacterium Ellin514] Length = 170 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ EL Q E+R + A G+ S NA+ L + Sbjct: 30 KNYLTPDGAQRLRAELNRLQAEKRSQT--------ATGEFSGNAQ-----TEMQLVGQHI 76 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + AE++ +++ FGATV++ + SG++ Y+IVG E D+ VS Sbjct: 77 LQLEQSLATAEIVPPPPQPWEQVRFGATVTVRD-ESGNETRYRIVGVDETDIDRDWVSWL 135 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPIARALI +G+ + P GEK EI+ + + Sbjct: 136 SPIARALINARIGERVHFRFPAGEKQLEIVSITY 169 >gi|160946713|ref|ZP_02093916.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270] gi|158447097|gb|EDP24092.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270] Length = 160 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 +R I + I AR +GDLSEN+EY AK Q E ++ +L+N+I A++ID + Sbjct: 25 TVKRKEIAEKIKIARDFGDLSENSEYDEAKNEQAQIEEKIVKLDNMIANAKIIDEVELDT 84 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 + GATV+LV+ S K Y IVG E++ G +S SP+ +A++GK+ G+ + V Sbjct: 85 KTVNVGATVTLVQVESKKKLEYTIVGSAESNPLEGKISNESPVGKAILGKKKGNKVQVQL 144 Query: 144 PGG-EKTYEILQVL 156 P G Y+I + Sbjct: 145 PNGNVVEYKIQNIK 158 >gi|119952935|ref|YP_945144.1| transcript cleavage factor/unknown domain fusion protein [Borrelia turicatae 91E135] gi|119861706|gb|AAX17474.1| transcription elongation factor GreA [Borrelia turicatae 91E135] Length = 900 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMSEID 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 811 FAKVIDTKELQSSVVGFGTKVTMINKDTKREESYLIFGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD + Y + ++ Sbjct: 871 DAKEGDNLDFVINDTHFQYYVKKIE 895 >gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1] Length = 162 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQDAYDRLKSELDGLI-ENRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + S D A G ++L ++ D + ++G +E L +S + Sbjct: 67 LQELLRTAQVG-TAPSSADEAAPGTVLTLKYEDDDDTEKV-LLGSREEGSHGDLQVISPN 124 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156 SP+ AL+G + GD P GG +++V Sbjct: 125 SPLGAALLGAKPGDTREYQLPDGGSMKVSLVEVE 158 >gi|313906219|ref|ZP_07839565.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] gi|313468949|gb|EFR64305.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6] Length = 167 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+Q+E+ R ERP+I+KA+ EARA GDLSEN EY AA++ N R+ L Sbjct: 5 LTRSDIRKMQEEIDHRTLVERPKILKAVQEARAQGDLSENFEYYAARKANRENNSRINYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +I A +I + D++ V++ + + + Y+IV AD G ++ +SP+ Sbjct: 65 TKMIETA-IIVEDRSAEDQVGLNKKVTVKFPDEEETETYKIVTSVRADSMEGRITPNSPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 RAL+GK GD+ V E EI+QV Sbjct: 124 GRALMGKRAGDLAHVKVNDKLEYDVEIVQVE 154 >gi|239943845|ref|ZP_04695782.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL 15998] gi|239990301|ref|ZP_04710965.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL 11379] gi|291447308|ref|ZP_06586698.1| transcription elongation factor [Streptomyces roseosporus NRRL 15998] gi|291350255|gb|EFE77159.1| transcription elongation factor [Streptomyces roseosporus NRRL 15998] Length = 165 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L ++ A+V + G + G V++ + + D + + + A + S S Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLLASREYASTEIETYSPQS 128 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154 P+ + GK GD P G + +IL Sbjct: 129 PLGLGVNGKRTGDDADYELPNGRTASVKILA 159 >gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S] gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707] gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S] gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707] Length = 164 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E D + + S + Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+ ++G+ P G Sbjct: 127 SPLGGALLNAKVGETREYTLPNG 149 >gi|227871734|ref|ZP_03990142.1| possible transcription elongation factor [Oribacterium sinus F0268] gi|227842422|gb|EEJ52644.1| possible transcription elongation factor [Oribacterium sinus F0268] Length = 167 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 4/153 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T + KI+ E++ R+ E RP++I+A+ EARA GDLSEN EY AAK+ +N NE Sbjct: 1 MSEE--LTREDVRKIEAEIQKRKLEIRPKLIEAVKEARAQGDLSENFEYYAAKKEKNQNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ A+VI + G + TV + +++ Y++V G + Sbjct: 59 SRIRYLERVLKFAKVISTKSEEG-VVGINDTVVVYFPEDKEEECYRLVTSIRGQSLEGRI 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 S SP+ +AL+GK +G+ + V GG +Y +L Sbjct: 118 SNQSPLGKALMGKRVGEEVEVFLEGGS-SYTVL 149 >gi|26513900|gb|AAN78348.1| transcription elongation factor GreA [Listonella anguillarum] Length = 127 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 55/128 (42%), Positives = 93/128 (72%), Gaps = 2/128 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++EL + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRGEQFVREELDRLLK-LRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M + ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG + Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119 Query: 121 SISSPIAR 128 S+SSPIAR Sbjct: 120 SVSSPIAR 127 >gi|203284058|ref|YP_002221798.1| transcription elongation factor EF [Borrelia duttonii Ly] gi|201083501|gb|ACH93092.1| transcription elongation factor EF [Borrelia duttonii Ly] Length = 900 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+ Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD + Y + ++ Sbjct: 871 DSREGDSLDFVINDTHFQYYVKKIE 895 >gi|224532797|ref|ZP_03673413.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23] gi|224512285|gb|EEF82670.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23] Length = 901 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 75/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD ++ Y + ++ Sbjct: 872 DSKEGDSLNFVINNTNFKYFVKKIE 896 >gi|291458829|ref|ZP_06598219.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418083|gb|EFE91802.1| transcription elongation factor GreA [Oribacterium sp. oral taxon 078 str. F0262] Length = 167 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +I +E+ R+ RP++I+A+ EAR++GDLSEN EY AAK N NE R+A L Sbjct: 5 LTKADVKRIWEEIEKRKLSLRPKLIEAVKEARSHGDLSENFEYYAAKREMNQNESRIAYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ A ++ D + TV L+ + G++++Y+IV S L+S SP+ Sbjct: 65 ERMLRFATIV-SDRSERDEVGLNDTVRLLFEEEGEEESYRIVTSIRGHSLSNLISNKSPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152 +AL+ +GD ++V PGG K+Y + Sbjct: 124 GKALLKHRVGDRVTVR-PGGGKSYTV 148 >gi|294790721|ref|ZP_06755879.1| transcription elongation factor GreA [Scardovia inopinata F0304] gi|294458618|gb|EFG26971.1| transcription elongation factor GreA [Scardovia inopinata F0304] Length = 160 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 7/155 (4%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ + T + +DK+++EL +R+ E R I + I+ ARA GDLSEN YQAA+E Q NEG Sbjct: 4 DKVYMLTQEAYDKLREELTYREGELREEIKEKIAAARAEGDLSENGGYQAAREEQGKNEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120 R+ EL + ++++ + ++ G+ V L + +G + Y + A +V Sbjct: 64 RIQELTVKLRDSQILKAP--NPGKVGPGSLVVL--EIAGREMTYVLGSHDLAVATDYDIV 119 Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 S SPI A+ GK+ GD +S AP G T I + Sbjct: 120 SPESPIGAAINGKKTGDTVSYTAPNGRNITVTIKE 154 >gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99] gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M] gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99] gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M] Length = 164 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDHLIA-NRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE D + + S + Sbjct: 67 LQDLLNNAKVGEAPKQSGIALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+ ALI ++G+ S P G +++V I Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGS----VIEVTLI 157 >gi|75761030|ref|ZP_00741032.1| Transcription elongation factor greA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491486|gb|EAO54700.1| Transcription elongation factor greA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 151 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 69/119 (57%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S Sbjct: 84 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNE 142 >gi|319441736|ref|ZP_07990892.1| transcription elongation factor GreA [Corynebacterium variabile DSM 44702] Length = 173 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 5/152 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D +T + +D++ EL + RP + I+E R GDL EN Y AA+E Q Sbjct: 1 MADNQTTWLTQESYDRLNDELAALKG-NRPALAAEINERREEGDLKENGGYHAAREQQGQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116 E R+ LE ++ A + + SG + + + DK+ + I G + ++ Sbjct: 60 EEARIVYLEELLDNATIGEAPAESGVALVGSVVHVYYDGDEDDKETFLIGTRGLESSNPD 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK 148 S +P+ AL+G + G+ AP G K Sbjct: 120 LETYSTDAPLGAALVGAKEGETREYAAPNGSK 151 >gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare ATCC 13950] gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 164 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE D + + S + Sbjct: 67 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+ ALI ++G+ S P G T E+ Sbjct: 127 SPLGGALIDAKVGETRSYVVPNGN-TVEV 154 >gi|291550053|emb|CBL26315.1| transcription elongation factor GreA [Ruminococcus torques L2-14] Length = 167 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T +KIQ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ Sbjct: 2 RERLTKNDVEKIQAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI Sbjct: 62 RYLERMLKTAEIVEDHS-KEDEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SPI +AL+G + G+ + + Y ++ Sbjct: 121 SPIGKALLGHKEGERVYIKVNDDFGYYVVI 150 >gi|238924211|ref|YP_002937727.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|238875886|gb|ACR75593.1| transcription elongation factor GreA [Eubacterium rectale ATCC 33656] gi|291524937|emb|CBK90524.1| Transcription elongation factor [Eubacterium rectale DSM 17629] gi|291529078|emb|CBK94664.1| Transcription elongation factor [Eubacterium rectale M104/1] Length = 167 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ K++ E+ +R+ R + + + ARA GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTANDIKKMEDEIEYRKLVVRKKALDDVKVARAQGDLSENFEYKAAKQFKNQNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A VI + D + TV + ++ + + Y+IV + L+S SP+ Sbjct: 65 EKMIKTAVVISDESKD-DEVGMFNTVDVYFEDDDETETYKIVTTVRGNSLKNLISKESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTY--EILQVL 156 A+ G ++GD V + +Y +I+++ Sbjct: 124 GAAIFGHKVGDRCEVKV-NDDYSYFVKIMKIQ 154 >gi|227876654|ref|ZP_03994763.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243] gi|269976185|ref|ZP_06183181.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1] gi|306817605|ref|ZP_07451348.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC 35239] gi|307699804|ref|ZP_07636855.1| putative transcription elongation factor GreA [Mobiluncus mulieris FB024-16] gi|227842551|gb|EEJ52751.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243] gi|269935514|gb|EEZ92052.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1] gi|304649647|gb|EFM46929.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC 35239] gi|307614842|gb|EFN94060.1| putative transcription elongation factor GreA [Mobiluncus mulieris FB024-16] Length = 161 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K +T FD++Q EL R R I K I AR GDL EN Y AA++ Q NE R Sbjct: 6 KKKWMTQAAFDRLQSELDERSGSIRAEITKKIDLARREGDLKENGGYHAARDEQAHNETR 65 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLV 120 + EL+ I+ AEV + + I+ G +VE G +K ++G + AD + + Sbjct: 66 ILELQEILKHAEVGEAT--DDGTISPGC---VVEAKVGKRKIRFLLGSRVADEGMDIDVF 120 Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 S +P+ AL+G GD + AP G+K E+L V Sbjct: 121 SPDAPLGAALLGHREGDQVEYLAPTGKKIQVEVLSVS 157 >gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK] gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1] gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK] gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1] Length = 164 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTEEAYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + SG + + + D + + I ++ D + + S + Sbjct: 67 LQELLNDAKVGEAPKQSGIALPGSVVKVYYDDDENDTETFLIGTREQGVNDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ S P G Sbjct: 127 SPLGGALIDAKVGESRSYTVPSG 149 >gi|225549223|ref|ZP_03770196.1| transcription elongation factor GreA [Borrelia burgdorferi 94a] gi|225370081|gb|EEG99521.1| transcription elongation factor GreA [Borrelia burgdorferi 94a] Length = 901 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|195942372|ref|ZP_03087754.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|195941869|ref|ZP_03087251.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] gi|195942362|ref|ZP_03087744.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] gi|195942405|ref|ZP_03087787.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi 80a] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|15594477|ref|NP_212266.1| transcript cleavage factor/unknown domain fusion protein [Borrelia burgdorferi B31] gi|218249878|ref|YP_002374660.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi ZS7] gi|223889075|ref|ZP_03623664.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 64b] gi|7531126|sp|O51157|GREA_BORBU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|2688004|gb|AAC66506.1| transcription elongation factor (greA) [Borrelia burgdorferi B31] gi|218165066|gb|ACK75127.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi ZS7] gi|223885324|gb|EEF56425.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 64b] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|312149070|gb|ADQ29141.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi N40] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|226320676|ref|ZP_03796234.1| transcription elongation factor GreA [Borrelia burgdorferi 29805] gi|226233892|gb|EEH32615.1| transcription elongation factor GreA [Borrelia burgdorferi 29805] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|225549861|ref|ZP_03770823.1| transcription elongation factor GreA [Borrelia burgdorferi 118a] gi|225369552|gb|EEG99003.1| transcription elongation factor GreA [Borrelia burgdorferi 118a] gi|312148364|gb|ADQ31023.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi JD1] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|320538381|ref|ZP_08038256.1| prokaryotic transcription elongation factor, GreA/GreB protein [Treponema phagedenis F0421] gi|320144766|gb|EFW36507.1| prokaryotic transcription elongation factor, GreA/GreB protein [Treponema phagedenis F0421] Length = 893 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K + ++EL+ + P K I +A GDL ENAEY+AA+E Q + L Sbjct: 740 VTAKMLEAKKKELQEIIDIKIPENSKEIGKALELGDLRENAEYKAAREEQTRLNNMVTRL 799 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA+V D + + +++FG V L SG+ + Y I+G E++ + G++S SP+ Sbjct: 800 QEEIERAQVFDPTATTIGKVSFGTIVELKNHTSGENEVYTILGPWESNPEGGVISYMSPL 859 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L+ + G+ +S EK YEIL + Sbjct: 860 GTNLLNHKKGEKLSFTISEDEKIYEILNIS 889 >gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii PYR-1] gi|166200681|sp|A1TE43|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii PYR-1] Length = 164 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTEESYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123 L+ ++ A+V + SG + + + D + + I ++ +D + + S + Sbjct: 67 LQELLNNAKVGEAPKQSGIALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ S P G Sbjct: 127 SPLGGALIDAKVGESRSYTVPSG 149 >gi|216264351|ref|ZP_03436343.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 156a] gi|221217376|ref|ZP_03588847.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi 72a] gi|224533979|ref|ZP_03674563.1| transcription elongation factor GreA [Borrelia burgdorferi CA-11.2a] gi|215980824|gb|EEC21631.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia burgdorferi 156a] gi|221192654|gb|EEE18870.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia burgdorferi 72a] gi|224512815|gb|EEF83182.1| transcription elongation factor GreA [Borrelia burgdorferi CA-11.2a] Length = 901 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|15639013|ref|NP_218459.1| transcription elongation factor (greA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025253|ref|YP_001933025.1| transcription elongation factor GreA [Treponema pallidum subsp. pallidum SS14] gi|7387718|sp|O83063|GREA_TREPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|238689311|sp|B2S1W7|GREA_TREPS RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3322274|gb|AAC65015.1| transcription elongation factor (greA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017828|gb|ACD70446.1| transcription elongation factor GreA [Treponema pallidum subsp. pallidum SS14] Length = 162 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K + ++EL+ P + I A GDL ENAEY+AA+E Q + L Sbjct: 9 VTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAEYKAAREEQTRLNNMVTRL 68 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + I RA+V D +T+ R++FG +SL SG+ + Y I+G E+ + G++S SP+ Sbjct: 69 QEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L+ ++ G+ ++ EK YEIL + Sbjct: 129 GSNLLNRKTGEQLAFTVGEHEKVYEILSIS 158 >gi|239625679|ref|ZP_04668710.1| GreA/GreB family elongation factor [Clostridiales bacterium 1_7_47_FAA] gi|239519909|gb|EEQ59775.1| GreA/GreB family elongation factor [Clostridiales bacterium 1_7_47FAA] Length = 167 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTKSDIEKMQEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I + + + G TV + + + + Y++V + GL+SI SP+ Sbjct: 65 EKMIKTARIISDESKD-NEVGLGDTVEIYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155 +A+ ++GD + VN EI + Sbjct: 124 GKAIRRHKVGDRVHVNVDDRFGYDVEIRSI 153 >gi|291520255|emb|CBK75476.1| Transcription elongation factor [Butyrivibrio fibrisolvens 16/4] Length = 167 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T DKIQ E+ R+ RP++++ + E RA GDLSEN EY AK +N+N+ R+ L Sbjct: 5 LTQGDIDKIQAEIDERKLVLRPKLLEEVKETRAQGDLSENFEYHEAKRAKNMNDSRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AEV+D S+ + D + TV++ ++ Y++V + GL+SI SP+ Sbjct: 65 EKMLKFAEVVDDSS-AEDEVGINNTVTIYIPEDDCEETYKLVTSIRGNSLKGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155 A+ GK +GD V EI ++ Sbjct: 124 GAAIRGKHVGDKALVKVNDDYSYEVEIRKI 153 >gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4] gi|259647649|sp|C1A2Y4|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4] Length = 164 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E D + + S + Sbjct: 67 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+ ++GD N P G Sbjct: 127 SPLGGALLEAKVGDTREYNLPNG 149 >gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea NRRL 2338] gi|166200697|sp|A4F866|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] Length = 162 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T FD+++ EL RP I I+EAR GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQDAFDRLKSELDELVG-NRPVIAAKINEAREEGDLKENGGYHAAREEQGHLESRIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-VGDQEADVQSGLVSISS 124 L+ ++ A+V D+ T +G G+ +++ + + + + + ++ A + S SS Sbjct: 67 LQELLRTAKVGDVPTEAG-VAKPGSVLTVRYDDEDETEKFLLATREEGAHGDLEVYSPSS 125 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ +AL+ + G+ P G Sbjct: 126 PLGQALLDAKEGETREYELPNG 147 >gi|219685364|ref|ZP_03540183.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii Far04] gi|219673137|gb|EED30157.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii Far04] Length = 900 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD + Y + ++ Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895 >gi|219684768|ref|ZP_03539710.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii PBr] gi|219671713|gb|EED28768.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia garinii PBr] Length = 900 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD + Y + ++ Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895 >gi|256824590|ref|YP_003148550.1| transcription elongation factor [Kytococcus sedentarius DSM 20547] gi|256687983|gb|ACV05785.1| transcription elongation factor [Kytococcus sedentarius DSM 20547] Length = 164 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 4/156 (2%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + +T ++++ EL + E R I I +AR+ GDL EN Y AAKE Q EGR Sbjct: 7 ETTYLTRAAYERLNAELEQLKGEGRREIAHRIEDARSEGDLKENGGYHAAKEEQGKMEGR 66 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVS 121 +A+L ++ AEV + + G V++ + G+ + + + AD + S Sbjct: 67 IAQLTTLLQNAEVGEEPPADDGVVEPGMIVTI--EMFGETETFLFGNREIADGDDMEVYS 124 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 SP+ +A+ G+ G+ I AP G+K +I++V Sbjct: 125 ERSPLGKAIDGRNQGETIGYEAPNGKKIDVKIIEVR 160 >gi|51598396|ref|YP_072584.1| transcript cleavage factor/unknown domain fusion protein [Borrelia garinii PBi] gi|51572967|gb|AAU06992.1| transcription elongation factor [Borrelia garinii PBi] Length = 900 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD + Y + ++ Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895 >gi|224532243|ref|ZP_03672875.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia valaisiana VS116] gi|224511708|gb|EEF82114.1| transcription elongation factor GreA (Transcript cleavage factorgreA) [Borrelia valaisiana VS116] Length = 900 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 75/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 + GD ++ Y + ++ Sbjct: 871 DSKEGDSLNFVINNTNFRYFVKKIE 895 >gi|226321957|ref|ZP_03797482.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26] gi|226232547|gb|EEH31301.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26] Length = 901 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + + ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTDKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|297572051|ref|YP_003697825.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum DSM 20595] gi|296932398|gb|ADH93206.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum DSM 20595] Length = 159 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D ++ + FD++ EL + R I I EAR+ GDL EN Y AA+E Q+ E Sbjct: 1 MADTTWLSQETFDRLSAELEHLKTTGRTDIATKIEEARSEGDLRENGGYHAAREEQSKME 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGL 119 GR+ EL ++ AEV D + + + +A G ++ + +G +K + + + A+ V + Sbjct: 61 GRIQELTYLLEHAEVGD-APVELNEVAPGLVIT--AEVNGKEKKFLLGSREAAEFVDIDV 117 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 ++P+ A++GK++GD S AP G++ ++L + Sbjct: 118 YPETAPLGSAIMGKKVGDETSYTAPNGKEFAVKVLGIE 155 >gi|71894394|ref|YP_278502.1| transcription elongation factor GreA [Mycoplasma synoviae 53] gi|71851182|gb|AAZ43791.1| transcription elongation factor GreA [Mycoplasma synoviae 53] Length = 157 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +KI ++ + DK ++E + +R I A+ EARA GDLSENAEY A++ Q + E R Sbjct: 4 EKIFLSQETLDKYKKEYEKLVKVDRVEIQNALKEARAQGDLSENAEYDVARDKQAVVEAR 63 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE I+ +A++I + I+ G+ V+ ++ ++ + I+G +AD + +S Sbjct: 64 ILELEGILDKAQLI--KHKDENTISIGSKVTFLDLSTNKEDEVTIMGIHDADPFNKKISN 121 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152 SP+A A++ K+ GD + V G + YEI Sbjct: 122 YSPLATAMMSKKEGDTVEVE---GLEKYEI 148 >gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum DSM 7109] gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 174 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q Sbjct: 1 MADNQTTWLTQESYDRLNAELFALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116 E R+A LE ++ A + + SG + + + DK+ + I G + ++ + Sbjct: 60 EEARIAYLEELLDNATIGEAPQESGVALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPE 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147 S +P+ AL+G ++G+ P G+ Sbjct: 120 LETYSTDAPLGAALVGAKVGETREYETPTGD 150 >gi|300743808|ref|ZP_07072828.1| transcription elongation factor GreA [Rothia dentocariosa M567] gi|311113051|ref|YP_003984273.1| transcription elongation factor GreA [Rothia dentocariosa ATCC 17931] gi|300380169|gb|EFJ76732.1| transcription elongation factor GreA [Rothia dentocariosa M567] gi|310944545|gb|ADP40839.1| transcription elongation factor GreA [Rothia dentocariosa ATCC 17931] Length = 165 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D++ QEL + R I+ I+ AR GDL EN Y AA++ Q NE R+ + Sbjct: 8 WLTQDAYDRLTQELEYLSGPYRQEIVDRIAAARDEGDLRENGGYHAARDEQGKNEARINQ 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ------EADVQSGL 119 L++++ A+V D + G +A G ++E + ++G + A+ + Sbjct: 68 LKHLLENAQVGDAPSDDG-VVALGM---VIEAEVASRSMKFLLGSREIEETLPANSDLKV 123 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S SP+ A++G + GD ++ AP G E T +I+ V Sbjct: 124 FSEKSPMGAAILGAKEGDEVTYLAPNGKELTAKIVSVK 161 >gi|256389881|ref|YP_003111445.1| transcription elongation factor GreA [Catenulispora acidiphila DSM 44928] gi|256356107|gb|ACU69604.1| transcription elongation factor GreA [Catenulispora acidiphila DSM 44928] Length = 164 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 1/142 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D++ EL+ R I + I AR GDL EN Y AAKE Q E R+ + Sbjct: 10 WLTQDAYDRLTAELQQLSGPGRVEIAQKIEAAREEGDLRENGGYHAAKEEQGKIELRIRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L ++ A+V D S SG + + + D + + ++A + S SP Sbjct: 70 LTQLLEHAKVGD-SVESGVAVPGAVVTIAFDGDEDDTLTFLLGSREDAADNMEVYSAQSP 128 Query: 126 IARALIGKELGDIISVNAPGGE 147 + A+ GK++G+ P G+ Sbjct: 129 LGGAINGKKIGEQAEYELPNGK 150 >gi|254492017|ref|ZP_05105195.1| transcription elongation factor GreB [Methylophaga thiooxidans DMS010] gi|224462832|gb|EEF79103.1| transcription elongation factor GreB [Methylophaga thiooxydans DMS010] Length = 147 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 ++ QEL R R +++A++ A A GD SENAEY K+ + R+ L+ I Sbjct: 3 RLNQELSERWA-RRREVVQALAAAAAEGDRSENAEYIYRKKELRELDRRIRYLQKRIPDL 61 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 V+ R+ F A V+L E +G++ Y+IVG E D G +S+ SP+ARAL+GK Sbjct: 62 NVVHDVPDDTGRVFFAAWVTL-ETEAGEEVTYRIVGPDEIDHAKGNISVDSPLARALLGK 120 Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157 + D + G K Y IL + + Sbjct: 121 MIDDDAIIRVEDGRKQYYILAIDY 144 >gi|308176537|ref|YP_003915943.1| transcription elongation factor GreA [Arthrobacter arilaitensis Re117] gi|307744000|emb|CBT74972.1| transcription elongation factor GreA [Arthrobacter arilaitensis Re117] Length = 165 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 5/152 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + +D++Q EL + R I+ I +AR+ GDL EN Y AA+E Q E R+ Sbjct: 10 VWLTQEAYDRLQDELTFLSGPGRAEIVARIEQARSEGDLKENGGYHAAREEQGKAEARIL 69 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSIS 123 L++++ RA+V D G I + + +GD+ + + A D + S Sbjct: 70 YLKDLLRRADVGDAPADDG--IVEPGMLVVANI-AGDETTFLFGSREVAGDTDLEVYSEQ 126 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SPI A+ G ++GD +S AP G + EI+ Sbjct: 127 SPIGVAVHGAKVGDKLSYLAPNGRDIKVEIIS 158 >gi|295395791|ref|ZP_06805979.1| transcription elongation factor GreA [Brevibacterium mcbrellneri ATCC 49030] gi|294971326|gb|EFG47213.1| transcription elongation factor GreA [Brevibacterium mcbrellneri ATCC 49030] Length = 163 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D+ +T + F+++ +EL R I + I AR GDL EN Y AA+E Q E Sbjct: 7 ADQTWLTPQAFERLTKELEHLSGPGRTEIAERIESARDEGDLKENGGYHAAREEQGKLEA 66 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV- 120 R+ ELE+++ A V + + G V+L G +K ++G +E + V Sbjct: 67 RIRELEHLLQNANVSEPD-GDESTVTPGKLVTLK---MGRRKIEFLLGSREIISEEDHVD 122 Query: 121 --SISSPIARALIGKELGDIISVNAPGGE-KTYEI 152 S SP+ A+ GK++GD + AP G I Sbjct: 123 VFSEKSPLGAAVNGKKVGDKVEYEAPNGRMIEVTI 157 >gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium K411] gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411] Length = 173 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ Sbjct: 8 WLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123 LE ++ A + + SG + + + DK+ + I G + ++ S Sbjct: 67 LEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLETYSTD 126 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 +P+ A++G ++G+ P G+ + I+ Sbjct: 127 APLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158 >gi|171912645|ref|ZP_02928115.1| transcript cleavage factor/unknown domain fusion protein [Verrucomicrobium spinosum DSM 4136] Length = 627 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 +K + EL + + P+ K I AR YGDL EN EY++A++ Q + + E + R Sbjct: 470 EKRKIELEELVRVKIPQNKKDIQIAREYGDLRENFEYKSARQHQAVLLRMQSTYERELRR 529 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 A D +S + + G V L + +G + I+G + D ++S S +A+ALIG Sbjct: 530 ARGTDFVGVSTETVGIGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEMAKALIG 589 Query: 133 KELGDIISVNAPG-GEKTYEILQVL 156 K +GD + G + +I+ + Sbjct: 590 KRVGDEAELPTDTHGTRKVKIVSIR 614 >gi|254518202|ref|ZP_05130258.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA] gi|226911951|gb|EEH97152.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA] Length = 154 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++EL +R +R I K + A A+GD SENAEY+ A N+ R+ L Sbjct: 5 LTEENIKKLREELEYRMTVKRAEIAKEKAIAAAHGDRSENAEYKEACANYRENDNRIQYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 N+I+ A +ID + + + + + +V ++D ++ +SI S + Sbjct: 65 LNMISTATIIDDEEIDKSTLGINSKAKIKFIEDDFEDVVTLVTVMDSDPENMCISIESDL 124 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 AL GK++GDI+ V+AP + + EIL++L Sbjct: 125 GLALKGKKVGDIVEVDAPEDKYSVEILEIL 154 >gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis SK121] gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis SK121] Length = 167 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 11 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E D + + S + Sbjct: 70 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPN 129 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+ ++GD N P G Sbjct: 130 SPLGGALLEAKVGDTREYNLPNG 152 >gi|291456474|ref|ZP_06595864.1| putative transcription elongation factor GreA [Bifidobacterium breve DSM 20213] gi|291381751|gb|EFE89269.1| putative transcription elongation factor GreA [Bifidobacterium breve DSM 20213] Length = 159 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120 R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++ Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGNGSVVTI--ELNGNEMTYVLGSRDIVAGTDYEIM 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 + SPI RA+ G ++GD +S AP G Sbjct: 120 TPDSPIGRAIEGAKVGDTVSYTAPNG 145 >gi|325971211|ref|YP_004247402.1| transcription elongation factor GreA [Spirochaeta sp. Buddy] gi|324026449|gb|ADY13208.1| transcription elongation factor GreA [Spirochaeta sp. Buddy] Length = 906 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 74/147 (50%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T+ + ++EL + Q E P + + I AR GDL EN+EY+ KE QNL + L Sbjct: 754 TAASLEAKKKELEYIQHVELPEVAREIGTAREMGDLRENSEYKYGKEKQNLLNNTLRRLA 813 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA VI + +I FG V LV+ G + Y I+G E++ ++++S+P Sbjct: 814 EEIDRATVISKDKVDTTKIGFGTKVVLVDHTKGSEVVYTIMGPWESNPDENIINLSAPFG 873 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQ 154 RAL+ E+G+ + + + + Sbjct: 874 RALLNHEIGERFTFVLNDQPYDFTVKE 900 >gi|320532416|ref|ZP_08033252.1| putative transcription elongation factor GreA [Actinomyces sp. oral taxon 171 str. F0337] gi|320135363|gb|EFW27475.1| putative transcription elongation factor GreA [Actinomyces sp. oral taxon 171 str. F0337] Length = 161 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E Sbjct: 1 MSEQSQGTWLTQEAYDRLSTELEHRKTAERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116 LNE R+ +LE + A++ + + T + G ++ + + G + DV Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSVSAGTIVTAKVA----GKEQVFALGGQEITEDVP 116 Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 G + S +P+ +AL+G GD +S AP G K EI++V Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVSYEAPTGRKIKAEIVKVE 159 >gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4] gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4] Length = 163 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ Sbjct: 8 WLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRH 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A+V + G + + ++K ++ A+ + S SP Sbjct: 67 LQELLRNAKVGEAPDDDGTAGPGKVLTVKYDGDDEEEKFLLATREEGAEGALDVYSPESP 126 Query: 126 IARALIGKELGDIISVNAPGGE 147 + +AL+G + G+ P G+ Sbjct: 127 LGKALLGAKEGESREYELPNGK 148 >gi|239917044|ref|YP_002956602.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] gi|281414493|ref|ZP_06246235.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] gi|239838251|gb|ACS30048.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665] Length = 164 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AE Sbjct: 10 WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A V + + G + G V+ V +GD+ + + A D + S Sbjct: 70 LKHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTFLFGNREIAADDESLEVYSER 126 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SP+ A+ G + GD +S AP G + EI V Sbjct: 127 SPLGEAINGAKQGDKVSYTAPNGKDIKVEIKDVQ 160 >gi|269794151|ref|YP_003313606.1| transcription elongation factor [Sanguibacter keddieii DSM 10542] gi|269096336|gb|ACZ20772.1| transcription elongation factor [Sanguibacter keddieii DSM 10542] Length = 160 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D +T + D++Q EL E R I I+ AR GDL EN Y AA+E Q NE R Sbjct: 5 DVTWLTQEAHDRLQAELAHLTGEGRTDITDRIAAARDEGDLKENGGYHAAREEQAKNEAR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVS 121 + EL + + + G V+ + +GD+ + + + AD + S Sbjct: 65 IRELTEKLRSVRIGTPP--DDGVVEQGMVVT--AEVAGDEMVFLLGSREIADTTDIDVYS 120 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SP+ A++GK++G+ + AP G+ Sbjct: 121 EKSPLGAAILGKKIGETAAYTAPNGK 146 >gi|225551922|ref|ZP_03772862.1| transcription elongation factor GreA [Borrelia sp. SV1] gi|225370920|gb|EEH00350.1| transcription elongation factor GreA [Borrelia sp. SV1] Length = 901 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 74/145 (51%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 752 LNKKQKELKYLKEVEIPGNSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 871 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896 >gi|111114955|ref|YP_709573.1| transcript cleavage factor/unknown domain fusion protein [Borrelia afzelii PKo] gi|216263923|ref|ZP_03435917.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia afzelii ACA-1] gi|110890229|gb|ABH01397.1| transcription elongation factor [Borrelia afzelii PKo] gi|215979967|gb|EEC20789.1| transcription elongation factor GreA (Transcript cleavage factor greA) [Borrelia afzelii ACA-1] Length = 900 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 73/145 (50%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+ Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 GD ++ Y + ++ Sbjct: 871 DSREGDSLNFIINNTNFKYFVKKIE 895 >gi|115378949|ref|ZP_01466082.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|310818253|ref|YP_003950611.1| transcription elongation factor, GreA/GreB family [Stigmatella aurantiaca DW4/3-1] gi|115364025|gb|EAU63127.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|309391325|gb|ADO68784.1| Transcription elongation factor, GreA/GreB family [Stigmatella aurantiaca DW4/3-1] Length = 169 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DK +T +G+ +Q+EL E E E A + + E R Sbjct: 26 DKRYITPEGYRALQEELARLLGPEAGE---------------EGQEAWGAADRKRERERR 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 L + V+ R+ FGA V+L ++ G + Y+IVG EADV++G +S+ Sbjct: 71 AHFLSETLEEVRVVAPEPSQEGRVFFGAWVTLEDEE-GAEVTYRIVGPDEADVKAGRLSV 129 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+GKE+G+ + V P G Y + +V + Sbjct: 130 ESPLARALLGKEVGEAVPVERPRGAVEYTLTRVAY 164 >gi|332298363|ref|YP_004440285.1| transcription elongation factor GreA [Treponema brennaborense DSM 12168] gi|332181466|gb|AEE17154.1| transcription elongation factor GreA [Treponema brennaborense DSM 12168] Length = 899 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 81/150 (54%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT+K F++ +Q+L + P K I EA A GDL ENAEY+AAKE Q L +L Sbjct: 746 VTAKMFEQKKQQLEHITSVDIPANSKEIGEALAQGDLRENAEYKAAKERQTLLASTATKL 805 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I RA + D +T + R++FG V+L SG+ + Y I+G E+D + ++S SP Sbjct: 806 QDEINRARIFDPTTGTTARVSFGTVVTLKNDVSGESEEYTILGPWESDPDNKVISYMSPF 865 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A++ + +S + Y + ++ Sbjct: 866 GNAILNAKEKQALSFVINEHDYKYTVEKIE 895 >gi|325955918|ref|YP_004286528.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|325332483|gb|ADZ06391.1| transcription elongation factor GreA [Lactobacillus acidophilus 30SC] gi|327182753|gb|AEA31200.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1118] Length = 143 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 13/156 (8%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ RPR IK + ARA GDLSEN EY AK Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-GRPRRIKILQAARALGDLSENTEYTEAKRYLG--- 56 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + E+++ T ++ G TV L + D + Y+IVG EAD+ G + Sbjct: 57 -------KQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKI 107 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G +V AP GE I++V Sbjct: 108 SFGSPLGQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143 >gi|23465584|ref|NP_696187.1| transcription elongation factor GreA [Bifidobacterium longum NCC2705] gi|189439631|ref|YP_001954712.1| transcription elongation factor [Bifidobacterium longum DJO10A] gi|213692643|ref|YP_002323229.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296453851|ref|YP_003660994.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. longum JDM301] gi|312133029|ref|YP_004000368.1| grea [Bifidobacterium longum subsp. longum BBMN68] gi|317481865|ref|ZP_07940892.1| prokaryotic transcription elongation factor [Bifidobacterium sp. 12_1_47BFAA] gi|322688807|ref|YP_004208541.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis 157F] gi|322690797|ref|YP_004220367.1| transcription elongation factor GreA [Bifidobacterium longum subsp. longum JCM 1217] gi|23326251|gb|AAN24823.1| transcription elongation factor GreA [Bifidobacterium longum NCC2705] gi|189428066|gb|ACD98214.1| Transcription elongation factor [Bifidobacterium longum DJO10A] gi|213524104|gb|ACJ52851.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517127|emb|CBK70743.1| Transcription elongation factor [Bifidobacterium longum subsp. longum F8] gi|296183282|gb|ADH00164.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp. longum JDM301] gi|311774017|gb|ADQ03505.1| GreA [Bifidobacterium longum subsp. longum BBMN68] gi|316916656|gb|EFV38051.1| prokaryotic transcription elongation factor [Bifidobacterium sp. 12_1_47BFAA] gi|320455653|dbj|BAJ66275.1| transcription elongation factor GreA [Bifidobacterium longum subsp. longum JCM 1217] gi|320458793|dbj|BAJ69414.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460143|dbj|BAJ70763.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis 157F] Length = 159 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120 R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++ Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 + SPI +A+ G ++GD++S AP G Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145 >gi|255327346|ref|ZP_05368420.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC 25296] gi|255295626|gb|EET74969.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC 25296] Length = 165 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 11/164 (6%) Query: 1 MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + +T FD++ QEL R I+ I++AR GDL EN Y AA++ Q Sbjct: 1 MAENTGAWLTQDAFDRLTQELEHLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---- 114 NE R+ +L++++ A++ + + + ++ G + + + +G + + + D Sbjct: 61 NEARIKQLKHLLETAQIGE-APVDDGVVSHG--MVIEAEVAGRTLKFLLGSREIEDTLPA 117 Query: 115 -VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVL 156 + S SP+ A++G + GD ++ AP G +I+ V Sbjct: 118 GTDLKVFSEKSPLGAAIMGAKQGDEVTYQAPNGNDLVAKIISVT 161 >gi|261337288|ref|ZP_05965172.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM 20093] gi|270277656|gb|EFA23510.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM 20093] Length = 161 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 11/159 (6%) Query: 1 MVDKI-----PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55 M D++ +T DK+Q+EL WRQ E R I + I+ ARA GDLSEN YQAA+E Sbjct: 1 MADEVEEKVVLLTQDAVDKLQEELTWRQGEYRDEITERIAAARAEGDLSENGGYQAAREE 60 Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-D 114 Q NEGR+ EL + A++I+ + G+ V++ G++ Y I A Sbjct: 61 QGKNEGRINELIVKLRNAKIIEAPE--AGVVGNGSVVTI--DLGGNEMTYVIGSRDIAVA 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 ++S SP+ A++G ++GD +S P G + +++ Sbjct: 117 TDIDVISPDSPVGAAIMGAKVGDTVSYTLPNG-REMKVV 154 >gi|289705947|ref|ZP_06502321.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Micrococcus luteus SK58] gi|289557284|gb|EFD50601.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Micrococcus luteus SK58] Length = 164 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AE Sbjct: 10 WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A V + + G + G V+ V +GD+ + + A D + S Sbjct: 70 LKHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTFLFGNREIAADDESLEVYSER 126 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 SP+ A+ G + GD +S AP G + E+ V Sbjct: 127 SPLGEAINGAKKGDKVSYTAPNGKDIKVEVKDVQ 160 >gi|325663588|ref|ZP_08151995.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470274|gb|EGC73506.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium 4_1_37FAA] Length = 167 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+++ D + TV L + + + +++V + GL+S SPI Sbjct: 65 ERMIKTAKIV-SDESKEDEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++GK+ GD + + G Y +++ Sbjct: 124 GKAILGKKAGDRVFIRVSGDAGYYVVVK 151 >gi|224282816|ref|ZP_03646138.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] gi|310287270|ref|YP_003938528.1| transcription elongation factor greA [Bifidobacterium bifidum S17] gi|311064119|ref|YP_003970844.1| transcription elongation factor [Bifidobacterium bifidum PRL2010] gi|313139975|ref|ZP_07802168.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] gi|309251206|gb|ADO52954.1| Transcription elongation factor greA [Bifidobacterium bifidum S17] gi|310866438|gb|ADP35807.1| GreA Transcription elongation factor [Bifidobacterium bifidum PRL2010] gi|313132485|gb|EFR50102.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB 41171] Length = 159 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + FD ++ EL RQ + R I K I+ ARA GDLSEN YQAA+E Q NEGR+ Sbjct: 7 VLLTQEAFDTLKDELAHRQGQYREEITKRIAAARAEGDLSENGGYQAAREEQAKNEGRIN 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSIS 123 EL + A +++ ++ G+ V+L + +G + Y + + + ++S Sbjct: 67 ELTVKLRNATIVEAPK--AGKVGNGSLVTL--ELAGREMTYALGSRDIKVATKYDVISPE 122 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SPI A++G GD +S AP G + +++ Sbjct: 123 SPIGAAILGANEGDTVSYKAPNGREISVVIK 153 >gi|257069437|ref|YP_003155692.1| transcription elongation factor GreA [Brachybacterium faecium DSM 4810] gi|256560255|gb|ACU86102.1| transcription elongation factor GreA [Brachybacterium faecium DSM 4810] Length = 163 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D++ +EL + R I + I+ AR GDL EN Y AA+E Q E R+A+ Sbjct: 9 WLTQDAYDRLAKELEELEGPGRTEIAERIAAARDEGDLKENGGYHAAREEQGKMEARIAD 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A V + G + G V + +G ++ + + + AD L S Sbjct: 69 LQRLLKNAVVGEAPKDDG-VVEPGMVVVI--SMAGKERTFLLGNREIADGDEDLEVYSSE 125 Query: 124 SPIARALIGKELGDIISVNAPGGE 147 SP+ A+ G +GD + AP G+ Sbjct: 126 SPLGSAIHGSRVGDTVDYTAPNGK 149 >gi|253579767|ref|ZP_04857035.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848766|gb|EES76728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 166 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 1/140 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T K +KIQQE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 2 KEKLTQKDVEKIQQEIDHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LEN++ A ++ + D + V + + + + Y++V + +SI Sbjct: 62 RYLENMLKTATIVSDDSKD-DEVGMDDIVEVYFEEDDEIEKYKLVTSIRGNSMENRISIE 120 Query: 124 SPIARALIGKELGDIISVNA 143 SPI AL G ++GD + V Sbjct: 121 SPIGMALKGHKVGDRVEVKV 140 >gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM 43247] gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM 43247] Length = 164 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKGELDSLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E S S Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVTVYYDGDEKDTETFLIATREEGAQGGDLETYSPS 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ + P G Sbjct: 127 SPLGSALIDAKVGETREYSVPSG 149 >gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1] gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4] gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1] gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4] Length = 164 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKSELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E D + + S + Sbjct: 67 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ AL+ ++G+ P G Sbjct: 127 SPLGGALLEAKVGETREYTLPNG 149 >gi|152965067|ref|YP_001360851.1| transcription elongation factor GreA [Kineococcus radiotolerans SRS30216] gi|151359584|gb|ABS02587.1| transcription elongation factor GreA [Kineococcus radiotolerans SRS30216] Length = 165 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ E E R + K I +AR GDL ENA Y AAKE Q E R+ + Sbjct: 11 WLTQDAYDRLKAEYDRLSGEGRSELAKRIEQAREEGDLKENAGYHAAKEEQGKQELRIRQ 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISS 124 L +++ A+V + + GA V++ + +G++ + + + D + S S Sbjct: 71 LRHLLETAQVGEAPKSVAGEVTLGAVVTV--ELAGEEMRFLLGSREMGDGAGLDVYSEKS 128 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ A++G++ G+ ++ AP G Sbjct: 129 PLGAAVLGRQPGEDVTYTAPSG 150 >gi|239621777|ref|ZP_04664808.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514968|gb|EEQ54835.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 159 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAARETQSKNEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120 R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++ Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 + SPI +A+ G ++GD++S AP G Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145 >gi|329948133|ref|ZP_08295005.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 170 str. F0386] gi|328522866|gb|EGF49971.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 170 str. F0386] Length = 161 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E Sbjct: 1 MSEQSQGTWLTQEAYDRLSAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116 LNE R+ +LE + A++ + + T + G ++ + + G + DV Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSISAGTIVTAKVA----GKEQVFALGGQEITEDVP 116 Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 G + S +P+ +AL+G GD ++ AP G E +I++V Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVAYEAPTGREIQAQIVKVE 159 >gi|320094368|ref|ZP_08026155.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 178 str. F0338] gi|319978701|gb|EFW10257.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 178 str. F0338] Length = 159 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +RP I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRPEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 + S +P+ A+IG + GD I AP G EIL Sbjct: 117 VFSTQAPLGAAVIGHKAGDTIEFEAPTGRMIQVEILS 153 >gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM 10152] gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica IFM 10152] Length = 164 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKSELDALIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V T SG + + + D + + I +E S L S + Sbjct: 67 LQELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSDLETYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ P G Sbjct: 127 SPLGGALIDAKVGETREYTLPNG 149 >gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC BAA-974] gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC BAA-974] Length = 163 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M + + +T + D+++ EL RP + I+E R GDL EN Y AA+E Q Sbjct: 1 MTENVTWLTQEAHDRLKVELDTLIA-NRPALAAEINERREEGDLKENGGYHAAREEQGQQ 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117 E R+ +L++++ A+V T SG + + + D + + I +E + Sbjct: 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKNDTETFLIATREEGAQSGKL 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S +SP+ AL+ ++G+ P G Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNG 148 >gi|227546182|ref|ZP_03976231.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213163|gb|EEI81035.1| transcription elongation factor GreA [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 159 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%) Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120 R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++ Sbjct: 64 RIIELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 + SPI +A+ G ++GD++S AP G Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145 >gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC 43734] gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC 43734] Length = 173 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ Sbjct: 8 WLTQESYDRLNTELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITY 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123 LE ++ A + + SG + + + DK+ + I G + ++ S Sbjct: 67 LEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLETYSTD 126 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 +P+ A++G ++G+ P G+ + I+ Sbjct: 127 APLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158 >gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM 44985] gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM 44985] Length = 163 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M + + +T + D+++ EL RP + I+E R GDL EN Y AA+E Q Sbjct: 1 MTENVTWLTQEAHDRLKAELDSLIA-NRPVLAAEINERREEGDLKENGGYHAAREEQGQQ 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117 E R+ +L++++ A+V T SG + + + D + + I +E + Sbjct: 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKSDTETFLIATREEGAQGGKL 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146 + S +SP+ AL+ ++G+ P G Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNG 148 >gi|118594719|ref|ZP_01552066.1| transcription elongation factor GreB [Methylophilales bacterium HTCC2181] gi|118440497|gb|EAV47124.1| transcription elongation factor GreB [Methylophilales bacterium HTCC2181] Length = 144 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 1/144 (0%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +Q+EL + +RP +K IS A GD SEN +Y K+ + R+ L I A+ Sbjct: 1 MQRELSSLIKLDRPETVKVISWAAGNGDRSENGDYIYGKKKLRQIDSRIKFLLTAIEDAD 60 Query: 75 VIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 ++ ST + ++ FGA V L+++ S + +IVG E + G +S SP+A+ALIG+ Sbjct: 61 IVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWLSPLAKALIGR 120 Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157 D+I V P KTY IL+V + Sbjct: 121 TSSDLIEVQTPMNIKTYIILKVDY 144 >gi|326789147|ref|YP_004306968.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] gi|326539911|gb|ADZ81770.1| transcription elongation factor GreA [Clostridium lentocellum DSM 5427] Length = 155 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D +++E+ +R+ R + + + EARA+GDLSEN EY+AAK + NEGR+ Sbjct: 4 YLTQQDIDNMKKEIEYRKVVVRKQRNEEVKEARAHGDLSENYEYKAAKRERGRNEGRIKY 63 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE +I A +I +T +G+ + G V + Y+IV E D + +SI SP Sbjct: 64 LERMIKTATIITDNTEAGE-VGLGKLVDVYFIEDDMNIEYEIVTTMETDAINNKISIESP 122 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + + K +GDI+++++P GE + I + Sbjct: 123 LGKMIYKKRVGDIVNIDSPDGEYSVRIQSIR 153 >gi|283458641|ref|YP_003363276.1| transcription elongation factor [Rothia mucilaginosa DY-18] gi|283134691|dbj|BAI65456.1| transcription elongation factor [Rothia mucilaginosa DY-18] Length = 189 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 1 MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + +T FD++ QEL + R I+ I++AR GDL EN Y AA++ Q Sbjct: 25 MAENTGAWLTQDAFDRLTQELEYLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 84 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---- 114 NE R+ +L++++ A + D + + G + + + +G + + + D Sbjct: 85 NEARIKQLKHLLETAHIGD-TPADDGVVEHG--MVIEAEVAGRTLKFLLGSREIEDTLPA 141 Query: 115 -VQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 + S SP+ A++G + GD ++ AP G++ Sbjct: 142 GSDLKVFSEKSPLGAAIMGAKQGDEVTYTAPNGKE 176 >gi|315037460|ref|YP_004031028.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] gi|312275593|gb|ADQ58233.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL 1112] Length = 143 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 13/156 (8%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ RPR IK + A A GDLSEN EY AK Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-GRPRRIKILQAACALGDLSENTEYTEAKRYLG--- 56 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + E+++ T ++ G TV L + D + Y+IVG EAD+ G + Sbjct: 57 -------KQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKI 107 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ +A++ KE G +V AP GE I++V Sbjct: 108 SFGSPLGQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143 >gi|91775490|ref|YP_545246.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91709477|gb|ABE49405.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 165 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT GF +QQ+ +QE +P ++ + A ++ + + + Sbjct: 29 YVTPHGFKLLQQQASALEQERQPLTMRK--------------DDPAVQQRLAMIDRDLRY 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + A V+D +T D + FGATV + + +G+ + IVG+ EAD+ + VS SP Sbjct: 75 LQARLESAIVVDPATQPTDTVLFGATVEVED-ENGNSHTFMIVGEDEADIATNRVSWVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ALIG+++GD ++ + P G EI+ + + Sbjct: 134 LAKALIGQKIGDSVTWHRPAGNLELEIIAIHY 165 >gi|331083573|ref|ZP_08332684.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403784|gb|EGG83336.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium 6_1_63FAA] Length = 167 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE++ + D + + ++ + + Y++V + +SI SP+ Sbjct: 65 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++G GD + V Y +++ Sbjct: 124 GKAILGHREGDRVWVKINESAGYYIVIK 151 >gi|260587256|ref|ZP_05853169.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] gi|260542451|gb|EEX23020.1| transcription elongation factor GreA [Blautia hansenii DSM 20583] Length = 169 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L Sbjct: 7 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E ++ AE++ + D + + ++ + + Y++V + +SI SP+ Sbjct: 67 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 125 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++G GD + V Y +++ Sbjct: 126 GKAILGHREGDRVWVKINESAGYYIVIK 153 >gi|183601464|ref|ZP_02962834.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis HN019] gi|219683518|ref|YP_002469901.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis AD011] gi|241191036|ref|YP_002968430.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196442|ref|YP_002969997.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219070|gb|EDT89711.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis HN019] gi|219621168|gb|ACL29325.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis AD011] gi|240249428|gb|ACS46368.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250996|gb|ACS47935.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794025|gb|ADG33560.1| transcription elongation factor GreA [Bifidobacterium animalis subsp. lactis V9] Length = 160 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ Sbjct: 8 VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 67 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSIS 123 EL + A++I+ + G+ V++ + G++ Y I ++S Sbjct: 68 ELIVKLRNAKIIEAPK--AGEVGNGSLVTI--ELGGNEMQYVIGSRDITVATDYDVISPE 123 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SPI A+IG ++GD+++ AP G E + I + Sbjct: 124 SPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 155 >gi|295110686|emb|CBL24639.1| Transcription elongation factor [Ruminococcus obeum A2-162] Length = 166 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +K +T + +KI++E+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE Sbjct: 1 MGEK--LTKRDVEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNE 58 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE ++ A V+D S+ S D + V + + G+ + Y++V + V Sbjct: 59 SRIRYLERMLKTATVVDDSSKS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRV 117 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTY 150 SI SPI +AL G +GD + V Y Sbjct: 118 SIESPIGKALKGHRVGDRVLVKVNENVSYY 147 >gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN] gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923] gi|6226624|sp|P46808|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|254799564|sp|B8ZT53|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae] gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923] Length = 164 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE + + + S + Sbjct: 67 LQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKLEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ S P G Sbjct: 127 SPLGGALIDAKVGETRSYTVPNG 149 >gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] Length = 167 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 1/144 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ Sbjct: 11 WLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRH 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A+V + G E + D+K ++ A+ + + S SP Sbjct: 70 LQELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDEDEKFLLATREEGAEGELDVYSPESP 129 Query: 126 IARALIGKELGDIISVNAPGGEKT 149 + +AL+G + G+ P G+ Sbjct: 130 LGKALLGAKEGESREYELPNGKVQ 153 >gi|331091714|ref|ZP_08340548.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403471|gb|EGG83030.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium 2_1_46FAA] Length = 167 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTEEDIKKMEEEIEYRRLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + +I A+++ + D + V + ++ + + +++V + +S SPI Sbjct: 65 QRMIRTAQIVSDDS-KEDEVGINKAVEVYFEDDDECETFKLVTTVRGNSIDNRISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++G + GD + V Y +++ Sbjct: 124 GKAILGHKAGDRVFVKVNENAGYYVVIK 151 >gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris AB-18-032] gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris AB-18-032] Length = 165 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +D+++ EL RP I I+ R GDL EN Y AA+E Q EGR+ Sbjct: 11 WLSQDAYDRLKAELDELIA-NRPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + T D +A G V++ + D ++G +E + L S Sbjct: 70 LKELLRTAQVGEAPT--ADAVAPGMVVTIYFDDDADDTETFLLGSREIASTTDLTVYSPE 127 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S + +A++G + G + AP G + ++ Sbjct: 128 SALGKAILGGKAGQTCTYTAPSGADIKVTVVS 159 >gi|330836574|ref|YP_004411215.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Spirochaeta coccoides DSM 17374] gi|329748477|gb|AEC01833.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Spirochaeta coccoides DSM 17374] Length = 897 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 69/149 (46%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T D + EL + P + K I EAR GDL EN+EY+ KE Q L ++ +L Sbjct: 745 TQASLDAKRAELDKIMNIDIPEVAKEIGEARELGDLRENSEYKYGKEKQTLLNAQIKKLL 804 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+VI + + FG +SL + Y ++G E++ ++S +P+ Sbjct: 805 EEIDRAQVIQPGAVDTSKTGFGTRISLHDNIEDKDVVYTLMGPWESEPSKNILSFQAPLG 864 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 L+ K +G S + + +L++ Sbjct: 865 TQLMNKTVGQNFSFEINDKKYDFTVLKIE 893 >gi|291548409|emb|CBL21517.1| Transcription elongation factor [Ruminococcus sp. SR1/5] Length = 166 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 1/151 (0%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T K +KI+QE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 2 REQLTRKDVEKIEQEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ A ++ ++ S D + V ++ + + + Y++V + +SI Sbjct: 62 RYLERMLKTASIVSDASRS-DEVGMDDIVEVLFEEDNEVEKYKLVTSIRGNSMENRISIE 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SPI +AL G +GD + V Y +++ Sbjct: 121 SPIGKALRGHRVGDRVEVKVNDDYSYYLVIK 151 >gi|189219263|ref|YP_001939904.1| transcription elongation factor GreA fused to uncharacterized associated domain [Methylacidiphilum infernorum V4] gi|189186121|gb|ACD83306.1| Transcription elongation factor GreA fused to uncharacterized associated domain [Methylacidiphilum infernorum V4] Length = 614 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 + ++ ++EL +++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE++ Sbjct: 458 ESLEQKKKELDELVRKKIPENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESM 517 Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I+RA D S + + G VS + + + I+G +++ G++S + ++ Sbjct: 518 ISRARATDFSNVDTTTVNIGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQS 577 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156 L+G + GD++ V+ G I ++ Sbjct: 578 LLGHKTGDVLQVSLEDGITTEIRIDKIS 605 >gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca ATCC 27029] gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5] gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca ATCC 27029] gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5] Length = 166 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ Sbjct: 12 WLSQDAYDRLQAELDELIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + D ++ G V + + D ++G +E + L S Sbjct: 71 LKELLRTAKVGEAP--DTDAVSPGMVVKIYFDDDADDSETFLLGSREIASTTDLTVYSPE 128 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S + +A++G + G + AP G + I+ Sbjct: 129 SALGKAILGGKAGQTCTYTAPSGADIKVTIVS 160 >gi|262189677|ref|ZP_06048051.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93] gi|262034443|gb|EEY52809.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93] Length = 144 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 94/126 (74%), Gaps = 2/126 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG + Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119 Query: 121 SISSPI 126 S++SP+ Sbjct: 120 SVNSPM 125 >gi|325973303|ref|YP_004250367.1| transcription elongation factor GreA [Mycoplasma suis str. Illinois] gi|323651905|gb|ADX97987.1| transcription elongation factor GreA [Mycoplasma suis str. Illinois] Length = 158 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 3/158 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E Sbjct: 1 MARHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEK 60 Query: 62 RMAELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 ++ E+E I+ +ID S + G+ V + + + Y+I+G +AD + Sbjct: 61 KVQEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANM 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SPIA+ ++GK +G V +IL++L Sbjct: 121 KISNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEIL 158 >gi|145641637|ref|ZP_01797214.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145273684|gb|EDK13553.1| transcription elongation factor GreA [Haemophilus influenzae 22.4-21] Length = 107 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 1/102 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 EGR+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++ Sbjct: 6 FCEGRIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIK 65 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SGL+S++SPIAR LIGKEL D +++ PGG ++I++V +I Sbjct: 66 SGLISVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 107 >gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis DSM 43017] gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis DSM 43017] Length = 172 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 1/144 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D+++ EL RP I I+ +R GDL EN Y AA+E Q E R+ Sbjct: 11 WLTQDAYDRLKNELDELIA-NRPVIAAKINASREEGDLKENGGYHAAREEQGQQEARIRH 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ ++ A+V + G + + ++ ++ + S SP Sbjct: 70 LQELLRSAKVGEAPKDDGIAEPGMVLTVRYDGDDDEETFLLATREEGGSGSLEVYSPDSP 129 Query: 126 IARALIGKELGDIISVNAPGGEKT 149 + +AL+G + + P G+ Sbjct: 130 LGKALLGAKENESREYQLPNGKTQ 153 >gi|226322649|ref|ZP_03798167.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758] gi|225208986|gb|EEG91340.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758] Length = 167 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 2/150 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T KI++E++ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ Sbjct: 2 REQLTESDVKKIEEEIQHRKHVIRKEAIEAVKEARAQGDLSENFEYHAAKKYKNQNESRI 61 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE ++ AE++ ++ G V++ +++ Y++V + +S Sbjct: 62 RYLERMLKNAEIVSDTSEEG-VAGINNRVTVYFPEDDEEETYKLVTSIRGNSIHNYISTE 120 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153 SPI +A+ G + G+ + V + +YE++ Sbjct: 121 SPIGKAIFGHKAGETVKVKV-SDDYSYELV 149 >gi|160938130|ref|ZP_02085486.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC BAA-613] gi|158438934|gb|EDP16690.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC BAA-613] Length = 167 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 2/150 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L Sbjct: 5 LTANDIKKMQEEIEYRKLVVRREALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A +I ++ G+ + G TV + + + + Y++V + GL+SI SP+ Sbjct: 65 EKMIKTARIISNNSREGE-VGLGDTVEVYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155 +A+ G+++GD + V EI + Sbjct: 124 GKAIRGRKMGDKVYVKVDDHFGYDVEIRSI 153 >gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae] Length = 202 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 46 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 104 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L++++ A+V + SG + + D + + I QE + + + S + Sbjct: 105 LQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKLEVYSPN 164 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ S P G Sbjct: 165 SPLGGALIDAKVGETRSYTVPNG 187 >gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM 43827] gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM 43827] Length = 162 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +T + +D+++ EL E RP I I+ R GDL EN Y AA+E Q E Sbjct: 4 TEVTWLTQEAYDRLKAELDEMI-ENRPVIAAEINARREEGDLRENGGYHAAREEQGKQEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ +L+ ++ A+V + T++G E + ++ ++ A + + S Sbjct: 63 RIRQLQELLRVAKVGEAPTVTGIAAPGMVLTVRYEGDDETEEFLLATREEGAHGGTEVYS 122 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SSP+ +AL+G + G+ P G Sbjct: 123 PSSPLGKALLGAKEGETREYELPNG 147 >gi|145593481|ref|YP_001157778.1| transcription elongation factor GreA [Salinispora tropica CNB-440] gi|145302818|gb|ABP53400.1| transcription elongation factor GreA [Salinispora tropica CNB-440] Length = 165 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ Sbjct: 11 WLSQEAHDRLQAELDGLIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRIVY 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + T D +A G V++ + D ++G +E + L S Sbjct: 70 LKELLRTAQVGEAPT--ADTVAPGMVVTIYFDDDKDDTERFLLGSREISSTTDLTVYSPE 127 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S I +A++G G + AP G + ++ Sbjct: 128 SAIGQAILGCRPGQTCTYTAPSGADIKVTVVA 159 >gi|331087098|ref|ZP_08336171.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409187|gb|EGG88638.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 167 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I A+++ D + TV L + + + +++V + GL+S SPI Sbjct: 65 ERMIKTAKIV-SDESKEDEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + ++GK+ GD + + G Y +++ Sbjct: 124 GKVILGKKAGDRVFIRVSGDAGYYVVIK 151 >gi|307128689|ref|YP_003880719.1| putative transcription elongation factor GreB [Candidatus Sulcia muelleri CARI] gi|306483151|gb|ADM90021.1| putative transcription elongation factor GreB [Candidatus Sulcia muelleri CARI] Length = 158 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 89/137 (64%), Gaps = 1/137 (0%) Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 + ER +IIKAISEAR GDLSEN+EY AAKE Q + E ++ L+ ++ +I+IS Sbjct: 21 QLETIERKKIIKAISEARDKGDLSENSEYDAAKEAQKILELKIFNLKLKLSNTRLIEISK 80 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 +S +++ V + ++G+ +NY +V + E++++ +SI+SPIA LIGK++GDIIS Sbjct: 81 ISTSQVSIFTKVKIKNIDNGNYQNYTLVPESESNIKKNKISINSPIAIGLIGKKIGDIIS 140 Query: 141 VNAPGGE-KTYEILQVL 156 + P + +++++ Sbjct: 141 IKLPNNKIINLKLIKIK 157 >gi|160878872|ref|YP_001557840.1| GreA/GreB family elongation factor [Clostridium phytofermentans ISDg] gi|160427538|gb|ABX41101.1| GreA/GreB family elongation factor [Clostridium phytofermentans ISDg] Length = 167 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T DK+Q+E+ +R+ R I A+ EARA+GDLSEN EY AAK+ +N NEGR+ L Sbjct: 5 LTKNDIDKMQEEIEYRKLTVRKEAIDAVKEARAHGDLSENFEYYAAKKDKNKNEGRIRYL 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E +I AEVI+ + S D I TVS+ + + + Y+++ + GL+SI SP+ Sbjct: 65 ERMIKTAEVIEDHS-SEDEIGINNTVSIYFEEDNEIEKYKLITTVRENSLQGLISIESPL 123 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 +A++G ++ D + V Y I++ Sbjct: 124 GKAILGHKVEDRVYVKVRDDYGYYVIIK 151 >gi|159036522|ref|YP_001535775.1| transcription elongation factor GreA [Salinispora arenicola CNS-205] gi|157915357|gb|ABV96784.1| transcription elongation factor GreA [Salinispora arenicola CNS-205] Length = 165 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ Sbjct: 11 WLSQEAYDRLQAELDGLIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + T D IA G V++ + D ++G +E + L S Sbjct: 70 LKELLRTAQVGEAPT--ADTIAPGMVVTIYFDDDKDDTERFLLGSREIASTTDLTVYSPE 127 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S I +A++G G + AP G + ++ Sbjct: 128 SAIGQAILGCRSGQTCTYTAPSGADIKVTVVA 159 >gi|300934084|ref|ZP_07149340.1| transcription elongation factor GreA [Corynebacterium resistens DSM 45100] Length = 173 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 6/159 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q Sbjct: 1 MADNQTTWLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116 E R+A LE ++ A + + SG + + + DK+ + I G + ++ Sbjct: 60 EEARIAYLEELLDNATIGEAPQESGVALVGSVIHVYYDDDEDDKETFLIGTRGLESSNPD 119 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 S +P+ A++G ++G+ P G+ I+ Sbjct: 120 LETYSTDAPLGAAIVGAKVGESREYQTPNGDTVKVTIVS 158 >gi|298345920|ref|YP_003718607.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|304390376|ref|ZP_07372329.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654508|ref|ZP_07907414.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC 51333] gi|315657583|ref|ZP_07910465.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235981|gb|ADI67113.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|304326132|gb|EFL93377.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490972|gb|EFU80591.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC 51333] gi|315492055|gb|EFU81664.1| transcription elongation factor GreA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 161 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 K +T FD++Q EL R R I K I AR GDL EN Y AA++ Q+ NE Sbjct: 5 AKKNWMTQASFDRLQAELDERTGPIRSEITKKIDAARREGDLKENGGYHAARDEQSQNET 64 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ EL+ I+ AEV + +T I G+ +VE G KK ++G ++A + + Sbjct: 65 RILELQEILKYAEVGEAAT--DGTIGPGS---VVEAKVGPKKMTFLLGSRDAAKGMDIQV 119 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154 S +P+ AL G GD + AP G+K E+L Sbjct: 120 FSPDAPLGVALAGHRTGDTVEYVAPTGKKIKVEVLD 155 >gi|325989739|ref|YP_004249438.1| transcription elongation factor GreA [Mycoplasma suis KI3806] gi|323574824|emb|CBZ40484.1| Transcription elongation factor GreA [Mycoplasma suis] Length = 161 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++ Sbjct: 6 RHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKV 65 Query: 64 AELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 E+E I+ +ID S + G+ V + + + Y+I+G +AD + + Sbjct: 66 QEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SPIA+ ++GK +G V +IL++L Sbjct: 126 SNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEIL 161 >gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita DSM 44233] gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita DSM 44233] Length = 163 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 5/152 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I+ R GDL EN Y AA++ Q E R+ Sbjct: 8 WLTQEAHDRLKHELDELVLH-RPVIAAEINARREEGDLKENGGYHAARDEQAKQESRIRH 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ--SGLVSIS 123 L+ ++ A+V ++ + G V++ D K ++G +E V + S Sbjct: 67 LQELLRDAQVG-VAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVHGSMPVYSPQ 125 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 SP+ +A++G G+ P G + +++ Sbjct: 126 SPLGQAILGASRGESREYTLPNGRTQKVSVVE 157 >gi|46198988|ref|YP_004655.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus thermophilus HB27] gi|109157536|pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein Of Thermus Thermophilus gi|109157537|pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein Of Thermus Thermophilus gi|18034647|gb|AAL57612.1|AF456235_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus] gi|46196612|gb|AAS81028.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus thermophilus HB27] Length = 156 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 92/157 (58%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V + Sbjct: 60 ARIDSLEDILSRAVILEE--GSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G++ + ++ + Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAI 154 >gi|90109221|pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1 gi|90109222|pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1 gi|90109223|pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1 gi|18034643|gb|AAL57610.1|AF456233_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus aquaticus] Length = 157 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 90/157 (57%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ ++L ++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V + Sbjct: 60 ARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLENPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G+K + ++ + Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAI 154 >gi|225420455|ref|ZP_03762758.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme DSM 15981] gi|225040905|gb|EEG51151.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 + +E+ R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ LE +I A+ Sbjct: 1 MMEEIEHRKLVVRRECLEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYLERMIKTAK 60 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 +I S D + TV + + + Y+IV + GL+SI SP+ +AL+G + Sbjct: 61 II-SDKSSSDEVGLNDTVEVYIPEDDETERYKIVTTVRGNSLKGLISIDSPLGKALLGHK 119 Query: 135 LGDIISVNAPGG-EKTYEILQV 155 G+ + V EI + Sbjct: 120 AGETVYVKVDERFGYEVEIRSI 141 >gi|46445720|ref|YP_007085.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399361|emb|CAF22810.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 723 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 5/152 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++I T +G+ KIQ +R E + I ARA GDL EN+E++ A+E + + Sbjct: 570 EEIWTTEEGYLKIQDRIRQIGTVEVVENAREIEAARALGDLRENSEFKFAQERRARLQSE 629 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L RA +I + D + G+ + L++ G K Y I+G +AD + ++S+ Sbjct: 630 LKTLSEQFGRARIITPDDILTDEVGIGSVIDLIDSQ-GQKIRYSILGPWDADPEKNILSL 688 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +S A+A+IGK++GD ++T+++L Sbjct: 689 NSKFAQAMIGKKIGDQFQFK----DETFKVLS 716 >gi|297620326|ref|YP_003708463.1| transcription elongation factor greA [Waddlia chondrophila WSU 86-1044] gi|297375627|gb|ADI37457.1| transcription elongation factor greA [Waddlia chondrophila WSU 86-1044] Length = 721 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G+ K Q+ ++ E K + EAR++GDL EN+EY+ A E ++ + M L Sbjct: 573 TEEGYRKTQERVKRIATVEMVENAKEVEEARSHGDLRENSEYKFACEKRSRLQSEMKMLS 632 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 ++ A V+ + G V + E+ SG K+ + I+G EAD+ +G++S S IA Sbjct: 633 KQLSAARVLTPEDVDSSIAGVGCIVEV-EEPSGAKEQFTILGPWEADIDNGIISYQSQIA 691 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ G ++GD + G L+ ++ Sbjct: 692 QAMSGHKIGDSFTFK--DGHYKITALKSVF 719 >gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola DSM 20162] gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola DSM 20162] Length = 164 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 3/143 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 + + ++++ EL RP I I+E R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLPPESHERLKNELDALIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123 L+ ++ A+V + T SG + + + D + + I +E D + + S + Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGAQDGELEVYSPN 126 Query: 124 SPIARALIGKELGDIISVNAPGG 146 SP+ ALI ++G+ P G Sbjct: 127 SPLGAALIDAKVGESREYTIPSG 149 >gi|55981011|ref|YP_144308.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus HB8] gi|83754983|pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1. gi|83754984|pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1. gi|83754985|pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1. gi|83754986|pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1. gi|313754180|pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754181|pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754182|pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1) gi|313754204|pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|313754205|pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|313754206|pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2) gi|55772424|dbj|BAD70865.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus thermophilus HB8] Length = 156 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 91/157 (57%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V + Sbjct: 60 ARIDSLEDILSRAVILEE--GSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G + + ++ + Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGRREFRVVAI 154 >gi|153813303|ref|ZP_01965971.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174] gi|149830593|gb|EDM85684.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ LE ++ A V+D S+ Sbjct: 61 HRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYLERMLKTATVVDDSS 120 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 S D + V + + G+ + Y++V + VSI SPI +AL G +GD + Sbjct: 121 KS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESPIGKALKGHRVGDRVL 179 Query: 141 VNAPGGEKTY 150 VN Y Sbjct: 180 VNVNENVSYY 189 >gi|302338551|ref|YP_003803757.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM 11293] gi|301635736|gb|ADK81163.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM 11293] Length = 894 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 71/150 (47%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT K F+ +Q+L+ E K I A GDL ENAEY+A KE Q L +M +L Sbjct: 740 VTRKTFEAKKQQLQHINDVEMKETSKEIGAAIELGDLKENAEYKAGKEKQELLNIQMQKL 799 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ I RA + D + +I+F V+L ++ K+ Y G E++ ++S SP Sbjct: 800 KDEIDRAVIFDPADRDTSKISFATKVTLENLDTKKKETYSFFGPWESNPNENIISYLSPF 859 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 L + G+ + Y +L++ Sbjct: 860 GGKLWNHKEGEDLEFEINERVYHYSVLKIE 889 >gi|119025670|ref|YP_909515.1| transcription elongation factor GreA [Bifidobacterium adolescentis ATCC 15703] gi|154487515|ref|ZP_02028922.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis L2-32] gi|118765254|dbj|BAF39433.1| transcription elongation factor GreA [Bifidobacterium adolescentis ATCC 15703] gi|154084033|gb|EDN83078.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis L2-32] Length = 159 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 10/159 (6%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ I +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q + Sbjct: 1 MAEEKTILLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N+GR+ EL + A+++ + G+ V+L + +G + Y + G ++ + + Sbjct: 61 NQGRIDELTVKLRNAKILTAPK--AGEVGDGSLVTL--EVNGREMVYVL-GTRDLSIATD 115 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 +S SPI A+ G GD ++ AP G E + I + Sbjct: 116 YSIISPESPIGAAINGAHAGDTVTYTAPNGREISVTIKE 154 >gi|227497804|ref|ZP_03927989.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM 15434] gi|226832764|gb|EEH65147.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM 15434] Length = 165 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 8/155 (5%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D++ EL RQ+ +R I + + AR GDL ENA Y AA+E LNE R+A+ Sbjct: 13 WLTKDAYDRLTAELARRQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEARIAQ 72 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSI 122 L ++ +AE+ +++ T + ++ + + G + ADV G + S Sbjct: 73 LTELLEKAEIGEVADDGTVSAGTIVTAKI----GAKEQVFALGGQEITADVPEGVKVFSP 128 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 +P+ +AL+G + G+ +S AP G E EI+ V Sbjct: 129 DAPLGKALMGHKAGETVSYQAPNGKEIKAEIIDVK 163 >gi|323359453|ref|YP_004225849.1| transcription elongation factor [Microbacterium testaceum StLB037] gi|323275824|dbj|BAJ75969.1| transcription elongation factor [Microbacterium testaceum StLB037] Length = 163 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ QEL R I K I AR GDL EN Y AAK+ Q E R+ L Sbjct: 10 LTQDAYDRLAQELEHLSTTGREEIAKRIEIAREEGDLKENGGYHAAKDEQGKQEARIRTL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ A+V + + S + G V+ V G++K + A+ + + S +SP+ Sbjct: 70 QQLLKDAKVGE-APESHGVVESGTVVTAV-VAGGEEKFLLGNREIAANSELDVYSEASPL 127 Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156 A+IG + G+ S AP G E + EI++V Sbjct: 128 GAAIIGLKEGEKGSYTAPNGKEISVEIVKVE 158 >gi|300087971|ref|YP_003758493.1| GreA/GreB family elongation factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527704|gb|ADJ26172.1| GreA/GreB family elongation factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 271 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 84/151 (55%), Gaps = 2/151 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T + ++ ++ + +R +++ I +A A DL ENA Y AA+E + +G++AEL Sbjct: 122 ITLEQKKDMEVDVARLKD-KRVEVVEEIKKAAADKDLKENAPYHAAREEKAKLDGKIAEL 180 Query: 67 ENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E ++ +A V + SG + + G V++ SG +++V +E D ++G +S +SP Sbjct: 181 EMMLKQAVVQEKHMTSGKKKVEVGRQVTVTNLASGQVTKFKLVIAREVDPKNGCISPASP 240 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 I +A++G+ +GD + V AP Y I + Sbjct: 241 IGKAIMGRYIGDTVEVVAPACTNRYCINSIE 271 >gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4] gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4] Length = 165 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +D++ E RP I I+E R GDL ENA Y AA+E Q E R+ Sbjct: 9 WLTQDSYDRLMAEKEALIA-NRPVIAAEINERREEGDLKENAGYHAAREQQGQEEARIRT 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 +++++ A+V + T SG + + N K+ + I E + L S Sbjct: 68 IDDLLANAQVGETPTESGVALIGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLEIYSPD 127 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 SP+ +A++G + G+ AP G+K Sbjct: 128 SPLGKAVLGAKNGETREYTAPNGKK 152 >gi|218296574|ref|ZP_03497302.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23] gi|218243116|gb|EED09648.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23] Length = 156 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 90/157 (57%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ ++L ++E K + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V + Sbjct: 60 ARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLETPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IS SP+ +AL+G +GD++S++ P G+K + ++ V Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAV 154 >gi|25027606|ref|NP_737660.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] gi|23492888|dbj|BAC17860.1| putative transcription elongation factor GreA [Corynebacterium efficiens YS-314] Length = 217 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 47 ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 105 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ ++ ++ A + G + + DK+ + I A + Sbjct: 106 RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 165 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 S SP+ A++G G+ P G + I+ Sbjct: 166 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 201 >gi|313679936|ref|YP_004057675.1| grea/greb family elongation factor [Oceanithermus profundus DSM 14977] gi|313152651|gb|ADR36502.1| GreA/GreB family elongation factor [Oceanithermus profundus DSM 14977] Length = 156 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 5/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++Q EL ++ + + E + E++ + AK + E Sbjct: 1 MAREVKLTKAGYERLQLELAEEKK-RLEEATRILQEQMESFEDYEDSGLEEAKREKAQIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I+ RA +I+ + GD++ G+ V + ++ +G+ QIV EA V + Sbjct: 60 ARVDALEDILHRAVIIESAE--GDKVTLGSVVVVQDEKTGESLTLQIVAPAEATVLEEPM 117 Query: 121 --SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S SP+ +AL+G++ GD + V+ P G++ Y IL V Sbjct: 118 RVSDESPLGKALLGRKEGDKVRVDTPSGKRRYRILSV 154 >gi|260906828|ref|ZP_05915150.1| GreA/GreB family elongation factor [Brevibacterium linens BL2] Length = 164 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 7/157 (4%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T + FD++ QEL R I + I AR GDL EN Y AA+E Q E R Sbjct: 8 EETWLTQEAFDRLSQELEHLSGPGRAEIAEKIEAARDEGDLKENGGYHAAREEQGKQEAR 67 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLV 120 + +LE ++ A+V S G ++ G+ V+ + + ++G +E D + Sbjct: 68 IRQLELLLQSAKVG-SSDSDGKTVSPGSVVTAKVAGNDMR---FLLGSREIAGDSDIDVF 123 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S SP+ A++G +G S AP G E E+ + Sbjct: 124 SEKSPLGAAVLGVAVGGKTSYEAPNGKEIKVEVKGIE 160 >gi|258614382|ref|ZP_05712152.1| transcription elongation factor GreA [Enterococcus faecium DO] Length = 130 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%) Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120 Query: 120 VSISSPIARA 129 +S SPIA+A Sbjct: 121 ISNDSPIAQA 130 >gi|170782755|ref|YP_001711089.1| putative transcription elongation factor [Clavibacter michiganensis subsp. sepedonicus] gi|169157325|emb|CAQ02512.1| putative transcription elongation factor [Clavibacter michiganensis subsp. sepedonicus] Length = 162 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M + +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q Sbjct: 1 MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116 E R+ +L ++ AEV D + S + G V+ +GD+ + + + A D Sbjct: 61 KIEARIRQLTQLLRTAEVGD-APESHGVVEPGTVVT--ALIAGDETKFLLGNREIAGDSD 117 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + S SP+ A+IG E+G + AP G E EI V Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158 >gi|313201038|ref|YP_004039696.1| grea/greb family elongation factor [Methylovorus sp. MP688] gi|312440354|gb|ADQ84460.1| GreA/GreB family elongation factor [Methylovorus sp. MP688] Length = 167 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G +QQ+++ ++E LS + A++ ++ + Sbjct: 29 YVTPHGLQLLQQDMQALEKER--------------ATLSARKDDPTAQQRLSMINRDLRY 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + A ++D + S +++ FGA VE + G ++ +QIVG+ EAD+ VS SP Sbjct: 75 LEARLEAAIIVDPTQQSREQVLFGA-HVHVEDDEGQRQVFQIVGEDEADIAQNKVSWISP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALIG + G++++ P G EI+ + + Sbjct: 134 LARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165 >gi|223940861|ref|ZP_03632689.1| GreA/GreB family elongation factor [bacterium Ellin514] gi|223890471|gb|EEF57004.1| GreA/GreB family elongation factor [bacterium Ellin514] Length = 606 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 82/145 (56%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 ++ + E Q++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE+ + Sbjct: 457 LERRKNEYAELVQKKIPANSKEIAIARSYGDLRENHEYKAAKEMQKILMRRKAELESELV 516 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 RA D D ++ G V + + NS +++ I+G ++D + ++S +P+A++L+ Sbjct: 517 RARGTDYLNPKTDAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLAPLAQSLL 576 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 ++ G+ + G ++ + I ++ Sbjct: 577 NRKPGEEVDYEMDGQKRRFRIDEIT 601 >gi|212716148|ref|ZP_03324276.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM 16992] gi|225351851|ref|ZP_03742874.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212661515|gb|EEB22090.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM 16992] gi|225157098|gb|EEG70437.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 159 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 10/159 (6%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ + +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q + Sbjct: 1 MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 N+GR+ EL + A+++ + G+ V+L +G + Y + G ++ + + Sbjct: 61 NQGRIEELTVKLRNAKILTAPK--AGEVGDGSLVTL--DVNGREMVYVL-GTRDLSIATD 115 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 +S SPI A+ G GD +S AP G E + I + Sbjct: 116 YSIISPESPIGAAINGAHEGDTVSYTAPNGREISVTIKE 154 >gi|171743230|ref|ZP_02919037.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC 27678] gi|283455792|ref|YP_003360356.1| transcription elongation factor GreA [Bifidobacterium dentium Bd1] gi|306823073|ref|ZP_07456449.1| possible transcription elongation factor GreA [Bifidobacterium dentium ATCC 27679] gi|309801121|ref|ZP_07695250.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|171278844|gb|EDT46505.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC 27678] gi|283102426|gb|ADB09532.1| Transcription elongation factor GreA [Bifidobacterium dentium Bd1] gi|304553705|gb|EFM41616.1| possible transcription elongation factor GreA [Bifidobacterium dentium ATCC 27679] gi|308222010|gb|EFO78293.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 159 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ + +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q + Sbjct: 1 MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQS 117 N+GR+ EL + A+++ + G+ V+L + +G + Y + Sbjct: 61 NQGRIDELTVKLRNAKILTAPKE--GEVGDGSVVTL--ELNGRELVYVLGTRDLSIATDY 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 ++S SPI A+ G GD +S AP G E + I Sbjct: 117 DIISPESPIGAAINGAHAGDTVSYTAPNGREISVTI 152 >gi|320450007|ref|YP_004202103.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus scotoductus SA-01] gi|320150176|gb|ADW21554.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus scotoductus SA-01] Length = 156 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 88/158 (55%), Gaps = 5/158 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ Q+L ++E + + E D +++ +AAK+ + E Sbjct: 1 MAREVKLTKAGYERLMQQLLQ-ERERLQEATRILQELMESSDDYDDSGLEAAKQEKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ LE+I++RA +I+ +T + I G+ V L + +G++ Q+V EA V + Sbjct: 60 ARIDSLEDILSRAVIIEGAT--TEVIGLGSVVELEDPVTGERLEVQVVSPAEASVLETPM 117 Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 IS SP+ +AL+G GD++S++ P G+K + ++ V Sbjct: 118 KISDASPMGKALLGHREGDVLSLDTPKGKKEFRVVSVR 155 >gi|13357864|ref|NP_078138.1| transcription elongation factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762258|ref|YP_001752386.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920165|ref|ZP_02691337.2| transcription elongation factor GreA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508821|ref|ZP_02958274.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701835|ref|ZP_02971503.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11132421|sp|Q9PQI7|GREA_UREPA RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|189042253|sp|B1AIU2|GREA_UREP2 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|11279752|pir||G82906 transcription elongation factor UU304 [imported] - Ureaplasma urealyticum gi|6899280|gb|AAF30713.1|AE002128_1 transcription elongation factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827835|gb|ACA33097.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902538|gb|EDT48827.1| transcription elongation factor GreA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675786|gb|EDT87691.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701123|gb|EDU19405.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 156 Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 73/134 (54%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRS 81 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 D ++ G+T+ + ++ +VG ++D + +SI +P+ +AL+ ++ G ++V+ Sbjct: 82 TDEVSIGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVH 141 Query: 143 APGGEKTYEILQVL 156 +I++++ Sbjct: 142 TLASPYKVKIIKII 155 >gi|19552211|ref|NP_600213.1| transcription elongation factor GreA [Corynebacterium glutamicum ATCC 13032] gi|62389876|ref|YP_225278.1| transcription elongation factor GreA [Corynebacterium glutamicum ATCC 13032] gi|21323753|dbj|BAB98379.1| Transcription elongation factor [Corynebacterium glutamicum ATCC 13032] gi|41325211|emb|CAF19692.1| Transcription elongation factor [Corynebacterium glutamicum ATCC 13032] Length = 174 Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ ++ ++ + + G + + DK+ + I A + Sbjct: 63 RIKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLET 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S SP+ A++G + GD AP G + ++ Sbjct: 123 YSEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158 >gi|134093324|ref|YP_001098399.1| putative transcription elongation factor GreA/GreB [Herminiimonas arsenicoxydans] gi|133737227|emb|CAL60270.1| putative transcription elongation factor GreB [Herminiimonas arsenicoxydans] Length = 193 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +Q EL+ E + ++ E SE + + +E E R+ Sbjct: 28 YITLAGYRHLQSELQRLMNEAQSAAVRE--ENPDNATFSEMSPERTVRE----IEQRIHY 81 Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ + AE++D +G+ +I FGA V+ SG++++ IVG E D +G +S S Sbjct: 82 LQARLEMAEIVDPGVHAGEEQIFFGANVTYQ-HESGEQQSVTIVGLDELDPANGRISWLS 140 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+A++L+G GD +++ +P G++ ++L V + Sbjct: 141 PVAQSLLGAYAGDEVTLESPAGKEVLKVLAVHY 173 >gi|296118180|ref|ZP_06836761.1| transcription elongation factor GreA [Corynebacterium ammoniagenes DSM 20306] gi|295968738|gb|EFG81982.1| transcription elongation factor GreA [Corynebacterium ammoniagenes DSM 20306] Length = 172 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAEQKQYITPETKAKLEAELQMLID-RRPEVAAEINERREEGDLKENAGYDAAREMQDQE 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E R+ ++ ++ A G + DK+ + I A L Sbjct: 60 EARIKQISEVLANATTEREGIQDGVAAIGSVVHVYYNGDEEDKETFLIGTRAAASDNKDL 119 Query: 120 --VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 S SP+ A++G + G+ AP G+ + I+ Sbjct: 120 ETYSEQSPLGAAILGAQEGETREYTAPNGKALSVTIIS 157 >gi|284989519|ref|YP_003408073.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM 43160] gi|284062764|gb|ADB73702.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM 43160] Length = 167 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 + +T + D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+ Sbjct: 12 VWLTQEAHDRLRAELDQLVA-GRPAMAAEINARREEGDLRENGGYHAAKDEQGKQEARIR 70 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSI 122 +LE+++ +A V D T + A G +++ + D + + ++G +E +GL S Sbjct: 71 QLEDLLRKARVGDAPTTATHA-ATGTVITIRFRGEDDTEKF-LLGSREIAGTTGLQVYSP 128 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 S + A++G E G ++ AP G + T +++ V Sbjct: 129 ESALGSAILGAEPGTTVTYQAPNGRDITVDVVAVE 163 >gi|145295136|ref|YP_001137957.1| transcription elongation factor GreA [Corynebacterium glutamicum R] gi|140845056|dbj|BAF54055.1| hypothetical protein [Corynebacterium glutamicum R] Length = 174 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ ++ ++ + + G + + DK+ + I A + Sbjct: 63 RIKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLET 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 S SP+ A++G + GD AP G + ++ Sbjct: 123 YSEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158 >gi|315606055|ref|ZP_07881086.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 180 str. F0310] gi|315312337|gb|EFU60423.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 180 str. F0310] Length = 159 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 + S +P+ A+IG + GD +S AP G EIL Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153 >gi|88856089|ref|ZP_01130750.1| transcription elongation factor [marine actinobacterium PHSC20C1] gi|88814657|gb|EAR24518.1| transcription elongation factor [marine actinobacterium PHSC20C1] Length = 163 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 8/154 (5%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + FD+ EL E R I K I AR GDL EN Y AAKE Q E R+ Sbjct: 9 WLTQEAFDRRTAELEQLTGEARYDIAKKIEAAREEGDLKENGGYHAAKEEQGKIEARIRV 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DVQSGLVSI 122 L ++ A V D+ G + G V+ +++ ++G +E + S Sbjct: 69 LTELLRHAVVGDVQDADG-LVEPGILVTAKIMG---EESVFLLGSREIVADGSDLDVYSE 124 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155 SP+ A+ G ++G + AP G + T EIL+V Sbjct: 125 KSPLGLAINGLKVGSSATYTAPNGKDITVEILKV 158 >gi|154507712|ref|ZP_02043354.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC 17982] gi|153797346|gb|EDN79766.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC 17982] Length = 178 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 20 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 79 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 80 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 135 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 + S +P+ A+IG + GD +S AP G EIL Sbjct: 136 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 172 >gi|328950624|ref|YP_004367959.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis DSM 14884] gi|328450948|gb|AEB11849.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis DSM 14884] Length = 156 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T G+++++ +L + + + + E + E++ + AK + E Sbjct: 1 MAREIKLTKAGYERLKAQLEQ-EYQRLAEATRILQEQMESFEDYEDSGLEDAKREKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119 R+ LE+ ++RA +++ S G +A G+ + L + SG+ QIV EA V Sbjct: 60 ARIDSLEDTLSRAVILEDSQG-GQVVALGSRLVLQDAESGEGYEIQIVAPAEASVLEEPL 118 Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +S SP+ AL+G+ G+ + V P G + Y I+ V Sbjct: 119 KISDESPVGSALLGRREGESVRVETPRGIREYRIISV 155 >gi|289168331|ref|YP_003446600.1| transcription elongation factor related to GreA [Streptococcus mitis B6] gi|288907898|emb|CBJ22738.1| transcription elongation factor related to GreA [Streptococcus mitis B6] Length = 150 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120 Query: 120 VSISSPIARALIGKE 134 VS SPI +AL+ ++ Sbjct: 121 VSNESPIGQALLARK 135 >gi|166153878|gb|ABY82795.1| transcription elongation factor [Listonella anguillarum] Length = 126 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 93/127 (73%), Gaps = 2/127 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K+P+T +G +++ +E R + RP+I +AI+ AR GDL ENAEY AA+E Q + E Sbjct: 1 MEKVPMTVRG-EQLLREELDRLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59 Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 ++ ++E ++ A+VIDI+ M + ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG + Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119 Query: 121 SISSPIA 127 S+SSPIA Sbjct: 120 SVSSPIA 126 >gi|269219222|ref|ZP_06163076.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211369|gb|EEZ77709.1| transcription elongation factor GreA [Actinomyces sp. oral taxon 848 str. F0332] Length = 161 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + ++ + +++++ EL R I + I AR GDL EN YQAA+E Q+ EG Sbjct: 5 SKRAWLSPESYERLRAELEEMTTVRRAEIARKIEAARNEGDLRENGGYQAAREEQSKLEG 64 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+AEL +++ A V + + + T + G+++ + I + +D + Sbjct: 65 RIAELTHLLENATVSEPPAATEVQAGVIVTAKIA----GEEERFLIGSREASDHLDIEIY 120 Query: 122 ISS-PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 S P+ +A++G + G+ P G K + EI+++ Sbjct: 121 PESAPLGKAILGLKEGESTKFATPTGRKISVEIVKIE 157 >gi|253998935|ref|YP_003050998.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|253985614|gb|ACT50471.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] Length = 167 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G +QQ+++ ++E LS + A++ ++ + Sbjct: 29 YVTPHGLYLLQQDMQALEKER--------------ATLSARKDDPTAQQRLSMINRDLRY 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + A ++D + S +++ FGA VE + G ++ +QIVG+ EAD+ VS SP Sbjct: 75 LEARLETAIIVDPTQQSREQVLFGA-HVHVEDDEGQRQVFQIVGEDEADIAQNKVSWISP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +ARALIG + G++++ P G EI+ + + Sbjct: 134 LARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165 >gi|148273428|ref|YP_001222989.1| transcription elongation factor GreA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831358|emb|CAN02314.1| transcription elongation factor GreA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 162 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 8/161 (4%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M + +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q Sbjct: 1 MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116 E R+ +L ++ AE+ D + S + G V+ +GD+ + + + A D Sbjct: 61 KIEARIRQLTQLLRTAELGD-APESHGVVEPGTVVT--ALIAGDETKFLLGNREIAGDSD 117 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + S SP+ A+IG E+G + AP G E EI V Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158 >gi|108761121|ref|YP_634997.1| GreA/GreB family transcription elongation factor [Myxococcus xanthus DK 1622] gi|108465001|gb|ABF90186.1| transcription elongation factor, GreA/GreB family [Myxococcus xanthus DK 1622] Length = 167 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 20/157 (12%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA--AKELQNLNE 60 +K +T +G+ +Q+EL A A G + E+ A + E Sbjct: 26 EKRYITPEGYRALQEEL-----------------AAAQGPDPKAGEFTELEAGVRRKERE 68 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ EL ++ V++ R+ FGA V L +++ G + Y+IVG E+DV++G + Sbjct: 69 RRVQELAAVLEDVRVVEPDASQAGRVFFGAWVELEDEDGGPVR-YRIVGPDESDVKAGRL 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ SP+ARAL+GKE+G+ + V+ P G Y + V + Sbjct: 128 SVESPLARALLGKEVGESVVVDRPRGPVEYTVTAVDY 164 >gi|294786772|ref|ZP_06752026.1| transcription elongation factor GreA [Parascardovia denticolens F0305] gi|315226395|ref|ZP_07868183.1| transcription elongation factor GreA [Parascardovia denticolens DSM 10105] gi|294485605|gb|EFG33239.1| transcription elongation factor GreA [Parascardovia denticolens F0305] gi|315120527|gb|EFT83659.1| transcription elongation factor GreA [Parascardovia denticolens DSM 10105] Length = 158 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 7/157 (4%) Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M ++ +T + +DK+++EL +R+ + R I I+ ARA GDLSEN YQAA+E Q Sbjct: 1 MAEEKVYLLTQEAYDKLKEELTYREGDLREEIKAKIAAARAEGDLSENGGYQAAREEQGK 60 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117 NEGR+ EL + ++++ ++ G+ V L + +G++ Y + A Sbjct: 61 NEGRIQELTVKLRDSQILKAPK--AGKVGPGSLVVL--EIAGNEMTYVLGSHDLAVATDF 116 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 ++S SPI A+ GK+ GD ++ AP G + I++ Sbjct: 117 DIISPESPIGAAINGKKKGDTVTYAAPNGREITVIIK 153 >gi|238062787|ref|ZP_04607496.1| transcription elongation factor greA [Micromonospora sp. ATCC 39149] gi|237884598|gb|EEP73426.1| transcription elongation factor greA [Micromonospora sp. ATCC 39149] Length = 166 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ Sbjct: 12 WLSQDAHDRLQAELDELIA-NRPAIAAEINARREEGDLRENGGYHAAREEQGKQEGRILY 70 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123 L+ ++ A+V + S D ++ G V++ + D ++G +E + L S Sbjct: 71 LKELLRTAQVGEAP--SADTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTELTVYSPE 128 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEIL 153 S + ++++G G ++ AP G + ++ Sbjct: 129 SALGKSILGTRPGQTVTYTAPSGADIKVTVV 159 >gi|227504093|ref|ZP_03934142.1| transcription elongation factor GreA [Corynebacterium striatum ATCC 6940] gi|227199327|gb|EEI79375.1| transcription elongation factor GreA [Corynebacterium striatum ATCC 6940] Length = 173 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAEQQKQYITPETKAKLEAELQALIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ ++ A + G + DK+ + I A Sbjct: 60 EEARIKQISEVLANATTERTAIQEGVAAIGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147 L S SP+ ALIG G+ AP G+ Sbjct: 120 LETYSEQSPLGAALIGAHEGETREYTAPNGK 150 >gi|187735038|ref|YP_001877150.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC BAA-835] gi|187425090|gb|ACD04369.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC BAA-835] Length = 615 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I V+ + + ++EL + P + +RA GDL EN YQ AKE++ + R Sbjct: 457 EPIFVSWESLEARKKELEELVNVKIPENLHNKKISRAEGDLRENGGYQDAKEVEKVLNRR 516 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 AELE+ + A D + R A G V+L N G+ Y I+G + + + +VS Sbjct: 517 RAELEHALALARGTDFAVTDTSRAAMGTKVTLQPLNGGEPVVYTILGAWDTNPEKHIVSY 576 Query: 123 SSPIARALIGKELGDIISVNAPGGEKT--YEILQVL 156 S + + L GK +GD + + G+K Y I ++ Sbjct: 577 LSQVGKELTGKSVGDQVKIVPMDGDKKKVYTITKIE 612 >gi|293189385|ref|ZP_06608108.1| transcription elongation factor GreA [Actinomyces odontolyticus F0309] gi|292821848|gb|EFF80784.1| transcription elongation factor GreA [Actinomyces odontolyticus F0309] Length = 159 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE Sbjct: 1 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118 R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+ Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 116 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 + S +P+ A+IG + GD +S AP G EIL Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153 >gi|15618651|ref|NP_224937.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae CWL029] gi|15836273|ref|NP_300797.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae J138] gi|16752300|ref|NP_444557.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae AR39] gi|33242100|ref|NP_877041.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila pneumoniae TW-183] gi|7531133|sp|Q9Z7G4|GREA_CHLPN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|4377048|gb|AAD18880.1| Transcription Elongation Factor [Chlamydophila pneumoniae CWL029] gi|7188943|gb|AAF37901.1| transcription elongation protein, GreA/GreB family [Chlamydophila pneumoniae AR39] gi|8979113|dbj|BAA98948.1| transcription elongation factor [Chlamydophila pneumoniae J138] gi|33236610|gb|AAP98698.1| GreA [Chlamydophila pneumoniae TW-183] Length = 722 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 5/149 (3%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA ++ + D++ G V+L ++G+ Y I+G +AD S ++S+ S +A Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++GK+L D++ + K Y+I ++ Sbjct: 690 QNMLGKKLNDVVILQG----KEYKISRIQ 714 >gi|269302530|gb|ACZ32630.1| transcription elongation factor GreA [Chlamydophila pneumoniae LPCoLN] Length = 722 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 5/149 (3%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA ++ + D++ G V+L ++G+ Y I+G +AD S ++S+ S +A Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++GK+L D++ + K Y+I ++ Sbjct: 690 QNMLGKKLNDVVILQG----KEYKISRIQ 714 >gi|171920968|ref|ZP_02932102.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179173|ref|ZP_02555812.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024325|ref|ZP_02570283.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518634|ref|ZP_02557002.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524482|ref|ZP_02558390.2| transcription elongation factor GreA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867660|ref|ZP_03079662.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273725|ref|ZP_03206260.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551554|ref|ZP_03772500.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902992|gb|EDT49281.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208908|gb|EDU05951.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019005|gb|EDU57045.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997849|gb|EDU66946.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659661|gb|EDX53041.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660717|gb|EDX53972.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249753|gb|EDY74534.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379369|gb|EEH01734.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 156 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 73/134 (54%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 82 TDEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141 Query: 143 APGGEKTYEILQVL 156 +I++++ Sbjct: 142 TLASPYKVKIIKII 155 >gi|153004515|ref|YP_001378840.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] gi|152028088|gb|ABS25856.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] Length = 168 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 16/151 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G ++QEL + R + ARA E R A Sbjct: 30 YVTPEGQAALRQELEALRD-ARAEAARLPEHARA--------------ARLAELERRAAL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E + V+ + ++ FG V + +++ G ++IVG EAD + G+VS+ SP Sbjct: 75 VEGTLAALTVLGPESALEGKVGFGTWVVVEDED-GRALTWRIVGPDEADPRRGMVSVHSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARAL+G E GD + V P G + Y +++V Sbjct: 134 VARALLGHEAGDDVEVELPAGRRGYSVIEVR 164 >gi|50955274|ref|YP_062562.1| transcription elongation factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951756|gb|AAT89457.1| transcription elongation factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 163 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 5/152 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +D++ EL R I K I AR GDL EN Y AAK+ Q E R+ +L Sbjct: 10 LTQDAYDRLAAELEELSVNGRAEIAKRIEAAREEGDLKENGGYHAAKDEQGKIEARIVQL 69 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSP 125 ++ A V + S + G V+ +GD+ + I + A + + S SP Sbjct: 70 TALLRSATVG-AAPESHGIVEPGTVVT--ATIAGDESAFLIGNREIATGTELPVYSEQSP 126 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + A++G ++GD AP G + I +V Sbjct: 127 LGAAILGLKIGDTTEYTAPNGRQIAVRITKVE 158 >gi|225550671|ref|ZP_03771620.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379825|gb|EEH02187.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 73/134 (54%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 82 TDEVSIGSTIEIYNYQKDRKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141 Query: 143 APGGEKTYEILQVL 156 +I++++ Sbjct: 142 TLASPYKVKIIKII 155 >gi|300781602|ref|ZP_07091456.1| transcription elongation factor GreA [Corynebacterium genitalium ATCC 33030] gi|300533309|gb|EFK54370.1| transcription elongation factor GreA [Corynebacterium genitalium ATCC 33030] Length = 174 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 8/158 (5%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D + +T + K++ EL+ RP I I+E R GDL ENA Y AA+E Q+ Sbjct: 1 MADSQQQYITPEMKAKLEAELQQLID-NRPAIAAEINERREEGDLKENAGYDAAREQQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117 E R+ ++ ++ + + G + + DK+ + I G + A + Sbjct: 60 EEARIKQISELLANSTTERTGVVEGMAVVGSVVHVYYNGDENDKETFLI-GTRAASTDNK 118 Query: 118 --GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 S SP+ A++G G+ + AP G E + I Sbjct: 119 DLETYSEQSPLGAAVLGATEGETRTYTAPNGREISVTI 156 >gi|197122163|ref|YP_002134114.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] gi|196172012|gb|ACG72985.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] Length = 169 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +++ L + GD + + + L + R+A Sbjct: 30 YVTPEGQAALREALARLR--------------ADRGDAARLPDAERPARL-GELDARIAA 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARAL+G+ GD++ VN PGGE ++ V Sbjct: 134 VARALLGRRAGDVVEVNRPGGEAELTVVAVR 164 >gi|297538325|ref|YP_003674094.1| GreA/GreB family elongation factor [Methylotenera sp. 301] gi|297257672|gb|ADI29517.1| GreA/GreB family elongation factor [Methylotenera sp. 301] Length = 165 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++Q + +Q+++ L + + A ++ + Sbjct: 29 YVTPFGLAQLQTQATALEQQQQA--------------LLPSKDDPATQQTLAPLRRDLRY 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + +ID +T D + FGATV++ ++ G+ + IVG+ EAD+ VS SP Sbjct: 75 LETRLENVILIDPTTQPKDTVLFGATVNVEDEE-GNPHQFTIVGEDEADIALNKVSWVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+ALIG ++G+ +S P G EIL + + Sbjct: 134 IAKALIGHKVGETVSWQRPAGNLNLEILAINY 165 >gi|297566645|ref|YP_003685617.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946] gi|296851094|gb|ADH64109.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946] Length = 158 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M +I +T G++++++EL ++ + + E D +++ + AK + E Sbjct: 1 MAREIRLTRDGYERLKRELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGL 119 R+ LE+ ++RA VI+ + G + GA V+L + G++ Q+V EA V Sbjct: 60 ARIDSLEDTLSRAVVIEGAQEKG-VVTLGAIVTLKAREGKGEQMEVQVVAPAEASVLENP 118 Query: 120 --VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+G++LG+ + + P G + +E++ V Sbjct: 119 MKISDESPMGKALLGRKLGETVHLETPKGHREFEVISVR 157 >gi|209554023|ref|YP_002284702.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238058241|sp|B5ZBB2|GREA_UREU1 RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|209541524|gb|ACI59753.1| transcription elongation factor GreA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 156 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 73/134 (54%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+ Sbjct: 82 TDEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141 Query: 143 APGGEKTYEILQVL 156 +I++++ Sbjct: 142 TLALPYKVKIIKII 155 >gi|149197307|ref|ZP_01874359.1| transcript cleavage factor/unknown domain fusion protein [Lentisphaera araneosa HTCC2155] gi|149139853|gb|EDM28254.1| transcript cleavage factor/unknown domain fusion protein [Lentisphaera araneosa HTCC2155] Length = 693 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 + + + +Q+E E P KAI+ AR +GDL EN E++AAK+ Q + R+ EL+ Sbjct: 537 SQRSYKALQEEHERLVNTEIPDNSKAIAAAREHGDLRENFEFRAAKDRQKYLQLRVGELD 596 Query: 68 NIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 ++ + D S +R+ A V++ + + Y IVG + D +S +P+ Sbjct: 597 AMLNKIGPTDFSEFKVKNRVIPAAKVTIKSPEA--ETTYSIVGMLDGDPDKNWLSFETPL 654 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A++++G ++GD S+ PGG+ EIL V Sbjct: 655 AKSMLGHQVGD--SIELPGGD-EAEILAVE 681 >gi|227832751|ref|YP_002834458.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC 700975] gi|262182759|ref|ZP_06042180.1| transcription elongation factor GreA [Corynebacterium aurimucosum ATCC 700975] gi|227453767|gb|ACP32520.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC 700975] Length = 173 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 5/151 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAEQQKQYITPETKAKLEAELQALIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ ++ + + G + D++ + I A Sbjct: 60 EEARIKQISEVLANSTTERTAVQEGVAHIGSVVHVYYNGDEEDRETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147 L S SP+ AL+G G+ AP G+ Sbjct: 120 LETYSEQSPLGAALLGAAEGETREYTAPNGK 150 >gi|328948722|ref|YP_004366059.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Treponema succinifaciens DSM 2489] gi|328449046|gb|AEB14762.1| Transcription elongation factor, GreA/GreB, N-terminal protein [Treponema succinifaciens DSM 2489] Length = 914 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 73/137 (53%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 ++ + P++ I EA+ GDL ENAEY AAKE Q+ ++++L+ ++RA V D + Sbjct: 774 EDIEKVQLPKVAAEIGEAKEKGDLKENAEYIAAKEAQHRLNVQLSKLKEELSRAVVFDPT 833 Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 T + ++FG V+L ++ Y I+G E++V G++S SP+ L+ + G+ Sbjct: 834 TATTSLVSFGTKVTLHNNLENNEVVYTILGPWESNVDEGIISYLSPLGNNLLDMKNGEQR 893 Query: 140 SVNAPGGEKTYEILQVL 156 + + Y + + Sbjct: 894 AFTINDHKYDYTVKSIE 910 >gi|182412163|ref|YP_001817229.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177839377|gb|ACB73629.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 166 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++ +EL + ERP + A ++ AK + R Sbjct: 28 KRYLTEAGAERLHEELNRLRTVERPALAGAAAD-------------LDAKRELRKLDERA 74 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL+ I+ AE+I + FGA V++ E++ G Y+IVG E + +G +S Sbjct: 75 RELQQILATAEIISSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGIDETEFYTGGISFQ 133 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+A+AL+G +GD I +P G + EI + Sbjct: 134 SPLAQALLGASVGDRIQFQSPAGPRQLEIQLIE 166 >gi|284449158|dbj|BAI67350.1| transcription elongation factor [Lactobacillus fermentum] Length = 303 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 9/139 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 ++ KI +T G+ I++++ +Q +RP +I + AR GDLSEN EY AK Sbjct: 11 IMAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLIARLKAARVLGDLSENTEYSTAKRELR 69 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEAD 114 E + L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A Sbjct: 70 HLESCLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRYQAEQAS 127 Query: 115 VQSGLVSISSPIARALIGK 133 + +++ SP+ AL GK Sbjct: 128 LTEEVLAFDSPLGLALKGK 146 >gi|196232168|ref|ZP_03131023.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] gi|196223890|gb|EDY18405.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] Length = 169 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T G +++Q+EL A L E E + +++ RM L Sbjct: 32 MTVDGAERLQKELAVL--------------ADQKAQLEETGEGEISRDELRRVTSRMQAL 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + AEVI IS GD + FG V++ + G + Y+IVG E D+++G +S SP+ Sbjct: 78 SQRLADAEVIAISESRGDEVRFGMFVTIRDAG-GVEDEYRIVGVDEVDLEAGWISWLSPL 136 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+A++G+++GD++ AP GEK I+ V Sbjct: 137 AQAIVGRKIGDVVQFQAPAGEKKLHIVAVR 166 >gi|281356514|ref|ZP_06243006.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC BAA-548] gi|281317206|gb|EFB01228.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC BAA-548] Length = 698 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 ++ EL + P +A+ ARA+GD EN+E+ AAKE +N R ELE +T Sbjct: 546 HKRLMAELDDIINVQVPENREALKVARAHGDFRENSEFDAAKERRNFLSRRRGELERELT 605 Query: 72 RAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 R + I + ++ D G+ + L + +G+K+ YQ++G + D + +S + + +A+ Sbjct: 606 RIQPISLKSVRVEDSAVIGSEIELQD-ENGEKEVYQLLGAWDGDPERRFLSYRTRLGKAV 664 Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156 + +++G S G + Y+++ V Sbjct: 665 LNRKVGSEFS----DGSRQYKLIAVR 686 >gi|259506992|ref|ZP_05749892.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] gi|259165444|gb|EEW49998.1| transcription elongation factor GreA [Corynebacterium efficiens YS-314] Length = 174 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 DK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E Sbjct: 4 ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ ++ ++ A + G + + DK+ + I A + Sbjct: 63 RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 S SP+ A++G G+ P G + I+ Sbjct: 123 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 158 >gi|289525679|emb|CBJ15160.1| Transcription elongation factor [Chlamydia trachomatis Sweden2] Length = 715 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEE 622 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ Sbjct: 623 IRVLSEEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSL 681 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++GK +G+ + G+K +I ++ Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711 >gi|15834629|ref|NP_296388.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Nigg] gi|270284795|ref|ZP_06194189.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Nigg] gi|270288825|ref|ZP_06195127.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia muridarum Weiss] gi|301336175|ref|ZP_07224377.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia muridarum MopnTet14] gi|14194799|sp|Q9PLU1|GREA_CHLMU RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|7190045|gb|AAF38898.1| transcription elongation protein, GreA/GreB family [Chlamydia muridarum Nigg] Length = 714 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + TS+ F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 562 NILWTTSESFTRMKAKLQSLIGKEMVDNAKEIEDARALGDLRENSEYKFALERRARLQEE 621 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I RA+++ + + + G V L + G++ Y I+G +A+ + ++S+ Sbjct: 622 IRVLSEEINRAKILTKDAVFTNSVGVGCKVVLED-EQGEEDCYTILGPWDANPEEKILSL 680 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++GK +G+ + G+K +I Q+ Sbjct: 681 KSKLAQEMVGKTVGESVLFQ---GKKH-KIKQIS 710 >gi|255507239|ref|ZP_05382878.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis D(s)2923] gi|296435247|gb|ADH17425.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis E/150] gi|296438966|gb|ADH21119.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis E/11023] Length = 715 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEE 622 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ Sbjct: 623 IRVLSEEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSL 681 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++GK +G+ + G+K +I ++ Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711 >gi|300858139|ref|YP_003783122.1| transcription elongation factor [Corynebacterium pseudotuberculosis FRC41] gi|300685593|gb|ADK28515.1| Transcription elongation factor [Corynebacterium pseudotuberculosis FRC41] gi|302205860|gb|ADL10202.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis C231] gi|302330418|gb|ADL20612.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis 1002] gi|308276095|gb|ADO25994.1| transcription elongation factor GreA [Corynebacterium pseudotuberculosis I19] Length = 173 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 6/158 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAENQKQYITPETKAKLEEELNALIAH-RPEVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ I+ + + + G + DK+ + I A Sbjct: 60 EEARIKQISEILANSTTERVGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE-KTYEIL 153 L S SP+ A+IG + G+ AP G+ T ++ Sbjct: 120 LETFSEQSPLGAAVIGAKEGETREYTAPNGKTITVTVV 157 >gi|15807365|ref|NP_296096.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6460189|gb|AAF11920.1|AE002068_3 transcription elongation factor [Deinococcus radiodurans R1] Length = 183 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWR--QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M +P+T +G ++Q L ++EE R+++ EA +E+ + AA+E Sbjct: 24 MTQPLPLTPEGLSRLQAALEREQARREEARRVVQEQMEANE----NESLDLAAAQETLGA 79 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ELE+ + RA V+ + R A G+ V+L+ G + +V EA G Sbjct: 80 VEARIEELEDQLARAVVLAPGAGNDGRAAVGSRVTLLNIGLGRELPLHLVSAAEAAAGPG 139 Query: 119 -----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 LVS SP+ RAL+G+ G+ +V+ + Y +L V Sbjct: 140 TSGVALVSTESPVGRALLGRRAGEEFTVDLGRTQAQYRVLMVE 182 >gi|220916942|ref|YP_002492246.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] gi|219954796|gb|ACL65180.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 168 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 16/151 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +++ L + E D + + + A L + R+A Sbjct: 30 YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPRL-ADLDARIAA 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARAL+G+ G+++ V+ PGGE ++ V Sbjct: 134 VARALLGRRAGEVVEVHRPGGEAELTVVAVR 164 >gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum SK141] gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium ATCC 33035] gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum SK141] gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium ATCC 33035] Length = 173 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 5/151 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAEQQKQYITPETKAKLEAELQELIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ ++ A + G + DK+ + I A Sbjct: 60 EEARIKQISEVLANATTERGAVQEGVAHTGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147 L S SP+ A++G + G+ AP G+ Sbjct: 120 LETYSEQSPLGAAILGAQEGETREYTAPNGK 150 >gi|166153977|ref|YP_001654095.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis 434/Bu] gi|166154852|ref|YP_001653107.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335174|ref|ZP_07223418.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis L2tet1] gi|165929965|emb|CAP03448.1| Transcription elongation factor [Chlamydia trachomatis 434/Bu] gi|165930840|emb|CAP06402.1| Transcription elongation factor [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 715 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++GK +G+ + G+K +I ++ Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEIS 711 >gi|86158541|ref|YP_465326.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85775052|gb|ABC81889.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 168 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 16/151 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +++ L + E D + + + A L + R+A Sbjct: 30 YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPRL-ADLDARVAA 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARAL+G+ GD++ V+ PGGE ++ V Sbjct: 134 VARALLGRRAGDVVEVHRPGGEAELTVVAVR 164 >gi|330881018|gb|EGH15167.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ + Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118 Query: 121 S 121 S Sbjct: 119 S 119 >gi|282889896|ref|ZP_06298434.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500219|gb|EFB42500.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 731 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + I T +G+ + Q+ +R E + I AR+ GDL EN+EY+ A E ++ +G Sbjct: 578 NTIWTTEEGYLQTQERIRQIGTTEVVENAREIEAARSLGDLRENSEYKFALEKRSRLQGE 637 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA +I + ++++ G+ V L + + Y I+G +AD + ++S Sbjct: 638 LKRLSEQLNRARIITKDDIYLNQVSVGSIVELEDPE-KNVVTYTILGPWDADADTNILSF 696 Query: 123 SSPIARALIGKELGDIISVN 142 S A A++G+++G+ Sbjct: 697 QSKFAEAMLGRKVGEEFEFR 716 >gi|320335054|ref|YP_004171765.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319756343|gb|ADV68100.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 160 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQ--EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M I +T +GF+++Q+ L ++ EE RI++ EA A +E+ + AK + Sbjct: 1 MARDIKLTREGFERLQRTLDHERERLEEATRILQEQMEASA---DNEDTGLEDAKREKMS 57 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ +LE+ + RA +I+ + +A GA V L + + QIV EA V G Sbjct: 58 IEARIDDLEDTLARATLIEDHSEDAGHVALGAIVVLHNEATKKDMRVQIVSAPEASVLGG 117 Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ L+G++ G+ VN G++ Y++ V + Sbjct: 118 SLPKISDDSPVGTQLLGRKTGESFVVNLENGKQVKYKVKNVEY 160 >gi|15605367|ref|NP_220153.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis D/UW-3/CX] gi|76789375|ref|YP_328461.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydia trachomatis A/HAR-13] gi|237803065|ref|YP_002888259.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis B/Jali20/OT] gi|255311460|ref|ZP_05354030.1| Transcription elongation factor [Chlamydia trachomatis 6276] gi|255317761|ref|ZP_05359007.1| Transcription elongation factor [Chlamydia trachomatis 6276s] gi|255349021|ref|ZP_05381028.1| Transcription elongation factor [Chlamydia trachomatis 70] gi|255503560|ref|ZP_05381950.1| Transcription elongation factor [Chlamydia trachomatis 70s] gi|7531128|sp|O84641|GREA_CHLTR RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gi|3329084|gb|AAC68240.1| Transcription Elongation Factor G [Chlamydia trachomatis D/UW-3/CX] gi|76167905|gb|AAX50913.1| GreA [Chlamydia trachomatis A/HAR-13] gi|231274299|emb|CAX11094.1| Transcription elongation factor [Chlamydia trachomatis B/Jali20/OT] gi|296436174|gb|ADH18348.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/9768] gi|296437102|gb|ADH19272.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/11222] gi|296438034|gb|ADH20195.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/11074] gi|297140536|gb|ADH97294.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis G/9301] gi|297748766|gb|ADI51312.1| GreA [Chlamydia trachomatis D-EC] gi|297749646|gb|ADI52324.1| GreA [Chlamydia trachomatis D-LC] Length = 715 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKIALERRARLQEE 622 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ Sbjct: 623 IHVLSEEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSL 681 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++GK +G+ + G+K +I ++ Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711 >gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae NCTC 13129] gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae] Length = 173 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M D K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MADNQKQYITPETKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ I+ + + G + DK+ + I A Sbjct: 60 EEARIKQISEILANSTTERAGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 L S SP+ A++G + G+ +AP G + I+ Sbjct: 120 LETYSEQSPLGAAVVGAQEGETRQYSAPNGNTISVTIVS 158 >gi|94985913|ref|YP_605277.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] gi|94556194|gb|ABF46108.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] Length = 158 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57 M ++IP+T++G+ ++Q+ L +ER R+ A + A D + E+ +QAA+ Sbjct: 1 MAEEIPMTAEGYRRLQETLE----KERQRLEDATTSMAATLDDAMDLEDRSFQAAQYDLP 56 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ ELE+++ RA +++ +A G+ V L ++ + Q+V E D + Sbjct: 57 TMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRDEQHDRELRVQLVSAVEVDALA 116 Query: 118 G---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 VS SP+ +AL+G+ G+ V+ Y + + Sbjct: 117 EGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARYTVKSI 157 >gi|227501557|ref|ZP_03931606.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49725] gi|306835715|ref|ZP_07468721.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49726] gi|227077582|gb|EEI15545.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49725] gi|304568433|gb|EFM43992.1| transcription elongation factor GreA [Corynebacterium accolens ATCC 49726] Length = 173 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 5/151 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MAEQQKQYITPETKAKLETELQELIDH-RPEVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ ++ + + G N DK+ + I A Sbjct: 60 EEARIKQISELLANSTTERGTMQEGVAYTGSVVHVYYNGNKDDKETFLIGTRAAATDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147 L S SP+ A+IG + G+ +AP G+ Sbjct: 120 LETYSEQSPLGAAIIGAQEGETREYSAPNGK 150 >gi|15895237|ref|NP_348586.1| transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|15024946|gb|AAK79926.1|AE007701_3 Transcription elongation factor GreA [Clostridium acetobutylicum ATCC 824] gi|325509383|gb|ADZ21019.1| Transcription elongation factor GreA [Clostridium acetobutylicum EA 2018] Length = 158 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +DK+++E +R +R I K EA A+GD SENAEY+AAKE N R+ ++ Sbjct: 5 LTKSDYDKLKEEYEYRNTVKRHEIAKKKMEAAAFGDRSENAEYKAAKEEYYHNNRRLGQI 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DVQSGLVSIS 123 ++ A +++ + D + G+ + L + + ++V D +S+ Sbjct: 65 SRLLKNAIIVEEDKID-DEVNIGSEMLLK-IGADETFKAKLVTTLNISVEDEDIEYISVD 122 Query: 124 SPIARALIGKELGDIISVNAPG 145 SP +AL K +GD I VN P Sbjct: 123 SPFGKALYKKHVGDSIDVNLPD 144 >gi|229918722|ref|YP_002887368.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b] gi|229470151|gb|ACQ71923.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b] Length = 152 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G ++ L ++ ER + + AR + D E+ Y A E + Sbjct: 2 KPKLTETGHHQLTDRLVMLRR-ERTDARERLRTARKFCDFREDVTYTEAVRQYERIEADI 60 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 EL +++ A +++ ++ + + FG V + E + + Y+IV + EAD++ G +S++ Sbjct: 61 LELNHLLDDATIVE--SVQSEVVTFGNRVVIREVQQEETERYRIVSEAEADLERGSISVT 118 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ R L+G +G I V PGG E+L + Sbjct: 119 SPLGRRLMGATMGQTIQVETPGGTIQVEVLHIE 151 >gi|146294887|ref|YP_001185311.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|145566577|gb|ABP77512.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 114 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 + + R+ L + +++D S +I FGA L ++G++ Y+IVG E D Sbjct: 1 MLRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELD 59 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + G ++I SP+ARALIGK++ D + V P G K + I ++ + Sbjct: 60 TKLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 102 >gi|330444026|ref|YP_004377012.1| transcription elongation factor greA [Chlamydophila pecorum E58] gi|328807136|gb|AEB41309.1| Transcription elongation factor greA [Chlamydophila pecorum E58] Length = 721 Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 81/154 (52%), Gaps = 6/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D VTS+ F +++++L+ +E + I +ARA GDL EN+EY+ A E + + Sbjct: 569 DVFWVTSQSFSRMKEKLQSLVGKEMVDNAREIEDARALGDLRENSEYKFALERRARLQEE 628 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I +A+++ + + ++ G V+L + Y ++G +AD + ++S+ Sbjct: 629 IRVLSEEINKAKILTKADVHTHKVGVGCRVTLEDAQG--SIEYTLLGSWDADSEKNILSL 686 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ L+GK + + + + + Y I +++ Sbjct: 687 QSKLAQMLLGKNIDERVQLQG----REYRIAKIV 716 >gi|237804986|ref|YP_002889140.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273286|emb|CAX10201.1| Transcription elongation factor [Chlamydia trachomatis B/TZ1A828/OT] Length = 715 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 + + TS F +++ +L+ +E K I +AR GDL EN+EY+ A E + + Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARVLGDLRENSEYKIALERRARLQEE 622 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ Sbjct: 623 IHVLSEEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSL 681 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++GK +G+ + G+K +I ++ Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711 >gi|225022977|ref|ZP_03712169.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii ATCC 33806] gi|305681896|ref|ZP_07404700.1| transcription elongation factor GreA [Corynebacterium matruchotii ATCC 14266] gi|224944200|gb|EEG25409.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii ATCC 33806] gi|305658369|gb|EFM47872.1| transcription elongation factor GreA [Corynebacterium matruchotii ATCC 14266] Length = 175 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 6/159 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 MV+ K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ Sbjct: 1 MVENQKQYITPESKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ + I+ + + G +K+ + I A Sbjct: 60 EEARIKHISEILANSTTERSGIIEGVAHVGSVVHVYYNGKPENKETFLIGTRAAASDNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154 L S SP+ A++G G+ AP G+ + ++ Sbjct: 120 LETYSEQSPLGAAILGAHEGETREYTAPNGKVISVTVVS 158 >gi|253996329|ref|YP_003048393.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] gi|253983008|gb|ACT47866.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] Length = 168 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 38 RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97 L A+ AK+ E + + + A ++D + S + + FGAT+ + + Sbjct: 48 AELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSAILVDPTKQSHETVLFGATIEVED- 106 Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +G + + IVG+ EAD VS SP+A++L+G+++GD ++ P G EIL + + Sbjct: 107 GAGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQKVGDTVTWQRPAGNINLEILDIHY 166 >gi|53802404|ref|YP_112932.1| transcription elongation factor [Methylococcus capsulatus str. Bath] gi|53756165|gb|AAU90456.1| putative transcription elongation factor [Methylococcus capsulatus str. Bath] Length = 166 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 16/150 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++Q + E + R GD E AK+ E + Sbjct: 29 YVTPAGLAQLQARVAELTAERQ----------RLLGD-----ESVGAKQQLRRVERELRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + A +D + SGDR+ FGATV + + +G+ + Y IVG+ EAD G +S SP Sbjct: 74 YDERVVSAIPVDPAARSGDRVHFGATVEVED-EAGNVQRYSIVGEDEADAAHGKISWVSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+ E GD ++ P G+K IL + Sbjct: 133 LARALLNAEAGDTVTWKRPAGDKELHILAI 162 >gi|227534584|ref|ZP_03964633.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187833|gb|EEI67900.1| transcription elongation factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 128 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 GR+ L+ +I A+V + D G ++L + D+ Y++VG EA + + Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117 Query: 121 SISSPIARAL 130 +I+SP+ A+ Sbjct: 118 AINSPLGAAI 127 >gi|167949283|ref|ZP_02536357.1| transcription elongation factor GreB [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589334|gb|ABG77176.1| transcription elongation factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 166 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +TS G ++ E + + R ++KA+S A A GD SENAEY K+ + R+ Sbjct: 38 YITSDGHQRLLAEEQGLWK-RRREVVKALSAAAAEGDRSENAEYIYRKKELREIDRRIRY 96 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I +V++ + ++ F A V+L + G Y+IVG E D Q+ +S+ SP Sbjct: 97 LQKRIPELKVVEQPPSNRQQVFFAAWVTLED-EQGVTHRYRIVGPDEIDHQADYISMDSP 155 Query: 126 IARA 129 + Sbjct: 156 LGAG 159 >gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum DSM 44291] gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum DSM 44291] Length = 174 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 6/159 (3%) Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M + K +T + K++ EL+ RP I I+E R GDL ENA Y AA+E Q+ Sbjct: 1 MAETQKQYITPEMKAKLENELQALID-NRPVIAAEINERREEGDLKENAGYDAAREQQDQ 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ++ I+ A + G + DK+ + I + Sbjct: 60 EEARIKQISEILANATTERSGVIEGVAQVGSVVHVFYNGDESDKETFLIGTRAASTGNKD 119 Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 L S +SP+ A++G G+ + +AP G E T I+ Sbjct: 120 LETYSENSPLGAAVVGASEGETRTYSAPNGREITVTIVS 158 >gi|330811840|ref|YP_004356302.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379948|gb|AEA71298.1| Putative transcription factor, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 163 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VT G ++Q R+ + + E A+ K+ E Sbjct: 25 AQPNYVTPTGLAQLQA-----------RVAELQALHAQQASRGELAD----KQRIADLER 69 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + + A+V+ + S D++ G V+ V++ +++ Q+VG+ +AD SGL++ Sbjct: 70 DLRYFTQRLQSAQVV--APTSSDQVRIGHWVTFVDEQDHEQR-VQLVGEDQADAASGLIN 126 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ RAL+G ++GD ++ P G E++ + Sbjct: 127 WGSPLGRALLGAKVGDEVTWERPLGNLAIEVVAI 160 >gi|320334564|ref|YP_004171275.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319755853|gb|ADV67610.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 160 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 4/160 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T +G++++++ L +++ R +++ E+ QAA+ + Sbjct: 1 MTQKIQMTREGYERLERALEH-ERQRRDEATASMAAVLDDAIDLEDRSLQAAQHDFAGMD 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG---DQEADVQS 117 R+ ELE+ + RAE++D + + G+ V L + Q+V D Sbjct: 60 ARIMELEDALVRAEIVDTVDDADGHVRIGSVVDLHDNTQNRDVRVQLVSAVETTLLDEGI 119 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 VS SP+ +AL+G++ GD +V+ +K Y + V Sbjct: 120 THVSDDSPVGKALLGRQRGDTFTVDLGDRQKDYTVQNVEH 159 >gi|284036025|ref|YP_003385955.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74] gi|283815318|gb|ADB37156.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74] Length = 171 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G ++ E ++E A A L++ E L G++A Sbjct: 30 YVTPRGLAMLRDEFEKLEKEH----------ALAQTQLTDENE---RTRQLALLNGQIAA 76 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQSGLVSISS 124 L I A+V+++ D + FGATV+L +++G + IVG EAD G ++ + Sbjct: 77 LNQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFPA 136 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 PIAR L+GK++GD I++ P GE EI + + Sbjct: 137 PIARLLLGKKVGDFITLRTPRGENALEITSIYY 169 >gi|210610359|ref|ZP_03288364.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787] gi|210152509|gb|EEA83515.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787] Length = 103 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/99 (38%), Positives = 59/99 (59%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ Sbjct: 1 RDIEARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSL 60 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +G +S SP+ +ALIGK++GD + V A G YE+L++ Sbjct: 61 AGKISNESPLGKALIGKKVGDKVEVEAQAGIIEYEVLKI 99 >gi|255534798|ref|YP_003095169.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium 3519-10] gi|255340994|gb|ACU07107.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium 3519-10] Length = 183 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G + +QQE E+ D S EY+ A N R+ Sbjct: 47 WVTPAGMEALQQERADLISEQ------------EKLDPSHEREYRIA---FNHLNARLQL 91 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A++ID + +S + FGATV+ N+ ++ +Q+VG EA++ G ++ ++P Sbjct: 92 LNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNLRQTFQLVGVDEANISKGKLAFTTP 151 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ALI ++G+ +++ +EIL + + Sbjct: 152 LAKALINSKVGEKVTLQLGDKTNIFEILSIGY 183 >gi|152981797|ref|YP_001351733.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] gi|151281874|gb|ABR90284.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] Length = 175 Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 10/153 (6%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G+ +QQEL+ RP A D ++ A A + E R+ Sbjct: 28 YITPDGYRHLQQELQQLLDVARP--------AAMQMDAADTAMASAQEASLREIEQRIHY 79 Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L+ + AEV+D S GDRI FGA+V +G+ IVG E D G +S S Sbjct: 80 LQTRVESAEVVDASVHADGDRIFFGASVDYENT-AGETHTATIVGLDELDPAQGRISWLS 138 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 P+A++L+G E GD + + P G + +L V + Sbjct: 139 PLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171 >gi|325283338|ref|YP_004255879.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] gi|324315147|gb|ADY26262.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] Length = 165 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 7/161 (4%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +I +T +G++++++ L +QE + + E SE+ + AK + E Sbjct: 7 TKQIKLTKEGYERLEKALAQ-EQERLTEATRIVQEQMENSTDSEDTGLEDAKREKRQVEA 65 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118 R+ ELE+ + RA VI+ G + GATV L + + + ++V EA V+ G Sbjct: 66 RIEELEDTLARATVIEGGADDG-AVNLGATVVLSNETAKKEMTVKVVSAAEASVRGGDKT 124 Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ R L+G+ GD VN GG++ Y++ V + Sbjct: 125 PRISDDSPVGRELMGRREGDAFVVNLEGGKQVKYKVKSVSY 165 >gi|149378117|ref|ZP_01895837.1| transcription elongation factor GreB [Marinobacter algicola DG893] gi|149357602|gb|EDM46104.1| transcription elongation factor GreB [Marinobacter algicola DG893] Length = 108 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + R+ L + V+D ++ FGA V++ E GD+ Y++VG E D+ Sbjct: 1 MREIDRRVRFLTKRLDELTVVDRLPDDRGKMFFGAWVTI-ESEDGDESTYRLVGPDEFDL 59 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +SI SP+ARAL+GK + D + V P G I + + Sbjct: 60 SRGYLSIDSPMARALLGKRIDDEVGVRTPDGWNHVVITNIHY 101 >gi|226228266|ref|YP_002762372.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27] gi|226091457|dbj|BAH39902.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27] Length = 161 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 81/152 (53%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 + + ++ +E+ Q E + I +A GDL EN+EY+AA E Q + R+ +L Sbjct: 1 MFQELIAQMAREVEKLQFELNVTLPNEIRKAVELGDLKENSEYKAALERQQFVQARLGQL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +T+ IDI+ + GDR+ G+ V + + S ++ Y++V ++ G V++ SPI Sbjct: 61 TQRVTKLANIDITQIPGDRVGLGSKVIVEDLQSKARETYELVFGDAGELHDGHVTMGSPI 120 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 RAL GK +G+ + P + +I+++ I Sbjct: 121 GRALQGKSVGEEAILKLPTRIRKLQIVELQTI 152 >gi|84386347|ref|ZP_00989375.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378771|gb|EAP95626.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 107 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 + + R+ L + ++D S ++ FGA V + + G+ K ++IVG +E Sbjct: 1 MLRQIDRRVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEMKKFRIVGPEEIY 59 Query: 115 VQ-SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G +SI SP+ARAL+ KE+ D +V P G+K + I + + Sbjct: 60 GDAKGYISIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 103 >gi|194246641|ref|YP_002004280.1| Transcription elongation factor [Candidatus Phytoplasma mali] gi|193806998|emb|CAP18433.1| Transcription elongation factor [Candidatus Phytoplasma mali] Length = 162 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M DK +T G +++++L + R +K + EAR GDLSENA+Y AA+ Q Sbjct: 1 MEDKKNIYELTKSGVLELKEQLHHLTEIRRIENLKILKEAREQGDLSENADYDAARNEQA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 L E + +++NI+ + + I ++ + G V L KK++ +VG E D Sbjct: 61 LIENEILKIKNILKKIK--IIKSLKNKEVNIGKLVELNFLEKNIKKSFYLVGILETDPSL 118 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 +SI P+ + + G ++GD I++ + G+ EIL+V Sbjct: 119 NKISIDCPLGKGIRGHQVGDKITIQSETGKNFQVEILKVE 158 >gi|291295876|ref|YP_003507274.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279] gi|290470835|gb|ADD28254.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279] Length = 157 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 4/159 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ +T G++++ EL ++ + + E D +++ + AK + E Sbjct: 1 MAREVKLTKSGYERLVAELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSG 118 R+ L + ++RA++++ ++ GA VSL K G+ Q+V EA V + Sbjct: 60 ARIDSLTDTLSRAQIMEEEGTKVSQVTLGAIVSLRSKE-GEIMEVQVVAPAEASVLERPM 118 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S SP+ RAL+G+++G + + P G+K ++I + Sbjct: 119 KISDESPMGRALLGQQVGAKVLLETPKGKKEFKIESIQH 157 >gi|312963140|ref|ZP_07777625.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] gi|311282651|gb|EFQ61247.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] Length = 165 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 17/150 (11%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++Q ++ + E A E A+ K+ Q E + Sbjct: 30 LTAQGLTQLQA-----------KVAQLQLEYSAESAKGEKAD----KQRQADLERDLRYF 74 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+V+ +T S D++ G+ V+ +++ Q+VG+ +AD +GL++ SP+ Sbjct: 75 NQRVQSAQVVPPAT-SCDKVQIGSWVTFAN-EQDEQQRVQLVGEDQADANAGLINWGSPL 132 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 RAL+G ++GD + P G++ E+L+V Sbjct: 133 GRALLGAQVGDEVLWKRPVGDQLIEVLRVE 162 >gi|89898809|ref|YP_515919.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila felis Fe/C-56] gi|89332181|dbj|BAE81774.1| transcription elongation and transcript cleavage factor [Chlamydophila felis Fe/C-56] Length = 717 Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D++ G VSL ++ G Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDVVFTDKVGVGCKVSLEDEK-GSLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++ K +G + K Y+I ++ Sbjct: 683 KSKLAQEMLDKSVGASLQFQG----KKYKISRIQ 712 >gi|114049370|ref|YP_739920.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113890812|gb|ABI44863.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 113 Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + R+ L + +++D S +I FGA L +G++ Y+IVG E D Sbjct: 1 MRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGERVRYRIVGKDELDT 59 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + G ++I SP+ARALIGK++ D + V P G K + I + + Sbjct: 60 KLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 101 >gi|29839773|ref|NP_828879.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila caviae GPIC] gi|29834120|gb|AAP04757.1| transcription elongation factor GreA [Chlamydophila caviae GPIC] Length = 717 Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +AR GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLSGKEMVDNAKEIEDARVLGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D++ G VSL + +G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDKVGVGCKVSLED-ENGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +A+ ++ K +G + K Y+I ++ I Sbjct: 683 KSKLAQEMLDKSVGAAVQFQG----KKYKISRIQSI 714 >gi|28871733|ref|NP_794352.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213966755|ref|ZP_03394906.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|301383263|ref|ZP_07231681.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato Max13] gi|302133480|ref|ZP_07259470.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854985|gb|AAO58047.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato str. DC3000] gi|213928605|gb|EEB62149.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato T1] gi|331018897|gb|EGH98953.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G +++ + Q + A L E ++ K+ E + Sbjct: 29 YVTAHGLRLLKEHVSSLQAQH-----------SAQSALGEASD----KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD GL++ SP Sbjct: 74 FNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQADAAKGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD ++ P G+ + E+L + Sbjct: 132 LGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162 >gi|329942321|ref|ZP_08291131.1| transcription elongation factor GreA domain protein [Chlamydophila psittaci Cal10] gi|313847560|emb|CBY16548.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|328815231|gb|EGF85219.1| transcription elongation factor GreA domain protein [Chlamydophila psittaci Cal10] Length = 717 Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S +A+ ++ K +G + K Y+I ++ I Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQSI 714 >gi|332286963|ref|YP_004421864.1| fused trancript cleavage factor/uncharacterized domain-containing protein [Chlamydophila psittaci 6BC] gi|325506501|gb|ADZ18139.1| fused trancript cleavage factor/uncharacterized domain-containing protein [Chlamydophila psittaci 6BC] gi|328914193|gb|AEB55026.1| transcription elongation factor GreA [Chlamydophila psittaci 6BC] Length = 717 Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVDKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++ K +G + K Y+I ++ Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQ 712 >gi|28875484|gb|AAO59965.1| GreA [uncultured bacterium] Length = 597 Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T+ G ++ ++ L+ Q R ++ A DL E +E E +A+ Sbjct: 459 YMTAAGAERYRRRLQQLVQ-RRDELL-----ASPDDDLPERSE-------LATLERELAQ 505 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++ A VI +++ D + FGA +VE + G + +Q+VG+ EA + GLV+ SP Sbjct: 506 VSAVLQGAIVIRLASPPRDEVRFGAE-VVVEDDRGSRSRFQLVGENEAAPERGLVNWFSP 564 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + RAL G LG + P G Y + ++ + Sbjct: 565 LGRALAGARLGQRVEWTTPAGRGAYVVREISY 596 >gi|70732647|ref|YP_262410.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] gi|68346946|gb|AAY94552.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5] Length = 197 Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 17/155 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 VT +G ++Q R+ S+ DL ++A+ K+ E Sbjct: 58 AQPNYVTPQGLAELQA-----------RVALLHSQHSEQNDLGDDAD----KQRMAELER 102 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + + A+V+ + S D++ G+ V+ + +++ Q+VG+ +AD GL++ Sbjct: 103 DLRYFTQRLHSAQVV-TTANSTDKVQIGSRVTFAD-EQDRQQSVQLVGEDQADAAKGLIN 160 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +SP+ RAL+G + GD + P G + EI+++ Sbjct: 161 WASPLGRALLGAQPGDEVLWQRPAGNQLIEIIRIE 195 >gi|62184651|ref|YP_219436.1| fused transcript cleavage factor/uncharacterized domain-containing protein [Chlamydophila abortus S26/3] gi|62147718|emb|CAH63462.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 717 Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + + Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+ Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +A+ ++ K +G + K Y+I ++ Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQ 712 >gi|256370764|ref|YP_003108589.1| putative transcription elongation factor GreA [Candidatus Sulcia muelleri SMDSEM] gi|256009556|gb|ACU52916.1| putative transcription elongation factor GreA [Candidatus Sulcia muelleri SMDSEM] Length = 157 Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 80/135 (59%), Gaps = 1/135 (0%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + ER +I + I+EA GDLSEN+EY+ AKE Q L E ++ L+ I +ID+S ++ Sbjct: 21 ENLERLKIAEEIAEAIEKGDLSENSEYKIAKENQRLLEIKIFNLKKKINNTRIIDLSKIN 80 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 +++ V + +G+ Y +V + E++++ +SI +PIA+ LIGK++G+I + Sbjct: 81 TTKVSIFTKVKVKNIETGECIYYTLVPETESNIKKLKISIYTPIAKGLIGKKIGEIAHIK 140 Query: 143 APGGE-KTYEILQVL 156 P + +IL++ Sbjct: 141 LPNNKFVNLKILKIK 155 >gi|298488825|ref|ZP_07006852.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156666|gb|EFH97759.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 165 Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT++G +++ + +A A+ A GD ++ K+ Q E + Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RALIG + GD + P G ++ EIL + Sbjct: 131 PLGRALIGAQKGDEVVWEPPAGNQSIEILLIE 162 >gi|302062497|ref|ZP_07254038.1| transcription elongation factor GreB [Pseudomonas syringae pv. tomato K40] Length = 165 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G +++ + Q + A L E ++ K+ E + Sbjct: 29 YVTAHGLRLLKEHVSSLQAQH-----------SAQSALGEASD----KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD GL++ SP Sbjct: 74 FNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQADAAKGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD ++ P G+ + E+L + Sbjct: 132 LGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162 >gi|330888755|gb|EGH21416.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori str. 301020] Length = 165 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT++G +++ + +A A+ A GD ++ K+ Q E + Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ + +S +++ G+ V+ ++ + ++ +VG+ +AD GL++ S Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEENNRQR-VHLVGEDQADAAKGLINWGS 130 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RALIG + GD + P G ++ EIL + Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162 >gi|223557977|gb|ACM90983.1| transcription elongation factor GreA [uncultured bacterium URE4] Length = 112 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 58/102 (56%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q L E ++A L+ + A VID S +S D + + V++ N+ K +QIVG+ EAD Sbjct: 10 RQGLLEVKIARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEAD 69 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 GL+S S+PI +AL+G G+++ P G ++IL + Sbjct: 70 FSKGLLSASTPIGKALMGHGKGEVVEAKVPSGIMKFKILDIS 111 >gi|289628327|ref|ZP_06461281.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650125|ref|ZP_06481468.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 2250] gi|330869003|gb|EGH03712.1| transcription elongation factor GreB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 165 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT++G +++ + +A A+ A GD ++ K+ Q E + Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S Sbjct: 73 YYTQRLQSAQVV-TTAISTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RALIG + GD + P G ++ EIL + Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162 >gi|71735306|ref|YP_276410.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482138|ref|ZP_05636179.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71555859|gb|AAZ35070.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265608|dbj|BAF32869.1| transcription elongation factor GreB [Pseudomonas syringae pv. phaseolicola] gi|320322617|gb|EFW78710.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. B076] gi|320330598|gb|EFW86577.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] gi|330873441|gb|EGH07590.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] gi|330987544|gb|EGH85647.1| transcription elongation factor GreB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011394|gb|EGH91450.1| transcription elongation factor GreB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT++G +++ + +A A+ A GD ++ K+ Q E + Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RALIG + GD + P G ++ EIL + Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162 >gi|218512591|ref|ZP_03509431.1| transcription elongation factor GreA [Rhizobium etli 8C-3] Length = 106 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 60/87 (68%), Positives = 73/87 (83%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NEGR+ EL Sbjct: 1 MTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGRITEL 60 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVS 93 E++ RAEVID++ MSGD+I FGA Sbjct: 61 EDLTARAEVIDLTKMSGDKIKFGAQGE 87 >gi|229592705|ref|YP_002874824.1| putative transcription elongation factor [Pseudomonas fluorescens SBW25] gi|229364571|emb|CAY52453.1| putative transcription elongation factor [Pseudomonas fluorescens SBW25] Length = 162 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 20/150 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T++G ++Q ++ Q A S A GD K+ Q E + Sbjct: 30 LTAQGLAQLQAKVAQLQH--------AYSIESAKGD----------KQRQADLERDLRYF 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+V+ +T S D++ G+ V+ +++ Q+VG+ +AD +GL++ SP+ Sbjct: 72 NQRLQSAQVVAPAT-STDKVQIGSWVTFAN-EQDEQQRIQLVGEDQADANAGLINWGSPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 RAL+G ++GD + P G++ E+L++ Sbjct: 130 GRALLGAQVGDEVLWKRPVGDQLIEVLRIE 159 >gi|330961596|gb|EGH61856.1| transcription elongation factor GreB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMA 64 VT++G + +Q+++ +A A A GD ++ K+ E + Sbjct: 29 YVTARGLELLQEQVSNL---------QAQHSAQSALGDDAD-------KQRLADLERDLR 72 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ + S +++ G+ V+ +++ ++ +VG+ +AD +GL++ S Sbjct: 73 YFNQRLHSAQVVAPAA-STEKVQIGSWVTFADEDDNRQR-VHLVGEDQADAANGLINWGS 130 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ RALIG + GD + P G+ + E+L + Sbjct: 131 PLGRALIGAQKGDEVVWQRPAGDLSIEVLLIE 162 >gi|77461094|ref|YP_350601.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1] gi|77385097|gb|ABA76610.1| putative transcription elongation factor [Pseudomonas fluorescens Pf0-1] Length = 164 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G ++Q +L Q +E A G+ QA K+ E + Sbjct: 29 YVTPQGLTQLQTKLAELQSLH--------AEQSAKGE-------QADKQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V + S D++ G+ V+ + G ++ Q+VG+ +AD +GL++ +SP Sbjct: 74 FNQRVASAQVA-PAPTSNDKVQIGSWVTYAD-EHGTERRVQLVGEDQADAANGLINWASP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RAL+G L D + P G++ E++++ Sbjct: 132 LGRALLGARLNDEVLWQRPAGDQVIEVIRIE 162 >gi|227487834|ref|ZP_03918150.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51867] gi|227542474|ref|ZP_03972523.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51866] gi|227092161|gb|EEI27473.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51867] gi|227181672|gb|EEI62644.1| transcription elongation factor GreA [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V K +T + +++EL+ RP I I+E R GDL ENA Y AA++ Q E Sbjct: 4 VQKTYITPESKAALERELKALID-NRPAIAAEINERREEGDLKENAGYDAARDQQAQEES 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119 R+ E+E ++ + + G+ + DK+ + I A + Sbjct: 63 RIREIEEMLKNSTTERTALKEGEAQVGSVVHVYYNDDENDKETFLIGTRATASDNPDLET 122 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE 147 S SP+ A++G G+ AP G Sbjct: 123 YSELSPLGAAVLGATEGETRQYTAPNGV 150 >gi|289806266|ref|ZP_06536895.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 79 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 57/77 (74%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + Sbjct: 3 NNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVI 62 Query: 142 NAPGGEKTYEILQVLWI 158 PGG+ YE+L+V ++ Sbjct: 63 KTPGGDVEYEVLKVEYL 79 >gi|253795713|ref|YP_003038809.1| putative transcription elongation factor GreA [Candidatus Hodgkinia cicadicola Dsem] gi|253740021|gb|ACT34356.1| putative transcription elongation factor GreA [Candidatus Hodgkinia cicadicola Dsem] Length = 155 Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T+ G+ + +L WR+Q ++P + + AR+ GDLSENA+YQAA+ LNE R+ E+ Sbjct: 6 LTALGYISLVAQLNWRRQHKKPALKAQLKAARSLGDLSENADYQAARREDKLNEARINEI 65 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + RA++ + + +R ++ +TV L + G + IVGD EA V +SS + Sbjct: 66 LQTLARAKLA-PARSAANRPSYNSTVVLKRAD-GKLLAFNIVGDDEAIATEANVGLSSDV 123 Query: 127 ARALIGKELGDIISV 141 AR + K++GD++ V Sbjct: 124 ARQCLNKKVGDVVVV 138 >gi|227328601|ref|ZP_03832625.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 79 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/76 (44%), Positives = 56/76 (73%) Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + Sbjct: 4 NGRVIFGSTVTVMNLDNEEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIR 63 Query: 143 APGGEKTYEILQVLWI 158 PGG+ YEIL+V ++ Sbjct: 64 TPGGDVEYEILKVEYL 79 >gi|27382335|ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium japonicum USDA 110] gi|27355506|dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65 VT G +Q +L+ +A A+A D++E K Q+ R Sbjct: 31 VTEAGLQALQTQLQ--------EAREAYEAAQAIDDVNE-------KRRQSAVPLRDARY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A+VI + S D +AFG+TV+ + G + Y+IVG+ EAD ++G +S SP Sbjct: 76 LTERLRTAQVI-PTPASTDTVAFGSTVTFSRPD-GRVQTYRIVGEDEADPKAGSISFVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR+LIGK +GD++ G + EIL + Sbjct: 134 VARSLIGKAVGDVV----GAGTQEIEILSI 159 >gi|197123173|ref|YP_002135124.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] gi|196173022|gb|ACG73995.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] Length = 149 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T +GF ++ E E RPRI+ + A A GD SENAEY K+ + R+ Sbjct: 7 YITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 L + V++ R FGA V++ E+ G ++ ++VG E DV +G Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRVRLVGPDEFDVAAG 118 >gi|189423237|ref|YP_001950414.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] gi|189419496|gb|ACD93894.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] Length = 142 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 57/97 (58%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ELE + +AE++D + + D + + VSL + +SG++ Y +V +AD+ G + Sbjct: 36 RYIEELEQELLKAEIVDATGVPPDVVTMNSRVSLQDLDSGEQLQYTLVFPGDADLNLGKI 95 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI +PI AL G GD IS + PGG + +I +VL+ Sbjct: 96 SILAPIGTALFGYRTGDRISWSVPGGVRKLKIKKVLY 132 >gi|330952915|gb|EGH53175.1| transcription elongation factor GreA/GreB [Pseudomonas syringae Cit 7] Length = 165 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G +++ + Q + A L E A+ K+ E + Sbjct: 29 YVTAEGLTLLKKHVNSLQAQH-----------SAQTALGEAAD----KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAANGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|315127999|ref|YP_004070002.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] gi|315016513|gb|ADT69851.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] Length = 96 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 M L I +++D S + ++ FGA V + +G+ K ++IVG E ++ +SI Sbjct: 1 MRYLRKRIPDLKIVDYSPVQDGKVFFGAWVEIEN-EAGECKKFRIVGPDEIYDRNDYISI 59 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ K++ D V P G K + + + + Sbjct: 60 DSPMARALLKKQVDDDFEVMTPQGAKQWYVNNISY 94 >gi|302187999|ref|ZP_07264672.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae 642] Length = 165 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G +++ + Q + + A+ EA K+ E + Sbjct: 29 YVTAEGLTLLKKHVSSLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD GL++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|237801440|ref|ZP_04589901.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024299|gb|EGI04356.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 116 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 K+ E + + A+V+ +S D++ G+ V+ +++ ++ +VG+ + Sbjct: 12 KQRLADIERDLRYFNQRLQSAQVV-APAVSTDKVQIGSWVTFADEDDNRQR-VHLVGEDQ 69 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 AD +GL++ SP+ RALIG GD + P G+ + E+L + Sbjct: 70 ADAANGLINWGSPLGRALIGARQGDEVVWQRPAGDLSIEVLLIE 113 >gi|213584093|ref|ZP_03365919.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 71 Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 54/71 (76%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + PGG+ Sbjct: 1 FGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGD 60 Query: 148 KTYEILQVLWI 158 YE+L+V ++ Sbjct: 61 VEYEVLKVEYL 71 >gi|226356455|ref|YP_002786195.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226318445|gb|ACO46441.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 162 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%) Query: 1 MVDKIPVTSKGFDKIQQELR---WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M D + +T +G+++++Q L R +E + + +A + S NA + + Sbjct: 1 MPDAVQLTREGYERLEQSLEKERQRLEETITSLANTVDDAMDLENRSLNA--AQIGQERI 58 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E R+ ELE+++ RA +++ + ++A G+ V L + G + Q+V E + Sbjct: 59 AIEARILELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMT 118 Query: 118 G---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SP+ +AL+G+ G+ V G Y + V Sbjct: 119 EGVTQVSDDSPVGKALMGRREGETFDVELEAGRVQYTVRSVT 160 >gi|330969544|gb|EGH69610.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G ++ + + ++ A L E A+ K+ E + Sbjct: 29 YVTAEGLTLLK------KHVGSLQAQHSMQTA-----LGEAAD----KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAANGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|297170470|gb|ADI21501.1| transcription elongation factor [uncultured myxobacterium HF0070_11L13] Length = 91 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 +++D S ++ FGA V + + G ++IVG E + +SI SP+ARAL+ Sbjct: 4 NLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALL 62 Query: 132 GKELGDIISVNAPGGEKTYEILQVLWI 158 KE+GD+ VN P GE ++ + + ++ Sbjct: 63 KKEVGDLAVVNTPAGEASWYVNAIEYV 89 >gi|260576470|ref|ZP_05844460.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2] gi|259021353|gb|EEW24659.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2] Length = 167 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%) Query: 6 PVTSKGFDKIQQELRWRQQEER-----PRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 VT +G +Q L Q P + + EA A E Sbjct: 27 YVTPRGLALLQTRLAEAQARLAALRARPERLDKLPEAAA--------------------E 66 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + LE + A +D S+ +AFGA V + G ++ +QI G+ EAD + Sbjct: 67 RDIRYLEARLRSAIPVDPSSQPAGEVAFGARVEVA-LADGSRQVWQITGEDEADATQNRI 125 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + SP+ARAL+G E+GD++ P G E+L + + Sbjct: 126 APQSPLARALLGAEVGDLVIWRKPSGPVELEVLAIAY 162 >gi|330937778|gb|EGH41648.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. pisi str. 1704B] gi|330981878|gb|EGH79981.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G +++ + Q + + A+ EA K+ E + Sbjct: 29 YVTAEGLTMLKKHVSSLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD G ++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGQINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|150377254|ref|YP_001313849.1| transcription elongation factor regulatory protein [Sinorhizobium medicae WSM419] gi|150031801|gb|ABR63916.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419] Length = 160 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65 VT +G ++ +L+ AR D + E + Q N R M Sbjct: 31 VTEEGLKALESQLKQ---------------AREAYDATSTIEDVNERRRQAANPLRDMRY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+++ +S D +AFG+TV+ ++ G ++Y+IVG+ EAD +SG +S +SP Sbjct: 76 FAERVRTAQLV-PGPVSFDAVAFGSTVTFS-RDDGRVQSYRIVGEDEADPRSGSISYASP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +ARAL+GK +GD++SV G++ E+L + Sbjct: 134 VARALMGKAVGDVVSV----GDQELEVLAI 159 >gi|307140091|ref|ZP_07499447.1| transcription elongation factor GreB [Escherichia coli H736] Length = 93 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61 Query: 63 MAELENIITRAEVIDISTMSGDRIAF 88 + L + +++D S ++ F Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFF 87 >gi|330895488|gb|EGH27800.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 165 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G +++ + Q + + A+ EA K+ E + Sbjct: 29 YVTAEGLTMLKKHVSGLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD G ++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGQINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|66047490|ref|YP_237331.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae B728a] gi|63258197|gb|AAY39293.1| Prokaryotic transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae B728a] Length = 165 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G ++ + + ++ A L E A+ K+ E + Sbjct: 29 YVTAEGLTLLK------KHVGSLQAQHSMQTA-----LGEAAD----KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNRQR-VHLVGEDQADAANGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RALIG + GD + P G+++ E+L + Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162 >gi|289610114|emb|CBI60320.1| unnamed protein product [Sordaria macrospora] Length = 108 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + A V+D + + R FGATV++ +++ + ++VGD EAD G + + Sbjct: 15 FLAKRMKAARVVDPAAQTERGRAWFGATVTIADEDDNH-RTLELVGDDEADAGKGRIGWN 73 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL G +GD+ +V P G K YE++ + + Sbjct: 74 SPMARALRGSAVGDVRTVALPAGAKEYEVMAIAY 107 >gi|226355352|ref|YP_002785092.1| transcription elongation factor [Deinococcus deserti VCD115] gi|226317342|gb|ACO45338.1| putative transcription elongation factor [Deinococcus deserti VCD115] Length = 162 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 ++ +T +GF+++Q+ L +Q+ + + E +E+ + AK + E R Sbjct: 6 RQVRLTREGFERLQKTLEQ-EQQRLAEATRILQEQMETSADTEDTGLEDAKREKMAIEAR 64 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119 + ELE+ + RA +I+ G R+ GA V+L + + Q+V EA V G Sbjct: 65 LDELEDTLARATIIEDHENDG-RVELGAIVNLSNETTKKDMKVQVVSAPEAAVLGGSLPR 123 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ + L+G++ GD VN GG++ Y++ + + Sbjct: 124 ISEDSPVGKELMGRKTGDSFVVNLEGGKQVKYKVKSIEY 162 >gi|320334324|ref|YP_004171035.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] gi|319755613|gb|ADV67370.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM 21211] Length = 157 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNL 58 M I VT+ G ++Q L ++ +++ EA +E+ A++ Sbjct: 1 MASPIQVTAAGLQRLQGSLDRERERAEEARRVLREQMEANE----AESLGLTEAQQHLAA 56 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 E R+ ELE +I AEV+ ST D +A G+T++L+ +G + ++V EA Sbjct: 57 IEARIEELEGMIADAEVLPAST--SDAVALGSTLTLLNVENGQVRRVRLVSPVEATGSVD 114 Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 L+S SP+ AL+G+ +G+ SV G Y++ Sbjct: 115 GVALISTQSPVGAALLGRRVGETFSVRLGGRTAEYQV 151 >gi|330873471|gb|EGH07620.1| transcription elongation factor GreB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 165 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G +++ + Q + + A+ EA K+ E + Sbjct: 29 YVTAYGLTLLKEHVSSLQAQHSAQ--NALGEATD-------------KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP Sbjct: 74 FTQRLQSAQVV-APALSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + AL+G + GD + P G++T E+L + Sbjct: 132 LGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162 >gi|78223803|ref|YP_385550.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] gi|78195058|gb|ABB32825.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 142 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 57/95 (60%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ + RAEV++ + D I + V L + +SG++ +Y +V +A ++ +SI Sbjct: 38 LRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRISI 97 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P+ AL+G +GD I+ PGG + ++ ++L+ Sbjct: 98 LAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILY 132 >gi|110639992|ref|YP_680202.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] gi|110282673|gb|ABG60859.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] Length = 149 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 9/117 (7%) Query: 50 QAAKELQNLNEGR----MAELE-----NIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 ++ Q +NE + ++ +E N + ++++ + + + + V++V +S Sbjct: 23 DYSRIQQCINEAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVTIVFMDSN 82 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +Q+V +ADV++ +SI SPIA ALIG ++GD I P G +I + + Sbjct: 83 KRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGMTKIKIESIAY 139 >gi|170723669|ref|YP_001751357.1| GreA/GreB family elongation factor [Pseudomonas putida W619] gi|169761672|gb|ACA74988.1| GreA/GreB family elongation factor [Pseudomonas putida W619] Length = 165 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G ++QQ + + + GD A+ E + Sbjct: 29 YVTTNGLRQLQQRVADLN-----ALRAELQAQGEQGDKQRLADA----------ERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ + S ++ G+ V + G ++ Q+VG+ EAD GL++ SP Sbjct: 74 FSARVQSAQVV-PAATSNSKVQIGSRVRFAD-EQGQEQTVQLVGEDEADASRGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RAL+G GD ++ P G++ E++ ++ Sbjct: 132 LGRALLGAGPGDEVTWRRPAGDQVIEVMDIV 162 >gi|115265559|dbj|BAF32821.1| transcription elongation factor [Pseudomonas syringae pv. actinidiae] gi|330965293|gb|EGH65553.1| transcription elongation factor GreB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 165 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G +++ + Q + + A+ EA K+ E + Sbjct: 29 YVTAYGLTLLKEHVGSLQAQHSAQ--NALGEATD-------------KQRLADLERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP Sbjct: 74 FTQRLQSAQVV-APALSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + AL+G + GD + P G++T E+L + Sbjct: 132 LGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162 >gi|289675905|ref|ZP_06496795.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv. syringae FF5] Length = 123 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A K+ E + + A+V+ +S +++ G+ V+ ++ ++ +VG+ Sbjct: 17 ADKQRLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGE 74 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AD G ++ SP+ RALIG + GD + P G+++ E+L + Sbjct: 75 DQADAAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 120 >gi|332981932|ref|YP_004463373.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON] gi|332699610|gb|AEE96551.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON] Length = 138 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 18/145 (12%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 +DK++Q L + ++ I + E NAE + L + + L ++ Sbjct: 11 YDKLRQHLDAIKSKKDDMIDRYFPEL--------NAERY---DFMQLMDDYIKRLGELLQ 59 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131 + + G+TV + + + + +V E++ G +S SPI ++L+ Sbjct: 60 QN-------CDTPFVIIGSTVKVRDIDDDYTITFTLVCPHESNPVKGCISYLSPIGKSLL 112 Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156 K+ G+I+SV P GE YEIL++ Sbjct: 113 LKKAGEIVSVVTPNGEVRYEILEIK 137 >gi|207110701|ref|ZP_03244863.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_CA4C1] Length = 84 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 37/83 (44%), Positives = 55/83 (66%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60 Query: 62 RMAELENIITRAEVIDISTMSGD 84 R+ +L I+ A+VID S ++ + Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHN 83 >gi|39995838|ref|NP_951789.1| nucleoside diphosphate kinase regulator protein [Geobacter sulfurreducens PCA] gi|39982602|gb|AAR34062.1| nucleoside diphosphate kinase regulator protein, putative [Geobacter sulfurreducens PCA] gi|307634737|gb|ADI83574.2| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400] Length = 142 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 56/97 (57%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + ELE+ + RAEV++ + D + + V+L + +G++ Y++V +A ++ + Sbjct: 36 RHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVYELVFPSDARLEENRI 95 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI +P+ AL+G GD I+ PGG + +I ++L+ Sbjct: 96 SILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILY 132 >gi|104780044|ref|YP_606542.1| transcription elongation factor [Pseudomonas entomophila L48] gi|95109031|emb|CAK13727.1| putative transcription elongation factor [Pseudomonas entomophila L48] Length = 165 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G ++QQ + + E A GD ++ K+ E + Sbjct: 29 YVTASGLAQLQQRVATLKALH--------GELLAEGDRAD-------KQRLADTERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + A+V+ + S ++ G+ V V+ +G Q+VG+ +AD GLV+ SP Sbjct: 74 FTSRLHSAQVV-PAATSTQKVQIGSRVRFVD-ENGQAHQVQLVGEDQADAVHGLVNWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RAL+G GD + P G++ EI+ V Sbjct: 132 LGRALLGAGPGDEVLWRRPAGDQMIEIIGVE 162 >gi|325142644|gb|EGC65035.1| transcription elongation factor greA [Neisseria meningitidis 961-5945] Length = 72 Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 36/70 (51%), Positives = 55/70 (78%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 62 RMAELENIIT 71 R++ELE+ ++ Sbjct: 61 RISELEHKLS 70 >gi|298206901|ref|YP_003715080.1| transcription elongation factor, putative [Croceibacter atlanticus HTCC2559] gi|83849535|gb|EAP87403.1| transcription elongation factor, putative [Croceibacter atlanticus HTCC2559] Length = 166 Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G +++ EL+ +E+ IK E R + +M + Sbjct: 30 YVTPNGLQELKTELKQLAEEQANLGIKDDQERR---------------RAIAVITAKMNQ 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + A ++D D + FGATV L K S + +QIVG EA+++ ++ +P Sbjct: 75 LKERLASARLLDPKDQPKDEVRFGATVKLKNKTSNLVQEFQIVGVDEANIKKQKIAFVAP 134 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + A+IG ++ + +S N G + EIL + + Sbjct: 135 LVSAIIGAKVNENVSFNLGGEVRELEILSITY 166 >gi|302039171|ref|YP_003799493.1| transcription elongation factor, greA/greB family [Candidatus Nitrospira defluvii] gi|300607235|emb|CBK43568.1| Transcription elongation factor, greA/greB family [Candidatus Nitrospira defluvii] Length = 138 Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 50/92 (54%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LEN + RA V+D S + D + + V + + +G + Y +V +A +Q +SI +P Sbjct: 37 LENELDRAHVVDPSAVPHDVVTMNSQVRIEDVETGAENVYTLVFPSDAGIQEKKLSILAP 96 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I AL+G G+ + + P G +T I +VL+ Sbjct: 97 IGTALLGARAGETVDWSVPAGVRTVRIKEVLY 128 >gi|311746267|ref|ZP_07720052.1| transcription elongation factor GreA [Algoriphagus sp. PR1] gi|126576500|gb|EAZ80778.1| transcription elongation factor GreA [Algoriphagus sp. PR1] Length = 166 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G +++Q E + +E+ E R + ++ Sbjct: 30 YVTETGMEELQAEKQALIEEKSNLTAATEQEKRIASN---------------FISAKIKL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ I A+++D+S + I FGA V+L S YQ+VG EAD+ +S SP Sbjct: 75 LDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADISKNKISFISP 134 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA LIGK++G+ +++ G++ +E++++ + Sbjct: 135 IAMILIGKKVGEKATLSLTKGDRVFEVMEIKY 166 >gi|254669933|emb|CBA04519.1| transcription elongation factor GreA [Neisseria meningitidis alpha153] Length = 72 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 36/71 (50%), Positives = 50/71 (70%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 FG TV+L + + + YQIVG+ EAD++ G + + SPIARALIGKE GD V APGG Sbjct: 2 FGTTVTLEDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGV 61 Query: 148 KTYEILQVLWI 158 + Y+I++V +I Sbjct: 62 REYDIIEVRYI 72 >gi|90423091|ref|YP_531461.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisB18] gi|90105105|gb|ABD87142.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 160 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 22/151 (14%) Query: 6 PVTSKGFDKIQQELRW-RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 VT+ G +Q +L R E + I ++E R R+ Sbjct: 30 WVTAAGLKALQDQLDAARTGVEAAQAIADVNERRRQE--------AGPLRDARYLAARVR 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 E + S D +AFG+TV+ + G ++++IVG+ EAD ++G +S S Sbjct: 82 TAELM--------PVPSSSDIVAFGSTVTFR-RGDGRVQSFRIVGEDEADPKAGSISFVS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+AR L+ K +GD++ G + EI+ + Sbjct: 133 PVARLLLRKSVGDVV----GSGAQELEIIAI 159 >gi|197117702|ref|YP_002138129.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem] gi|197087062|gb|ACH38333.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem] Length = 143 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 59/108 (54%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A+ Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V Sbjct: 26 DKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELVYTLVF 85 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 EAD+ SG +SI +P+ A+IG GD I+ PGG K ++ ++L+ Sbjct: 86 PNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILY 133 >gi|94985009|ref|YP_604373.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] gi|94555290|gb|ABF45204.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM 11300] Length = 162 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +GF+++Q+ L +Q + + E +E+ + AK + E Sbjct: 5 TRQVRLTREGFERLQRTLAQ-EQARLAEATRILQEQMETSADNEDTGLEDAKREKLNIEA 63 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118 R+ ELE+ + RA +I+ +G R+ GA V+L + + Q+V EA V G Sbjct: 64 RIEELEDTLARATLIEDHENAG-RVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLP 122 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ R L+G++ + VN G++ Y + + + Sbjct: 123 RISEESPVGRQLMGRKKDETFVVNLENGKQVKYRVQDIEY 162 >gi|222086639|ref|YP_002545173.1| transcription elongation factor protein [Agrobacterium radiobacter K84] gi|221724087|gb|ACM27243.1| transcription elongation factor protein [Agrobacterium radiobacter K84] Length = 160 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPR-IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G ++ +L+ + I+ ++E R R+ Sbjct: 31 MTEAGLKALELQLQQARAAYAAASTIEDVNERRRQA--------AGPLRDLRYLAERIRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + I + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 AQPI--------PAPASIDIVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKTGSISFVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +A+ L+GK +GD+ SV G++ EI+ + Sbjct: 134 VAKLLMGKSVGDVASV----GDQELEIIAI 159 >gi|120435907|ref|YP_861593.1| GreA-like transcription elongation factor [Gramella forsetii KT0803] gi|117578057|emb|CAL66526.1| GreA-like transcription elongation factor [Gramella forsetii KT0803] Length = 166 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G +++QEL+ + E + +E R Q+L +G++ Sbjct: 30 YVTPNGLAELKQELKDLEYERAHVEAENDTEKR---------------RAQSLIDGKINL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + A ++D D I FGA V L + SG + +QIVG EAD++ ++ +P Sbjct: 75 LSERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVAP 134 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+A+ G+++G+ I + ++L + + Sbjct: 135 IAKAVTGRKVGEEIDFKLGNEIRKLKVLGITY 166 >gi|220922797|ref|YP_002498099.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] gi|219947404|gb|ACL57796.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] Length = 153 Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 26/150 (17%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G I+ EL E A D N + + Sbjct: 30 VTPQGLALIEAELERLHAEH----------AALSPDDKAN---------LSRTSRDLRYW 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A+VI+ + GD + FG+TV++ E+ G + Y IVG+ EAD G ++ +P+ Sbjct: 71 TARRNSAQVIEPTP--GDTVHFGSTVTV-EREDGTRLTYHIVGEDEADPAKGSIAYVAPL 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 ARAL GK+ GD+++V + EI++V Sbjct: 128 ARALTGKQAGDVVTVA----DHEVEIIEVR 153 >gi|218506771|ref|ZP_03504649.1| transcription elongation factor GreA [Rhizobium etli Brasil 5] Length = 60 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 44/59 (74%), Positives = 51/59 (86%) Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + ++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W Sbjct: 1 TEEEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 59 >gi|89897729|ref|YP_521216.1| hypothetical protein DSY4983 [Desulfitobacterium hafniense Y51] gi|219670878|ref|YP_002461313.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense DCB-2] gi|89337177|dbj|BAE86772.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541138|gb|ACL22877.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense DCB-2] Length = 138 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 29/157 (18%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +T+ +R R++K I++ R +G N +Y Sbjct: 1 MSRKISITA---------------VDRERLLKLINKEREFGSAK-NKDY----------- 33 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + +LE+ + A+V+ + G+ I + + L + +G++ Y +V ++AD+ + Sbjct: 34 --LKDLEHELNGADVVPSEKIPGNAITMNSRILLKDLETGEETVYTLVYPEDADLLEDKI 91 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI +P+ A++G GDII PGG +++ ++L+ Sbjct: 92 SILAPVGTAILGYLEGDIIDWKVPGGVVRFKVEKILY 128 >gi|108802197|ref|YP_642394.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS] gi|119871350|ref|YP_941302.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS] gi|126438179|ref|YP_001073870.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS] gi|108772616|gb|ABG11338.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS] gi|119697439|gb|ABL94512.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS] gi|126237979|gb|ABO01380.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS] Length = 153 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T + ++Q EL R I +EA G + A +Q + Sbjct: 4 AQRVWMTPVAYRRLQDELTEL----RTLIA---NEAPDDGQENTVA-------VQRARQT 49 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++ +++ A V + G G +++ +GD++ + + + S Sbjct: 50 RIQQIHDLLLNAVVGEDPPDDG-VAEPGMVLTVRFDQTGDEETFLLGVRGAEYGDLEVYS 108 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 +SSP+ ALIG GD + P G Sbjct: 109 VSSPLGEALIGARPGDRRTYEVPSG 133 >gi|91774873|ref|YP_544629.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] gi|91708860|gb|ABE48788.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT] Length = 138 Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 53/95 (55%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A LE+ + R+E + + D + + V L ++ +G + + +V +AD + +S+ Sbjct: 34 LARLEDELARSEEVPSEQVGADVVTMNSRVLLRDEANGHEMSCTLVFPSDADASANRISV 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +P+ A++G +GD+I PGG + Y IL++ + Sbjct: 94 VAPLGTAILGYRVGDVIDWAMPGGVRQYRILKIDY 128 >gi|222106218|ref|YP_002547009.1| transcription elongation factor [Agrobacterium vitis S4] gi|221737397|gb|ACM38293.1| transcription elongation factor [Agrobacterium vitis S4] Length = 161 Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 20/150 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++++ R + A ARA D++E Q A ++LN L Sbjct: 31 VTESGLKALERQ--------RVQARDAYDAARAIEDVNERRR-QMAGPFRDLN-----YL 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+V+ ++ D ++FG TV+ ++ G + Y+IVG+ EAD ++G +S SP+ Sbjct: 77 EERLHTAQVM-PDPITADSVSFGTTVTFT-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 ARALIGK +GD++S+ G++ EI + Sbjct: 135 ARALIGKAVGDVVSL----GDQELEITAIS 160 >gi|148545953|ref|YP_001266055.1| GreA/GreB family elongation factor [Pseudomonas putida F1] gi|148510011|gb|ABQ76871.1| GreA/GreB family elongation factor [Pseudomonas putida F1] Length = 165 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%) Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 VT+ G ++Q EL + E + GD A+ E Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGEQGDKQRLAD----------TERD 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + A+V+ + S ++ G+ V V+ ++ ++VG+ EAD GL++ Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDT-HDQEQVVRLVGEDEADAGHGLINW 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G GD + P GE+ E++++L Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEIL 162 >gi|218510131|ref|ZP_03508009.1| transcription elongation factor regulatory protein [Rhizobium etli Brasil 5] Length = 160 Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 VT G + EL++ + +A A D++E + A R+ Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 ARVM--------PNPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISHVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK GD + G + EI+ + Sbjct: 134 VARLLMGKAAGDAVE----AGGQELEIIAI 159 >gi|297625162|ref|YP_003706596.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] gi|297166342|gb|ADI16053.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM 17093] Length = 154 Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ VT +G ++Q L+ + + + + E + D +++ + AK+ + E Sbjct: 1 MTREVYVTPEGMRRLQATLQE-EYKRLEEATRILQELTSSSDDYDDSGLEDAKQEKARLE 59 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV---QS 117 R+ +LE ++RA VI+ + + G+ V+L G++ Q+V EA+V Sbjct: 60 RRIDQLEEQLSRAVVIEEHART--QADLGSIVTLQ--GDGEEITVQLVAPVEAEVISEDI 115 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +S SP+ +AL+G+++G+ V Y + + Sbjct: 116 PHISNESPLGKALMGRKVGERFEVKLGRRTAAYTVQSIR 154 >gi|167947983|ref|ZP_02535057.1| Prokaryotic transcription elongation factor GreA/GreB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 52/66 (78%) Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151 + ++E ++ ++ +QIVGD EAD++SGL+S+SSPIARALIGK GD +++ PGG + +E Sbjct: 1 MDVIELDNNEEHTFQIVGDDEADIKSGLISVSSPIARALIGKAEGDEVNLETPGGLREFE 60 Query: 152 ILQVLW 157 +L++ + Sbjct: 61 VLEIRY 66 >gi|190892195|ref|YP_001978737.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CIAT 652] gi|218516641|ref|ZP_03513481.1| transcription elongation factor regulatory protein [Rhizobium etli 8C-3] gi|190697474|gb|ACE91559.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CIAT 652] Length = 160 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 VT G + EL++ + +A A D++E + A R+ Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 AQVM--------PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK GD + G + EI+ + Sbjct: 134 VARLLMGKAAGDAVE----AGGQELEIIAI 159 >gi|313497038|gb|ADR58404.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1] Length = 165 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%) Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 VT+ G ++Q EL + E + GD A+ E Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGERGDKQRLAD----------TERD 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + A+V+ + S ++ G+ V V+ ++ Q+VG+ EAD GL++ Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQD-QEQLVQLVGEDEADAGRGLINW 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G GD + P GE+ E++++L Sbjct: 129 GSPLGRALLGAGPGDEVVWQRPVGEQVIEVVEIL 162 >gi|167031723|ref|YP_001666954.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] gi|166858211|gb|ABY96618.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] Length = 165 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%) Query: 6 PVTSKGFDKIQQ---ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 VT+ G ++Q EL + SE A G+ + K+ E Sbjct: 29 YVTASGLQQLQARVAELNALR-----------SELLAQGERGD-------KQRLADTERD 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + A+V+ + S ++ G+ V V+ + ++VG+ EAD GL++ Sbjct: 71 LRYFSARVQSAQVV-PAAASRSKVQIGSRVRFVDAQD-QEHVVRLVGEDEADAGRGLINW 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G GD + P G++ EIL++ Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGDQVIEILEIE 162 >gi|26987412|ref|NP_742837.1| GreA/GreB family elongation factor [Pseudomonas putida KT2440] gi|24982070|gb|AAN66301.1|AE016258_7 transcription elongation factor, putative [Pseudomonas putida KT2440] Length = 165 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%) Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 VT+ G ++Q EL + E + GD A+ E Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGERGDKQRLAD----------TERD 70 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + A+V+ + S ++ G+ V V+ ++ Q+VG+ EAD GL++ Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQD-QEQVVQLVGEDEADAGHGLINW 128 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ RAL+G GD + P GE+ E++++L Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEIL 162 >gi|209549738|ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535494|gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRMAE 65 VT G + EL++ + +A A D++E + R+ Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAASTVEDVNERRRQAAGPLRDLRYLAARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 AQLM--------ADPASTDTVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK +GD++ G + EI+ + Sbjct: 134 VARLLMGKAVGDVVE----TGGQELEIIAI 159 >gi|253701567|ref|YP_003022756.1| GreA/GreB family elongation factor [Geobacter sp. M21] gi|251776417|gb|ACT18998.1| GreA/GreB family elongation factor [Geobacter sp. M21] Length = 143 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 57/102 (55%) Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V E+D+ Sbjct: 32 QTRDSKNLQELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSKEELVYTLVFPNESDL 91 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SG +SI +P+ A+IG GD I+ PGG K ++ +VL+ Sbjct: 92 ASGKISILAPVGTAMIGFRTGDSITWPVPGGMKNLKVKKVLY 133 >gi|254818888|ref|ZP_05223889.1| transcription elongation factor GreA [Mycobacterium intracellulare ATCC 13950] Length = 165 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 61/152 (40%), Gaps = 12/152 (7%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +I +T + + ++ EL + + + D + N + Q++ R Sbjct: 5 QRIRMTPQDYTRLHDELAGLRSRRGAEVPDDLM------DYNPN-----RRARQSVWRAR 53 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + E+E +++ A V+ G +++ ++G+ + + D S+ Sbjct: 54 ICEIEGLLSHAVVVGEGAAFDPVAEAGMVLTIRYDDTGETETLLLGRPCPEDAGIKAYSM 113 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEIL 153 +SP+ RA+ G GD PGG ++ +L Sbjct: 114 ASPLGRAIAGARPGDQRFYAIPGGTGRSVTVL 145 >gi|327187956|gb|EGE55188.1| transcription elongation factor protein, GreA/GreB family [Rhizobium etli CNPAF512] Length = 160 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 VT G + EL++ + +A A D++E + A R+ Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 AQVM--------PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK GD + G + EI+ + Sbjct: 134 VARLLMGKAAGDAVE----SGGQELEIIAI 159 >gi|303239530|ref|ZP_07326056.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] gi|302592908|gb|EFL62630.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2] Length = 147 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 13/157 (8%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59 M K+ +T + ++ + L E E R + + EY + + E + L Sbjct: 1 MQKKLTLTQQAYENL---LAHLVDFE---------ERRKHIIMLYFPEYNSQRVEFEVLI 48 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + ++ L++++ D S + + + + + + + NY ++ + D + Sbjct: 49 DDYISALDDVVRNVSFSDKSGNDFPFVCLNSVIEVEDVENTETFNYMLILPEANDYGTNC 108 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++I SP+ +AL+ K+ G+ +SVN P G Y I + Sbjct: 109 ITILSPMGKALLCKKDGETVSVNTPSGVYRYRIKSIK 145 >gi|255035431|ref|YP_003086052.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM 18053] gi|254948187|gb|ACT92887.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM 18053] Length = 134 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 51/108 (47%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 Q A+ + N L + RA V++ + + I + V + E + + + IV Sbjct: 20 QFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVM 79 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++AD+ +SI +P+ ALIG G+ + P G + ++IL V + Sbjct: 80 PKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGIRRFKILDVWY 127 >gi|83716392|ref|YP_439713.1| nucleoside diphosphate kinase regulator [Burkholderia thailandensis E264] gi|257142852|ref|ZP_05591114.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis E264] gi|83650217|gb|ABC34281.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis E264] Length = 132 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP+ Sbjct: 33 LLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGWLNVFSPVGM 92 Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G G+ + V PGG + T +I+++++ Sbjct: 93 ALLGARRGERVKVTLPGGTDATLKIVEIVY 122 >gi|86358113|ref|YP_470005.1| transcription elongation factor regulatory protein [Rhizobium etli CFN 42] gi|86282215|gb|ABC91278.1| transcription elongation factor protein [Rhizobium etli CFN 42] Length = 160 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%) Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---------AELENIITRAEVIDIST 80 + +A A A Y A ++++NE R L + A++I Sbjct: 31 VTEAGLRALELQFQQARAAYDTAIAIEDVNERRRQAANPLRDLRYLSARLRTAQLI-PDP 89 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 S D +AFG TV+ ++ G + Y++VG+ EAD ++G +S SP+A+ L+GK +GD++ Sbjct: 90 TSADVVAFGLTVTFT-RDDGRVQTYRLVGEDEADPKAGSISYVSPVAQLLMGKAVGDVVE 148 Query: 141 VNAPGGEKTYEILQVL 156 G + EI+ + Sbjct: 149 ----TGGQELEIIAIS 160 >gi|15806968|ref|NP_295693.1| transcription elongation factor [Deinococcus radiodurans R1] gi|6459759|gb|AAF11523.1|AE002035_6 transcription elongation factor [Deinococcus radiodurans R1] Length = 161 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T +GF+++++ L Q + + E +E+ + AK + E Sbjct: 4 TKQVRLTREGFERLEKALEQEQN-RLNEATRILQEQMETSADNEDTGLEDAKREKMNIEA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118 R+ ELE+ + RA +I+ +G R+ GA V L + S Q+V EA + G Sbjct: 63 RIDELEDTLARATLIE-DQENGGRVELGAIVQLSNETSKKDMKVQVVSAAEAAMVGGSIT 121 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +S SP+ R L+G++ G+ V GG++ Y++ + + Sbjct: 122 RISEESPVGRELMGRKKGESFVVTLEGGKQMKYKVKGIEY 161 >gi|295134424|ref|YP_003585100.1| GreA-like transcription elongation factor [Zunongwangia profunda SM-A87] gi|294982439|gb|ADF52904.1| GreA-like transcription elongation factor [Zunongwangia profunda SM-A87] Length = 166 Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G++ +++E R + E + +E+R + + +G++ Sbjct: 30 YVTPFGYEALEKEQRDLESERANTTSENETESR---------------RAKAVIDGKLKL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L A +I + D + FGA V L + + +QIVG EA+V+ ++ +P Sbjct: 75 LAERRASARIIHPNQQPDDEVRFGAHVKLKNHTANSIQQFQIVGVDEANVKQQKIAFVAP 134 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IA+A+ G ++G+ + EIL + + Sbjct: 135 IAKAVTGLKVGEKAEFKLGTETRILEILDITY 166 >gi|227820950|ref|YP_002824920.1| transcription elongation factor regulatory protein [Sinorhizobium fredii NGR234] gi|227339949|gb|ACP24167.1| putative transcription elongation factor [Sinorhizobium fredii NGR234] Length = 160 Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 20/150 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++ +LR + + S A A D +E QAA L++L Sbjct: 31 VTKAGLKALESQLRQAR--------EGYSAASAIEDANERRR-QAAGPLRDL-----RYF 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ SG+ +AFG+TV+ ++ G + Y+IVG+ EAD + G +S SP+ Sbjct: 77 AERVRTAQLV-PDPTSGETVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKLGSISYVSPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 AR L+GK G+++S+ G++ EI+ + Sbjct: 135 ARILLGKANGEVVSI----GDQELEIVAIS 160 >gi|188583529|ref|YP_001926974.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] gi|179347027|gb|ACB82439.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] Length = 154 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 25/151 (16%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G +I+ E+ + +E + A++ R Sbjct: 29 YVTPEGLARIEAEVARLE-----------AELSGLSPQQDKADHARLSRDLRYWSARKNS 77 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P Sbjct: 78 AEL---------VEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPATGSISYVAP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARAL GK +GD ++VN + +EI ++ Sbjct: 128 LARALTGKGVGDTVTVN----DHEFEIAEIR 154 >gi|307319133|ref|ZP_07598563.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306895240|gb|EFN25996.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] Length = 160 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G + EL + +AR D + + + E + + G + EL Sbjct: 31 VTETGLKAL--ELH-------------LQQAREAFDAT--STIEDVNERRRQSAGPLREL 73 Query: 67 ENIITRAEV--IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 R + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S S Sbjct: 74 RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+AR L+GK +GD+ SV G++ EIL + Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAIS 160 >gi|167578153|ref|ZP_02371027.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis TXDOH] gi|167616284|ref|ZP_02384919.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis Bt4] Length = 132 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP+ Sbjct: 33 LLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGRLNVFSPVGM 92 Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G G+ + V PGG + T +I+++++ Sbjct: 93 ALLGARRGERVKVTLPGGTDATLKIVEIVY 122 >gi|28493647|ref|NP_787808.1| transcription elongation factor [Tropheryma whipplei str. Twist] gi|28476689|gb|AAO44777.1| transcription elongation factor [Tropheryma whipplei str. Twist] Length = 172 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + ++ + + EL R I K I +AR+ GDL EN Y AAKE Q EGR+ Sbjct: 16 ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 75 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSI 122 +L++++ A V G + G V+ G ++ + + + A S Sbjct: 76 QQLQDLLRHARVGQAPKARG-VVEPGVVVTAR--IGGSERRFLLGNREIAHTSSLATYSE 132 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SS I +A++G + G I +P G IL+V Sbjct: 133 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 167 >gi|269137850|ref|YP_003294550.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202] gi|267983510|gb|ACY83339.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202] gi|304557903|gb|ADM40567.1| Regulator of nucleoside diphosphate kinase [Edwardsiella tarda FL6-60] Length = 136 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + A Q LNE + RA+++ + M D + Sbjct: 3 RPAIIINELDAERLDRLLERPAFAAQPVAQALNE--------ELDRAQLLAPAAMPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + N+ ++ +V D +S+ +PI AL+G +GD I P G Sbjct: 55 TMNSRVRFRDLNTNEEHVRTLVYPHLQDSAEDGLSVMAPIGAALLGLRVGDAIRWTLPNG 114 Query: 147 EKT-YEILQVLW 157 +T E+L +L+ Sbjct: 115 NQTHIEVLALLY 126 >gi|241205105|ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858995|gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 15/135 (11%) Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---------AELENIITRAEVIDIST 80 + +A +A Y AA ++++NE R L + A+++ S Sbjct: 31 VTEAGLKALELQFQQAREAYDAASPIEDVNERRRQAASPLRDLRYLTARLRTAQLM-PSP 89 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD++ Sbjct: 90 TSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDMVE 148 Query: 141 VNAPGGEKTYEILQV 155 G + EI+ + Sbjct: 149 ----TGGQELEIIAI 159 >gi|28572840|ref|NP_789620.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27] gi|28410973|emb|CAD67358.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27] Length = 162 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 + ++ + + EL R I K I +AR+ GDL EN Y AAKE Q EGR+ Sbjct: 6 ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 65 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSI 122 +L++++ A V G + G V+ G ++ + + + A S Sbjct: 66 QQLQDLLRHARVGQAPKARG-VVEPGVVVTAR--IGGSERRFLLGNREIAHTSSLATYSE 122 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SS I +A++G + G I +P G IL+V Sbjct: 123 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 157 >gi|16262532|ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium meliloti 1021] gi|307300722|ref|ZP_07580497.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|14523141|gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904256|gb|EFN34841.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 160 Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G + EL + +AR D + + + E + + G + EL Sbjct: 31 VTETGLKAL--ELH-------------LQQAREAFDAT--STIEDVNERRRQSAGPLREL 73 Query: 67 ENIITRAEV--IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 R + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S S Sbjct: 74 RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+AR L+GK +GD+ SV G++ EIL + Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAIS 160 >gi|300770814|ref|ZP_07080692.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33861] gi|300762371|gb|EFK59189.1| transcription elongation factor GreA [Sphingobacterium spiritivorum ATCC 33861] Length = 79 Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 48/78 (61%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 S + ++ + V + K +G + YQ+V + EAD++SG +S+ SPIA+ L+GK GD Sbjct: 1 SKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGLLGKSKGDT 60 Query: 139 ISVNAPGGEKTYEILQVL 156 ++ P G+ +EI+++ Sbjct: 61 ATIEVPAGKIEFEIMEIS 78 >gi|218662438|ref|ZP_03518368.1| transcription elongation factor regulatory protein [Rhizobium etli IE4771] Length = 160 Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 20/149 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G + EL+++Q E I + + N R+ Sbjct: 31 VTEAGLKAL--ELQFQQAREAYDATNTIEDVNERRRQAANP-----LRDLRYLAARLRTA 83 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + S + +AFG TV+ ++ G + Y+IVG+ EAD ++G +S SP+ Sbjct: 84 QLM--------PYPTSVNVVAFGNTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+GK +GD + G + EI+ + Sbjct: 135 ARLLMGKAVGDAVE----AGGQELEIIAI 159 >gi|300023335|ref|YP_003755946.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525156|gb|ADJ23625.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] Length = 152 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 24/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G I+ E++ Q + ++ AR D + A A R+A Sbjct: 27 VTPEGLALIEGEIKRLQ--------EDLNAARESDDRNAIA---RASHDLRYWSQRLATA 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + +AFG+ V+L E++ G + ++IVG+ EAD G +S SP+ Sbjct: 76 E--------LQPPASDASVVAFGSRVTL-ERDDGRMQKFRIVGEDEADPAKGSISYVSPL 126 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+AL+GK GD + G EI+++ Sbjct: 127 AQALLGKAAGDTVK----AGSGEAEIIKIE 152 >gi|116252606|ref|YP_768444.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257254|emb|CAK08349.1| putative transcription elongation factor [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G + EL+++Q E I + + N R+ Sbjct: 31 VTEAGLKAL--ELQFQQAREAYDAASPIEDVNERRRQAANP-----LRDLRYLAARLRTA 83 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+ Sbjct: 84 QLM--------PAATSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AR L+GK +GD + G + EI+ + Sbjct: 135 ARLLMGKAVGDAVE----TGGQELEIIAI 159 >gi|134299378|ref|YP_001112874.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1] gi|134052078|gb|ABO50049.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1] Length = 137 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 30/157 (19%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M KI +TS +++++ IIK A + Sbjct: 1 MERKIYITSADKERLEK-----------LIIKEKEFNPASKEY----------------- 32 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + LE + A+V+ + D I + V L + ++ ++ Y +V +AD+ + Sbjct: 33 --LKSLEEELKLAQVVPSKEIPQDVITMNSKVLLKDLDADEELTYSLVYPADADLLEDKI 90 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SI +P+ A++G +GD+++ P G ++ +L+ Sbjct: 91 SILAPVGTAILGYRVGDVVNWKVPDGVVQLKVENILY 127 >gi|289810362|ref|ZP_06540991.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 65 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 46/65 (70%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 62 RMAEL 66 R+ ++ Sbjct: 61 RIKDI 65 >gi|116749867|ref|YP_846554.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] gi|116698931|gb|ABK18119.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans MPOB] Length = 141 Score = 81.0 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE + +AEV+ + D + + V + + ++G + Y +V EADV+ +S+ Sbjct: 37 LQVLEEELRKAEVVAARNIPRDTVTMNSKVRVKDLDTGIETIYHLVFPGEADVKQNRISV 96 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +PI ALIG +GD+I N P G K I ++L+ Sbjct: 97 LAPIGTALIGYAVGDVIQWNVPAGTKKLRIEEILY 131 >gi|34497951|ref|NP_902166.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum ATCC 12472] gi|34103806|gb|AAQ60167.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum ATCC 12472] Length = 134 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 D A E + GR LE + RA+V+D M + + ++V + G Sbjct: 13 DYDRLAALLENCEHDHPVAGR---LEAELERADVVDPQAMPSNVVTMNSSVRIR-LGDGQ 68 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +K +V ++AD + G +S+ +PI AL+G G + P G +L++ + Sbjct: 69 EKQLTLVYPRDADSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITY 124 >gi|91976219|ref|YP_568878.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisB5] gi|91682675|gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB5] Length = 160 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65 VT+ G ++ +L+ + A A+A D++E + Q R Sbjct: 31 VTAAGMKALEAQLQAAR--------DACEAAKAIEDVNE-------RRRQEAIPSRDARY 75 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A++I + D +AFG+TV+ + G + Y+IVG+ EAD + G +S SP Sbjct: 76 FATRVRTAQLI-ADPTTADVVAFGSTVTFKRAD-GRVQTYRIVGEDEADPKVGSISFVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK +GD+ A GE+ EI+ + Sbjct: 134 VARLLMGKAVGDV----AGAGEQELEIIAI 159 >gi|167565571|ref|ZP_02358487.1| regulator of nucleoside diphosphate kinase [Burkholderia oklahomensis EO147] Length = 132 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 51 AAKELQNLNEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A E R E+ + ++ RA++++ + + + + + + L+++ +G + IV Sbjct: 14 ARLERHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMTWTIVY 73 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 A+ + G +++ SP+ AL+G G+ + V PGG + T +I ++++ Sbjct: 74 PDAANFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122 >gi|192360518|ref|YP_001983831.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus Ueda107] gi|190686683|gb|ACE84361.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus Ueda107] Length = 180 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI-ITRAEVID 77 L + IS N++YQ +L N+ AE +I I RA ++ Sbjct: 48 LEKLKMVATTETSLVIS----------NSDYQRLVQLIEDNDSPAAEALDIEIGRATLVA 97 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + + D +A + V+ + +SG++K Q+V +A+V +SI SP+ ALIG +G Sbjct: 98 DAQLPADVVAMDSEVTFEDLDSGEQKTIQLVFPAQANVDQLKISILSPVGSALIGLRIGS 157 Query: 138 IISVNAPGGE-KTYEILQVL 156 I P G+ + +++ V Sbjct: 158 SIDWPVPQGKVRRLKVIAVK 177 >gi|262369483|ref|ZP_06062811.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] gi|262315551|gb|EEY96590.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] Length = 100 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSPI 126 + +ID S +I FGA V + + G++K +IVG D+ D +SI SP+ Sbjct: 3 KRLEELRIIDFSEEQAGKIYFGAWVEIEN-DEGEQKTLRIVGVDEIYDHHPQHISIDSPM 61 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ARAL+ K++ D I V P G+K + + + + Sbjct: 62 ARALLSKQVDDEIEVLTPTGKKHWYVNSIRY 92 >gi|229817907|ref|ZP_04448189.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM 20098] gi|229784807|gb|EEP20921.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM 20098] Length = 114 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 44 SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103 SEN Y AA+E Q +N+GR+ EL + A+++ + ++ G+ V+L +G +K Sbjct: 1 SENGGYHAAREAQRVNQGRIEELTFKLRHAKIL--TAPPAGKVGDGSLVTL--DMNGREK 56 Query: 104 NYQIVGDQEA-DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152 + + A ++S SPI A+ G ++GD +S AP G E + I Sbjct: 57 VFVLGSHDLAIATDQAIISPESPIGAAIYGAKVGDTVSYKAPNGREISVTI 107 >gi|331644106|ref|ZP_08345235.1| transcription elongation factor GreB (Transcript cleavage factorgreB) [Escherichia coli H736] gi|331036400|gb|EGI08626.1| transcription elongation factor GreB (Transcript cleavage factorgreB) [Escherichia coli H736] Length = 114 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 FGA V + + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P G Sbjct: 42 FFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAG 100 Query: 147 EKTYEILQVLWI 158 E ++ + + ++ Sbjct: 101 EASWYVNAIEYV 112 >gi|316932410|ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315600124|gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 134 Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%) Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 + +RP I +A G L+E A Y A E R + V S Sbjct: 6 RTQRPPITLRSRDAERLGQLAEVAAQRYPATAEFLAGEVARAS----------VAPDSAP 55 Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + + ++ + +G +K+ +V EADV++G +SI +PI ALIG +G IS Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISF 115 Query: 142 NAPGGE-KTYEILQVL 156 P GE ++ +L V Sbjct: 116 ETPSGERRSLTVLSVS 131 >gi|170740603|ref|YP_001769258.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46] gi|168194877|gb|ACA16824.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46] Length = 153 Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 26/150 (17%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G I+ EL +E A + + ++L+ R + Sbjct: 30 VTPQGLALIEAELERLH-----------AEHAALSPDDKAGLARTNRDLRYWTARRNS-- 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A+VI+ + GD + FG+T +VE+ G ++ Y++VG+ EAD G ++ +P+ Sbjct: 77 ------AQVIEPTP--GDTVHFGST-VVVEREDGSRQTYRVVGEDEADPARGSIAYVAPL 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 ARAL GK GD++ V + EI++V Sbjct: 128 ARALTGKLAGDVVRVA----DHDVEIIEVR 153 >gi|218680300|ref|ZP_03528197.1| transcription elongation factor regulatory protein [Rhizobium etli CIAT 894] Length = 160 Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRMAE 65 VT G + EL++ + +A A D++E + + R+ Sbjct: 31 VTEAGLRAL--ELQF------QQAREAYDAANTIDDVNERRRQAAGPLRDLRYLKARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP Sbjct: 83 AQLM--------ADASSTDAVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK +GD+ G + EI+ + Sbjct: 134 VARLLMGKAVGDVAE----TGGQELEIIAI 159 >gi|254563199|ref|YP_003070294.1| GreA/GreB family transcription elongation factor [Methylobacterium extorquens DM4] gi|254270477|emb|CAX26477.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens DM4] Length = 154 Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ E+ + +E + A++ R Sbjct: 30 VTPEGLAQIEAEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E I GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ Sbjct: 79 EPI---------EAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+AL GK +GD ++VN + +EI ++ Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154 >gi|295677010|ref|YP_003605534.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] gi|295436853|gb|ADG16023.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002] Length = 134 Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 7/117 (5%) Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 D++ +Y AA L++++ RA ++D + D + + +L++ SG+ Sbjct: 14 DVTRLEKYAAANAKLQH------MLDDVLERAVIVDSHDIPADVVTMNSQATLIDTASGE 67 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 + + +V AD G +++ SP AL+G G+ I P G++ +I ++L+ Sbjct: 68 QMTWTVVYPPNADFAQGRLNVFSPAGLALLGARRGESIRFTPPSGDQQVLKIDKILY 124 >gi|218532092|ref|YP_002422908.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218524395|gb|ACK84980.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 154 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ E+ + +E + A++ R Sbjct: 30 VTPEGLAQIEAEVARLE-----------AELSGLSPQQDKADHIRVSRDLRYWTARKNSA 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+AL GK +GD ++VN + +EI ++ Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154 >gi|163853276|ref|YP_001641319.1| transcription elongation factor GreA/GreB domain-containing protein [Methylobacterium extorquens PA1] gi|163664881|gb|ABY32248.1| transcription elongation factor GreA/GreB domain protein [Methylobacterium extorquens PA1] Length = 154 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ E+ + +E + A++ R Sbjct: 30 VTPEGLTQIEAEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A+AL GK +GD ++VN + +EI ++ Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154 >gi|118594647|ref|ZP_01551994.1| transcription elongation factor, putative [Methylophilales bacterium HTCC2181] gi|118440425|gb|EAV47052.1| transcription elongation factor, putative [Methylophilales bacterium HTCC2181] Length = 166 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 16/152 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T G +++ L E + ++ + +K+ + E + Sbjct: 29 YITPNGLKQLKNILDTLDAERQTLMLL---------------DDSMSKQKKMRIERDIRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + I A +I + +++ FGA + L ++ G+ ++Y+IVG+ EAD+ +S SP Sbjct: 74 YASRIKTAILIHPDKQAENKVLFGALIELEDEK-GETESYEIVGEDEADLALRKISYVSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A++++G LGD +++ P T I + + Sbjct: 133 LAKSVMGNSLGDEVTLIKPTATVTLTIKNITY 164 >gi|239831415|ref|ZP_04679744.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG 3301] gi|239823682|gb|EEQ95250.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG 3301] Length = 157 Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G I+ E+ Q+E + E A +S + Y A+ Sbjct: 29 VTPTGLKMIEDEIARLQRELADANVA--GERSAVARISRDLRYWTARRENAEL------- 79 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD +G +S +P+ Sbjct: 80 ----------SVPAADSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPV 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 A L GK +GD++ +N +EIL Sbjct: 130 AILLFGKPVGDVVKIN----NVEWEILS 153 >gi|261341234|ref|ZP_05969092.1| regulator of nucleoside diphosphate kinase [Enterobacter cancerogenus ATCC 35316] gi|288316534|gb|EFC55472.1| regulator of nucleoside diphosphate kinase [Enterobacter cancerogenus ATCC 35316] Length = 136 Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP+II +A L E EY + LNE + RA++ +M D + Sbjct: 3 RPKIIINELDAERIDRLLEKPEYASLPVADALNE--------ELDRAQMCTPESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V+ +G++ +V + + +S+ +P+ AL+G GD I + PGG Sbjct: 55 TMNSQVTFRNLTTGEELTRTLVYPAQMTDSATQLSVLAPVGAALLGLRTGDTIHWDLPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L +L+ Sbjct: 115 ASTHLEVLALLY 126 >gi|91202773|emb|CAJ72412.1| similar to regulator of nucleoside diphosphate kinase [Candidatus Kuenenia stuttgartiensis] Length = 139 Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 56/106 (52%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 A+E + +A L + RAEV+ + D + + V L + ++ +K Y +V + Sbjct: 24 AEEFGGQDRKDLASLAEELERAEVVSSKDVPADVVTMNSKVVLRDLSTSEKMTYVLVFPK 83 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A++ +G +S+ +P+ A++G GD++ + P G + I VL+ Sbjct: 84 DANIAAGAISVLAPVGTAILGYAKGDVVEWSVPSGVRRIRIDDVLY 129 >gi|169830342|ref|YP_001716324.1| GreA/GreB family elongation factor [Candidatus Desulforudis audaxviator MP104C] gi|169637186|gb|ACA58692.1| GreA/GreB family elongation factor [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 6/157 (3%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M I +++ + +L + ++ + + A A G ++ E++ + Sbjct: 1 MASIIELSNHAYKYFTGQLAQMEAQKL-ALFEDFFTAYAPGVPIDD-----RTEVRLFLD 54 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + + ++ RA V++ G + + + + G + +++V E + +G V Sbjct: 55 DYLNRVRELLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGHV 114 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SP+ R L+ KE G +++V APGG Y ++ V + Sbjct: 115 SFLSPVGRGLLLKEPGQVLAVQAPGGTFRYRVVSVTY 151 >gi|39933943|ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] gi|192289362|ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] gi|39647790|emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] gi|192283111|gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] Length = 134 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%) Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 + +RP I +A G L+E A Y A + + RA V Sbjct: 6 RTQRPPITIRSRDAERLGQLAEAAAQRYPATADFLA----------GEVARANVAPDHDP 55 Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + + ++ + +G +K+ +V EADV++G +S+ +PI ALIG +G IS Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSISF 115 Query: 142 NAPGGE-KTYEILQVL 156 P GE ++ +L V Sbjct: 116 ETPSGERRSLTVLSVS 131 >gi|218673855|ref|ZP_03523524.1| transcription elongation factor regulatory protein [Rhizobium etli GR56] Length = 160 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRW-RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++ + + R+ + II+ ++E R R+ Sbjct: 31 VTEAGLKALELQFQQAREAYDAASIIEDVNERRRQTANP--------LRDLRYLAARLRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + S D +AFG+TV+ ++ G + Y+IVG+ EA+ ++ +S SP Sbjct: 83 AQLM--------PDPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEAEPKAASISYLSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK GD + V G EI+ + Sbjct: 134 VARLLMGKAAGDAVEV----GGHELEIIAI 159 >gi|256426014|ref|YP_003126667.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588] gi|256040922|gb|ACU64466.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588] Length = 131 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA ++D ++ I + VS+ E NSG +++IV +AD++ +SI +P+ Sbjct: 42 YELNRAVIVDNESLPVGTIRLNSLVSVKEVNSGKVTDFRIVMPIDADIKQKKISILAPLG 101 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 ALIG GD + P G K + +L V Sbjct: 102 AALIGFRKGDEVEWKMPAGVKRFTVLNVQ 130 >gi|53721904|ref|YP_110889.1| transcription elongation factor [Burkholderia pseudomallei K96243] gi|52212318|emb|CAH38342.1| putative transcription elongation factor [Burkholderia pseudomallei K96243] Length = 136 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 23 QQEERPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 + R RI + + AR N YQ L+ ++ RA++++ + Sbjct: 2 ETVMRNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNK 48 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + + + + + L+++ +G + + IV A+ + G +++ SP+ AL+G G+ + Sbjct: 49 IQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVK 108 Query: 141 VNAPGG-EKTYEILQVLW 157 V PGG + T +I+++++ Sbjct: 109 VTLPGGADATLKIVEIVY 126 >gi|17987660|ref|NP_540294.1| transcription elongation factor GREB [Brucella melitensis bv. 1 str. 16M] gi|148560110|ref|YP_001258556.1| transcription elongation factor GreA domain-containing protein [Brucella ovis ATCC 25840] gi|163842833|ref|YP_001627237.1| transcription elongation factor GreA [Brucella suis ATCC 23445] gi|225627062|ref|ZP_03785100.1| Transcription elongation factor greA [Brucella ceti str. Cudo] gi|225852085|ref|YP_002732318.1| Transcription elongation factor greA [Brucella melitensis ATCC 23457] gi|254693324|ref|ZP_05155152.1| Transcription elongation factor greA [Brucella abortus bv. 3 str. Tulya] gi|254701352|ref|ZP_05163180.1| Transcription elongation factor greA [Brucella suis bv. 5 str. 513] gi|254707727|ref|ZP_05169555.1| Transcription elongation factor greA [Brucella pinnipedialis M163/99/10] gi|254709691|ref|ZP_05171502.1| Transcription elongation factor greA [Brucella pinnipedialis B2/94] gi|254712888|ref|ZP_05174699.1| Transcription elongation factor greA [Brucella ceti M644/93/1] gi|254716758|ref|ZP_05178569.1| Transcription elongation factor greA [Brucella ceti M13/05/1] gi|256031182|ref|ZP_05444796.1| Transcription elongation factor greA [Brucella pinnipedialis M292/94/1] gi|256044265|ref|ZP_05447169.1| Transcription elongation factor greA [Brucella melitensis bv. 1 str. Rev.1] gi|256060689|ref|ZP_05450853.1| Transcription elongation factor greA [Brucella neotomae 5K33] gi|256113099|ref|ZP_05453976.1| Transcription elongation factor greA [Brucella melitensis bv. 3 str. Ether] gi|256159272|ref|ZP_05457075.1| Transcription elongation factor greA [Brucella ceti M490/95/1] gi|256254589|ref|ZP_05460125.1| Transcription elongation factor greA [Brucella ceti B1/94] gi|256264405|ref|ZP_05466937.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 2 str. 63/9] gi|256368997|ref|YP_003106503.1| transcription elongation factor GreA domain protein [Brucella microti CCM 4915] gi|260168317|ref|ZP_05755128.1| transcription elongation factor GreA domain protein [Brucella sp. F5/99] gi|260563619|ref|ZP_05834105.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|261213571|ref|ZP_05927852.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str. Tulya] gi|261218555|ref|ZP_05932836.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1] gi|261221763|ref|ZP_05936044.1| GreA/GreB family elongation factor [Brucella ceti B1/94] gi|261315220|ref|ZP_05954417.1| GreA/GreB family elongation factor [Brucella pinnipedialis M163/99/10] gi|261317221|ref|ZP_05956418.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94] gi|261320596|ref|ZP_05959793.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1] gi|261324679|ref|ZP_05963876.1| GreA/GreB family elongation factor [Brucella neotomae 5K33] gi|261751889|ref|ZP_05995598.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513] gi|261757777|ref|ZP_06001486.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|265988260|ref|ZP_06100817.1| GreA/GreB family elongation factor [Brucella pinnipedialis M292/94/1] gi|265990676|ref|ZP_06103233.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str. Rev.1] gi|265994508|ref|ZP_06107065.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str. Ether] gi|265997727|ref|ZP_06110284.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1] gi|294851925|ref|ZP_06792598.1| transcription elongation factor regulatory protein [Brucella sp. NVSL 07-0026] gi|17983373|gb|AAL52558.1| transcription elongation factor greb [Brucella melitensis bv. 1 str. 16M] gi|148371367|gb|ABQ61346.1| transcription elongation factor GreA domain protein [Brucella ovis ATCC 25840] gi|163673556|gb|ABY37667.1| Transcription elongation factor greA [Brucella suis ATCC 23445] gi|225617897|gb|EEH14941.1| Transcription elongation factor greA [Brucella ceti str. Cudo] gi|225640450|gb|ACO00364.1| Transcription elongation factor greA [Brucella melitensis ATCC 23457] gi|255999155|gb|ACU47554.1| transcription elongation factor GreA domain protein [Brucella microti CCM 4915] gi|260153635|gb|EEW88727.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|260915178|gb|EEX82039.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str. Tulya] gi|260920347|gb|EEX87000.1| GreA/GreB family elongation factor [Brucella ceti B1/94] gi|260923644|gb|EEX90212.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1] gi|261293286|gb|EEX96782.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1] gi|261296444|gb|EEX99940.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94] gi|261300659|gb|EEY04156.1| GreA/GreB family elongation factor [Brucella neotomae 5K33] gi|261304246|gb|EEY07743.1| GreA/GreB family elongation factor [Brucella pinnipedialis M163/99/10] gi|261737761|gb|EEY25757.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|261741642|gb|EEY29568.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513] gi|262552195|gb|EEZ08185.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1] gi|262765621|gb|EEZ11410.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str. Ether] gi|263001460|gb|EEZ14035.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str. Rev.1] gi|263094699|gb|EEZ18478.1| prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 2 str. 63/9] gi|264660457|gb|EEZ30718.1| GreA/GreB family elongation factor [Brucella pinnipedialis M292/94/1] gi|294820514|gb|EFG37513.1| transcription elongation factor regulatory protein [Brucella sp. NVSL 07-0026] gi|326408580|gb|ADZ65645.1| Transcription elongation factor greA [Brucella melitensis M28] gi|326538299|gb|ADZ86514.1| transcription elongation factor greA [Brucella melitensis M5-90] Length = 156 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|306842173|ref|ZP_07474842.1| transcription elongation factor GREB [Brucella sp. BO2] gi|306287760|gb|EFM59191.1| transcription elongation factor GREB [Brucella sp. BO2] Length = 156 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWTARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|147676876|ref|YP_001211091.1| hypothetical protein PTH_0541 [Pelotomaculum thermopropionicum SI] gi|146272973|dbj|BAF58722.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 150 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 53/107 (49%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 + E +NL E + L+ +I A I+ + G+ V + + + Y IV Sbjct: 38 KERNEFENLIENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVN 97 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++V+ G +S SP+ ++L+ K++GD + V APGG Y+I + Sbjct: 98 PFYSEVREGHISFLSPVGKSLLLKKVGDEVEVKAPGGVFRYKIKSIR 144 >gi|323526690|ref|YP_004228843.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001] gi|323383692|gb|ADX55783.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001] Length = 139 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N L++++ RA ++D + + + + +LV++ SG++ + +V +AD Sbjct: 28 GANARFQEMLDDVLERAVIVDSRDIPANVVTMNSQATLVDETSGEEMTWTVVYPPDADFT 87 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G+ I P G EK ++ ++L+ Sbjct: 88 HGRLNVFSPVGLALLGAKRGEQIRFMPPSGDEKVLKLAKILY 129 >gi|325109624|ref|YP_004270692.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM 5305] gi|324969892|gb|ADY60670.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM 5305] Length = 138 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 54/95 (56%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L + A+V++ + + + +T+ + E + + + Y +V + AD+ G +S+ Sbjct: 35 LQSLRGELDIAQVVNSEEVPPNVVTMNSTIRMREVRTREMETYTLVYPERADIAEGKLSV 94 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +PI A++G ++GDI+ N PGG ++I ++++ Sbjct: 95 LAPIGTAILGYQVGDIVEWNVPGGTIRFKIEELVF 129 >gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae ATCC 10712] Length = 155 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 6 PVTSKGFDKIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 P+++ + +++EL + E E + GD ++ A+ + R+ Sbjct: 7 PISAAAREALERELDELRTEREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDRRID 66 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + A V D + G+TV++ ++ G + QI G+ A + + +V+ S Sbjct: 67 ELHGRLREAAV--AGAPRTDAVGVGSTVTVRFED-GTETTVQI-GEVAAVLDATMVTADS 122 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154 P+ AL+G GD ++ P G T ++ Sbjct: 123 PLGGALLGHRAGDTVTYVTPQGRTTAVVVS 152 >gi|167572677|ref|ZP_02365551.1| regulator of nucleoside diphosphate kinase [Burkholderia oklahomensis C6786] Length = 132 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 51 AAKELQNLNEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A E R E+ + ++ RA++++ + + + + + + L+++ +G + IV Sbjct: 14 ARLERHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMAWTIVY 73 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 A+ + G +++ SP+ AL+G G+ + V PGG + T +I ++++ Sbjct: 74 PDAANFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122 >gi|332716346|ref|YP_004443812.1| Transcription elongation factor [Agrobacterium sp. H13-3] gi|325063031|gb|ADY66721.1| Transcription elongation factor [Agrobacterium sp. H13-3] Length = 163 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 20/150 (13%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G ++Q+L+ + +A A A D++E A + Sbjct: 34 VTEAGLKALEQQLQLAR--------EACETANAVEDVNERRRLSANP------LRDIRYF 79 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+++ S + +AFG+ V+ ++ G + ++IVG+ EAD +G +S SP+ Sbjct: 80 AERVRTAQLM-PSPPADGTVAFGSVVTFS-RDDGRTQRFRIVGEDEADPANGSMSYVSPV 137 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A L+GK GD++S+ G K EI++V Sbjct: 138 AGLLMGKSAGDVVSL----GGKEIEIIEVT 163 >gi|126458551|ref|YP_001075250.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106a] gi|134279304|ref|ZP_01766017.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 305] gi|167723223|ref|ZP_02406459.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei DM98] gi|167742194|ref|ZP_02414968.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 14] gi|167849216|ref|ZP_02474724.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei B7210] gi|167906159|ref|ZP_02493364.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei NCTC 13177] gi|167914483|ref|ZP_02501574.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 112] gi|217418762|ref|ZP_03450269.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 576] gi|237508824|ref|ZP_04521539.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei MSHR346] gi|242312653|ref|ZP_04811670.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106b] gi|254300234|ref|ZP_04967680.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 406e] gi|126232319|gb|ABN95732.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106a] gi|134249723|gb|EBA49804.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 305] gi|157810014|gb|EDO87184.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 406e] gi|217398066|gb|EEC38081.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 576] gi|235001029|gb|EEP50453.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei MSHR346] gi|242135892|gb|EES22295.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1106b] Length = 132 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 16/134 (11%) Query: 27 RPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 R RI + + AR N YQ L+ ++ RA++++ + + + Sbjct: 2 RNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNKIQAN 48 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + + + L+++ +G + IV A+ + G +++ SP+ AL+G G+ + V P Sbjct: 49 VVTMNSQIKLLDETAGQDMAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLP 108 Query: 145 GG-EKTYEILQVLW 157 GG + T +I+++++ Sbjct: 109 GGADATLKIVEIVY 122 >gi|170750231|ref|YP_001756491.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans JCM 2831] gi|170656753|gb|ACB25808.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans JCM 2831] Length = 157 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ E+ ++E A D ++ AE R Sbjct: 30 VTPEGLAQIEAEVARLEKEV------------ASLDPADKAEDSRIGRDLRYWAARKNTA 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS---GDKKNYQIVGDQEADVQSGLVSIS 123 ++++ GD + FG+TV++V ++ ++ ++IVG+ EAD G +S Sbjct: 78 -------QLVEPK--GGDTVQFGSTVTVVREDESGKETRQTFRIVGEDEADPHKGSISYV 128 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+ARA+ GK +GD++ VN E+L++ Sbjct: 129 APLARAITGKTIGDVVEVNG----HEVEVLEIR 157 >gi|207111191|ref|ZP_03245353.1| transcription elongation factor GreA [Helicobacter pylori HPKX_438_CA4C1] Length = 60 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 38/59 (64%) Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++ + +Y IVG E+D GL+S SPIA++LIGK GD +S+ P GE +EIL + Sbjct: 1 LDNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDI 59 >gi|325277076|ref|ZP_08142731.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] gi|324097783|gb|EGB95974.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] Length = 165 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 17/151 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT+ G ++Q+ ++E A + + K+ E + Sbjct: 29 YVTASGLRQLQE---------------RVAELNALRSDLQAQGERVDKQRLADTERDLRY 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + A+V+ +T S ++ G+ V V+ ++VG+ EAD GL++ SP Sbjct: 74 FSARVQSAQVVPPAT-SHSKVQIGSRVRFVDAQD-QAHEVRLVGEDEADAGRGLINWGSP 131 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + RAL+G GD + P GE E+ V+ Sbjct: 132 LGRALLGAGPGDEVVWQRPVGELVIEVTDVI 162 >gi|182414436|ref|YP_001819502.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177841650|gb|ACB75902.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 143 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ++L + ++R V+D + + I G+TV + + SG+ + Y +V ++A+V + +S+ Sbjct: 30 SQLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIETYTLVLPEQANVDARKLSVL 89 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152 +PI A+IG G ++ + PGG + I Sbjct: 90 APIGTAVIGCLQGAEVAWSTPGGTRRLRI 118 >gi|299783423|gb|ADJ41421.1| Transcription elongation factor greA (Transcript cleavage factor greA) [Lactobacillus fermentum CECT 5716] Length = 69 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G ++ E + ++Y IVG+ E+D SG +S SP+A+ L+G ++GD + + P G Sbjct: 1 MGREITFQELPDEEPESYTIVGESESDPLSGKISNESPMAKGLLGHKVGDTVEIEIPNGS 60 Query: 148 KTYEILQVL 156 +IL V Sbjct: 61 MKVKILSVK 69 >gi|307069596|ref|YP_003878073.1| putative transcription elongation factor GreA [Candidatus Zinderia insecticola CARI] gi|306482856|gb|ADM89727.1| putative transcription elongation factor GreA [Candidatus Zinderia insecticola CARI] Length = 157 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 2/137 (1%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G+ K+ E + ++ +IK I AR+ GDLSEN++++ AKE + + E ++ Sbjct: 2 KNLITKNGY-KLFIEKINNFKNKKKNLIKEIEIARSNGDLSENSDFKIAKEKKYILEKKI 60 Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 LE I ++ID + + D+I F + L + K QIVGD E++ + +SI Sbjct: 61 LILEKKINNFKIIDPLYIKNKDKIFFSCKLKLFCYLNKKKIKLQIVGDCESNFKKNKISI 120 Query: 123 SSPIARALIGKELGDII 139 S +++ LI K++ D I Sbjct: 121 LSKLSKVLIKKKINDKI 137 >gi|332557443|ref|ZP_08411765.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N] gi|332275155|gb|EGJ20470.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N] Length = 164 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +Q L + RA D + AA+ E R+ Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A ++D +T D +AFG V++ + +G + ++I G+ EA + ++ +P+ Sbjct: 77 ----ASAILVDPATQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+G LG+ + P GE T + + Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160 >gi|159185796|ref|NP_357050.2| transcription elongation factor regulatory protein [Agrobacterium tumefaciens str. C58] gi|159140930|gb|AAK89835.2| transcription elongation factor [Agrobacterium tumefaciens str. C58] Length = 160 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65 VT G ++Q+L+ + +A A A D++E A+ R+ Sbjct: 31 VTQAGLKALEQQLQLAR--------QACEAANAIEDINERRRLSASPLRDMRYFAERVRT 82 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + + + +AFG+ V+ ++ G + ++IVG+ EAD +G +S SP Sbjct: 83 AQLM--------PDPQADGVVAFGSLVTFS-RDDGRTQRFRIVGEDEADPAAGTMSYVSP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155 +AR L+GK +GD++S+ G + EI+ V Sbjct: 134 VARVLMGKTIGDVVSL---AG-REIEIIDV 159 >gi|118469742|ref|YP_890510.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] gi|118171029|gb|ABK71925.1| transcription elongation factor GreA [Mycobacterium smegmatis str. MC2 155] Length = 157 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 15/146 (10%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 +I ++ + +++QQEL + + A D EN +Q + R Sbjct: 5 QRIWMSPQAHERLQQELSTLR---------ELIATEAASDSDEN-----QVAVQRARQAR 50 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ++ +++ AEV + G G +++ S D + + + + S+ Sbjct: 51 IQQIHDLLLHAEVGETPPNDG-VAEPGMVLTVRWDGSDDTETFLLGVRGAEYGDLEVYSV 109 Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148 SP+ A++G G+ P G + Sbjct: 110 QSPLGSAILGARPGEHREYETPTGAR 135 >gi|312602260|ref|YP_004022105.1| regulator of nucleoside diphosphate kinase [Burkholderia rhizoxinica HKI 454] gi|312169574|emb|CBW76586.1| Regulator of nucleoside diphosphate kinase [Burkholderia rhizoxinica HKI 454] Length = 195 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 1/98 (1%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 G L+ ++ RA V++ + + + +TV+L +SG++ + +V AD G + Sbjct: 88 GYQTMLDALLERAAVVEATDIDPSVVTMNSTVTLSNPSSGERMTWTVVYPPNADFSQGRL 147 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 ++ SP+ AL+G GD + V P G +T ++ Q+++ Sbjct: 148 NVFSPVGLALLGATPGDELRVTPPSGAPQTLKVEQIVF 185 >gi|23501445|ref|NP_697572.1| transcription elongation factor GreA domain-containing protein [Brucella suis 1330] gi|161618529|ref|YP_001592416.1| transcription elongation factor GreA [Brucella canis ATCC 23365] gi|254703897|ref|ZP_05165725.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686] gi|261754547|ref|ZP_05998256.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686] gi|23347347|gb|AAN29487.1| transcription elongation factor GreA domain protein [Brucella suis 1330] gi|161335340|gb|ABX61645.1| Transcription elongation factor greA [Brucella canis ATCC 23365] gi|261744300|gb|EEY32226.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686] Length = 156 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|53717174|ref|YP_105968.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 23344] gi|67643290|ref|ZP_00442037.1| transcription elongation factor [Burkholderia mallei GB8 horse 4] gi|76817365|ref|YP_337627.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710b] gi|121598026|ref|YP_989947.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei SAVP1] gi|124381514|ref|YP_001024430.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10229] gi|126445041|ref|YP_001062285.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 668] gi|126447434|ref|YP_001078147.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10247] gi|167000163|ref|ZP_02265983.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei PRL-20] gi|167819370|ref|ZP_02451050.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 91] gi|167827743|ref|ZP_02459214.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 9] gi|167897815|ref|ZP_02485217.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei 7894] gi|167922382|ref|ZP_02509473.1| putative nucleoside diphosphate kinase regulator [Burkholderia pseudomallei BCC215] gi|226197683|ref|ZP_03793258.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pakistan 9] gi|254174295|ref|ZP_04880957.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 10399] gi|254183333|ref|ZP_04889925.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1655] gi|254189966|ref|ZP_04896475.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pasteur 52237] gi|254193144|ref|ZP_04899579.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei S13] gi|254200813|ref|ZP_04907178.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei FMH] gi|254204783|ref|ZP_04911136.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei JHU] gi|254265246|ref|ZP_04956111.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710a] gi|254357032|ref|ZP_04973307.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei 2002721280] gi|52423144|gb|AAU46714.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 23344] gi|76581838|gb|ABA51312.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710b] gi|121225824|gb|ABM49355.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei SAVP1] gi|124289534|gb|ABM98803.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10229] gi|126224532|gb|ABN88037.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 668] gi|126240288|gb|ABO03400.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei NCTC 10247] gi|147748425|gb|EDK55500.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei FMH] gi|147754369|gb|EDK61433.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei JHU] gi|148026059|gb|EDK84182.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei 2002721280] gi|157937643|gb|EDO93313.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pasteur 52237] gi|160695341|gb|EDP85311.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei ATCC 10399] gi|169649898|gb|EDS82591.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei S13] gi|184213866|gb|EDU10909.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1655] gi|225930292|gb|EEH26304.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei Pakistan 9] gi|238524601|gb|EEP88033.1| transcription elongation factor [Burkholderia mallei GB8 horse 4] gi|243063816|gb|EES46002.1| putative nucleoside diphosphate kinase regulator [Burkholderia mallei PRL-20] gi|254216248|gb|EET05633.1| regulator of nucleoside diphosphate kinase [Burkholderia pseudomallei 1710a] Length = 132 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 16/134 (11%) Query: 27 RPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 R RI + + AR N YQ L+ ++ RA++++ + + + Sbjct: 2 RNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNKIQAN 48 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + + + L+++ +G + + IV A+ + G +++ SP+ AL+G G+ + V P Sbjct: 49 VVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLP 108 Query: 145 GG-EKTYEILQVLW 157 GG + T +I+++++ Sbjct: 109 GGADATLKIVEIVY 122 >gi|221638413|ref|YP_002524675.1| transcription elongation factor [Rhodobacter sphaeroides KD131] gi|221159194|gb|ACM00174.1| Transcription elongation factor [Rhodobacter sphaeroides KD131] Length = 164 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +Q L + RA D + AA+ E R+ Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A ++D + D +AFG V++ + +G + ++I G+ EA + ++ +P+ Sbjct: 77 ----ASAILVDPAAQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+G LG+ + P GE T + + Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160 >gi|154499214|ref|ZP_02037592.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC 29799] gi|150272054|gb|EDM99280.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC 29799] Length = 163 Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 5/144 (3%) Query: 15 IQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++ EL + +E + A A GD SENAE+Q A + + L N + Sbjct: 23 LRTELESVQLRLKEEQDAAQR---ASAMGDRSENAEWQIANDNIARYTVSIMSLVNTLDT 79 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132 + S ++ G+T+ +V++ +I + + G +S ++P+ A++G Sbjct: 80 YKKFSASYTPTGKVMVGSTLKVVDRRHNSTLYIKIYPAGLGNAKIGAISTATPLGSAVLG 139 Query: 133 KELGDIISVNAPGGEKTYEILQVL 156 K G + V AP G+ Y I +VL Sbjct: 140 KTAGTEVIVKAPLGDIPYYIEEVL 163 >gi|77462558|ref|YP_352062.1| putative transcription elongation factor [Rhodobacter sphaeroides 2.4.1] gi|126461492|ref|YP_001042606.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] gi|77386976|gb|ABA78161.1| putative transcription elongation factor [Rhodobacter sphaeroides 2.4.1] gi|126103156|gb|ABN75834.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] Length = 164 Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +Q L + RA D + AA+ E R+ Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A ++D + D +AFG V++ + +G + ++I G+ EA + ++ +P+ Sbjct: 77 ----ASAILVDPAAQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+G LG+ + P GE T + + Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160 >gi|306845170|ref|ZP_07477746.1| transcription elongation factor GREB [Brucella sp. BO1] gi|306274329|gb|EFM56136.1| transcription elongation factor GREB [Brucella sp. BO1] Length = 156 Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTPAGLKQIDDELVRLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPGSDVVRFGMTVELENLDDGSTRCWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|260566855|ref|ZP_05837325.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260156373|gb|EEW91453.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] Length = 156 Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTPAGLKQIDDELARLQHDLSEANIA--GERSAVARISRDLRYWMARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|255596472|ref|XP_002536547.1| Transcription elongation factor greA, putative [Ricinus communis] gi|223519331|gb|EEF25837.1| Transcription elongation factor greA, putative [Ricinus communis] Length = 196 Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 22/151 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65 VT G ++ +L+ + KA A A D++E + Q R Sbjct: 67 VTEAGLKALELQLQDAR--------KAYEAASAIEDINE-------RRRQTAIPLRDARY 111 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + AEV+ + S + + FG+TV+ + G + Y+IVG+ EAD ++G +S SP Sbjct: 112 FAERVRTAEVM-PAPASSEVVVFGSTVTYS-REDGRVQKYRIVGEDEADPKAGSISYVSP 169 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AR L+GK +GDI+++ G++ EI + Sbjct: 170 VARLLMGKTVGDILTL----GKEELEITAIE 196 >gi|62289525|ref|YP_221318.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82699455|ref|YP_414029.1| transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189023782|ref|YP_001934550.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237815022|ref|ZP_04594020.1| Transcription elongation factor greA [Brucella abortus str. 2308 A] gi|254688843|ref|ZP_05152097.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 6 str. 870] gi|254696973|ref|ZP_05158801.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 2 str. 86/8/59] gi|254729874|ref|ZP_05188452.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 4 str. 292] gi|256257090|ref|ZP_05462626.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus bv. 9 str. C68] gi|260545721|ref|ZP_05821462.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|260754325|ref|ZP_05866673.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str. 870] gi|260757544|ref|ZP_05869892.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str. 292] gi|260761369|ref|ZP_05873712.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str. 86/8/59] gi|260883350|ref|ZP_05894964.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str. C68] gi|297247937|ref|ZP_06931655.1| transcription elongation factor regulatory protein [Brucella abortus bv. 5 str. B3196] gi|62195657|gb|AAX73957.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941] gi|82615556|emb|CAJ10536.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189019354|gb|ACD72076.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237789859|gb|EEP64069.1| Transcription elongation factor greA [Brucella abortus str. 2308 A] gi|260097128|gb|EEW81003.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|260667862|gb|EEX54802.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str. 292] gi|260671801|gb|EEX58622.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str. 86/8/59] gi|260674433|gb|EEX61254.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str. 870] gi|260872878|gb|EEX79947.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str. C68] gi|297175106|gb|EFH34453.1| transcription elongation factor regulatory protein [Brucella abortus bv. 5 str. B3196] Length = 156 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTS G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTSAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|153010033|ref|YP_001371248.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] gi|151561921|gb|ABS15419.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] Length = 156 Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 39/156 (25%) Query: 7 VTSKGFDKIQQELRWRQQE--------ERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 VT G I+ E+ Q+E ER I + + R + ENAE Sbjct: 28 VTPTGLTMIEDEIARLQRELADANVAGERSAIARISRDLRYWTTRRENAE---------- 77 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + + D + FG TV L + G + + IVG+ EAD +G Sbjct: 78 -----------------LSVPVPDSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNG 120 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +S +P+A L GK +GD++ +N +EI+ Sbjct: 121 KISHVAPVAILLFGKPVGDVVKIN----NVEWEIVS 152 >gi|240140684|ref|YP_002965164.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens AM1] gi|240010661|gb|ACS41887.1| putative GreA/GreB family transcription elongation factor [Methylobacterium extorquens AM1] Length = 154 Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 25/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ E+ + +E + A++ R Sbjct: 30 VTPEGLAQIETEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPAAGSISYVAPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 A++L GK +GD ++VN + +EI ++ Sbjct: 129 AQSLTGKGVGDTVTVN----DHEFEIAEIR 154 >gi|149926906|ref|ZP_01915165.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105] gi|149824458|gb|EDM83676.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105] Length = 122 Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + AE I + D + + ++VE SG + +A+ G +S+ S Sbjct: 19 ELNAALDNAEFIKPQDIPADVVTMNSLFTIVETESGSTNKLMLCYPSDAEPAKGYISVLS 78 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154 P+ +L+G++ G + P GE+ + +++ Sbjct: 79 PVGASLLGRKAGTVAQWATPNGEQHFAVVK 108 >gi|86751649|ref|YP_488145.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] gi|86574677|gb|ABD09234.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] Length = 134 Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +RP I+ +A G L+E AA + L + RA V Sbjct: 8 QRPPIVLRSRDAERLGQLAE-----AAAQRHP---ATADFLAGEVARAAVTPDGEPLPGI 59 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + ++ ++++G +K +V +ADV++G +S+ +PI ALIG +G I+ P Sbjct: 60 VCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPIGAALIGLSVGQSITFETPS 119 Query: 146 GE-KTYEILQVL 156 GE ++ +L V Sbjct: 120 GERRSLTVLSVS 131 >gi|120405731|ref|YP_955560.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii PYR-1] gi|119958549|gb|ABM15554.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii PYR-1] Length = 159 Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D + +T + + +++EL P D A++ Sbjct: 4 ADYVWMTPQAREDLEKELADLMAVPNPAGTDETERTDQVVD------AWLARKE------ 51 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++ +++RA+ S G +++ ++GD + + + AD + + + Sbjct: 52 RIRQIHELLSRAD-HSTSPADDGIAEPGMVLTVRFDDTGDTETFLLGTRGTADPELEVYT 110 Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154 ++SP+ AL+G G+ S P G + +L Sbjct: 111 VASPLGSALLGAVPGEQRSFRLPNGSIQQVTVLA 144 >gi|118581250|ref|YP_902500.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] gi|118503960|gb|ABL00443.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] Length = 142 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 54/98 (55%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 + AK + + + ELE + RA+V+ + D I + V L + +SG++ Y +V Sbjct: 25 EGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVYTLVF 84 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +A+++SG +S+ +P+ A+IG GD IS PGG Sbjct: 85 PGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGT 122 >gi|162450982|ref|YP_001613349.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum 'So ce 56'] gi|161161564|emb|CAN92869.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum 'So ce 56'] Length = 140 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE I RA+V+ + + + + + V LV+ ++ ++ +V ADV+SG +S+ +P Sbjct: 39 LEIEIERADVVKPADIPPNVVTMNSRVELVDLDTEERLCVTVVFPGNADVKSGRISVLAP 98 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G D + P + I ++ + Sbjct: 99 MGLALLGCREADEVEWPTPSRTRRLRIERIAY 130 >gi|254785677|ref|YP_003073106.1| transcription elongation factor GreA [Teredinibacter turnerae T7901] gi|237684826|gb|ACR12090.1| transcription elongation factor GreA [Teredinibacter turnerae T7901] Length = 126 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL + A V+D + G R+ FG+ V++ + +++++QIV E+ GL+ Sbjct: 30 AELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIVSSDESLSGRGLLDQR 89 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155 SP+A+AL G G+++ V G YE+ + Sbjct: 90 SPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122 >gi|302389044|ref|YP_003824865.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] gi|302199672|gb|ADL07242.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM 16646] Length = 150 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M ++ F+ + + L ++R + N+ + A+EL++L + Sbjct: 1 MQRTYTLSKTAFEALIKHLADL----------EAGKSRLIDEHFSNSP-REARELEHLLD 49 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV---GDQEADVQS 117 + ++ I+ + D + S + + V + + + + N+++V G+ +D + Sbjct: 50 NYIKFMDEFISSVQQEDTADESFPYVVINSRVQVQDIENDETYNFRVVLPSGNIASDPEI 109 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 VS+ SP+ ++L+ K+ G+ + VNAPGG YEI + + Sbjct: 110 YSVSVLSPVGKSLLLKKPGEKVQVNAPGGMFLYEIKAIYF 149 >gi|170695928|ref|ZP_02887067.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M] gi|170139112|gb|EDT07301.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M] Length = 139 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 N L++++ RA ++D + + + + +LV+++SG++ + +V +AD Sbjct: 28 GANARFQEMLDDVLERAVIVDSREIPANVVTMNSQATLVDESSGEQMTWTVVYPPDADFA 87 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G+ I P G EK ++ ++L+ Sbjct: 88 HGRLNVFSPVGLALLGAKRGEHIHFMPPSGAEKVLKLEKILY 129 >gi|297617314|ref|YP_003702473.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] gi|297145151|gb|ADI01908.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus DSM 12680] Length = 150 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 52/103 (50%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E + L E + +++ +I + + + + G+ V + + + Y+I+ Sbjct: 42 EFEILLENYIKQVDELIRKVKKSSKAGNKLPFVTIGSEVEIQNLSDKETHKYRIITPFRG 101 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 V+ G +S SP+ ++L+ +++GD+I V APGG Y+I + Sbjct: 102 SVKDGDISYLSPVGKSLLLRKVGDVIEVKAPGGIFHYKIKSIR 144 >gi|316932887|ref|YP_004107869.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gi|315600601|gb|ADU43136.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 174 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 24/151 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPR-IIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT+ G ++++L + +I+ ++E R A +A Y AA+ Sbjct: 45 VTAAGLAALEEQLAEAKAALEAAGLIEDVNERRRAEAIPLRDARYYAARVRTAQVM---- 100 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 S D IAFG+TV+ + G + Y+IVG+ EAD + G +S S Sbjct: 101 -------------PDPASTDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPKQGTISFVS 146 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+AR+L+GK +GD++ G + E++ + Sbjct: 147 PVARSLMGKSVGDVV----GKGAQELEVVGI 173 >gi|167839479|ref|ZP_02466163.1| nucleoside diphosphate kinase regulator, putative [Burkholderia thailandensis MSMB43] Length = 132 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA++++ + + + + + L+++++G + IV A+ + Sbjct: 22 RNPRYQEMLDTLLERADIVEPDKIQANVVTMNSQIKLLDESAGQDMIWTIVYPDAANFEQ 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPG-GEKTYEILQVLW 157 G +++ SP+ AL+G G+ + V PG + T +I+++++ Sbjct: 82 GRLNVFSPVGMALLGARRGERVKVTLPGAADATLKIVEIVY 122 >gi|146343253|ref|YP_001208301.1| transcription elongation factor regulatory protein [Bradyrhizobium sp. ORS278] gi|146196059|emb|CAL80086.1| putative transcription elongation factor (greB) (Transcript cleavage factor greB) [Bradyrhizobium sp. ORS278] Length = 174 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIK-AISEARAYGDLS-ENAEYQAAKELQNLNEGRMA 64 VT G ++ +L Q ++E R L +A Y AA+ Sbjct: 45 VTETGLKALEDQLHQAQAAYEAAQAIADVNERRRESALPLRDARYFAARLRTAQLM---- 100 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 S IAFG+TV+ + G + Y+IVG+ EAD + G +S S Sbjct: 101 -------------PPPSSTAAIAFGSTVTFR-RGDGRTQTYRIVGEDEADPKHGTISHVS 146 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+AR L+GK GD++ V + EIL++ Sbjct: 147 PVARRLMGKTAGDVVEVTG----QELEILRI 173 >gi|254718708|ref|ZP_05180519.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. 83/13] gi|265983683|ref|ZP_06096418.1| GreA/GreB family elongation factor [Brucella sp. 83/13] gi|306837756|ref|ZP_07470623.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. NF 2653] gi|264662275|gb|EEZ32536.1| GreA/GreB family elongation factor [Brucella sp. 83/13] gi|306407165|gb|EFM63377.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp. NF 2653] Length = 156 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VTS G +I EL Q + I E A +S + Y A+ Sbjct: 28 VTSAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWTARRETAEL------- 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + D + FG TV L + G + + IVG+ EAD G +S +P+ Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSIRRWTIVGEDEADPSRGKISHVAPV 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 + L GK +GD++ + G +EI+ Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152 >gi|197104061|ref|YP_002129438.1| transcription elongation factor [Phenylobacterium zucineum HLK1] gi|196477481|gb|ACG77009.1| transcription elongation factor [Phenylobacterium zucineum HLK1] Length = 214 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGA 90 K AR A+Y L + + L + RA V+ S + G+ Sbjct: 86 TKTRERARTPTVRVAEADYDRLLNLADHDGPGAELLARELDRAIVVREGEKSRPFVRLGS 145 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKT 149 TV ++ + + ++V AD+ + +S+ SP+ AL+G +GD S AP G + Sbjct: 146 TVEYRDRLTEKVRTVELVPPDAADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDGRPRV 205 Query: 150 YEILQVL 156 + V Sbjct: 206 VTVEAVR 212 >gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis C] gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor greA ) [Mycobacterium tuberculosis C] Length = 110 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ + Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV 95 L+++++ A+V + SG + Sbjct: 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYY 96 >gi|94312386|ref|YP_585596.1| GreA/GreB family elongation factor [Cupriavidus metallidurans CH34] gi|93356238|gb|ABF10327.1| regulator of nucleoside diphosphate kinase [Cupriavidus metallidurans CH34] gi|222871747|gb|EEF08878.1| predicted protein [Populus trichocarpa] Length = 145 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ RA ++ + D + + V + +++ +V +AD+ +G +S+ SPI + Sbjct: 46 LLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQ 105 Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G GD + P G + I+++ + Sbjct: 106 ALLGARSGDTVDYRLPDGRAQRVTIVEIAF 135 >gi|145641638|ref|ZP_01797215.1| transcription elongation factor GreA [Haemophilus influenzae R3021] gi|145273685|gb|EDK13554.1| transcription elongation factor GreA [Haemophilus influenzae 22.4-21] Length = 58 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 + +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFL 58 >gi|296103416|ref|YP_003613562.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057875|gb|ADF62613.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 136 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ + LNE + RA++ +M D + Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVADALNE--------ELDRAQMCTPESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V +G++ +V + S +S+ +P+ AL+G GD I PGG Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSAQLSVLAPVGAALLGLRTGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L +L+ Sbjct: 115 ASTHLEVLALLY 126 >gi|323135884|ref|ZP_08070967.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242] gi|322398975|gb|EFY01494.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242] Length = 155 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G ++I++EL E I +A A D +A A ++L+ R + Sbjct: 30 VTPEGLEQIERELHRLHGE--------IEKATANDDN--HALALAQRDLRYWTARRAS-- 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 AEVI + FG +VE G+++ +++VG+ EAD GL+ +P+ Sbjct: 78 ------AEVIRP-IADHSHVRFGHR-VVVELEGGERRAFRLVGEDEADPAKGLIPYVAPL 129 Query: 127 ARALIGKELGDIISV 141 A AL+GK +GD V Sbjct: 130 ATALMGKTVGDKAEV 144 >gi|114706677|ref|ZP_01439578.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi HTCC2506] gi|114538069|gb|EAU41192.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi HTCC2506] Length = 156 Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 24/154 (15%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D VT +G I EL + AR D A +++ N Sbjct: 24 SDPNIVTPRGLKMIDDELEALNAQRAT--------AREAKDKVALATIHR--DMRYWNAR 73 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R A+++ + + FG V++ E++ G K+++ IVG EAD + G +S Sbjct: 74 R--------ATAKLVKPD-QNPQTVQFGTRVTI-ERDDGQKQSFTIVGIDEADPRDGYLS 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+AR L+GK +G+ + V G EI+ + Sbjct: 124 YLSPLARNLVGKNVGEEVKV----GASNAEIVSI 153 >gi|295096632|emb|CBK85722.1| Transcription elongation factor [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 136 Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ + LNE + RA++ TM D + Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVSDALNE--------ELDRAQMCTPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V +G++ +V + S +S+ +P+ AL+G GD I PGG Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114 Query: 147 -EKTYEILQVLW 157 E+L++L+ Sbjct: 115 ASAHLEVLELLY 126 >gi|91784350|ref|YP_559556.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] gi|91688304|gb|ABE31504.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400] Length = 136 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Query: 60 EGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ ++ ++++ RA ++D + + + + +LV++ SG+ + +V AD G Sbjct: 27 DARLQDMLDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHG 86 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 +++ SP AL+G + G+ I P G EK ++ ++L+ Sbjct: 87 RLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126 >gi|296158435|ref|ZP_06841266.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] gi|295891379|gb|EFG71166.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1] Length = 136 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Query: 60 EGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R+ ++ ++++ RA ++D + + + + +LV++ SG+ + +V AD G Sbjct: 27 DARLQDMLDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHG 86 Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 +++ SP AL+G + G+ I P G EK ++ ++L+ Sbjct: 87 RLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126 >gi|75675115|ref|YP_317536.1| transcription elongation factor GreA/GreB region [Nitrobacter winogradskyi Nb-255] gi|74419985|gb|ABA04184.1| GreA/GreB family elongation factor [Nitrobacter winogradskyi Nb-255] Length = 151 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVI 76 L ++ P I + + L+E A +Y A E + E I ++ Sbjct: 2 LDNLKKTHLPAIAISAHDIDRLRHLAEAAIEKYPATAE---FLAREIDRAEIIPADGSLL 58 Query: 77 DISTMSG---DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 D + + + + V+ ++ SG K+ +V ++ADV +G +SI SPI ALIG Sbjct: 59 DDTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGL 118 Query: 134 ELGDIISVNAP-GGEKTYEILQV 155 G I P GG ++ ++ V Sbjct: 119 SAGQSIEFQTPSGGWRSLTVIAV 141 >gi|325105687|ref|YP_004275341.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] gi|324974535|gb|ADY53519.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] Length = 126 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + A+V+ + + GD + + V + ++ +Q+V QEA+++ +S+ Sbjct: 32 QKLEKELNEAKVLADAELPGDVVRLESVVKIESVDNNKTFTFQLVMPQEANMKKQKLSVF 91 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +PI AL+G + G I+ P G K ++I+ V Sbjct: 92 APIGIALLGYQTGTIVEWEMPDGVKKFKIIDVK 124 >gi|299140453|ref|ZP_07033593.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597567|gb|EFI53765.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 125 Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63 K +T G +++++E ++ ++RP + ++ A + GD SENA+YQ AK +GR+ Sbjct: 19 KNYITPGGLERLKEEHQFLLNKDRPAVAVVVAWAASNGDRSENADYQYAKRRLRQIDGRI 78 Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQI 107 L + AEV+D S + ++ FGAT L +G ++ I Sbjct: 79 RHLSKRMEAAEVVDPEAPRSGLRATKVYFGAT-VLYANAAGVEREVSI 125 >gi|309781359|ref|ZP_07676095.1| regulator of nucleoside diphosphate kinase [Ralstonia sp. 5_7_47FAA] gi|308919772|gb|EFP65433.1| regulator of nucleoside diphosphate kinase [Ralstonia sp. 5_7_47FAA] Length = 135 Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 A Y + + A N ++++I RA V+ + + D + + V + Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLAGLVDDLIARANVVPGNKIPADVVTMNSVVCV 62 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153 V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G + +AP G +++ I Sbjct: 63 VD-DTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRID 121 Query: 154 QVLW 157 +V + Sbjct: 122 RVAF 125 >gi|331696133|ref|YP_004332372.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans CB1190] gi|326950822|gb|AEA24519.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans CB1190] Length = 169 Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 64/151 (42%), Gaps = 5/151 (3%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M ++ + + + +++ EL + +R + + GD +++ + Sbjct: 1 MTEEAVWLAEIAYQRLRNELAELLR-QRAEGAEGGAGDHLVGDSADSTGDHQRLTDRRER 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQS- 117 + R+ +L+ ++ +A ++ G +++ + + + + + ++ A Sbjct: 60 DNRIRKLQELLQKA-IVSHDPPDDGVAEPGMLLTVRYEEDQESETFLLSHYEEGAYPDDF 118 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK 148 S SP+ A++GK+ GD I + P GE+ Sbjct: 119 MTCSPDSPLGSAVLGKKEGDRIEYSLPNGER 149 >gi|326802507|ref|YP_004320326.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21] gi|326553271|gb|ADZ81656.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21] Length = 124 Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA+V+ + +R+ + V + + +S + ++IV AD++ +S+ +P+ Sbjct: 36 YELGRAKVLAKDAIEKERVKLNSQVMVKDLDSQNTMVFRIVTPDLADMKQQKISVLTPMG 95 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 ALIG + GD + P G K Y IL+V Sbjct: 96 SALIGFKEGDQVEWKMPIGIKRYVILKVE 124 >gi|182412842|ref|YP_001817908.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] gi|177840056|gb|ACB74308.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1] Length = 204 Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 15/160 (9%) Query: 11 GFDK-IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 G+++ + +E + +R ++ EA + GDL EN ++AAKE + +M L+ Sbjct: 24 GYNRVLAEEFEALK-VKRAALVLDKIEAHSQGDLRENFGFKAAKEAIRAVDRKMMALDRF 82 Query: 70 ITR--AEVIDIS---TMSGDRIAFGATVSLV--EKNSGDKKNYQIV----GDQEADVQSG 118 + R + +D + T S D + G ++ + + ++ + G+ +D SG Sbjct: 83 VARNTFKEVDPAAWLTKSTDTLQLGHVTTIEKQDVTTKRTHSFTFLVTTYGETASDPDSG 142 Query: 119 LVS--ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 L +SP+A A++G G V P GE ++ + Sbjct: 143 LECLPHTSPLATAVLGLAAGAQTKVMLPAGESLLTLISIR 182 >gi|254467874|ref|ZP_05081280.1| GreA/GreB family elongation factor [beta proteobacterium KB13] gi|207086684|gb|EDZ63967.1| GreA/GreB family elongation factor [beta proteobacterium KB13] Length = 164 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT G ++++ + + E I + D EN + + E + Sbjct: 29 YVTPNGHKQLKETIHLIETE--------IKSIKELEDSPENKQ------NKMKLERDLRY 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 A +ID +++ FGA V L++ + + +QIVG+ EAD++ +S SP Sbjct: 75 YLKRFETAILIDKHE-ENNKVLFGAHVILID-ENDEAYKFQIVGEDEADIKQNKLSYVSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A+ LIG +GD + G + I + + Sbjct: 133 LAKELIGSLIGDEVVWKRADGNRVVFIDSINY 164 >gi|239820663|ref|YP_002947848.1| GreA/GreB family elongation factor [Variovorax paradoxus S110] gi|239805516|gb|ACS22582.1| GreA/GreB family elongation factor [Variovorax paradoxus S110] Length = 133 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ AEV + G+ + + V +V+ ++ ++ I +EA +GL+S+ SP+ Sbjct: 33 DLLDCAEVTSSRAVPGNIVTMCSRVEIVDAHTRRRQTLTICYPEEAKPAAGLISVLSPVG 92 Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157 L+G ++GD AP GE E+ +L+ Sbjct: 93 TGLLGLKVGDTARWQAPNGEACAAEVAAILF 123 >gi|187924646|ref|YP_001896288.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN] gi|187715840|gb|ACD17064.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN] Length = 136 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++++ RA ++D + + + + +LV++ SG++ + +V AD G +++ S Sbjct: 33 MLDDVLERAVIVDSREIPANVVTMNSQATLVDETSGEQMTWTVVYPPNADFAHGRLNVFS 92 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 P AL+G + G+ I P G EK ++ ++L+ Sbjct: 93 PAGIALLGAKRGERIRFTPPSGTEKVLKLEKILY 126 >gi|77747771|ref|NP_636222.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992915|ref|YP_001904925.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. B100] gi|167734675|emb|CAP52885.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris] Length = 143 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P+ Sbjct: 43 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G +G I APGG Sbjct: 103 TALLGLSVGQSIDWRAPGG 121 >gi|13476329|ref|NP_107899.1| transcription elongation factor greA [Mesorhizobium loti MAFF303099] gi|14027090|dbj|BAB54044.1| transcription elongation factor; GreA [Mesorhizobium loti MAFF303099] Length = 157 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 24/148 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ L + D+ AE +A +E + + Sbjct: 30 VTERGLAQIEDNLAELR------------------DILAKAERKADRERIAVVSRDLRYW 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 AE+ S D + FG V+L E + G K +++IVG+ EAD G +S SP+ Sbjct: 72 TARRENAELSVPEPGS-DVVRFGMGVTL-EADDGKKVHWKIVGEDEADPTKGSISHVSPM 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 A AL GK++GD+ +VN K +EI++ Sbjct: 130 AVALFGKKVGDVAAVNG----KEWEIVK 153 >gi|145222535|ref|YP_001133213.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK] gi|315442983|ref|YP_004075862.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1] gi|145215021|gb|ABP44425.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK] gi|315261286|gb|ADT98027.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1] Length = 157 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 21/146 (14%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D I ++ + + ++QEL A+ A E + A++ Sbjct: 4 ADTIWMSPQTRESLEQEL------------AALMAAPGPAGSDEVVDAWLARKE------ 45 Query: 62 RMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 R+ ++ ++T+AE +D + G +++ ++GD + + + D + + Sbjct: 46 RIRQIHELLTKAEHAVDPA--DDGVAEPGMVLTVRFDDAGDTETFLLGTRATVDSELDVY 103 Query: 121 SISSPIARALIGKELGDIISVNAPGG 146 S++SP+ AL+G G S P G Sbjct: 104 SVNSPMGSALLGATPGQQRSYQLPNG 129 >gi|148252734|ref|YP_001237319.1| transcription elongation factor regulatory protein [Bradyrhizobium sp. BTAi1] gi|146404907|gb|ABQ33413.1| GreA/GreB family elongation factor [Bradyrhizobium sp. BTAi1] Length = 160 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRI-IKAISEARAYGDLS-ENAEYQAAKELQNLNEGRMA 64 VT G ++ +L Q I+ ++E R L +A Y A Sbjct: 31 VTEAGLKALEDQLHQAQAAHEAAQAIEDVNERRRESALPLRDARYFAT------------ 78 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + A+V+ S + IAFG+TV+ E+ G + Y+IVG+ EAD + G++S S Sbjct: 79 ----RLRTAQVM-PQPSSTETIAFGSTVTF-ERGDGRVQTYRIVGEDEADPKRGMISYVS 132 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+AR L+GK +GD++ ++ +T EI + Sbjct: 133 PVARLLMGKSVGDVVEMSG----QTIEITAI 159 >gi|77359225|ref|YP_338800.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas haloplanktis TAC125] gi|76874136|emb|CAI85357.1| putative regulator of nucleoside diphosphate kinase [Pseudoalteromonas haloplanktis TAC125] Length = 161 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSEN-AEYQAAKELQNLNEGRMAELENIITRAEVID 77 ++ + +RP II + +A DL E+ A E ELE + RA ++D Sbjct: 20 IKDIELNKRPEIIISSLDADRLYDLIESLPANSFAGEK---------ELEAELGRATIVD 70 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + + +TV+ V ++S ++ N +V ++ D +SI +PI AL+G GD Sbjct: 71 PKDVPATIVTMNSTVNFVVESSKEEFNLTLVYPKDLDASGQKISILAPIGGALLGLSQGD 130 Query: 138 IISVNAP-GGEKTYEILQVLW 157 I P GG +I +V + Sbjct: 131 EIEWPKPGGGLIKVKIKEVTY 151 >gi|62179216|ref|YP_215633.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582450|ref|YP_002636248.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126849|gb|AAX64552.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466977|gb|ACN44807.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713681|gb|EFZ05252.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 136 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 TSTHLEVLELEY 126 >gi|288940256|ref|YP_003442496.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180] gi|288895628|gb|ADC61464.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180] Length = 137 Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 M ELE + RAEV+D M + ++ +TV ++ + +V ++ D G +SI Sbjct: 32 MDELEAELARAEVVDPREMPPNVVSMNSTVRFRVMSTNEAFTLTLVYPKDMDASGGKISI 91 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G GD I P GG I +V + Sbjct: 92 LAPVGSALLGLSSGDEIEWPKPGGGVLRVRIEEVTY 127 >gi|325928206|ref|ZP_08189414.1| transcription elongation factor [Xanthomonas perforans 91-118] gi|325541422|gb|EGD12956.1| transcription elongation factor [Xanthomonas perforans 91-118] Length = 157 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 54 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 113 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 114 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 142 >gi|294626142|ref|ZP_06704749.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599591|gb|EFF43721.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 146 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131 >gi|289670900|ref|ZP_06491975.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 143 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131 >gi|289663515|ref|ZP_06485096.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 143 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131 >gi|78046496|ref|YP_362671.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034926|emb|CAJ22571.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 146 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131 >gi|73542981|ref|YP_297501.1| transcription elongation factor GreA/GreB region [Ralstonia eutropha JMP134] gi|72120394|gb|AAZ62657.1| Prokaryotic transcription elongation factor GreA/GreB region [Ralstonia eutropha JMP134] Length = 139 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 ++ RA ++ + D + + + + + + +V EAD +G +S+ SP+ + Sbjct: 40 LLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYPDEADFDAGRLSVLSPVGQ 99 Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G G+ +S P G E+ + ++ + Sbjct: 100 ALLGARAGETVSYRLPDGREQHVSVTEITF 129 >gi|168818764|ref|ZP_02830764.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344225|gb|EDZ30989.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 136 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIAYALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|108762200|ref|YP_632099.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK 1622] gi|108466080|gb|ABF91265.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK 1622] Length = 138 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 61 GRMAELENIIT----RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 GR AE ++ RA V+ + D + + V ++ SG+++ +V ++A Sbjct: 27 GRTAEFAEMLDAELTRARVVASEEVPPDVVTMNSKVVFEDEQSGERREVTLVYPRDASSD 86 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 G +S+ +PI ALIG +G I+ PGG K I+ V + Sbjct: 87 DGRISVLAPIGSALIGLTVGQTITWPLPGGRSKRLRIVAVPY 128 >gi|325290512|ref|YP_004266693.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM 8271] gi|324965913|gb|ADY56692.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM 8271] Length = 138 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 14/133 (10%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 ++R RI+K I + +G N+ + +LE + RA ++ + + Sbjct: 10 KDRERILKLIEREKEFGT--------------GRNKEPLRDLEQELNRANIVSSEEIPHE 55 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 I + V L + G++ Y +V ++A + +S+ +PI A++G GD+I P Sbjct: 56 SITMNSKVLLKDLALGEETIYTLVYPEDAKLSENKISVLAPIGTAILGFREGDVIDWKVP 115 Query: 145 GGEKTYEILQVLW 157 G + ++L+ Sbjct: 116 AGTVQLRVEKILY 128 >gi|307140092|ref|ZP_07499448.1| transcription elongation factor GreB [Escherichia coli H736] Length = 68 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE ++ + Sbjct: 3 IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNA 62 Query: 155 VLWI 158 + ++ Sbjct: 63 IEYV 66 >gi|187929940|ref|YP_001900427.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J] gi|187726830|gb|ACD27995.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J] Length = 135 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 A Y + + A N ++++I RA V+ + + D + + V + Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVVCV 62 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153 V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G + +AP G +++ I Sbjct: 63 VD-DAGAEQKWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRID 121 Query: 154 QVLW 157 +V + Sbjct: 122 RVAF 125 >gi|319787977|ref|YP_004147452.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis 11-1] gi|317466489|gb|ADV28221.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis 11-1] Length = 143 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RAEV+ + D + + V + SG+K +V EADV+ G VS+ +P+ Sbjct: 43 DELNRAEVLPPEQVPADVVTMHSQVECEDIASGEKHVLTLVYPNEADVEKGRVSVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G +G I APGG + V + Sbjct: 103 SALLGLSVGQSIDWQAPGGRPLKLRVTGVRY 133 >gi|77748553|ref|NP_641255.2| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 146 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSVGQRIDWRTPDGRDLRLRVTAV 131 >gi|85859428|ref|YP_461630.1| transcription elongation factor [Syntrophus aciditrophicus SB] gi|85722519|gb|ABC77462.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 134 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 LE + A V+ M D + + V + +G+++ +V +A++ SG VS+ Sbjct: 30 RSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQANMASGRVSVL 89 Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 +P+ ALIG +G I P G ++ I++VL+ Sbjct: 90 APVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLY 124 >gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis DSM 43017] gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM 43017] Length = 154 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ ++++EL ++ +R ++ + E GD ++ A+ E+ + + R+ E+ Sbjct: 7 LSPATRSRLERELEQLRK-QRAELLPRLGE-DPLGDSADQADLVERSEVVSRLDRRINEV 64 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI---S 123 +++ ++ ST S + G V+L + G ++ +VG A+ S Sbjct: 65 VDLL-HGQI---STESEGGLPSGTKVTLRF-DDGSVEDMVVVG-VAAEADEDDTSTLTAD 118 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154 SP+ +AL G + GD ++ P GE T EI++ Sbjct: 119 SPLGQALAGHQEGDTVTYRTPKGEVTAEIVK 149 >gi|149279968|ref|ZP_01886094.1| nucleoside diphosphate kinase regulator protein, putative [Pedobacter sp. BAL39] gi|149229348|gb|EDM34741.1| nucleoside diphosphate kinase regulator protein, putative [Pedobacter sp. BAL39] Length = 129 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 ++RA ++ D I +TV + ++++G+ IV Q A+++ +S+ +PIA A Sbjct: 39 LSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIMELIIVLPQHANIKEKKISVLTPIAAA 98 Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155 LIG GD + P G K + I +V Sbjct: 99 LIGFRQGDAVQWKVPAGLKNFRITEV 124 >gi|294634651|ref|ZP_06713184.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC 23685] gi|291091897|gb|EFE24458.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC 23685] Length = 140 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E E+ Q LNE + RA+++ M D + Sbjct: 7 RPAIIINELDAERLDRLLERPEFANQPIAQALNE--------ELDRAQLLAPEAMPTDVV 58 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + +S ++ ++ + +S+ +PI AL+G +GD I + P G Sbjct: 59 TMNSRVRFRDLSSNEEHVRTLIYPHLPNDAEDGLSVMAPIGAALLGLHVGDAIRWHLPNG 118 Query: 147 EKT-YEILQVLW 157 +T E+L +L+ Sbjct: 119 SQTHIEVLALLY 130 >gi|283784385|ref|YP_003364250.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium ICC168] gi|282947839|emb|CBG87399.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium ICC168] Length = 136 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA + TM D + Sbjct: 3 RPPIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRARMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAPVGAALLGLRVGDTIHWQLPGG 114 Query: 147 EK-TYEILQVLW 157 E+L++ + Sbjct: 115 VSAHLEVLELEY 126 >gi|227877960|ref|ZP_03995964.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] gi|227862430|gb|EEJ69945.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] Length = 85 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ +A Sbjct: 1 LKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQA 58 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 ++ KE G +V AP GE I++V Sbjct: 59 IMKKEAGTTATVAAPVGEYQVTIVEVK 85 >gi|320177450|gb|EFW52449.1| Regulator of nucleoside diphosphate kinase [Shigella dysenteriae CDC 74-1112] Length = 136 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E+ Y +LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEHPAYAGLPIADSLNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|21111854|gb|AAM40146.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 135 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P+ Sbjct: 35 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPVG 94 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G +G I APGG Sbjct: 95 TALLGLSVGQSIDWRAPGG 113 >gi|16759576|ref|NP_455193.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763993|ref|NP_459608.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142651|ref|NP_805993.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414248|ref|YP_151323.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161615176|ref|YP_001589141.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550854|ref|ZP_02344610.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990616|ref|ZP_02571716.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231621|ref|ZP_02656679.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236603|ref|ZP_02661661.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240457|ref|ZP_02665389.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260874|ref|ZP_02682847.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465785|ref|ZP_02699667.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450939|ref|YP_002044647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471151|ref|ZP_03077135.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735601|ref|YP_002113733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250140|ref|YP_002145589.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263195|ref|ZP_03163269.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363171|ref|YP_002142808.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245388|ref|YP_002214607.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390133|ref|ZP_03216744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930449|ref|ZP_03221379.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351905|ref|YP_002225706.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856082|ref|YP_002242733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023434|ref|ZP_03337881.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051866|ref|ZP_03344744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417566|ref|ZP_03350708.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425121|ref|ZP_03357871.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613069|ref|ZP_03370895.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647691|ref|ZP_03377744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850322|ref|ZP_03381220.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911567|ref|ZP_04655404.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829888|ref|ZP_06547376.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511993|pir||AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419127|gb|AAL19567.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501868|emb|CAD05093.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138282|gb|AAO69853.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128505|gb|AAV78011.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364540|gb|ABX68308.1| hypothetical protein SPAB_02944 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409243|gb|ACF69462.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457515|gb|EDX46354.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711103|gb|ACF90324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631988|gb|EDX50508.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094648|emb|CAR60171.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213843|gb|ACH51240.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241450|gb|EDY24070.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290337|gb|EDY29693.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939904|gb|ACH77237.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602578|gb|EDZ01124.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320383|gb|EDZ05586.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271686|emb|CAR36516.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324214|gb|EDZ12053.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330837|gb|EDZ17601.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334065|gb|EDZ20829.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339721|gb|EDZ26485.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349901|gb|EDZ36532.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707885|emb|CAR32173.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245889|emb|CBG23690.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992344|gb|ACY87229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157217|emb|CBW16704.1| regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911647|dbj|BAJ35621.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084884|emb|CBY94674.1| Transcription elongation factor greA Transcript cleavage factor greA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226194|gb|EFX51245.1| Regulator of nucleoside diphosphate kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613251|gb|EFY10194.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621321|gb|EFY18178.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623740|gb|EFY20578.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629012|gb|EFY25791.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631734|gb|EFY28488.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637530|gb|EFY34232.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641870|gb|EFY38500.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646715|gb|EFY43221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651415|gb|EFY47795.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653134|gb|EFY49468.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658854|gb|EFY55109.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664876|gb|EFY61069.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668878|gb|EFY65030.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670616|gb|EFY66749.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675357|gb|EFY71433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682172|gb|EFY78197.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684997|gb|EFY80994.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128933|gb|ADX16363.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193943|gb|EFZ79145.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197965|gb|EFZ83087.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201988|gb|EFZ87048.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207121|gb|EFZ92074.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211668|gb|EFZ96502.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214352|gb|EFZ99103.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221503|gb|EGA05917.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225547|gb|EGA09777.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231105|gb|EGA15221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234063|gb|EGA18152.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238242|gb|EGA22300.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242524|gb|EGA26548.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248499|gb|EGA32433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251285|gb|EGA35157.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259213|gb|EGA42856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261516|gb|EGA45095.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264803|gb|EGA48304.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272360|gb|EGA55767.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622360|gb|EGE28705.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626944|gb|EGE33287.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987561|gb|AEF06544.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 136 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|256821334|ref|YP_003145297.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069] gi|256794873|gb|ACV25529.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069] Length = 136 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE + RAE+++ + + + +TV +S ++ Y +V ++AD + +SI + Sbjct: 33 ELEIELERAEIVEPKEVPANVVTMNSTVRFKVASSKEEFEYTLVYPKDADGSNNKISILA 92 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ A++G + GD I P GG I +V++ Sbjct: 93 PVGSAMLGLKEGDEIEWPKPGGGVLKVHIDKVVY 126 >gi|154246865|ref|YP_001417823.1| transcription elongation factor regulatory protein [Xanthobacter autotrophicus Py2] gi|154160950|gb|ABS68166.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2] Length = 158 Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 6/129 (4%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 + A+ EARA L++ + QA + + A++I+ + Sbjct: 35 MAALDAALGEARAAYALAQMGDVQADRMAMARATRDLRYYSARRASAQLIEAVAHP-QSV 93 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 FGATV++ + G ++ ++IVG+ EAD G VS SP+A+AL+ K +GD+ V G Sbjct: 94 QFGATVTIS-REDGRRQVFRIVGEDEADPAKGSVSYVSPLAKALMSKVVGDVALV---AG 149 Query: 147 EKTYEILQV 155 + E+L++ Sbjct: 150 -REVEVLEI 157 >gi|330830261|ref|YP_004393213.1| transcription elongation factor GreA/GreB [Aeromonas veronii B565] gi|328805397|gb|AEB50596.1| Transcription elongation factor GreA/GreB [Aeromonas veronii B565] Length = 131 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAE+ + + M D + + V ++SG++ +V ++A +S+ +P Sbjct: 29 LQEELDRAEIREPADMPPDVVTMNSKVRFKMQSSGNEFCLTLVYPRDAKGDESNISVLAP 88 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G ++GD I+ P G EIL+V++ Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121 >gi|21107037|gb|AAM35791.1| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 138 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 35 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 94 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G +G I P G Sbjct: 95 SALLGLSVGQRIDWRTPDG 113 >gi|37527898|ref|NP_931243.1| nucleoside diphosphate kinase regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787334|emb|CAE16418.1| Regulator of nucleoside diphosphate kinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 136 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E + LNE + RAE++ + + D + Sbjct: 4 PAIIINELDAERLDSLLEQPAFADTSIADALNE--------ELDRAEIVPPAEIPSDVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V ++ S +++ +V S +S+ +P+ AL+G +GD IS P GE Sbjct: 56 MNSRVRFIDLTSNEERVRTLVYPASLQDSSDQLSVMAPLGAALLGLRIGDEISWELPNGE 115 Query: 148 KT-YEILQVLW 157 +T ++L++L+ Sbjct: 116 ETRVKVLELLY 126 >gi|218549803|ref|YP_002383594.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii ATCC 35469] gi|218357344|emb|CAQ89981.1| regulator of nucleoside diphosphate kinase [Escherichia fergusonii ATCC 35469] gi|324114743|gb|EGC08711.1| hypothetical protein ERIG_00737 [Escherichia fergusonii B253] gi|325498198|gb|EGC96057.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii ECD227] Length = 136 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDMLLEQPAYAGLPIADALNA--------ELDRAQMCSPETMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 TSTHLEVLELEY 126 >gi|255535437|ref|YP_003095808.1| transcription elongation factor [Flavobacteriaceae bacterium 3519-10] gi|255341633|gb|ACU07746.1| transcription elongation factor [Flavobacteriaceae bacterium 3519-10] Length = 170 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + A++++ + + D + + V + +N+ ++IV ++A+++ +SI SP+A Sbjct: 71 RELHSAKIVESADIPADVVTMNSVVKIHFENNKTVTEFKIVYPEQANIKDRKISIFSPVA 130 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157 ALIG + D I P G I ++++ Sbjct: 131 AALIGYSVNDEIDWIVPSGMTKIIIDEIIY 160 >gi|92118882|ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] gi|91801776|gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 141 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L I RAE+I + + + + V+ ++ SG K+ +V ++ADV +G +SI + Sbjct: 39 FLAREIDRAEIIPADRSARNIVTMQSEVTFIDDISGQKRTVILVYPEDADVDAGKISILT 98 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQV 155 PI ALIG G I P GG ++ ++ V Sbjct: 99 PIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 130 >gi|331676268|ref|ZP_08376980.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591] gi|331076326|gb|EGI47608.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591] Length = 136 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|161504212|ref|YP_001571324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865559|gb|ABX22182.1| hypothetical protein SARI_02319 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 136 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPSDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|260462428|ref|ZP_05810636.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] gi|259031922|gb|EEW33190.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] Length = 157 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ L + D+ AE + +E + + Sbjct: 30 VTERGLAQIEDNLSDLR------------------DILAKAERKGDRERIAVVSRDLRYW 71 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 AE+ S D + FG V+L E + G K +++IVG+ EA+ G +S SP+ Sbjct: 72 NARRESAELSVPEPGS-DLVRFGMGVTL-EGDDGRKVHWKIVGEDEANPSKGSISHVSPM 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 A AL GK++G++++VN K +EI++ Sbjct: 130 AVALFGKKVGEVVTVNG----KEWEIVK 153 >gi|213584821|ref|ZP_03366647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 131 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|194444344|ref|YP_002039856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403007|gb|ACF63229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 136 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPVNMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|157157899|ref|YP_001461775.1| nucleoside diphosphate kinase regulator [Escherichia coli E24377A] gi|157079929|gb|ABV19637.1| regulator of nucleoside diphosphate kinase [Escherichia coli E24377A] Length = 136 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|225157643|ref|ZP_03725033.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] gi|224802710|gb|EEG20963.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2] Length = 148 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 42/80 (52%) Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 + D + M + V L + ++ + + Y + + AD ++ +SI +PI AL+G + Sbjct: 47 IEDDTAMPDGVVTLHCEVRLQDLDTNEIETYTLTLPEHADPEAHRISILAPIGTALLGYQ 106 Query: 135 LGDIISVNAPGGEKTYEILQ 154 + ++++ PGG + IL+ Sbjct: 107 VDNVVTWEMPGGARRLRILE 126 >gi|294665206|ref|ZP_06730505.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605029|gb|EFF48381.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 146 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 AL+G +G I P G + + V Sbjct: 103 SALLGLSIGQSIDWRTPDGRDLRLRVTAV 131 >gi|167647164|ref|YP_001684827.1| transcription elongation factor regulatory protein [Caulobacter sp. K31] gi|167349594|gb|ABZ72329.1| GreA/GreB family elongation factor [Caulobacter sp. K31] Length = 161 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 24/151 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL--SENAEYQAAKELQNLNEGRMA 64 VT G +I+ EL A S A+A GD+ A +A ++L+ + R + Sbjct: 30 VTPGGLVRIEDELA--------AARAAYSAAQAGGDVAQDRTAMARATRDLRYWSARRAS 81 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + +D + D + FG +V+ ++ G ++ ++IVG+ EAD G VS S Sbjct: 82 ------AQLRELDPA---LDVLQFGGSVTF-DREDGRRQTFRIVGEDEADPTQGSVSYVS 131 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+ARAL+GK +GD V GG EI+ + Sbjct: 132 PVARALLGKAVGDTAIVA--GG--EVEIIAI 158 >gi|315127894|ref|YP_004069897.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp. SM9913] gi|315016408|gb|ADT69746.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp. SM9913] Length = 137 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE + RA +++ + + +TV+ V +++G++ +V + D +SI Sbjct: 33 KELEAELGRANIVEPHEVPSTVVTMNSTVNFVVESTGEEFTLTLVYPKNIDSSGNKISIL 92 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G GD I P GG T I +V + Sbjct: 93 APVGSALLGLSQGDQIEWPKPGGGLITVAIKEVTY 127 >gi|115523623|ref|YP_780534.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisA53] gi|115517570|gb|ABJ05554.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisA53] Length = 160 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 24/152 (15%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRI-IKAISEARAY-GDLSENAEYQAAKELQNLNEGRM 63 VT+ G ++Q+L + I+ ++E R +A Y AA+ + Sbjct: 30 WVTAGGLQALEQQLAAARAAVEAAAVIEDVNERRRQEAGPLRDARYLAARVRTAQL---I 86 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AE S + +AFG TV+ + G + Y+IVG+ EAD ++G +S Sbjct: 87 AEPT--------------STEAVAFGHTVTFRRAD-GRVQTYRIVGEDEADPKAGSISFV 131 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+AR L+ K +GD++ G+ EI+ + Sbjct: 132 SPVARLLMRKAVGDVV----GAGDHELEIIAI 159 >gi|323967558|gb|EGB62974.1| hypothetical protein ERJG_01136 [Escherichia coli M863] gi|327254294|gb|EGE65916.1| regulator of nucleoside diphosphate kinase [Escherichia coli STEC_7v] Length = 136 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYSGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|256377672|ref|YP_003101332.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827] gi|255921975|gb|ACU37486.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827] Length = 155 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 17/145 (11%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++ +T ++++ EL +E A D E+A + + + + Sbjct: 4 ARRVWLTPHTHERLRAELAGL-----------FAENSAPTDDPESALLRRTEREERI--- 49 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 E+++++ VI G +++ + D + + + + S Sbjct: 50 --REVQDLL-NHAVIGEDPPDDGVAEPGMVLTVRYDDFDDTETFLLGMRAVEHGDLEVYS 106 Query: 122 ISSPIARALIGKELGDIISVNAPGG 146 SP+ AL G G+ AP G Sbjct: 107 PESPLGAALTGARPGEHRGYRAPNG 131 >gi|194291135|ref|YP_002007042.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis LMG 19424] gi|193224970|emb|CAQ70981.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis LMG 19424] Length = 139 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++++ RA ++ + D + V +N+ +V AD +G +S+ S Sbjct: 36 MLDSLLARATIVAPEEIPTDVVTMNTRVVCTLPGEQAPRNWTLVYPDAADFDAGRLSVLS 95 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 P+ +AL+G G+ +S P G E+ +I ++ + Sbjct: 96 PVGQALLGARAGETVSYRLPDGREQQVQIAEIAF 129 >gi|297563795|ref|YP_003682768.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848244|gb|ADH70262.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 162 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 7/142 (4%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 +T + ++++++ELR + P R GD+ Y + + R+ Sbjct: 8 WMTREAYERLREELRTLR--ALPDDDPGTGADRGAGDVLPAPRY---IHDPAVRQARVHT 62 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-VGDQEADVQSGLVSISS 124 +E +++ A V+D + A G +++ + + + + V D + + S S Sbjct: 63 IERLLSEA-VVDEAAPDDGIAAPGKVLTIRYDGEEEDEVFLLGVRDASVADRMTVYSPES 121 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ AL+G G+ + AP G Sbjct: 122 PLGAALVGARQGERRTFTAPRG 143 >gi|241664050|ref|YP_002982410.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D] gi|240866077|gb|ACS63738.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D] Length = 135 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 A Y + + A N ++++I RA V+ + + D + + V + Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLAGLVDDLIARANVVPGNKIPADVVTMNSVVCV 62 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153 V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G I AP G +++ I Sbjct: 63 VD-DTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSIKYAAPNGAQRSLRID 121 Query: 154 QVLW 157 +V + Sbjct: 122 RVAF 125 >gi|84387295|ref|ZP_00990316.1| transcription elongation factor GreA [Vibrio splendidus 12B01] gi|84377942|gb|EAP94804.1| transcription elongation factor GreA [Vibrio splendidus 12B01] Length = 64 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 46/63 (73%) Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + ++ ++ YQIV + EA++++G +S+ SPIAR LIGK GD + ++ PGG+K +EI +V Sbjct: 2 DVDTDEEFRYQIVSEDEAEIKTGRISVKSPIARGLIGKMEGDEVIISTPGGDKDFEIDKV 61 Query: 156 LWI 158 +I Sbjct: 62 EYI 64 >gi|319952551|ref|YP_004163818.1| grea/greb family elongation factor [Cellulophaga algicola DSM 14237] gi|319421211|gb|ADV48320.1| GreA/GreB family elongation factor [Cellulophaga algicola DSM 14237] Length = 139 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +L ++ A+V + + M D I F + V++ N+G K +Q+V +++D+++ VSI Sbjct: 35 IRKLSEELSFAKVCNNNEMPKDVIRFNSIVTIT-ANNGWTKEFQLVTPKDSDLKNNKVSI 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+ A+IG GD IS P GE+ + +V Sbjct: 94 LTPMGAAVIGYAEGDTISWEFPSGEQQLTVSKVE 127 >gi|253991158|ref|YP_003042514.1| nucleoside diphosphate kinase regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782608|emb|CAQ85772.1| regulator of nucleoside diphosphate kinase [Photorhabdus asymbiotica] Length = 136 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E + LNE + RAE++ + + D + Sbjct: 4 PAIIINELDAERLDSLLEQPAFADTSIADALNE--------ELDRAEIVPPAEIPSDVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V ++ S +++ +V S +S+ +P+ AL+G +GD IS P GE Sbjct: 56 MNSRVRFLDLTSSEERVRTLVYPASLQDSSNQLSVMAPLGAALLGLRIGDEISWKLPNGE 115 Query: 148 KT-YEILQVLW 157 +T ++L++L+ Sbjct: 116 ETRVKVLELLY 126 >gi|15800325|ref|NP_286337.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 EDL933] gi|15829903|ref|NP_308676.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. Sakai] gi|16128593|ref|NP_415143.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. MG1655] gi|24111957|ref|NP_706467.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str. 301] gi|26246590|ref|NP_752629.1| nucleoside diphosphate kinase regulator [Escherichia coli CFT073] gi|30062068|ref|NP_836239.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str. 2457T] gi|74311145|ref|YP_309564.1| nucleoside diphosphate kinase regulator [Shigella sonnei Ss046] gi|82543058|ref|YP_407005.1| nucleoside diphosphate kinase regulator [Shigella boydii Sb227] gi|89107477|ref|AP_001257.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. W3110] gi|91209657|ref|YP_539643.1| nucleoside diphosphate kinase regulator [Escherichia coli UTI89] gi|110640840|ref|YP_668568.1| nucleoside diphosphate kinase regulator [Escherichia coli 536] gi|110804605|ref|YP_688125.1| nucleoside diphosphate kinase regulator [Shigella flexneri 5 str. 8401] gi|117622830|ref|YP_851743.1| nucleoside diphosphate kinase regulator [Escherichia coli APEC O1] gi|157160106|ref|YP_001457424.1| nucleoside diphosphate kinase regulator [Escherichia coli HS] gi|168747719|ref|ZP_02772741.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4113] gi|168754712|ref|ZP_02779719.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4401] gi|168760240|ref|ZP_02785247.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4501] gi|168770214|ref|ZP_02795221.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4486] gi|168774674|ref|ZP_02799681.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4196] gi|168779101|ref|ZP_02804108.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4076] gi|168786458|ref|ZP_02811465.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC869] gi|168798171|ref|ZP_02823178.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC508] gi|170021031|ref|YP_001725985.1| nucleoside diphosphate kinase regulator [Escherichia coli ATCC 8739] gi|170080191|ref|YP_001729511.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170080292|ref|YP_001729612.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170681529|ref|YP_001742727.1| nucleoside diphosphate kinase regulator [Escherichia coli SMS-3-5] gi|187731796|ref|YP_001879282.1| nucleoside diphosphate kinase regulator [Shigella boydii CDC 3083-94] gi|188493179|ref|ZP_03000449.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638] gi|191167359|ref|ZP_03029175.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A] gi|191172347|ref|ZP_03033889.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11] gi|193069033|ref|ZP_03049991.1| regulator of nucleoside diphosphate kinase [Escherichia coli E110019] gi|194427996|ref|ZP_03060541.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171] gi|194437440|ref|ZP_03069537.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1] gi|195936160|ref|ZP_03081542.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. EC4024] gi|208809474|ref|ZP_03251811.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4206] gi|208816344|ref|ZP_03257523.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4045] gi|208822949|ref|ZP_03263267.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4042] gi|209397427|ref|YP_002269245.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4115] gi|209917869|ref|YP_002291953.1| nucleoside diphosphate kinase regulator [Escherichia coli SE11] gi|215485652|ref|YP_002328083.1| nucleoside diphosphate kinase regulator [Escherichia coli O127:H6 str. E2348/69] gi|217325093|ref|ZP_03441177.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14588] gi|218553153|ref|YP_002386066.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI1] gi|218557550|ref|YP_002390463.1| nucleoside diphosphate kinase regulator [Escherichia coli S88] gi|218688434|ref|YP_002396646.1| nucleoside diphosphate kinase regulator [Escherichia coli ED1a] gi|218694051|ref|YP_002401718.1| nucleoside diphosphate kinase regulator [Escherichia coli 55989] gi|218698983|ref|YP_002406612.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI39] gi|218703944|ref|YP_002411463.1| nucleoside diphosphate kinase regulator [Escherichia coli UMN026] gi|227884410|ref|ZP_04002215.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972] gi|237707417|ref|ZP_04537898.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA] gi|238899889|ref|YP_002925685.1| regulator of nucleoside diphosphate kinase [Escherichia coli BW2952] gi|253774405|ref|YP_003037236.1| nucleoside diphosphate kinase regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160691|ref|YP_003043799.1| nucleoside diphosphate kinase regulator [Escherichia coli B str. REL606] gi|254791777|ref|YP_003076614.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. TW14359] gi|256020563|ref|ZP_05434428.1| nucleoside diphosphate kinase regulator [Shigella sp. D9] gi|256023775|ref|ZP_05437640.1| nucleoside diphosphate kinase regulator [Escherichia sp. 4_1_40B] gi|260853863|ref|YP_003227754.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O26:H11 str. 11368] gi|260866759|ref|YP_003233161.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O111:H- str. 11128] gi|261224078|ref|ZP_05938359.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. FRIK2000] gi|261257772|ref|ZP_05950305.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O157:H7 str. FRIK966] gi|291281563|ref|YP_003498381.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7 str. CB9615] gi|293403873|ref|ZP_06647867.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412] gi|293408736|ref|ZP_06652575.1| kinase regulator [Escherichia coli B354] gi|293413907|ref|ZP_06656556.1| kinase regulator protein [Escherichia coli B185] gi|293418722|ref|ZP_06661157.1| hypothetical protein ECCG_03607 [Escherichia coli B088] gi|298379649|ref|ZP_06989254.1| nucleoside diphosphate kinase regulator protein [Escherichia coli FVEC1302] gi|300817873|ref|ZP_07098087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 107-1] gi|300823077|ref|ZP_07103211.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 119-7] gi|300901112|ref|ZP_07119222.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 198-1] gi|300907782|ref|ZP_07125400.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 84-1] gi|300920583|ref|ZP_07137004.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 115-1] gi|300927295|ref|ZP_07143022.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 182-1] gi|300931538|ref|ZP_07146854.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 187-1] gi|300939638|ref|ZP_07154290.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 21-1] gi|300951104|ref|ZP_07164971.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 116-1] gi|300959172|ref|ZP_07171254.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 175-1] gi|300990100|ref|ZP_07179112.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 45-1] gi|300996806|ref|ZP_07181547.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 200-1] gi|301025288|ref|ZP_07188852.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 69-1] gi|301028918|ref|ZP_07192087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 196-1] gi|301302086|ref|ZP_07208219.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 124-1] gi|301329123|ref|ZP_07222126.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 78-1] gi|301643983|ref|ZP_07244006.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 146-1] gi|306812957|ref|ZP_07447150.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101] gi|307137228|ref|ZP_07496584.1| nucleoside diphosphate kinase regulator [Escherichia coli H736] gi|307312673|ref|ZP_07592305.1| GreA/GreB family elongation factor [Escherichia coli W] gi|309795524|ref|ZP_07689941.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 145-7] gi|312965055|ref|ZP_07779292.1| regulator of nucleoside diphosphate kinase [Escherichia coli 2362-75] gi|312970688|ref|ZP_07784869.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1827-70] gi|331641111|ref|ZP_08342246.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736] gi|331645767|ref|ZP_08346870.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605] gi|331651619|ref|ZP_08352638.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718] gi|331656637|ref|ZP_08357599.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206] gi|331661974|ref|ZP_08362897.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143] gi|331666962|ref|ZP_08367836.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271] gi|331672151|ref|ZP_08372943.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280] gi|331682030|ref|ZP_08382654.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299] gi|332281747|ref|ZP_08394160.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9] gi|84028114|sp|P0AFW6|RNK_ECO57 RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028115|sp|P0AFW5|RNK_ECOL6 RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028116|sp|P0AFW4|RNK_ECOLI RecName: Full=Regulator of nucleoside diphosphate kinase gi|84028117|sp|P0AFW7|RNK_SHIFL RecName: Full=Regulator of nucleoside diphosphate kinase gi|210060903|pdb|3BMB|A Chain A, Crystal Structure Of A New Rna Polymerase Interacting Protein gi|210060904|pdb|3BMB|B Chain B, Crystal Structure Of A New Rna Polymerase Interacting Protein gi|12513506|gb|AAG54945.1|AE005240_11 regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EDL933] gi|26106989|gb|AAN79173.1|AE016757_77 Regulator of nucleoside diphosphate kinase [Escherichia coli CFT073] gi|598118|gb|AAC36933.1| rnk [Escherichia coli] gi|1651248|dbj|BAA35239.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K12 substr. W3110] gi|1778527|gb|AAB40810.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|1786827|gb|AAC73711.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. MG1655] gi|13360107|dbj|BAB34072.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. Sakai] gi|24050767|gb|AAN42174.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 301] gi|30040312|gb|AAP16045.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 2457T] gi|73854622|gb|AAZ87329.1| regulator of nucleoside diphosphate kinase [Shigella sonnei Ss046] gi|81244469|gb|ABB65177.1| regulator of nucleoside diphosphate kinase [Shigella boydii Sb227] gi|91071231|gb|ABE06112.1| regulator of nucleoside diphosphate kinase [Escherichia coli UTI89] gi|110342432|gb|ABG68669.1| regulator of nucleoside diphosphate kinase [Escherichia coli 536] gi|110614153|gb|ABF02820.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 5 str. 8401] gi|115511954|gb|ABJ00029.1| regulator of nucleoside diphosphate kinase [Escherichia coli APEC O1] gi|157065786|gb|ABV05041.1| regulator of nucleoside diphosphate kinase [Escherichia coli HS] gi|169755959|gb|ACA78658.1| GreA/GreB family elongation factor [Escherichia coli ATCC 8739] gi|169888026|gb|ACB01733.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|169888127|gb|ACB01834.1| regulator of nucleoside diphosphate kinase [Escherichia coli str. K-12 substr. DH10B] gi|170519247|gb|ACB17425.1| regulator of nucleoside diphosphate kinase [Escherichia coli SMS-3-5] gi|187428788|gb|ACD08062.1| regulator of nucleoside diphosphate kinase [Shigella boydii CDC 3083-94] gi|187769767|gb|EDU33611.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4196] gi|188017705|gb|EDU55827.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4113] gi|188488378|gb|EDU63481.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638] gi|189002814|gb|EDU71800.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4076] gi|189357941|gb|EDU76360.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4401] gi|189360881|gb|EDU79300.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4486] gi|189369200|gb|EDU87616.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4501] gi|189373770|gb|EDU92186.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC869] gi|189379372|gb|EDU97788.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC508] gi|190902608|gb|EDV62341.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A] gi|190907446|gb|EDV67043.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11] gi|192957577|gb|EDV88022.1| regulator of nucleoside diphosphate kinase [Escherichia coli E110019] gi|194413971|gb|EDX30248.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171] gi|194423609|gb|EDX39599.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1] gi|208729275|gb|EDZ78876.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4206] gi|208732992|gb|EDZ81680.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4045] gi|208737142|gb|EDZ84826.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4042] gi|209158827|gb|ACI36260.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC4115] gi|209777348|gb|ACI86986.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777350|gb|ACI86987.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777352|gb|ACI86988.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777354|gb|ACI86989.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209777356|gb|ACI86990.1| regulator of nucleoside diphosphate kinase [Escherichia coli] gi|209911128|dbj|BAG76202.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE11] gi|215263724|emb|CAS08059.1| regulator of nucleoside diphosphate kinase [Escherichia coli O127:H6 str. E2348/69] gi|217321314|gb|EEC29738.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14588] gi|218350783|emb|CAU96475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 55989] gi|218359921|emb|CAQ97464.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI1] gi|218364319|emb|CAR01992.1| regulator of nucleoside diphosphate kinase [Escherichia coli S88] gi|218368969|emb|CAR16723.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI39] gi|218425998|emb|CAR06815.1| regulator of nucleoside diphosphate kinase [Escherichia coli ED1a] gi|218431041|emb|CAR11917.1| regulator of nucleoside diphosphate kinase [Escherichia coli UMN026] gi|222032371|emb|CAP75110.1| Regulator of nucleoside diphosphate kinase [Escherichia coli LF82] gi|226898627|gb|EEH84886.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA] gi|227838496|gb|EEJ48962.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972] gi|238863432|gb|ACR65430.1| regulator of nucleoside diphosphate kinase [Escherichia coli BW2952] gi|242376386|emb|CAQ31084.1| regulator of nucleoside diphosphate kinase [Escherichia coli BL21(DE3)] gi|253325449|gb|ACT30051.1| GreA/GreB family elongation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972592|gb|ACT38263.1| nucleoside diphosphate kinase regulator [Escherichia coli B str. REL606] gi|253976786|gb|ACT42456.1| nucleoside diphosphate kinase regulator [Escherichia coli BL21(DE3)] gi|254591177|gb|ACT70538.1| regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. TW14359] gi|257752512|dbj|BAI24014.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O26:H11 str. 11368] gi|257763115|dbj|BAI34610.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O111:H- str. 11128] gi|260450221|gb|ACX40643.1| GreA/GreB family elongation factor [Escherichia coli DH1] gi|281177760|dbj|BAI54090.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE15] gi|281599915|gb|ADA72899.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri 2002017] gi|284920411|emb|CBG33472.1| regulator of nucleoside diphosphate kinase [Escherichia coli 042] gi|290761436|gb|ADD55397.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7 str. CB9615] gi|291325250|gb|EFE64665.1| hypothetical protein ECCG_03607 [Escherichia coli B088] gi|291428459|gb|EFF01484.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412] gi|291433965|gb|EFF06938.1| kinase regulator protein [Escherichia coli B185] gi|291471914|gb|EFF14397.1| kinase regulator [Escherichia coli B354] gi|294491723|gb|ADE90479.1| regulator of nucleoside diphosphate kinase [Escherichia coli IHE3034] gi|298279347|gb|EFI20855.1| nucleoside diphosphate kinase regulator protein [Escherichia coli FVEC1302] gi|299878075|gb|EFI86286.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 196-1] gi|300304408|gb|EFJ58928.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 200-1] gi|300314248|gb|EFJ64032.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 175-1] gi|300355468|gb|EFJ71338.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 198-1] gi|300396083|gb|EFJ79621.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 69-1] gi|300400545|gb|EFJ84083.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 84-1] gi|300407175|gb|EFJ90713.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 45-1] gi|300412422|gb|EFJ95732.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 115-1] gi|300416713|gb|EFK00024.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 182-1] gi|300449633|gb|EFK13253.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 116-1] gi|300455463|gb|EFK18956.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 21-1] gi|300460680|gb|EFK24173.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 187-1] gi|300524426|gb|EFK45495.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 119-7] gi|300529570|gb|EFK50632.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 107-1] gi|300842638|gb|EFK70398.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 124-1] gi|300844536|gb|EFK72296.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 78-1] gi|301077633|gb|EFK92439.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 146-1] gi|305853720|gb|EFM54159.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101] gi|306907375|gb|EFN37880.1| GreA/GreB family elongation factor [Escherichia coli W] gi|307552481|gb|ADN45256.1| regulator of nucleoside diphosphate kinase [Escherichia coli ABU 83972] gi|307627951|gb|ADN72255.1| nucleoside diphosphate kinase regulator [Escherichia coli UM146] gi|308120899|gb|EFO58161.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 145-7] gi|310337337|gb|EFQ02475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1827-70] gi|312290146|gb|EFR18029.1| regulator of nucleoside diphosphate kinase [Escherichia coli 2362-75] gi|312945158|gb|ADR25985.1| nucleoside diphosphate kinase regulator [Escherichia coli O83:H1 str. NRG 857C] gi|313647021|gb|EFS11477.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a str. 2457T] gi|315059866|gb|ADT74193.1| regulator of nucleoside diphosphate kinase [Escherichia coli W] gi|315135277|dbj|BAJ42436.1| regulator of nucleoside diphosphate kinase [Escherichia coli DH1] gi|315255090|gb|EFU35058.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 85-1] gi|315287015|gb|EFU46430.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 110-3] gi|315292113|gb|EFU51465.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 153-1] gi|315299131|gb|EFU58385.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 16-3] gi|315616473|gb|EFU97090.1| regulator of nucleoside diphosphate kinase [Escherichia coli 3431] gi|320178397|gb|EFW53365.1| Regulator of nucleoside diphosphate kinase [Shigella boydii ATCC 9905] gi|320185416|gb|EFW60186.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri CDC 796-83] gi|320193018|gb|EFW67658.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. EC1212] gi|320194208|gb|EFW68840.1| Regulator of nucleoside diphosphate kinase [Escherichia coli WV_060327] gi|320198263|gb|EFW72867.1| Regulator of nucleoside diphosphate kinase [Escherichia coli EC4100B] gi|320638060|gb|EFX07824.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. G5101] gi|320643466|gb|EFX12636.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H- str. 493-89] gi|320648801|gb|EFX17428.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H- str. H 2687] gi|320654387|gb|EFX22434.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660068|gb|EFX27598.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320664865|gb|EFX32000.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7 str. LSU-61] gi|323153670|gb|EFZ39918.1| regulator of nucleoside diphosphate kinase [Escherichia coli EPECa14] gi|323158937|gb|EFZ44948.1| regulator of nucleoside diphosphate kinase [Escherichia coli E128010] gi|323164059|gb|EFZ49867.1| regulator of nucleoside diphosphate kinase [Shigella sonnei 53G] gi|323170735|gb|EFZ56385.1| regulator of nucleoside diphosphate kinase [Escherichia coli LT-68] gi|323179914|gb|EFZ65471.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1180] gi|323184899|gb|EFZ70267.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1357] gi|323191248|gb|EFZ76512.1| regulator of nucleoside diphosphate kinase [Escherichia coli RN587/1] gi|323379570|gb|ADX51838.1| GreA/GreB family elongation factor [Escherichia coli KO11] gi|323938372|gb|EGB34626.1| hypothetical protein ERCG_00408 [Escherichia coli E1520] gi|323943025|gb|EGB39184.1| hypothetical protein ERDG_00362 [Escherichia coli E482] gi|323945085|gb|EGB41147.1| hypothetical protein EREG_03269 [Escherichia coli H120] gi|323952811|gb|EGB48679.1| hypothetical protein ERKG_00584 [Escherichia coli H252] gi|323958369|gb|EGB54075.1| hypothetical protein ERLG_00359 [Escherichia coli H263] gi|323963179|gb|EGB58747.1| hypothetical protein ERGG_00365 [Escherichia coli H489] gi|323972149|gb|EGB67362.1| hypothetical protein ERHG_01878 [Escherichia coli TA007] gi|323976407|gb|EGB71497.1| hypothetical protein ERFG_02843 [Escherichia coli TW10509] gi|324006326|gb|EGB75545.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 57-2] gi|324010532|gb|EGB79751.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 60-1] gi|324016122|gb|EGB85341.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS 117-3] gi|324116685|gb|EGC10600.1| hypothetical protein ERBG_03361 [Escherichia coli E1167] gi|326341362|gb|EGD65154.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. 1044] gi|326345859|gb|EGD69598.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O157:H7 str. 1125] gi|330910372|gb|EGH38882.1| regulator of nucleoside diphosphate kinase [Escherichia coli AA86] gi|331037909|gb|EGI10129.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736] gi|331044519|gb|EGI16646.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605] gi|331049897|gb|EGI21955.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718] gi|331054885|gb|EGI26894.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206] gi|331060396|gb|EGI32360.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143] gi|331066186|gb|EGI38070.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271] gi|331070618|gb|EGI41981.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280] gi|331080709|gb|EGI51883.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299] gi|332094282|gb|EGI99333.1| regulator of nucleoside diphosphate kinase [Shigella boydii 5216-82] gi|332097740|gb|EGJ02714.1| regulator of nucleoside diphosphate kinase [Shigella boydii 3594-74] gi|332104099|gb|EGJ07445.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9] gi|332341957|gb|AEE55291.1| regulator of nucleoside diphosphate kinase [Escherichia coli UMNK88] gi|332760859|gb|EGJ91147.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 4343-70] gi|332761226|gb|EGJ91512.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2747-71] gi|332763907|gb|EGJ94145.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-671] gi|332768128|gb|EGJ98313.1| prokaryotic transcription elongation factor GreA/GreB [Shigella flexneri 2930-71] gi|333007955|gb|EGK27431.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-218] gi|333010014|gb|EGK29449.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-272] gi|333020847|gb|EGK40107.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-227] gi|333021406|gb|EGK40656.1| regulator of nucleoside diphosphate kinase [Shigella flexneri K-304] Length = 136 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|194432543|ref|ZP_03064829.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 1012] gi|194419104|gb|EDX35187.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 1012] gi|332096848|gb|EGJ01838.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae 155-74] Length = 136 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|296447424|ref|ZP_06889349.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] gi|296255044|gb|EFH02146.1| GreA/GreB family elongation factor [Methylosinus trichosporium OB3b] Length = 155 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 24/149 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G +I+ EL Q E +A GD R A Sbjct: 30 VTPEGLAQIEAELARLQSE---------LDAAQQGDDKHV--LARVTRDLRYWNARRASA 78 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+V ++ FG V + ++ G +++Y++VG+ EAD GL+ +P+ Sbjct: 79 ELVHAIADV--------GQVRFGHRVVVEDEK-GQRRSYRLVGEDEADPSKGLIPYVAPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 A+ L+GK +GD V G + IL + Sbjct: 130 AKELLGKSVGDSAEV----GRHSATILDI 154 >gi|77761289|ref|YP_244463.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 143 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P Sbjct: 43 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPAG 102 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G +G I APGG Sbjct: 103 TALLGLSVGQSIDWRAPGG 121 >gi|297518602|ref|ZP_06936988.1| nucleoside diphosphate kinase regulator [Escherichia coli OP50] Length = 136 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVHPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|241765275|ref|ZP_04763255.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] gi|241365031|gb|EER59928.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] Length = 137 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL+ + RA+V+ + + + +TV +G + +V ++ D + +SI Sbjct: 33 AELQAELDRADVVAPEEIPPNVVTMNSTVQFTMLETGKEFCLTLVYPRDMDGSADRISIL 92 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 +P+ AL+G +GD ++ PGG+ T + +++ Sbjct: 93 APVGGALLGLSVGDELAWPGPGGKSMTVRVKAIVY 127 >gi|220934850|ref|YP_002513749.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996160|gb|ACL72762.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7] Length = 137 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA V++ S + + + V + G + +V D +S+ +PI A Sbjct: 39 LERANVVEPSQVPPTLVTMNSRVRFRVEPEGREFQRTLVYPSGMDGDEEKISVLAPIGSA 98 Query: 130 LIGKELGDIISVNAP-GGEKTYEILQVLW 157 L+G +GD I+ P GGE I+++L+ Sbjct: 99 LLGLSVGDSIAWPTPKGGEMNVRIMEILY 127 >gi|193063403|ref|ZP_03044493.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22] gi|260842837|ref|YP_003220615.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O103:H2 str. 12009] gi|192930987|gb|EDV83591.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22] gi|257757984|dbj|BAI29481.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli O103:H2 str. 12009] Length = 136 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE-LENIITRAEVIDISTMSGDR 85 RP II +A L E Y R+A+ L + RA++ M D Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGL---------RIADALNAELDRAQMCSPEEMPHDV 53 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V + G+ + +V + + +S+ +P+ AL+G +GD I PG Sbjct: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 Query: 146 GEKT-YEILQVLW 157 G T E+L++ + Sbjct: 114 GVATHLEVLELEY 126 >gi|254822184|ref|ZP_05227185.1| transcription elongation factor GreA [Mycobacterium intracellulare ATCC 13950] Length = 155 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 14/141 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + ++++Q+EL + + + A G S N + A + R+ Sbjct: 8 WISPQAYERLQRELATLR---------ELCDTNAVG--SANDDNSIAVQRAWQV--RIRR 54 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++ A V + G G +++ ++G+ + + + SI SP Sbjct: 55 IHELLVDAVVGEDPPDDG-IAEPGMVLTIRYDDTGEVETFLFSVRGAEYGGMEVYSIRSP 113 Query: 126 IARALIGKELGDIISVNAPGG 146 + A+ G G+ + P G Sbjct: 114 LGAAIAGARPGEQRTYTLPSG 134 >gi|254774710|ref|ZP_05216226.1| transcription elongation factor GreA [Mycobacterium avium subsp. avium ATCC 25291] Length = 155 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + ++++Q+EL + + + A G S N E A + R+ Sbjct: 8 WISPQAYERLQRELATLR---------ELCDTNAVG--SANDENSIAVQRAWQV--RIRR 54 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + ++ A V + G G +++ ++G+ + + + SI SP Sbjct: 55 IHELLVDAVVGEDPPDDG-IAEPGMVLTIRYDDTGEVETFLFSVRGAEYGGMEVYSIRSP 113 Query: 126 IARALIGKELGDIISVNAPGGE 147 + A+ G G+ + P G Sbjct: 114 LGAAIAGARPGEQRTYTLPSGV 135 >gi|114320917|ref|YP_742600.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii MLHE-1] gi|114227311|gb|ABI57110.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii MLHE-1] Length = 137 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ERP I+ + +A DL ++ AEL+ + RAE+++ + Sbjct: 3 ERPNIVISTLDADRLYDLLDSLPAGGVPSK--------AELKAELERAEIVEPEDIPPTV 54 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144 ++ +TV +S ++ +V ++ D SG +S+ +P+ AL+G GD I P Sbjct: 55 VSMNSTVRFRVASSSEEFTLTLVYPKDMDATSGKISVLAPVGSALLGLSQGDEIEWPKPG 114 Query: 145 GGEKTYEILQVLW 157 GG I ++L+ Sbjct: 115 GGVLRVRIEEILY 127 >gi|260062078|ref|YP_003195158.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata HTCC2501] gi|88783640|gb|EAR14811.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata HTCC2501] Length = 139 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 A Y A Q+ + +L + A+++D + M D + F + +++ +G + Q Sbjct: 24 AHYHDATLWQS-----IQKLLTELDSAKIVDEAEMQNDVVRFHSIITVT-SENGWSRRVQ 77 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +V E DV +SI +P+ AL G GD +S P G K I +V Sbjct: 78 LVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSGPKRLRIEKVE 127 >gi|333007715|gb|EGK27192.1| regulator of nucleoside diphosphate kinase [Shigella flexneri VA-6] Length = 136 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLRDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|320352605|ref|YP_004193944.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM 2032] gi|320121107|gb|ADW16653.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM 2032] Length = 137 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +L +++ V+ M + + + V L + + G+ +V +E D Q VSI Sbjct: 34 IRKLHYDMSQGHVVSAGEMPSNVVTTHSWVVLCDLSDGEVFGLTLVFPEEVDSQGNRVSI 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S I ALIG++ GD I+ + P G + I + Sbjct: 94 LSSIGAALIGRQKGDTIAYSTPSGIRRCLITTI 126 >gi|307729138|ref|YP_003906362.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] gi|307583673|gb|ADN57071.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003] Length = 139 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++++ RA ++D + + + + +LV++ SG+ + +V EAD G +++ S Sbjct: 36 MLDDVLERAVIVDSREIPANVLTMNSQATLVDEASGEHMTWTVVYPPEADFAHGRLNVFS 95 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 P+ AL+G + G+ I P G EK ++ ++L+ Sbjct: 96 PVGLALLGAKRGEQIRFMPPSGDEKVLKLEKILY 129 >gi|118463685|ref|YP_881203.1| transcription elongation factor GreA [Mycobacterium avium 104] gi|118164972|gb|ABK65869.1| transcription elongation factor GreA [Mycobacterium avium 104] Length = 155 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 56/141 (39%), Gaps = 14/141 (9%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 ++ + +++Q+EL + + + A G ++ E A + R+ Sbjct: 8 WISPQAHERLQRELATLR---------ELRDTSAVGSATD--ENSLAVQRAWQL--RIHR 54 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 + +++ A V D G G +++ ++G+ + + + + + SI SP Sbjct: 55 IHDLLVNAVVGDDPPDDG-VAEPGMVLTIRYDDTGEIETFLLSVRGAEYDGTEVYSIRSP 113 Query: 126 IARALIGKELGDIISVNAPGG 146 + A+ G G+ S P G Sbjct: 114 LGAAIAGARPGEQRSYILPNG 134 >gi|146299949|ref|YP_001194540.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] gi|146154367|gb|ABQ05221.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] Length = 132 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 47 AEYQAAKEL-----QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 ++YQ +EL + N +L + RA + S + I + V++ + + Sbjct: 10 SDYQFLRELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIEDVKANK 69 Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + QIV ADV+ +SI +P++ A+IG + D + P G KT +I+ V Sbjct: 70 QMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKTLKIVAV 123 >gi|325914289|ref|ZP_08176639.1| transcription elongation factor [Xanthomonas vesicatoria ATCC 35937] gi|325539544|gb|EGD11190.1| transcription elongation factor [Xanthomonas vesicatoria ATCC 35937] Length = 172 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA ++ + GD + + + ++ G++ +V EADVQ G +S+ +P+ Sbjct: 69 DELGRARLLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 128 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156 AL+G +G I P G + + V Sbjct: 129 SALLGLSVGQSIDWRTPDGRDLRLRVTAVQ 158 >gi|319795584|ref|YP_004157224.1| grea/greb family elongation factor [Variovorax paradoxus EPS] gi|315598047|gb|ADU39113.1| GreA/GreB family elongation factor [Variovorax paradoxus EPS] Length = 135 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L +++ AEV+ + D + + LV+ ++G ++ + ++A+ +G +S+ Sbjct: 31 AHLADLLASAEVMSSRAVPCDVVTMNSRAELVDVHTGRRQTLTVCFPKDAEPAAGFISVL 90 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 SP+ +L+G +GDI + P G+ E+ VL+ Sbjct: 91 SPVGSSLLGLRVGDIARWHTPNGDDCAAEVAAVLF 125 >gi|237730594|ref|ZP_04561075.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2] gi|226906133|gb|EEH92051.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2] Length = 136 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN + RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPATMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E++++ + Sbjct: 115 TSTHLEVIELEY 126 >gi|156934868|ref|YP_001438784.1| nucleoside diphosphate kinase regulator [Cronobacter sakazakii ATCC BAA-894] gi|156533122|gb|ABU77948.1| hypothetical protein ESA_02716 [Cronobacter sakazakii ATCC BAA-894] Length = 136 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +I +A L E + LN+ + RA ++ M D + Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+ +V Q A +S+ +P+ AL+G +GD I P G Sbjct: 55 TMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114 Query: 147 -EKTYEILQVLW 157 E E+L++L+ Sbjct: 115 SETHIEVLELLY 126 >gi|66575033|gb|AAY50443.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 135 Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P Sbjct: 35 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPAG 94 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G +G I APGG Sbjct: 95 TALLGLSVGQSIDWRAPGG 113 >gi|149174289|ref|ZP_01852916.1| nucleoside diphosphate kinase regulator protein, putative [Planctomyces maris DSM 8797] gi|148846834|gb|EDL61170.1| nucleoside diphosphate kinase regulator protein, putative [Planctomyces maris DSM 8797] Length = 137 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 30/155 (19%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 KI +T + ++Q L + N Y + + Sbjct: 4 QKIFITKTDYQRLQNLL-----------------LSDFTQAIGNKPYLSGLHAE------ 40 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + A +++ + D + +TV L + + + + Y +V Q+A+++ G +SI Sbjct: 41 -------LAVAHIVESEEIPADIVTMNSTVRLRDLETDELETYTLVYPQDANIKEGKLSI 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +PI A++G +GD + A G + ++L+ Sbjct: 94 LTPIGTAILGYRIGDQLRSRALAGGSKIRVEEILF 128 >gi|167589792|ref|ZP_02382180.1| GreA/GreB family elongation factor [Burkholderia ubonensis Bu] Length = 132 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 58/101 (57%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N A L+ ++ RA+++ + + + + ++L+++ + +K + IV +EA+++ Sbjct: 22 HNPRFQAMLDALLERADIVQPDAIKANVVTMNSQITLLDETNHEKTTWTIVYPEEANLEQ 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 G +++ SP+ AL+G + G ++ V P G + ++ ++++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVMQPSGTEKLMKVAEIVF 122 >gi|311280477|ref|YP_003942708.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1] gi|308749672|gb|ADO49424.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1] Length = 136 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + ++ LN+ + RA++ +M D + Sbjct: 3 RPAIIINEFDAERIDRLLEQPAWASSPVADALND--------ELDRAQMCAPESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + + V + +G+++ +V + S +S+ +P+ AL+G +G I P G Sbjct: 55 SMNSKVRFRDLTTGEERVRTLVFPTQMTDSSTQLSVLAPVGAALLGLRVGSTIHWELPNG 114 Query: 147 EKT-YEILQVLW 157 T E+L++L+ Sbjct: 115 TATHLEVLELLY 126 >gi|74095577|emb|CAJ27343.1| conserved hypothetical protein [Cronobacter sakazakii] Length = 136 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +I +A L E + LN+ + RA ++ M D + Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+ +V Q A +S+ +P+ AL+G +GD I P G Sbjct: 55 TMNSRVKFSDLASGETYERLLVYPQNAGSSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114 Query: 147 -EKTYEILQVLW 157 E E+L++L+ Sbjct: 115 SETHIEVLELLY 126 >gi|325528774|gb|EGD05833.1| GreA/GreB family elongation factor [Burkholderia sp. TJI49] Length = 132 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ Sbjct: 22 HNPRFQTMLDTLLERADIVRPDAIKANVVTMNSQITLLDETTQEQATWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ ++++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVTQPSGAEKLMKVAEIVF 122 >gi|283834084|ref|ZP_06353825.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae ATCC 29220] gi|291070230|gb|EFE08339.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae ATCC 29220] Length = 136 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN + RA++ TM D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPETMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V S +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E++++ + Sbjct: 115 TSTHLEVIELEY 126 >gi|238893687|ref|YP_002918421.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae NTUH-K2044] gi|238546003|dbj|BAH62354.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 136 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + + LNE + RA+++ M D + Sbjct: 3 RPAIIINELDAERIDRLLEQPAFANSPVADALNE--------ELDRAQMLAPEAMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG Sbjct: 55 TMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++L+ Sbjct: 115 ASTHLEVLELLY 126 >gi|212711074|ref|ZP_03319202.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM 30120] gi|212686242|gb|EEB45770.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM 30120] Length = 136 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E A Y + LN+ + RA+++ + D + Sbjct: 4 PTIIINDLDAERLDALMEQAAYAGTPVAEALND--------ELDRADIVSPQEIPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 56 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115 Query: 148 KT-YEILQVLW 157 +T +L++++ Sbjct: 116 ETRVRVLEIVY 126 >gi|85715886|ref|ZP_01046864.1| transcription elongation factor GreA/GreB region [Nitrobacter sp. Nb-311A] gi|85697293|gb|EAQ35173.1| transcription elongation factor GreA/GreB region [Nitrobacter sp. Nb-311A] Length = 150 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 5/137 (3%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST--- 80 Q P I + + L+E A + + + E I +ID + Sbjct: 6 QTRLPAIAISAHDIDRLRHLAEAAMEKYPTTAE-FLAREIDRAEIIPADRSIIDDISGLR 64 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + + + V+ V+ SG+K+ +V ++ADV +G +SI SPI ALIG G I Sbjct: 65 RKINLVTMQSEVTFVDDISGEKRKVVLVYPEDADVDAGKISILSPIGAALIGLSTGQSIE 124 Query: 141 VNAP-GGEKTYEILQVL 156 P GG ++ ++ V Sbjct: 125 FQTPSGGWRSLTVMAVS 141 >gi|330820196|ref|YP_004349058.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3] gi|327372191|gb|AEA63546.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3] Length = 132 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 51 AAKELQNLNEGRM-AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 A E + R+ A L+ ++ RA++++ M + + + +L ++ + + + +V Sbjct: 14 ARLEKHAERDTRLQAMLDTLLERADIVNADAMKANVVTMNSQFTLTDEATHEAITWTLVY 73 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +A +G +++ SP+ AL+G G+ +++ P G + +++ Sbjct: 74 PDQARSDAGRLNVFSPVGMALLGARQGEHVNITLPNGVAGRMTVSAIVY 122 >gi|91975331|ref|YP_567990.1| transcription elongation factor GreA/GreB region [Rhodopseudomonas palustris BisB5] gi|91681787|gb|ABE38089.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB5] Length = 138 Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 +Q EL P I + + +++E A + + L I RAE Sbjct: 5 LQSEL--------PPITLRMCDVERLRNIAEAASDKYPQT--------ADFLAREIERAE 48 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 ++ S + I G+ V+ + SG ++ +V + ADV++ +SI +PI ALIG Sbjct: 49 ILPDSQLLPGLIMMGSEVTFRDDISGQERCVTLVYPEAADVEANKISIITPIGAALIGLS 108 Query: 135 LGDIISVNAPGGE-KTYEIL 153 G I PGG ++ ++ Sbjct: 109 AGQTIEFQTPGGRWRSLTVI 128 >gi|183222143|ref|YP_001840139.1| putative transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912206|ref|YP_001963761.1| transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776882|gb|ABZ95183.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780565|gb|ABZ98863.1| Putative transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 138 Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 53/103 (51%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 +N + + +L I RA+ +D + + + + + + + K +++V ++++ Sbjct: 26 KRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVYPEDSN 85 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + +SI +PIA A IG + GD+I N P G ++I ++ + Sbjct: 86 LDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKY 128 >gi|152995644|ref|YP_001340479.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] gi|150836568|gb|ABR70544.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] Length = 137 Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 +RP+I + +A + ++ Y +L+ I RAE+++ M + Sbjct: 2 MQRPQITISSLDAVRLEKILDSLSYSQFPNK--------DDLQEEINRAEIVEPRDMPDN 53 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + +TV+ +S + + +V ++A+ VS+ +P+ AL+G + GD I P Sbjct: 54 IVTMNSTVTFKVLSSEKEFSKTLVYPKDANGAEDTVSVLAPVGSALLGLKEGDQIDWPKP 113 Query: 145 GGEK-TYEILQVLW 157 G+ + I++V + Sbjct: 114 NGDVLSVVIMKVDY 127 >gi|255531969|ref|YP_003092341.1| transcription elongation factor GreA/GreB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344953|gb|ACU04279.1| transcription elongation factor GreA/GreB domain protein [Pedobacter heparinus DSM 2366] Length = 125 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L+ + A + + D + + + +G + +++V +EA++++ VS+ + Sbjct: 32 KLQAELKAATIYTEEELPSDVVCLKSEARIANVKTGKEFTFKLVMPEEANIKAQKVSVFA 91 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 PI AL G GD I+ P G + ++IL+V Sbjct: 92 PIGIALFGYRTGDSINWEMPDGIQEFKILEV 122 >gi|300790568|ref|YP_003770859.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] gi|299800082|gb|ADJ50457.1| transcription elongation factor GreA [Amycolatopsis mediterranei U32] Length = 151 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 10/148 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ ++++E+ + +R + E GD ++ A+ E + ++A+L Sbjct: 9 LSPAARSQLEKEIENLRA-QRAALAPQPGEQERTGDAADQADVIDRAEAAARLDRQIADL 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + ++ G VSL + GD++ +Q+V D + ++ SP+ Sbjct: 68 AAKMEHG------GYGNSQLPDGTVVSLRFAD-GDEETFQVVTVPGEDADA--ITSDSPL 118 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 AL+G + GD I+ P G+ +++ Sbjct: 119 GLALVGAKAGDEITYRTPRGDAKATVVK 146 >gi|238799365|ref|ZP_04642803.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii ATCC 43969] gi|238716795|gb|EEQ08673.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii ATCC 43969] Length = 152 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + Q LNE + RAE++ Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V + N+ ++ +V + +S+ +P+ AL+G + Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 120 Query: 137 DIISVNAPGGEKT-YEILQVLW 157 D IS PGG++T +L++L+ Sbjct: 121 DEISWKLPGGDETRITVLELLY 142 >gi|291326552|ref|ZP_06124973.2| regulator of nucleoside diphosphate kinase [Providencia rettgeri DSM 1131] gi|291313526|gb|EFE53979.1| regulator of nucleoside diphosphate kinase [Providencia rettgeri DSM 1131] Length = 143 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E Y + LN+ + RA+++ + D + Sbjct: 11 PTIIINDLDAERLDALMEQPAYAGTPVAEALND--------ELDRADILSPQEIPADVVT 62 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 63 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWELPNGV 122 Query: 148 KT-YEILQVLW 157 +T +L++++ Sbjct: 123 QTRVRVLEIVY 133 >gi|319784595|ref|YP_004144071.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170483|gb|ADV14021.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 157 Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 + R + + D+ AE +A +E + + AE+ Sbjct: 25 QHRNLVTERGLAQIEENLADLRDILAKAERKADRERIAVVSRDLRYWTARRESAELSVPE 84 Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 S D + FG V++ E + G K +++IVG+ EAD G +S SP+A AL GK++GD+ Sbjct: 85 PGS-DVVRFGMGVTI-ESDDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKIGDLA 142 Query: 140 SVNAPGGEKTYEILQ 154 SVN K +EI++ Sbjct: 143 SVNG----KEWEIVK 153 >gi|254254276|ref|ZP_04947593.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia dolosa AUO158] gi|124898921|gb|EAY70764.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia dolosa AUO158] Length = 132 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N A L+ ++ RA+++ + + + + ++LV++ + ++ + IV A+++ Sbjct: 22 HNPRFQAMLDTLLERADIVRPDAIKANVVTMNSQITLVDEATQEQATWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ ++++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGIEKLMKVAEIVF 122 >gi|157146775|ref|YP_001454094.1| nucleoside diphosphate kinase regulator [Citrobacter koseri ATCC BAA-895] gi|157083980|gb|ABV13658.1| hypothetical protein CKO_02549 [Citrobacter koseri ATCC BAA-895] Length = 136 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPEAMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + +S+ +P+ AL+G +GD I + PGG Sbjct: 55 TMNSRVKFRNLSDGEIRVRTLVYPANMTDSNTQLSVMAPVGAALLGLRVGDTIHWDLPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 ASTHLEVLELEY 126 >gi|90420487|ref|ZP_01228394.1| possible transcription elongation factor, GreA/GreB family [Aurantimonas manganoxydans SI85-9A1] gi|90335215|gb|EAS48968.1| possible transcription elongation factor, GreA/GreB family [Aurantimonas manganoxydans SI85-9A1] Length = 158 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 24/150 (16%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G I E+ ER + + A +++ + Y A+ Sbjct: 29 VTPRGLSLIDAEIAALN--ERKEAARQADDKIAIANINRDLRYWNARRATAELIR----- 81 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 +G FG+ VS+ E+ G + + IVG EAD +GL+S SP+ Sbjct: 82 ------------PRDTGGTAQFGSVVSI-EREDGRTQQFTIVGIDEADPSAGLISYLSPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 AR+LIG+ +GDI+ G EI+ + Sbjct: 129 ARSLIGRTVGDIVR----AGTADAEIIAIS 154 >gi|206580755|ref|YP_002239725.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae 342] gi|288936567|ref|YP_003440626.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|290510377|ref|ZP_06549747.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55] gi|206569813|gb|ACI11589.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae 342] gi|288891276|gb|ADC59594.1| GreA/GreB family elongation factor [Klebsiella variicola At-22] gi|289777093|gb|EFD85091.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55] Length = 136 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + LN+ + RA+++ M D + Sbjct: 3 RPAIIINELDAERIDRLLEQPAFANLPVADALND--------ELDRAQMLAPEAMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG Sbjct: 55 TMNSKVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++L+ Sbjct: 115 ASTHLEVLELLY 126 >gi|152969224|ref|YP_001334333.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041289|ref|ZP_06014500.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006064|ref|ZP_08305482.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3] gi|150954073|gb|ABR76103.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041405|gb|EEW42465.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536002|gb|EGF62415.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3] Length = 140 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + + LNE + RA+++ M D + Sbjct: 7 RPAIIINELDAERIDRLLEQPAFANSPVADALNE--------ELDRAQMLAPEAMPHDVV 58 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG Sbjct: 59 TMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 118 Query: 147 EKT-YEILQVLW 157 T E+L++L+ Sbjct: 119 ASTHLEVLELLY 130 >gi|221065879|ref|ZP_03541984.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1] gi|220710902|gb|EED66270.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1] Length = 135 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+V+D + M + + +TV G +V ++ D + VSI +P Sbjct: 34 LEAELDRADVLDPAEMPANVVTMNSTVRFTMLEIGKSSTLTLVYPKDMDGSADKVSIFAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G +GD + +P G+ T + + + Sbjct: 94 VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125 >gi|146310806|ref|YP_001175880.1| nucleoside diphosphate kinase regulator [Enterobacter sp. 638] gi|145317682|gb|ABP59829.1| GreA/GreB family elongation factor [Enterobacter sp. 638] Length = 136 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + + LN+ + RA++ +M D + Sbjct: 3 RPTIIINELDAERIDRLLEKPAFASLPIADALND--------ELDRAQMCTAESMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG++ +V + S +S+ +P+ AL+G GD I PGG Sbjct: 55 TMNSQVRFRDLTSGEEHTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114 Query: 147 -EKTYEILQVLW 157 E+L++L+ Sbjct: 115 ASAHLEVLELLY 126 >gi|114563174|ref|YP_750687.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB 400] gi|114334467|gb|ABI71849.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB 400] Length = 137 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ELE + RA ++D + + +TV + S ++ +V ++ D++ +SI Sbjct: 32 ISELEEELARAIIVDPKEIPTTIVTMNSTVKFTVEASREEFLMTLVYPKDLDLKGDKISI 91 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G GD I P GG I ++ + Sbjct: 92 LAPVGSALLGLAQGDQIEWPKPGGGLIKITINEIFY 127 >gi|289208904|ref|YP_003460970.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] gi|288944535|gb|ADC72234.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] Length = 136 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A+LE + RA+V+D + G + + V SG++ + +V ++ D G +SI Sbjct: 32 ADLEAELDRADVVDSREIPGTVVTMNSKVRFRVTESGEEFSLTLVYPRDVDDSGGTLSIL 91 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G GD I P GG+ I V + Sbjct: 92 APVGSALLGLSEGDEIEWPRPGGGQMHVRIEAVEY 126 >gi|256829378|ref|YP_003158106.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM 4028] gi|256578554|gb|ACU89690.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM 4028] Length = 137 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA ++D + + +TV +G++ +V D Q +SI +P Sbjct: 35 LEEELDRARIVDPKNVPPTVVTMNSTVKFKLMPAGEEFCLTLVYPGRVDDQGTTISILAP 94 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G LGD I P GG I ++++ Sbjct: 95 VGSALLGLSLGDEIQWPRPGGGMLQVRIEEIVY 127 >gi|260597037|ref|YP_003209608.1| nucleoside diphosphate kinase regulator [Cronobacter turicensis z3032] gi|260216214|emb|CBA29098.1| Regulator of nucleoside diphosphate kinase [Cronobacter turicensis z3032] Length = 136 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP +I +A L E + LN+ + RA ++ M D + Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + SG+ +V Q A +S+ +P+ AL+G +GD I P G Sbjct: 55 TMNSRVKFRDLASGETYERLLVYPQNAGNSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114 Query: 147 -EKTYEILQVLW 157 E E+L++L+ Sbjct: 115 SETHIEVLELLY 126 >gi|82702067|ref|YP_411633.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] gi|82410132|gb|ABB74241.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC 25196] Length = 137 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL+ + RAE+++ + + +TV +SG +V ++ D +S+ Sbjct: 33 AELQAELERAEIVEPEQIPPTVVTMNSTVRFSIDSSGQDFRLTLVYPKDVDGSGNKISVL 92 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G GD I P GG I ++++ Sbjct: 93 APVGSALLGLSTGDEIEWPRPGGGTIKVRIEEIIY 127 >gi|88813317|ref|ZP_01128556.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231] gi|88789489|gb|EAR20617.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231] Length = 137 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAEV+ + + + V +NSG++ +V ++ + +S+ +P Sbjct: 35 LQAELDRAEVVPPEQVPPSVVTMNSAVRFSIENSGEEFCLTLVYPKDVGGNADRISVLAP 94 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G +GD + P GG ++++++ Sbjct: 95 VGSALLGLSVGDELEWPRPGGGVLRVRVVEIVY 127 >gi|78061874|ref|YP_371782.1| GreA/GreB family elongation factor [Burkholderia sp. 383] gi|77969759|gb|ABB11138.1| GreA/GreB family elongation factor [Burkholderia sp. 383] Length = 132 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ Sbjct: 22 HNPRFQTMLDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVTQPSGAEKLMKVAAIVF 122 >gi|42521926|ref|NP_967306.1| regulator of nucleoside diphosphate kinase [Bdellovibrio bacteriovorus HD100] gi|39574456|emb|CAE77960.1| regulator of nucleoside diphosphate kinase [Bdellovibrio bacteriovorus HD100] Length = 138 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 46 NAEYQAAKELQNLNEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 + ++ L + EG AE LE ++RA VI + + + + V +++ SG + Sbjct: 15 DQDFHRLSALVSQVEGPFAEALEEELSRANVIAQKEIPKNVVTMNSRVQFLDEVSGQESE 74 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 +V Q+A ++ G +SI +P+ AL+G +G I+ P G+ K ++ V + Sbjct: 75 MTLVYPQDAKLEEGRLSILAPVGIALLGLSVGQEINWKLPNGQSKKLKVQAVTY 128 >gi|309700850|emb|CBJ00147.1| regulator of nucleoside diphosphate kinase [Escherichia coli ETEC H10407] Length = 136 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II + L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDTERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 VATHLEVLELEY 126 >gi|238758339|ref|ZP_04619517.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC 35236] gi|238703462|gb|EEP96001.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC 35236] Length = 150 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + Q LNE + RAE++ Sbjct: 7 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 58 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V + NS ++ +V + +S+ +P+ AL+G + Sbjct: 59 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGMHVN 118 Query: 137 DIISVNAPGGEKT-YEILQVLW 157 D IS PGG++T +L++L+ Sbjct: 119 DEISWQLPGGDETRITVLELLY 140 >gi|319763041|ref|YP_004126978.1| transcription elongation factor grea/greb domain-containing protein [Alicycliphilus denitrificans BC] gi|330825121|ref|YP_004388424.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] gi|317117602|gb|ADV00091.1| transcription elongation factor GreA/GreB domain-containing protein [Alicycliphilus denitrificans BC] gi|329310493|gb|AEB84908.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] Length = 135 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 43/92 (46%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+V D M + + +TV SG +V +E D VSI +P Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKVSIFAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G +GD + +P G+ T + + + Sbjct: 94 VGIALLGLAVGDEFQMPSPTGQVTVRVDGIEF 125 >gi|39995942|ref|NP_951893.1| nucleoside diphosphate kinase regulator protein [Geobacter sulfurreducens PCA] gi|39982706|gb|AAR34166.1| nucleoside diphosphate kinase regulator protein, putative [Geobacter sulfurreducens PCA] gi|298504957|gb|ADI83680.1| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400] Length = 135 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LE+ + A ++D + + + + V L + + + +V +A++ G +SI Sbjct: 31 LQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPNDANIAEGKISI 90 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI A++G GD + + K I +VL+ Sbjct: 91 LSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLY 125 >gi|121595126|ref|YP_987022.1| GreA/GreB family elongation factor [Acidovorax sp. JS42] gi|120607206|gb|ABM42946.1| GreA/GreB family elongation factor [Acidovorax sp. JS42] Length = 135 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 43/92 (46%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+V D M + + +TV +G +V +E D VS+ +P Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G +GD + +P G+ T + + + Sbjct: 94 VGIALLGLGVGDEFQMPSPTGQVTVRVDAIEF 125 >gi|261344908|ref|ZP_05972552.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii DSM 4541] gi|282567048|gb|EFB72583.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii DSM 4541] Length = 136 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E Y + LN+ + RA+++ + D + Sbjct: 4 PTIIINDLDAERLDALMEQPAYAGTPVAEALND--------ELDRADIVSPQEIPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +T+ ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 56 MNSTIRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115 Query: 148 KT-YEILQVLW 157 +T +L++++ Sbjct: 116 ETRVRVLEIVY 126 >gi|221196032|ref|ZP_03569079.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M] gi|221202706|ref|ZP_03575725.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2] gi|221176640|gb|EEE09068.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2] gi|221182586|gb|EEE14986.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M] Length = 132 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 + ++ N A L+ ++ RAE++ + + + + ++L+++ + + + I Sbjct: 12 DVARLEKYAEHNPRFQAMLDTLLERAEIVRSDAIKANVVTMNSQITLLDEATQEPATWTI 71 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 V A+++ G +++ SP+ AL+G + G + V P G + ++ ++++ Sbjct: 72 VYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122 >gi|149243253|pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243254|pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243255|pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea gi|149243256|pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM Nitrosomonas Europaea Length = 141 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RAEV+D + + +TV ++S ++ +V ++ D +SI + Sbjct: 36 DLEAELARAEVVDPEEIPPTVVTXNSTVRFRVESSAEEFXLTLVYPKDVDTSGEKISILA 95 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ AL+G GD I P GG I++V + Sbjct: 96 PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 129 >gi|134293951|ref|YP_001117687.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4] gi|134137108|gb|ABO58222.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4] Length = 132 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA+++ + + + + + ++L+++ S ++ + IV A+++ Sbjct: 22 HNPRFQTMLDTLLERADIVQPNAVKANVVTMNSQITLLDETSQEQTTWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G + V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQSVKVMQPSGIEKLMKVAAIVF 122 >gi|240170745|ref|ZP_04749404.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC 12478] Length = 160 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGD-LSENAEYQAAKELQNLNEGRMA 64 ++S+ ++++Q++L AR D +N+ A ++Q + R+ Sbjct: 13 WISSQAYERLQRKLADL----------RQRSAREPADSDFDNS----APDVQRAWQTRIR 58 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 + +++ RA+V + G G +++ ++GD + + + + S S Sbjct: 59 RIHDLLVRADVGEDPPDDG-IAEPGMVLTVRYHDTGDTETFLLGARGAEHCDVEVYSPRS 117 Query: 125 PIARALIGKELGDIISVNAPGG 146 P+ A+IG G+ S PGG Sbjct: 118 PLGAAVIGAIPGEQRSFTLPGG 139 >gi|170767795|ref|ZP_02902248.1| regulator of nucleoside diphosphate kinase [Escherichia albertii TW07627] gi|170123283|gb|EDS92214.1| regulator of nucleoside diphosphate kinase [Escherichia albertii TW07627] Length = 136 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M + + Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHNVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + G+ + +V + + +S+ P+ AL+G +GD I PGG Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMDPVGAALLGLRVGDTIHWELPGG 114 Query: 147 EKT-YEILQVLW 157 T E+L++ + Sbjct: 115 TATHLEVLELEY 126 >gi|158426269|ref|YP_001527561.1| transcription elongation factor regulatory protein [Azorhizobium caulinodans ORS 571] gi|158333158|dbj|BAF90643.1| transcription elongation factor protein [Azorhizobium caulinodans ORS 571] Length = 159 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%) Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 + QA + + A++++ + + FG TV+L+ + ++ ++ Sbjct: 56 GDVQADRTAMARATRDLRYYSARRATAQLVEPPEAP-ETVQFGVTVTLL-REDDRRQTFR 113 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 IVG+ EAD G VS SP+A AL+GK +GD+ V G + EI ++ Sbjct: 114 IVGEDEADPAQGSVSYVSPLAAALMGKGVGDVALV---AG-REVEIEKI 158 >gi|91215744|ref|ZP_01252714.1| transcription elongation factor GreB [Psychroflexus torquis ATCC 700755] gi|91186210|gb|EAS72583.1| transcription elongation factor GreB [Psychroflexus torquis ATCC 700755] Length = 164 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 17/152 (11%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT +G + +++E +++ I+ +E R + +G++ Sbjct: 30 YVTPQGKEMLREEKSKLEKQRADLTIQDDTERR---------------RELTVIDGKLKL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + A+V++ + I FGA V +G ++++IVG EA+++ ++ +SP Sbjct: 75 LDERLNSAQVLNPEQQNKSEIRFGAHVKFK--MNGSIQDFKIVGVDEANIKEKKIAFTSP 132 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +A A+ K+ GD + EIL + + Sbjct: 133 LAMAMTSKKKGDNFEFKLSQDSRPIEILGINY 164 >gi|172063609|ref|YP_001811260.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6] gi|171996126|gb|ACB67044.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6] Length = 132 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122 >gi|171321848|ref|ZP_02910748.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5] gi|171092867|gb|EDT38120.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5] Length = 132 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 G +++ SP+ AL+G + G ++ V P G + ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGVEKLMKVAAIVF 122 >gi|30250064|ref|NP_842134.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] gi|30139171|emb|CAD86041.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718] Length = 137 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RAEV+D + + +TV ++S ++ +V ++ D +SI + Sbjct: 34 DLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ AL+G GD I P GG I++V + Sbjct: 94 PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 127 >gi|226329344|ref|ZP_03804862.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198] gi|225202530|gb|EEG84884.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198] Length = 136 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E + + + LNE + RA+++ + + + + Sbjct: 4 PTIIINELDAERLDSLLEQPAFADSPIAEALNE--------ELDRADIVTPADIPANIVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG- 146 + V ++ + +++ +V + +S+ +P+ AL+G + D IS P G Sbjct: 56 MNSKVRFMDLKNNEERTRTLVYPASLKDSATELSVMAPMGAALLGLAIDDEISWKLPNGL 115 Query: 147 EKTYEILQVLW 157 E ++L++L+ Sbjct: 116 ETKVKVLEILY 126 >gi|183597965|ref|ZP_02959458.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827] gi|188022738|gb|EDU60778.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827] Length = 136 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E A Y LN+ + RA+++ + D + Sbjct: 4 PTIIINDLDAERLDALLEQAAYAGTPVADALND--------ELDRADILSPQEIPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 +TV ++ S +++ +V + +S+ +PI AL+G + D IS P G Sbjct: 56 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115 Query: 148 KT-YEILQVLW 157 +T +L++++ Sbjct: 116 ETRVRVLEIIY 126 >gi|317494056|ref|ZP_07952472.1| prokaryotic transcription elongation factor [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917829|gb|EFV39172.1| prokaryotic transcription elongation factor [Enterobacteriaceae bacterium 9_2_54FAA] Length = 136 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E + + + LN N + RAE++ M D + Sbjct: 3 RPAIILNELDAARLDTLLEQPAFASLPVAEALN--------NELDRAEMLSPENMPADVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + V + +S ++ +V + +S+ +PI AL+G +GD I P G Sbjct: 55 TMNSRVKFRDLSSKEEHVRTLVYPASLKDSAAELSVMAPIGAALLGLRVGDAIQWELPNG 114 Query: 147 EKT-YEILQVLW 157 + T E+L++ + Sbjct: 115 QTTHIEVLELQY 126 >gi|114332047|ref|YP_748269.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91] gi|114309061|gb|ABI60304.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91] Length = 137 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RA+V+D + + +TV ++S ++ +V ++ D +SI + Sbjct: 34 DLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ AL+G GD I P GG I++V + Sbjct: 94 PVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTY 127 >gi|254250301|ref|ZP_04943621.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|124876802|gb|EAY66792.1| Transcription elongation factor [Burkholderia cenocepacia PC184] Length = 132 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA+++ + + + + + ++L+++ + ++ + IV A+++ Sbjct: 22 HNPRFQTMLDTLLERADIVQPNAIKANVVTMNSQITLLDEATQEQATWTIVYPDSANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGAEKLMKVASIVF 122 >gi|295690226|ref|YP_003593919.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756] gi|295432129|gb|ADG11301.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756] Length = 160 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 19/149 (12%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT++G I+ EL + A GD + A A R A Sbjct: 30 VTAEGLAHIEAELA---SARAAYAAAQSAGGAADGDRTAMA---RATRDLRYWSARRATA 83 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + +A E+ G + ++IVG+ EAD G VS +PI Sbjct: 84 QLMERD---------PAKTVAQFGDRVTFEREDGRVQTFRIVGEDEADPAKGSVSYIAPI 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ARAL+GK +G+ APGGE EI + Sbjct: 135 ARALLGKAVGETA--PAPGGEI--EITAI 159 >gi|302381565|ref|YP_003817388.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides ATCC 15264] gi|302192193|gb|ADK99764.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides ATCC 15264] Length = 158 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G I L + EA A +A ++L+ + R Sbjct: 30 VTPQGLAAIDDALAQARAAYGAAQASGSIEA------DRTAMARATRDLRYWSARR---- 79 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A+V++ + R+ FG +V++ E+ G + ++IVG+ EAD +G VS SP+ Sbjct: 80 ----ANAQVVETAAE--GRVRFGGSVTI-EREDGRTQTWRIVGEDEADPANGSVSHVSPL 132 Query: 127 ARALIGKELGDIISV 141 ARAL GK +GD V Sbjct: 133 ARALTGKGVGDEAVV 147 >gi|222111468|ref|YP_002553732.1| grea/greb family elongation factor [Acidovorax ebreus TPSY] gi|221730912|gb|ACM33732.1| GreA/GreB family elongation factor [Acidovorax ebreus TPSY] Length = 135 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 43/92 (46%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+V D M + + +TV +G +V +E D VS+ +P Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G +GD + +P G+ T + + + Sbjct: 94 VGIALLGLGVGDEFQMPSPTGQVTVRVDAIDF 125 >gi|107025987|ref|YP_623498.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU 1054] gi|116692828|ref|YP_838361.1| GreA/GreB family elongation factor [Burkholderia cenocepacia HI2424] gi|170737905|ref|YP_001779165.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3] gi|206563773|ref|YP_002234536.1| putative transcription elongation factor [Burkholderia cenocepacia J2315] gi|105895361|gb|ABF78525.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU 1054] gi|116650828|gb|ABK11468.1| GreA/GreB family elongation factor [Burkholderia cenocepacia HI2424] gi|169820093|gb|ACA94675.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3] gi|198039813|emb|CAR55787.1| putative transcription elongation factor [Burkholderia cenocepacia J2315] Length = 132 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ Sbjct: 22 HNPRFQTMLDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGAEKLMKVAAIVF 122 >gi|197105386|ref|YP_002130763.1| transcription elongation factor GreA/GreB, family [Phenylobacterium zucineum HLK1] gi|196478806|gb|ACG78334.1| transcription elongation factor GreA/GreB, family [Phenylobacterium zucineum HLK1] Length = 161 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 23/151 (15%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VTS+G I++ L Q RI EA L + Y AA+ Sbjct: 28 YVTSRGLKLIERALADLDQ----RIAGCEDEA-QMAWLRRDQRYWAARR----------- 71 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 A+V++ S D +AFG V+ K+ G + ++VG+ EA+ G +S +P Sbjct: 72 -----ANAQVVE-SPADPDEVAFGTRVTFR-KDGGAPETVELVGEDEAEPAQGRLSWVAP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +ARA+IG G+ + + EIL V Sbjct: 125 LARAMIGAMPGETVELETRTPAIRLEILAVE 155 >gi|117619344|ref|YP_857300.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560751|gb|ABK37699.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 131 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAE+ + + M D + +TV +SG++ +V ++ +S+ +P Sbjct: 29 LQEELDRAEMREPADMPPDVVTMNSTVRFKMPSSGNEFCLTLVYPKDVQGDESKISVLAP 88 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G ++GD I+ P G EIL+V++ Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121 >gi|115358874|ref|YP_776012.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD] gi|170700327|ref|ZP_02891339.1| GreA/GreB family elongation factor [Burkholderia ambifaria IOP40-10] gi|115284162|gb|ABI89678.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD] gi|170134761|gb|EDT03077.1| GreA/GreB family elongation factor [Burkholderia ambifaria IOP40-10] Length = 132 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQATWTIVYPDAANLEL 81 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 G +++ SP+ AL+G + G ++ V P G EK ++ +++ Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122 >gi|238782987|ref|ZP_04627015.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri ATCC 43970] gi|238716190|gb|EEQ08174.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri ATCC 43970] Length = 152 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + Q LNE + RAE++ Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V + N+ ++ +V + +S+ +P+ AL+G + Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNDQLSVMAPLGAALLGLHVN 120 Query: 137 DIISVNAPGGEK-TYEILQVLW 157 D IS PGG++ +L++L+ Sbjct: 121 DEISWKLPGGDEARIIVLELLY 142 >gi|209884060|ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] gi|209872256|gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] Length = 134 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 + R+ AR G L AE AA + +E E+E RAE+ D + Sbjct: 6 QTRLPAIAISARDAGRLRHLAE-VAAGQYPETSEFLAREIE----RAEIRAADQSMRDIV 60 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-G 145 A + V+ + G + +V ++ADV +G +S+ +PI ALIG ++G I P G Sbjct: 61 AMQSEVTFRDDIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAG 120 Query: 146 GEKTYEILQVL 156 G ++ +++V+ Sbjct: 121 GWRSLTVIKVV 131 >gi|237748358|ref|ZP_04578838.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13] gi|229379720|gb|EEO29811.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13] Length = 130 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103 +Y+ ++ LN+ R + EL++ + RA V++ + D I +T +++ S ++ Sbjct: 13 DYERLTQMLMLNKYRTLPGIDELQDELDRANVVEPEELPNDVITINSTARFLDETSNEQF 72 Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 +V +AD + +S+ +P+ AL+G +G I PG +K ++L V Sbjct: 73 EITLVYPDKADGAT-KISVLAPVGSALLGMSVGQSIPWQVPGRQKLLLKVLDVK 125 >gi|110835187|ref|YP_694046.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis SK2] gi|110648298|emb|CAL17774.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis SK2] Length = 133 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA V++ M D + + + E+ G + +V D VSI +P Sbjct: 31 LEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPH--DTGPQRVSILAP 88 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G +G I AP G+ EIL V + Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKVLKLEILAVEY 121 >gi|145298530|ref|YP_001141371.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851302|gb|ABO89623.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida subsp. salmonicida A449] Length = 131 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAE+ + + M D + +TV +NS ++ +V ++ +S+ +P Sbjct: 29 LQEELDRAEMREPADMPPDVVTMNSTVRFKMQNSENEFCLTLVYPKDVQGDESRISVLAP 88 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + AL+G ++GD I+ P G EIL+V++ Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIQVEILEVVY 121 >gi|262395367|ref|YP_003287220.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25] gi|262338961|gb|ACY52755.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25] Length = 135 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFAGEDRTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125 >gi|299132174|ref|ZP_07025369.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] gi|298592311|gb|EFI52511.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2] Length = 134 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Query: 23 QQEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 Q P I ++ +A L+E A Y E I RAE+ Sbjct: 5 LQTRLPAIAISVRDADRLRHLAEVAADRYPETAEFLAQ----------EIERAEIRSADQ 54 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 D +A + V+ + G + +V ++ADV +G +S+ +PI ALIG +G I Sbjct: 55 SMRDIVAMQSEVTFRDDIGGQSRTVTLVYPEDADVGAGKISVLTPIGAALIGMSVGKSIE 114 Query: 141 VNAP-GGEKTYEILQVLW 157 P GG ++ + +VL Sbjct: 115 FQTPAGGWRSLTVTKVLH 132 >gi|91224637|ref|ZP_01259898.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 12G01] gi|91190525|gb|EAS76793.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 12G01] Length = 135 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125 >gi|161520489|ref|YP_001583916.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC 17616] gi|189353320|ref|YP_001948947.1| regulator of nucleoside diphosphate kinase [Burkholderia multivorans ATCC 17616] gi|221209737|ref|ZP_03582718.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1] gi|160344539|gb|ABX17624.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC 17616] gi|189337342|dbj|BAG46411.1| regulator of nucleoside diphosphate kinase [Burkholderia multivorans ATCC 17616] gi|221170425|gb|EEE02891.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1] Length = 132 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107 + ++ N A L+ ++ RA+++ + + + + ++L+++ + + + I Sbjct: 12 DVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTI 71 Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157 V A+++ G +++ SP+ AL+G + G + V P G + ++ ++++ Sbjct: 72 VYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122 >gi|329847111|ref|ZP_08262139.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Asticcacaulis biprosthecum C19] gi|328842174|gb|EGF91743.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Asticcacaulis biprosthecum C19] Length = 159 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT +G ++Q +A + A E ++ + A + Sbjct: 30 VTPQGLAQLQA-----------AFAEAKAAYTAAQSSGEVSDDRTAMARAT---RDLRYY 75 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + A+ ++ T+ + FG TV++ E+ G + ++IVG+ EAD + G +S SP+ Sbjct: 76 TARLGSAQPVEPVTVP-QAVVFGCTVTI-ERADGRTQTFRIVGEDEADPKQGSISYVSPL 133 Query: 127 ARALIGKELGDIISVN 142 A+AL+GK L D + ++ Sbjct: 134 AQALMGKTLDDEVRLD 149 >gi|146280909|ref|YP_001171062.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri A1501] gi|145569114|gb|ABP78220.1| regulator of nucleoside diphosphate kinase [Pseudomonas stutzeri A1501] gi|327479178|gb|AEA82488.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri DSM 4166] Length = 134 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++RA+V++ S M + + V ++ SG + +V +A + G VS+ +P Sbjct: 34 LEQELSRAQVVERSEMPAGVVTMNSRVHCRDEGSGKDYHLTLVYPHDA-GKEGTVSVLAP 92 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + AL+G +G I APGG+ +L + + Sbjct: 93 VGTALLGMSVGQHIDWPAPGGKMIKLTLLAIEY 125 >gi|254419345|ref|ZP_05033069.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Brevundimonas sp. BAL3] gi|196185522|gb|EDX80498.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Brevundimonas sp. BAL3] Length = 163 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 T + FG +VS+ E+ G + ++IVG+ EAD G VS SP+ARAL+GK +GD Sbjct: 90 EPTADDGGVRFGGSVSI-EREDGRTQTWRIVGEDEADPAKGSVSHVSPLARALLGKRIGD 148 Query: 138 IISVNAPGGEKTYEILQV 155 V G ++ EI V Sbjct: 149 EAVV---AG-QSVEITAV 162 >gi|264679555|ref|YP_003279462.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] gi|299530414|ref|ZP_07043837.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] gi|262210068|gb|ACY34166.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] gi|298721639|gb|EFI62573.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] Length = 135 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+V+D + + + + +TV +V ++ D + VSI +P Sbjct: 34 LEAELDRADVLDPAEIPANVVTMNSTVRFTILEIAKTNTLTLVYPKDMDGSADKVSIFAP 93 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + AL+G +GD + +P G+ T + + + Sbjct: 94 VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125 >gi|183985318|ref|YP_001853609.1| hypothetical protein MMAR_5350 [Mycobacterium marinum M] gi|183178644|gb|ACC43754.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 161 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +++ + D + EL +Q I+ ++ GD + AE + Sbjct: 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 + R+ EL+ + S +G T + + G+ IV + Sbjct: 61 VLTERIHELDRRLKAG----PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++ SP+ +AL G++ GD ++ + P G E+L + Sbjct: 117 HEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158 >gi|304310570|ref|YP_003810168.1| transcription elongation factor GreA/GreB [gamma proteobacterium HdN1] gi|301796303|emb|CBL44511.1| transcription elongation factor GreA/GreB [gamma proteobacterium HdN1] Length = 137 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 +RP I + +A DL A+ + ELE + RA V++ + Sbjct: 3 KRPEITISTLDAERLEDLL------ASLPKATFVGHK--ELEAELDRANVVEPHEVPPTV 54 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144 + + V ++S D+ +V ++ D +SI SP+ AL+G GD I P Sbjct: 55 VTMNSKVKFNVESSSDEFELTLVYPKDMDASGKTISILSPVGSALLGLSQGDEIEWPKPG 114 Query: 145 GGEKTYEILQVL 156 GG ++ +V+ Sbjct: 115 GGLLKVKVKEVV 126 >gi|113869543|ref|YP_728032.1| transcription elongation factor GreA [Ralstonia eutropha H16] gi|113528319|emb|CAJ94664.1| transcription elongation factor GreA [Ralstonia eutropha H16] Length = 139 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 L++++ RA ++ + D + + +N+ +V AD +G +S+ S Sbjct: 36 MLDSLLARATIVAPEEIPTDVVTMNTRLVCNLPGEQAPRNWTLVYPDAADFDAGRLSVLS 95 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 P+ +AL+G G +S P G E+ + + + Sbjct: 96 PVGQALLGARAGQTVSYRLPDGREQQVSVAGIAF 129 >gi|86132956|ref|ZP_01051546.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] gi|85816474|gb|EAQ37662.1| transcription elongation factor GreA/GreB family protein [Dokdonia donghaensis MED134] Length = 167 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VTS G ++++EL + L E E + + + G+ Sbjct: 30 YVTSHGLTQLKEELSTLDNK--------------ISTLDETDERER-RRALAVLNGKRNL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L I A ++D I FGATV+ QIVG EA V+ ++ ++P Sbjct: 75 LLERIQSARLLDHIK-DEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IARALIGK++ + + EK I + ++ Sbjct: 134 IARALIGKKVDETTTFQLGNEEKKLTIKNIAYV 166 >gi|290476785|ref|YP_003469696.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii SS-2004] gi|289176129|emb|CBJ82934.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii SS-2004] Length = 136 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 ++P+II +A L E + + LN + + RAE++ + D Sbjct: 1 MKKPKIIINELDAERLDLLLEQPAFANTHIAEALN--------SELDRAEIVPPVEIPPD 52 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + + + ++ S +++ +V + +S+ +P+ AL+G + D I+ P Sbjct: 53 VVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKHLSVMAPLGAALLGLRVNDEITWQLP 112 Query: 145 GGEKT-YEILQVLW 157 EKT ++L++++ Sbjct: 113 NSEKTRIKVLEIIY 126 >gi|240170744|ref|ZP_04749403.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC 12478] Length = 159 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 16/147 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--AEYQAAKELQNLN 59 ++I +T + ++ EL + + A+ + D N A Y A K Sbjct: 4 TERIRMTQQDHSRLLSELIALRSQ------HAVEAPDDFLDYHANVIARYCARK------ 51 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R+ E+E +++ A ++ + T G V++ + +G + + + + + Sbjct: 52 -ARIREIEQLLSSA-IVGVDTGGDVIAQPGMVVTISYEATGQTETFLLGRRGAQNADIPV 109 Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146 S SP+ RA+ G LG+ + P G Sbjct: 110 YSTLSPLGRAITGARLGEQRVYSIPQG 136 >gi|121998926|ref|YP_001003713.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1] gi|121590331|gb|ABM62911.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1] Length = 137 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LEN + RAE+++ + + + +TV + + ++ + +V ++ D G +SI + Sbjct: 34 DLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFA 93 Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 P+ AL+G G+ I P GG I ++L+ Sbjct: 94 PVGSALLGLSQGEEIEWPRPGGGAHRVRIEEILY 127 >gi|325982230|ref|YP_004294632.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212] gi|325531749|gb|ADZ26470.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212] Length = 136 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + I RA V++ + + D I +T+ V+ +G + +V EA G +SI++P+ Sbjct: 37 DEIDRASVVEPTEVPSDVITMNSTIRFVDDMNGSEHQLTLVYPDEAGAH-GTISIAAPVG 95 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156 AL+G +G I PGG E +L+V+ Sbjct: 96 SALLGLSVGQSIRWQVPGGRELNLRVLEVI 125 >gi|238793739|ref|ZP_04637361.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia ATCC 29909] gi|238726980|gb|EEQ18512.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia ATCC 29909] Length = 152 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + Q LNE + RAE++ Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V + NS ++ +V + +S+ +P+ AL+G + Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGMHIN 120 Query: 137 DIISVNAPGGEKT-YEILQVLW 157 D IS PGG++T ++++L+ Sbjct: 121 DEISWKLPGGDETRITVVELLY 142 >gi|269968902|ref|ZP_06182875.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B] gi|269826489|gb|EEZ80850.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B] Length = 135 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNNQVKTIEIVDITY 125 >gi|118619988|ref|YP_908320.1| nucleoside diphosphate kinase regulator [Mycobacterium ulcerans Agy99] gi|118572098|gb|ABL06849.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 161 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +++ + D + EL +Q I+ ++ GD + AE + Sbjct: 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELP 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 + R+ EL+ + S +G T + + G+ IV + Sbjct: 61 VLTERIHELDRRLKAG----PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++ SP+ +AL G++ GD ++ + P G E+L + Sbjct: 117 HEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158 >gi|190572883|ref|YP_001970728.1| putative regulator of nucleoside diphosphate kinase [Stenotrophomonas maltophilia K279a] gi|190010805|emb|CAQ44414.1| putative regulator of nucleoside diphosphate kinase [Stenotrophomonas maltophilia K279a] Length = 134 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+ Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100 Query: 128 RALIGKELGDIISVNAPGGEK 148 AL+G +G I NAPGG K Sbjct: 101 SALLGLSIGQSIDWNAPGGRK 121 >gi|192292723|ref|YP_001993328.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris TIE-1] gi|192286472|gb|ACF02853.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] Length = 160 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + A+V+ S D IAFG+TV+ + G + Y+IVG+ EAD +G + Sbjct: 71 RDARYYAARVRSAQVM-PDPPSTDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPNAGTI 128 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S +P+AR L+GK +GD++ G + E++ V Sbjct: 129 SFVAPVARLLMGKSVGDVV----GKGAQELEVVGVK 160 >gi|194364464|ref|YP_002027074.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia R551-3] gi|194347268|gb|ACF50391.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia R551-3] Length = 134 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+ Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100 Query: 128 RALIGKELGDIISVNAPGGEK 148 AL+G +G I NAPGG K Sbjct: 101 SALLGLSIGQSIDWNAPGGRK 121 >gi|197287446|ref|YP_002153318.1| nucleoside diphosphate kinase regulator [Proteus mirabilis HI4320] gi|227358292|ref|ZP_03842633.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC 29906] gi|194684933|emb|CAR47113.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis HI4320] gi|227161628|gb|EEI46665.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC 29906] Length = 136 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P II +A L E + + + LNE + RA+++ + + + + Sbjct: 4 PTIIINELDAERLDSLLEQPAFADSPIAEALNE--------ELDRADIVTPADIPANIVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG- 146 + V ++ + +++ +V + +S+ +P+ AL+G + D IS P G Sbjct: 56 MNSKVRFMDLKNNEERIRTLVYPASLKDSATELSVMAPMGAALLGLAINDEISWQLPNGL 115 Query: 147 EKTYEILQVLW 157 E ++L++L+ Sbjct: 116 ETKVKVLEILY 126 >gi|294995299|ref|ZP_06800990.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 210] gi|326905627|gb|EGE52560.1| hypothetical protein TBPG_03585 [Mycobacterium tuberculosis W-148] Length = 161 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +K+ + D + EL +Q ++ ++ GD + AE + Sbjct: 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 L R+ EL+ + + SG G T + G+ +V + Sbjct: 61 LLGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ ++ SP+ +AL G + GD ++ + P G ++L V Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158 >gi|27367044|ref|NP_762571.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus CMCP6] gi|320158922|ref|YP_004191300.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus MO6-24/O] gi|27358612|gb|AAO07561.1| Regulator of nucleoside diphosphate kinase [Vibrio vulnificus CMCP6] gi|319934234|gb|ADV89097.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus MO6-24/O] Length = 135 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A E + +LEN + RA V+ M + + +TV S +V Sbjct: 19 ALLEKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + VSI +P+ AL+G +G ++ PGG EKT EIL+V + Sbjct: 79 DQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAEKTIEILEVTY 125 >gi|241764171|ref|ZP_04762206.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] gi|241366508|gb|EER61008.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN] Length = 303 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ I RA V+D ++ D + + L + +V +EAD ++G +S+ Sbjct: 201 IFELEHEIERAIVVDPRQVAEDVVTMNSKALLQ--VDDAELEVALVYPEEADDRAGKLSV 258 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S I A++G + GD S P I +VL+ Sbjct: 259 CSDIGTAILGYKEGDAFSWRIPNRTCHIRIAKVLY 293 >gi|253997382|ref|YP_003049446.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] gi|253984061|gb|ACT48919.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8] Length = 125 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + ++RA V+ + D + + V ++++SG + ++V + AD++ G +S+ SP+ Sbjct: 28 DELSRAIVVPADQVPADVVRINSRVIYLDESSGLSREVELVFPEGADLKFGKISVLSPVG 87 Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G + G +I P G+ + +++ V Sbjct: 88 SALLGLKEGQVIDWPFPHGQSRRLKVVSV 116 >gi|115377129|ref|ZP_01464343.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca DW4/3-1] gi|115365838|gb|EAU64859.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca DW4/3-1] Length = 149 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RA V+ + D + + V + ++G ++ +V +EA++ VSI + Sbjct: 46 QLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEEANIDQSRVSILA 105 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 P+ A++G ++GDII P IL+VL+ Sbjct: 106 PVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 139 >gi|166011342|ref|ZP_02232240.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. E1979001] gi|167420627|ref|ZP_02312380.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|165989726|gb|EDR42027.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. E1979001] gi|166961433|gb|EDR57454.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 150 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + + LNE + RAE++ Sbjct: 7 AEIELESAMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 58 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V ++ NS ++ +V + +S+ +P+ AL+G + Sbjct: 59 PPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 118 Query: 137 DIISVNAPGGEKT-YEILQVLW 157 D IS PGG++T +L++L+ Sbjct: 119 DEISWKLPGGDETRITVLELLY 140 >gi|56476179|ref|YP_157768.1| transcription elongation factor [Aromatoleum aromaticum EbN1] gi|56312222|emb|CAI06867.1| Transcription elongation factor [Aromatoleum aromaticum EbN1] Length = 158 Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L + RA V+ + + + V +++ SG+++ Q+V +EADV +G VS+ + Sbjct: 57 QLRAELERAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVFA 116 Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 P+ AL+G + +I + P G + + +VL Sbjct: 117 PVGAALLGLSVDQVIEWDFPRGPRRRLRVEEVLH 150 >gi|119387447|ref|YP_918481.1| nucleoside diphosphate kinase regulator [Paracoccus denitrificans PD1222] gi|119378022|gb|ABL72785.1| GreA/GreB family elongation factor [Paracoccus denitrificans PD1222] Length = 137 Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP + A L+E AA R+ + RA V+ + M D Sbjct: 6 RPPVTIASDTLDRLERLAE-----AAMARNPELADRLL---AELARARVLPPARMPADVA 57 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 G+ V+ ++ +G ++ +V ++AD+ + S+ +PI ALIG G + + G Sbjct: 58 GIGSAVTFRDETTGREQTVVLVWPEDADIAAARASVLTPIGVALIGLRAGARFTWDTRAG 117 Query: 147 E-KTYEILQV 155 E + +L V Sbjct: 118 ETRELTVLSV 127 >gi|254521305|ref|ZP_05133360.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp. SKA14] gi|219718896|gb|EED37421.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp. SKA14] Length = 134 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+ Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100 Query: 128 RALIGKELGDIISVNAPGGEK 148 AL+G +G I NAPGG K Sbjct: 101 SALLGLAIGQSIDWNAPGGRK 121 >gi|56459738|ref|YP_155019.1| transcription elongation factor family protein [Idiomarina loihiensis L2TR] gi|56178748|gb|AAV81470.1| Transcription elongation factor family protein [Idiomarina loihiensis L2TR] Length = 129 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 5/111 (4%) Query: 50 QAAKELQNLNEGRM-----AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 A +L+E R+ ELE + RA++++ + M + V+ +G Sbjct: 17 DMAVIEHHLDETRLPREFLDELEVELARAKIVEPNVMPANVACLNRQVTFKVLETGKVFT 76 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + + D +S+ +P+ ALIG +G I G ++ EI+ V Sbjct: 77 KTLTAPDQVDKYDDSLSVFAPLGAALIGLSVGQSIQWKTNRGLQSVEIVHV 127 >gi|240140105|ref|YP_002964582.1| putative transcription elongation factor (GreA/GreB domain protein) [Methylobacterium extorquens AM1] gi|240010079|gb|ACS41305.1| Putative transcription elongation factor (GreA/GreB domain protein) [Methylobacterium extorquens AM1] Length = 107 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKISIL 68 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +PI ALIG G I GE + +L+V Sbjct: 69 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 102 >gi|37676834|ref|NP_937230.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus YJ016] gi|37201378|dbj|BAC97200.1| transcription elongation factor [Vibrio vulnificus YJ016] Length = 135 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A E + +LEN + RA V+ M + + +TV S +V Sbjct: 19 ALLEKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + VSI +P+ AL+G +G ++ PGG E+T EIL+V + Sbjct: 79 DQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEVTY 125 >gi|39936890|ref|NP_949166.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris CGA009] gi|39650747|emb|CAE29270.1| putative transcription elongation factor greA homologue [Rhodopseudomonas palustris CGA009] Length = 176 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 24/151 (15%) Query: 7 VTSKGFDKIQQELRWRQQEERPRI-IKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64 VT+ G ++ L + I+ ++E R A +A Y AA+ Sbjct: 47 VTAAGLAALEGLLAEAKAALEAAGAIEDVNERRRAEAIPLRDARYYAARVRSAQVM---- 102 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 S D IAFG+TV+ + G + Y+IVG+ EAD +G +S + Sbjct: 103 -------------PDPPSIDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPNAGTISFVA 148 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155 P+AR L+GK +GD++ G + E++ + Sbjct: 149 PVARLLMGKSVGDVV----GKGAQELEVVGI 175 >gi|15610924|ref|NP_218305.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis H37Rv] gi|15843410|ref|NP_338447.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis CDC1551] gi|31794961|ref|NP_857454.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis AF2122/97] gi|121639705|ref|YP_979929.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663656|ref|YP_001285179.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis H37Ra] gi|148824995|ref|YP_001289749.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis F11] gi|167970951|ref|ZP_02553228.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis H37Ra] gi|215405842|ref|ZP_03418023.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 02_1987] gi|215425039|ref|ZP_03422958.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis T92] gi|215432769|ref|ZP_03430688.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis EAS054] gi|218755573|ref|ZP_03534369.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis GM 1503] gi|219559875|ref|ZP_03538951.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis T17] gi|224992200|ref|YP_002646890.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253800836|ref|YP_003033838.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN 1435] gi|254233281|ref|ZP_04926607.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C] gi|254366335|ref|ZP_04982379.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str. Haarlem] gi|254552903|ref|ZP_05143350.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184713|ref|ZP_05762187.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis CPHL_A] gi|260198837|ref|ZP_05766328.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis T46] gi|260202993|ref|ZP_05770484.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis K85] gi|289441225|ref|ZP_06430969.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46] gi|289445389|ref|ZP_06435133.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis CPHL_A] gi|289556055|ref|ZP_06445265.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN 605] gi|289572037|ref|ZP_06452264.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17] gi|289572440|ref|ZP_06452667.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85] gi|289747630|ref|ZP_06507008.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 02_1987] gi|289748311|ref|ZP_06507689.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92] gi|289755921|ref|ZP_06515299.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis EAS054] gi|289763972|ref|ZP_06523350.1| transcription elongation factor [Mycobacterium tuberculosis GM 1503] gi|297636470|ref|ZP_06954250.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis KZN 4207] gi|297733464|ref|ZP_06962582.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis KZN R506] gi|306778150|ref|ZP_07416487.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis SUMu001] gi|306778682|ref|ZP_07417019.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis SUMu002] gi|306786704|ref|ZP_07425026.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis SUMu003] gi|306791071|ref|ZP_07429393.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis SUMu004] gi|306791390|ref|ZP_07429692.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis SUMu005] gi|306795455|ref|ZP_07433757.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis SUMu006] gi|306801430|ref|ZP_07438098.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis SUMu008] gi|306805636|ref|ZP_07442304.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis SUMu007] gi|306970032|ref|ZP_07482693.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis SUMu009] gi|306974266|ref|ZP_07486927.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis SUMu010] gi|307081974|ref|ZP_07491144.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis SUMu011] gi|307086588|ref|ZP_07495701.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis SUMu012] gi|313660795|ref|ZP_07817675.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis KZN V2475] gi|54039913|sp|P65096|Y3817_MYCBO RecName: Full=Uncharacterized protein Mb3817 gi|54042581|sp|P65095|Y3788_MYCTU RecName: Full=Uncharacterized protein Rv3788/MT3896 gi|1552871|emb|CAB02467.1| HYPOTHETICAL PROTEIN Rv3788 [Mycobacterium tuberculosis H37Rv] gi|13883777|gb|AAK48261.1| transcription elongation factor, putative [Mycobacterium tuberculosis CDC1551] gi|31620559|emb|CAD96003.1| HYPOTHETICAL PROTEIN Mb3817 [Mycobacterium bovis AF2122/97] gi|121495353|emb|CAL73840.1| Hypothetical protein BCG_3850 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603074|gb|EAY61349.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C] gi|134151847|gb|EBA43892.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str. Haarlem] gi|148507808|gb|ABQ75617.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis H37Ra] gi|148723522|gb|ABR08147.1| hypothetical protein TBFG_13822 [Mycobacterium tuberculosis F11] gi|224775316|dbj|BAH28122.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253322340|gb|ACT26943.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN 1435] gi|289414144|gb|EFD11384.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46] gi|289418347|gb|EFD15548.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis CPHL_A] gi|289440687|gb|EFD23180.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN 605] gi|289536871|gb|EFD41449.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85] gi|289545791|gb|EFD49439.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17] gi|289688158|gb|EFD55646.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 02_1987] gi|289688898|gb|EFD56327.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92] gi|289696508|gb|EFD63937.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis EAS054] gi|289711478|gb|EFD75494.1| transcription elongation factor [Mycobacterium tuberculosis GM 1503] gi|308213671|gb|EFO73070.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis SUMu001] gi|308328404|gb|EFP17255.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis SUMu002] gi|308328808|gb|EFP17659.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis SUMu003] gi|308332651|gb|EFP21502.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis SUMu004] gi|308340143|gb|EFP28994.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis SUMu005] gi|308344129|gb|EFP32980.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis SUMu006] gi|308347931|gb|EFP36782.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis SUMu007] gi|308351799|gb|EFP40650.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis SUMu008] gi|308352582|gb|EFP41433.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis SUMu009] gi|308356534|gb|EFP45385.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis SUMu010] gi|308360482|gb|EFP49333.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis SUMu011] gi|308364000|gb|EFP52851.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis SUMu012] gi|323717654|gb|EGB26856.1| hypothetical protein TMMG_00281 [Mycobacterium tuberculosis CDC1551A] gi|328460564|gb|AEB05987.1| hypothetical protein TBSG_03858 [Mycobacterium tuberculosis KZN 4207] Length = 161 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +K+ + D + EL +Q ++ ++ GD + AE + Sbjct: 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 + R+ EL+ + + SG G T + G+ +V + Sbjct: 61 ILGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ ++ SP+ +AL G + GD ++ + P G ++L V Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158 >gi|254000392|ref|YP_003052455.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|313202349|ref|YP_004041007.1| grea/greb family elongation factor [Methylovorus sp. MP688] gi|253987071|gb|ACT51928.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4] gi|312441665|gb|ADQ85771.1| GreA/GreB family elongation factor [Methylovorus sp. MP688] Length = 118 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 44/79 (55%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ M D + + V+ V++++G + ++V +EA+++ G +S+ +P+ Sbjct: 27 DELDRAIVVPSEKMPPDIVGLNSRVTYVDESNGVSRTIELVLPEEANMEQGKISVLAPVG 86 Query: 128 RALIGKELGDIISVNAPGG 146 AL+G + G I P G Sbjct: 87 TALLGLKAGQSIEWPFPNG 105 >gi|148550773|ref|YP_001260212.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148503192|gb|ABQ71445.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 137 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + RP I SEA DL+ +A + + Q L E + RA + + Sbjct: 5 KAARRPPIHMIDSEADILADLATSAATRLPQVSQLLLE--------ELGRATIHKADRIP 56 Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142 GD + + V + SG + YQ+V ++AD+ G +SI +P+ LIG G I Sbjct: 57 GDIVTMHSVVQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWP 116 Query: 143 APGG-EKTYEILQVL 156 G E+ I +V Sbjct: 117 DRDGHERLLTIAKVS 131 >gi|254562534|ref|YP_003069629.1| elongation factor, GreA/GreB family [Methylobacterium extorquens DM4] gi|254269812|emb|CAX25787.1| Putative elongation factor, GreA/GreB family [Methylobacterium extorquens DM4] Length = 107 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 A L + + R +++ D G+ V + ++G ++ +V EAD++ G VSI Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKVSIL 68 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +PI ALIG G I+ GE + +L+V Sbjct: 69 TPIGAALIGLSEGQSINWATRTGETRRLTVLEVR 102 >gi|238789786|ref|ZP_04633568.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii ATCC 33641] gi|238722145|gb|EEQ13803.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii ATCC 33641] Length = 152 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + + LNE + RAE++ Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 60 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + + D + + V + NS ++ +V + +S+ +P+ AL+G + Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 120 Query: 137 DIISVNAPGGEK-TYEILQVLW 157 D IS PGG++ +L++L+ Sbjct: 121 DEISWKLPGGDEARITVLELLY 142 >gi|331089361|ref|ZP_08338261.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405424|gb|EGG84959.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium 3_1_46FAA] Length = 101 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%) Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134 VI D I TV + ++ + + Y+IV +GLVSI SP+ +AL+G + Sbjct: 6 VIVEDESKEDEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESPLGKALLGHK 65 Query: 135 LGDIISVNAPGGEKTYEILQ 154 GD + + Y I++ Sbjct: 66 EGDRVFIKVNDDFGYYVIVK 85 >gi|94499055|ref|ZP_01305593.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter sp. RED65] gi|94428687|gb|EAT13659.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter sp. RED65] Length = 135 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +ELE+ + RA +++ + + + ++ + V ++ + +V ++ D + +SI Sbjct: 31 SELEDELDRANLVEPTEIPPNIVSMNSKVKFEVVSTNQEFELTLVYPKDLDQEGKTISIL 90 Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G +GD I ++P GG I +++ Sbjct: 91 APVGSALLGLSIGDSIEWSSPGGGILEVIIKDIVY 125 >gi|310822870|ref|YP_003955228.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1] gi|309395942|gb|ADO73401.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1] Length = 144 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + RA V+ + D + + V + ++G ++ +V +EA++ VSI + Sbjct: 41 QLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEEANIDQSRVSILA 100 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 P+ A++G ++GDII P IL+VL+ Sbjct: 101 PVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 134 >gi|163852771|ref|YP_001640814.1| transcription elongation factor GreA/GreB domain-containing protein [Methylobacterium extorquens PA1] gi|163664376|gb|ABY31743.1| transcription elongation factor GreA/GreB domain protein [Methylobacterium extorquens PA1] Length = 123 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 + L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI Sbjct: 25 SFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGRISIL 84 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +PI ALIG G I GE + +L+V Sbjct: 85 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 118 >gi|49076904|gb|AAT49613.1| PA5274 [synthetic construct] Length = 135 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + AL+G +G I AP G+ +L++ + Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124 >gi|296166914|ref|ZP_06849331.1| nucleoside diphosphate kinase regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897791|gb|EFG77380.1| nucleoside diphosphate kinase regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 159 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 7/142 (4%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77 EL +Q ++ ++ GD + AE E R+ EL+ + Sbjct: 19 ELERLRQRRDRLEVEVRNDRGMVGDHGDAAEAIQRAEELVGLSDRINELDRRLRTG---- 74 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARALIGKE 134 S G T + + G+ IV + + ++ SP+A+AL G + Sbjct: 75 PSQPDASETLPGGTEVTLRFSDGEVVTMHVISIVEETPVGREGETLTARSPLAQALAGHK 134 Query: 135 LGDIISVNAPGGEKTYEILQVL 156 GD ++ + P GE E++ V Sbjct: 135 AGDTVTYSTPQGEDQVELIAVK 156 >gi|260430269|ref|ZP_05784243.1| GreA/GreB family elongation factor [Citreicella sp. SE45] gi|260418741|gb|EEX11997.1| GreA/GreB family elongation factor [Citreicella sp. SE45] Length = 147 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RPR++ A + G L AE A E R+ I RA ++ + + + Sbjct: 13 RRPRVVI---SADSLGRLEALAE--GAIERNPDLADRLL---GEIGRARIVPAAKLPQNV 64 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 +A G V+ ++++G +K V ++AD+ G +SI +PI ALIG G + + Sbjct: 65 VAIGRAVTYRDESNGQEKTVTPVFPEDADIARGRISILTPIGVALIGLAEGASLHWDTRD 124 Query: 146 GEKTY-EILQV 155 GE+ +L V Sbjct: 125 GERRVLTVLHV 135 >gi|325104691|ref|YP_004274345.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] gi|324973539|gb|ADY52523.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145] Length = 135 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 45/87 (51%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + +AEV+ T+ ++ + + E+ SG + + +V ++A + +SI SPI A Sbjct: 45 LEKAEVLTEKTLPEGFVSVNTKLKIEEEQSGKELEFILVEPKKAKQKLNKLSILSPIGVA 104 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L G + GD +S P G + Y I +V Sbjct: 105 LAGYKSGDKVSWEMPDGIRNYFIKEVT 131 >gi|300703154|ref|YP_003744756.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CFBP2957] gi|299070817|emb|CBJ42114.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CFBP2957] Length = 134 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V + SG + + +V EAD+ + +S+ SP Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVRVR-TESGVAQQWTLVYPDEADLAAARLSVCSP 91 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G GD + AP G +I +++ Sbjct: 92 MGAALLGGRAGDAVHYVAPDGTTHALQIDAIVF 124 >gi|152985312|ref|YP_001351332.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PA7] gi|150960470|gb|ABR82495.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PA7] Length = 134 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + AL+G +G I AP G+ +L++ + Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124 >gi|15600467|ref|NP_253961.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1] gi|107104376|ref|ZP_01368294.1| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2] gi|116053423|ref|YP_793748.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894376|ref|YP_002443246.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa LESB58] gi|254238029|ref|ZP_04931352.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa C3719] gi|254243839|ref|ZP_04937161.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 2192] gi|296392131|ref|ZP_06881606.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAb1] gi|313106689|ref|ZP_07792907.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 39016] gi|9951587|gb|AAG08659.1|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1] gi|115588644|gb|ABJ14659.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169960|gb|EAZ55471.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa C3719] gi|126197217|gb|EAZ61280.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 2192] gi|218774605|emb|CAW30422.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa LESB58] gi|310879409|gb|EFQ38003.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa 39016] Length = 134 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + AL+G +G I AP G+ +L++ + Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124 >gi|50119243|ref|YP_048410.1| nucleoside diphosphate kinase regulator [Pectobacterium atrosepticum SCRI1043] gi|49609769|emb|CAG73203.1| putative regulator of nucleoside diphosphate kinase [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q LN+ + RAE++ +++ + Sbjct: 4 PNLTISELDAERLDKLLEQPAFADSDIAQALND--------ELDRAEILPSASIPSHVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + N+ ++ +V +S+ +P+ AL+G +G I+ P GE Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGSAITWQLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E+L++L+ Sbjct: 116 ETRIEVLELLY 126 >gi|239983774|ref|ZP_04706298.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074] gi|291455579|ref|ZP_06594969.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074] gi|291358528|gb|EFE85430.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074] Length = 160 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D +P+++ ++QEL + E GD + A+ + Sbjct: 3 SDPLPISAAARHALEQELADVRAERETVAATLQDPDIVAGDRGDAADQLQRSGDLARLDA 62 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 R+ ++ + +A D + + + V + G ++ I G+ + LV+ Sbjct: 63 RIEDITTRLRQA---DDAGPPPAGVVGVGSTVTVRFDDGAEQTVSI-GEVTQGYDASLVT 118 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 SP+ +AL+G GD + P GE Sbjct: 119 ADSPLGKALMGCRPGDAVRYRTPDGE 144 >gi|238754630|ref|ZP_04615983.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC 29473] gi|238707089|gb|EEP99453.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC 29473] Length = 136 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA+++ S + D + + V + NS ++ +V S +S+ +P+ Sbjct: 36 EELDRADILPPSEIPADVVTMNSRVRFRDLNSEEEHIRTLVYPASLKDSSEQISVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157 AL+G + D I+ PGG++ +L++L+ Sbjct: 96 AALLGLHVNDEINWTLPGGDEARITVLELLY 126 >gi|215413716|ref|ZP_03422384.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 94_M4241A] gi|298527263|ref|ZP_07014672.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 94_M4241A] gi|298497057|gb|EFI32351.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis 94_M4241A] Length = 161 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +K+ + D + EL +Q ++ ++ GD + AE + Sbjct: 1 MSEKVESKELADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 + R+ EL+ + + SG G T + G+ +V + Sbjct: 61 ILGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ ++ SP+ +AL G + GD ++ + P G ++L V Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158 >gi|293394200|ref|ZP_06638500.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia odorifera DSM 4582] gi|291423178|gb|EFE96407.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia odorifera DSM 4582] Length = 221 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P I +A L E Y LN + RAE++ + + + Sbjct: 89 PIITINELDAERLDALLEKPAYANTDVAAALNA--------ELDRAEILPPAQIPAHVVT 140 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + ++ ++ +V E S +S+ +P+ AL+G +G I P GE Sbjct: 141 MNSRVRFRDLHTNEEHVRTLVYPAELQNSSEQLSVMAPLGAALLGMHVGKQIDWALPNGE 200 Query: 148 K-TYEILQVLW 157 + E+L++L+ Sbjct: 201 QAQIEVLELLY 211 >gi|120612663|ref|YP_972341.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] gi|120591127|gb|ABM34567.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] Length = 136 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 42/80 (52%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 +++ A+V T+ D + + V LV+ +G ++ I ++AD+ +G VS+ SP+ Sbjct: 36 DLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRDADLAAGFVSVLSPVG 95 Query: 128 RALIGKELGDIISVNAPGGE 147 +L+G +G P GE Sbjct: 96 SSLLGLRVGQTARWCTPRGE 115 >gi|109896618|ref|YP_659873.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica T6c] gi|109698899|gb|ABG38819.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica T6c] Length = 128 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%) Query: 45 ENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 + AE + E L + + +EN + RA ++ + + +A G+ V+ +S Sbjct: 13 DLAELEYQLERSKLPDDAIRAIENELDRATIVACKDLPENVVAIGSQVTFKILDSQKVFT 72 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++ +S+ +PI ALIG G I G+++ EI++V Sbjct: 73 KALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRGQQSVEIIKVE 124 >gi|319653573|ref|ZP_08007672.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2] gi|317394772|gb|EFV75511.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + ++ ++E+E IT + ++ G V+++ D+++Y I + Sbjct: 40 ERKKDFLSNYVSEVEKYITLCNQA-PAEPPLRKVLIGTKVTVLFDGEDDREDYHICLPDQ 98 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +D +G +S SP+ R L+ K +G+ S+ P G+ I ++ + Sbjct: 99 SDPDNGCISFLSPVGRQLLLKNMGEQTSLIIPSGQLDVVIEKISY 143 >gi|159043110|ref|YP_001531904.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] gi|157910870|gb|ABV92303.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] Length = 143 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 40 YGDLSENAE--YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97 D E+ E Q R+ + I RA ++ S M + ++ G+ V+ ++ Sbjct: 21 NADDLEHLEGLADGMMRRQPALADRLF---DEIARARIVAPSKMPKNVVSMGSRVTYRDE 77 Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 +G +K+ +V +EAD+ VS+++PI AL+G G G ++ I+QV Sbjct: 78 ATGQEKSVTLVYPEEADIARLRVSVTTPIGVALLGLAEGASFHWETRGNQRRMLTIIQVE 137 >gi|261819630|ref|YP_003257736.1| nucleoside diphosphate kinase regulator [Pectobacterium wasabiae WPP163] gi|261603643|gb|ACX86129.1| GreA/GreB family elongation factor [Pectobacterium wasabiae WPP163] Length = 136 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q LNE + RAE++ +++ + Sbjct: 4 PNLTISELDAERLDKLLEQPAFADSDIAQALNE--------ELDRAEILPSASIPSHVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGNAITWQLPNGE 115 Query: 148 K-TYEILQVLW 157 + E+L++L+ Sbjct: 116 EARIEVLELLY 126 >gi|315500720|ref|YP_004089521.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB 48] gi|315418732|gb|ADU15370.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB 48] Length = 159 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 + + A+ + + +++ FG TV + ++ G + ++IVG+ EA+ + G + Sbjct: 70 RDLRYYTARLGSAQPV-APVANANKVVFGCTVEIA-RDDGRVQTFKIVGEDEANPKVGKI 127 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S SP+ARAL+G+E GD ++ + EIL V Sbjct: 128 SYVSPLARALLGREAGDETQISG----ASVEILTVK 159 >gi|253686674|ref|YP_003015864.1| GreA/GreB family elongation factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753252|gb|ACT11328.1| GreA/GreB family elongation factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 136 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q LNE + RAE++ +++ + Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRAEILPSASIPSHVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAALLGMHVGNAITWQLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E+L++L+ Sbjct: 116 ETRIEVLELLY 126 >gi|258516280|ref|YP_003192502.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans DSM 771] gi|257779985|gb|ACV63879.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans DSM 771] Length = 135 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + +LEN + RA ++D + D I + L + + + +V ++AD+ + +SI Sbjct: 33 VKKLENELYRAIIVDSQQVPRDVITMNSKALLQLNDEDIEVS--LVYPEDADLGAMKLSI 90 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SPI A++G + G+ I P G I ++L+ Sbjct: 91 FSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILY 125 >gi|227114046|ref|ZP_03827702.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 136 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q LNE + RA+++ +++ + Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRADILPAASIPSHVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAALLGMHVGNSITWQLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E+L++L+ Sbjct: 116 ETRIEVLELLY 126 >gi|28900843|ref|NP_800498.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260362544|ref|ZP_05775464.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus K5030] gi|260896745|ref|ZP_05905241.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus Peru-466] gi|28809289|dbj|BAC62331.1| regulator of nucleoside diphosphate kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308087377|gb|EFO37072.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus Peru-466] gi|308115247|gb|EFO52787.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus K5030] Length = 135 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125 >gi|332308302|ref|YP_004436153.1| GreA/GreB family elongation factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175631|gb|AEE24885.1| GreA/GreB family elongation factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 126 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%) Query: 45 ENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 + AE + E L + +EN + RA ++ + + +A G+ V+ +S Sbjct: 11 DLAELEYQLERAKLPADTVRAIENELDRASIVACKDLPENVVAIGSKVTFKILDSQKIFT 70 Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + +S+ +PI ALIG G I+ GE++ EI+ V Sbjct: 71 KTLCLPHDTIKYEDSISVFAPIGSALIGLSTGQCITWQTQRGEQSVEIINVE 122 >gi|153836903|ref|ZP_01989570.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus AQ3810] gi|149749861|gb|EDM60606.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus AQ3810] Length = 135 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125 >gi|260901477|ref|ZP_05909872.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus AQ4037] gi|308107692|gb|EFO45232.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus AQ4037] Length = 135 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA V++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFSGEERTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125 >gi|227326625|ref|ZP_03830649.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 136 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q LNE + RA+++ +++ + Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRADILPSASIPSHVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGNSITWQLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E+L++L+ Sbjct: 116 ETRIEVLELLY 126 >gi|328470747|gb|EGF41658.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus 10329] Length = 135 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + ELE + RA +++ M + + +TV +V Sbjct: 19 ALLDKMPNIAAELVELEAELDRATILEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ ALIG +G + P KT EI+ + + Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125 >gi|310816463|ref|YP_003964427.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare Y25] gi|308755198|gb|ADO43127.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare Y25] Length = 129 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 + + PR++ + + L+E E + + ++ + ++RA+V+ + + Sbjct: 3 KTKLPRVVISDATMAVLERLAEGLERRNPELAEHFVD--------ELSRAKVVKSAALPV 54 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + G+TV+ ++ +G + + + AD+ G +S+++PI ALIG G S A Sbjct: 55 DTVDLGSTVTFRDETTGKSQTVTLALPENADINEGRISVATPIGVALIGLSAGAKFSWLA 114 Query: 144 PGGEKT 149 G K Sbjct: 115 NTGTKH 120 >gi|218533326|ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218525629|gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 137 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 ++ L + + R +++ GD G+ V + ++G ++ +V EAD++ G VSI Sbjct: 38 VSFLSDELDRVQIVRGGAAQGDFARMGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSI 97 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +PI ALIG G I GE + +L V Sbjct: 98 LTPIGAALIGLSKGQSIDWATRTGETRRLTVLAVR 132 >gi|77165386|ref|YP_343911.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707] gi|254434724|ref|ZP_05048232.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27] gi|76883700|gb|ABA58381.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707] gi|207091057|gb|EDZ68328.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27] Length = 129 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA VI + + + + +++N+G+++ ++V +EA+ ++G +S+ +P+ Sbjct: 28 EELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANTRAGKISVLAPVG 87 Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G +G+ I P GE + + Q+L+ Sbjct: 88 SALLGLSVGESIDWKFPSGEVRRLSVEQILF 118 >gi|157372615|ref|YP_001480604.1| nucleoside diphosphate kinase regulator [Serratia proteamaculans 568] gi|157324379|gb|ABV43476.1| GreA/GreB family elongation factor [Serratia proteamaculans 568] Length = 136 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RAE++ S + + + + V + ++ ++ +V +S+ +P+ A Sbjct: 38 LDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLGAA 97 Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVLW 157 L+G +G+ I+ P GE+ E+L++L+ Sbjct: 98 LLGMHVGNQITWQLPNGEEARIEVLELLY 126 >gi|163748064|ref|ZP_02155383.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] gi|161378670|gb|EDQ03120.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] Length = 145 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA ++ + D + G V+ ++ +G +V Q AD+ +GLVS+ +PI Sbjct: 46 EELGRARIVTPQRLRADVVDLGREVTYHDEATGKDHTVTLVLPQTADISNGLVSVMTPIG 105 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155 ALIG G + G + +IL+V Sbjct: 106 VALIGLAEGAVFHWETREGQRRELKILKV 134 >gi|22124088|ref|NP_667511.1| nucleoside diphosphate kinase regulator [Yersinia pestis KIM 10] gi|45443579|ref|NP_995118.1| nucleoside diphosphate kinase regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597830|ref|YP_072021.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis IP 32953] gi|108809699|ref|YP_653615.1| nucleoside diphosphate kinase regulator [Yersinia pestis Antiqua] gi|108813637|ref|YP_649404.1| nucleoside diphosphate kinase regulator [Yersinia pestis Nepal516] gi|145597618|ref|YP_001161694.1| nucleoside diphosphate kinase regulator [Yersinia pestis Pestoides F] gi|153948732|ref|YP_001399422.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis IP 31758] gi|153997370|ref|ZP_02022470.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CA88-4125] gi|162421792|ref|YP_001605709.1| nucleoside diphosphate kinase regulator [Yersinia pestis Angola] gi|165928305|ref|ZP_02224137.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937429|ref|ZP_02225992.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. IP275] gi|166212183|ref|ZP_02238218.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167400655|ref|ZP_02306164.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167426754|ref|ZP_02318507.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468355|ref|ZP_02333059.1| regulator of nucleoside diphosphate kinase [Yersinia pestis FV-1] gi|170022744|ref|YP_001719249.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis YPIII] gi|186897022|ref|YP_001874134.1| nucleoside diphosphate kinase regulator [Yersinia pseudotuberculosis PB1/+] gi|218930702|ref|YP_002348577.1| nucleoside diphosphate kinase regulator [Yersinia pestis CO92] gi|229836848|ref|ZP_04457013.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides A] gi|229839254|ref|ZP_04459413.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899819|ref|ZP_04514960.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. India 195] gi|229904131|ref|ZP_04519242.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|270488565|ref|ZP_06205639.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM D27] gi|294505286|ref|YP_003569348.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003] gi|21956837|gb|AAM83762.1|AE013616_8 regulator of nucleoside diphosphate kinase [Yersinia pestis KIM 10] gi|45438449|gb|AAS63995.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Microtus str. 91001] gi|51591112|emb|CAH22776.1| regulator of nucleoside diphosphate kinase [Yersinia pseudotuberculosis IP 32953] gi|108777285|gb|ABG19804.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|108781612|gb|ABG15670.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Antiqua] gi|115349313|emb|CAL22282.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CO92] gi|145209314|gb|ABP38721.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides F] gi|149289007|gb|EDM39087.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CA88-4125] gi|152960227|gb|ABS47688.1| regulator of nucleoside diphosphate kinase [Yersinia pseudotuberculosis IP 31758] gi|162354607|gb|ABX88555.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Angola] gi|165914534|gb|EDR33148.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. IP275] gi|165919693|gb|EDR37026.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. F1991016] gi|166206929|gb|EDR51409.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. B42003004] gi|167050023|gb|EDR61431.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054281|gb|EDR64102.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749278|gb|ACA66796.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis YPIII] gi|186700048|gb|ACC90677.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis PB1/+] gi|229678249|gb|EEO74354.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Nepal516] gi|229687311|gb|EEO79386.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695620|gb|EEO85667.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705791|gb|EEO91800.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Pestoides A] gi|262363349|gb|ACY60070.1| nucleoside diphosphate kinase regulator [Yersinia pestis D106004] gi|262367273|gb|ACY63830.1| nucleoside diphosphate kinase regulator [Yersinia pestis D182038] gi|270337069|gb|EFA47846.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM D27] gi|294355745|gb|ADE66086.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003] gi|320017137|gb|ADW00709.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 136 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RAE++ + + D + + V ++ NS ++ +V + +S+ +P+ Sbjct: 36 EELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEKT-YEILQVLW 157 AL+G + D IS PGG++T +L++L+ Sbjct: 96 AALLGLHVNDEISWKLPGGDETRITVLELLY 126 >gi|218533329|ref|YP_002424144.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218525632|gb|ACK86216.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 140 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88 R+ K A +G L+ A AA + G +A + + RA+V+ + + Sbjct: 12 RLPKIKVTAEDHGRLAGLA--SAAMDRMPAVAGYLA---DELDRAQVVRSGRAAVGCVRM 66 Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE- 147 G V + +G + +V EAD+ G +S+ +P+ ALIG G I GE Sbjct: 67 GCEVEFRDDTTGKVQAVTLVYPGEADIGQGRISVLTPVGAALIGLSAGQSIRWVTRMGET 126 Query: 148 KTYEILQVL 156 K +L V Sbjct: 127 KRLTVLDVR 135 >gi|46206102|ref|ZP_00047698.2| COG0782: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 74 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 5/75 (6%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 D + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ARAL GK +GD ++V Sbjct: 5 DDDVVRFGATVTVL-REDDTRQIFRIVGEDEADPAAGSISYVAPLARALTGKGVGDTVTV 63 Query: 142 NAPGGEKTYEILQVL 156 N +EI ++ Sbjct: 64 NG----HDFEIAEIR 74 >gi|254429947|ref|ZP_05043654.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881] gi|196196116|gb|EDX91075.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881] Length = 131 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA V+ M D + + + E+ G + + +V Q D VSI +P Sbjct: 31 LEEELLRATVVAPEAMPADVVTMNSRIRCREQARGREMSLTLVYPQ--DNGPERVSILAP 88 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G +G I AP G+ EIL V + Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKILKLEILAVEY 121 >gi|298291344|ref|YP_003693283.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296927855|gb|ADH88664.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 166 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 R R + +E + A + ++ + + AE +D Sbjct: 23 HRNLVTRRGLALIEAELARHRAALAAAGAKGDRDGAAQASRELRYWSSRRANAEPVDPPA 82 Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 G+ I FG V+L E G ++ ++IVG+ EA+ + G ++ SP+ARAL+GK +GD +S Sbjct: 83 -EGEAITFGMQVTL-EAEDGAQRRFRIVGEDEAEPREGRIAWISPVARALMGKWIGDEVS 140 Query: 141 VNAPGGEKTYEILQV 155 P G T EI+ V Sbjct: 141 --LPVG--TMEIVAV 151 >gi|83747221|ref|ZP_00944263.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum UW551] gi|207721693|ref|YP_002252132.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum MolK2] gi|207744206|ref|YP_002260598.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum IPO1609] gi|83726045|gb|EAP73181.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum UW551] gi|206586855|emb|CAQ17440.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum MolK2] gi|206595611|emb|CAQ62538.1| regulator of nucleoside diphosphate kinase protein [Ralstonia solanacearum IPO1609] Length = 134 Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V + SG + + +V EAD+ + +S+ SP Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVRVR-AASGVAQQWTLVYPDEADLAAARLSVCSP 91 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G GD + AP G I +++ Sbjct: 92 MGAALLGGRAGDAVHYVAPDGTTHALRIDAIVF 124 >gi|302525225|ref|ZP_07277567.1| GreA/GreB family elongation factor [Streptomyces sp. AA4] gi|302434120|gb|EFL05936.1| GreA/GreB family elongation factor [Streptomyces sp. AA4] Length = 148 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E + + R+ +L++++ A V + G G +++ + G + + + E Sbjct: 38 ERRQHRQARIRQLQDLLQNAVVGEDPPDDG-IAEPGMVLTVR-YDDGGVETFLLAARDEV 95 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 + S SP+ RAL G + G+ P G Sbjct: 96 GGGLEVYSPDSPLGRALHGAKPGEQREYEVPSG 128 >gi|299065804|emb|CBJ36982.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum CMR15] Length = 138 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V + +G + + +V EA++ + +S+ SP Sbjct: 37 VDDLIARANVVPGDRIPADVVTMNSVVRVH-AGAGTAQAWTLVYPDEANLAAARLSVLSP 95 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G +GD + AP G I +++ Sbjct: 96 MGAALLGGRVGDEVHYAAPDGSTHALRIDAIVF 128 >gi|300690546|ref|YP_003751541.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum PSI07] gi|299077606|emb|CBJ50241.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum PSI07] Length = 134 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V + SG + + +V EA++ + +S+ SP Sbjct: 33 VDDLIARANVVPSDMIPADVVTMNSVVRVR-AGSGAAQEWTLVYPDEANLAAARLSVLSP 91 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G GD + AP G I +++ Sbjct: 92 MGSALLGGRAGDEVHYAAPDGSAHALRIDAIIF 124 >gi|188583383|ref|YP_001926828.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] gi|179346881|gb|ACB82293.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] Length = 137 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 + L + + R +++ T GD G+ V + ++G ++ +V +AD+ G VSI Sbjct: 39 SFLSDELDRVQIVRGGTAEGDFARMGSRVDFRDNSTGRMQSVTLVYPGDADIAQGKVSIL 98 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +PI ALIG G I GE + +L+V Sbjct: 99 TPIGAALIGLSKGQSIDWATRTGEIRRLTVLEVR 132 >gi|160897843|ref|YP_001563425.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1] gi|160363427|gb|ABX35040.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1] Length = 134 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 +A + Q GR A LE + RA+V++ M + + +TV SG +V Sbjct: 18 EALLDKQPAFPGREA-LEAELDRADVLEPKEMPPNVVTMNSTVRFTLLESGKSNTLTLVY 76 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +E D S VS+ +P+ AL+G +GD + P G+ T + + + Sbjct: 77 PKEMDGSSDKVSVFAPVGIALLGLSVGDQSRMAGPSGQVTVRVDAIEF 124 >gi|300114334|ref|YP_003760909.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] gi|299540271|gb|ADJ28588.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113] Length = 129 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RA VI + + + + +++N+G+++ ++V +EA++++G +S+ +P+ Sbjct: 28 EELDRATVIPRERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANMRAGKISVLAPVG 87 Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G +G+ I P GE + + ++L+ Sbjct: 88 SALLGLSVGESIDWKFPSGEVRRLSVERILF 118 >gi|110634551|ref|YP_674759.1| nucleoside diphosphate kinase regulator [Mesorhizobium sp. BNC1] gi|110285535|gb|ABG63594.1| GreA/GreB family elongation factor [Chelativorans sp. BNC1] Length = 135 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V++ + + + G+T++ + G+ + +V EAD+ G VS+++P+ Sbjct: 39 SELERARVVEDAALPDTVVRMGSTLTYT-ADDGEPQTVSLVYPGEADIAQGRVSVTTPVG 97 Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156 ALIG + I A G +++ + Sbjct: 98 TALIGLSVNQTIDWTARDGRVHRLKVINIS 127 >gi|16126441|ref|NP_421005.1| transcription elongation factor regulatory protein [Caulobacter crescentus CB15] gi|221235222|ref|YP_002517658.1| transcription elongation factor regulatory protein [Caulobacter crescentus NA1000] gi|13423705|gb|AAK24173.1| transcription elongation factor GreA/GreB, family [Caulobacter crescentus CB15] gi|220964394|gb|ACL95750.1| transcription elongation factor greB [Caulobacter crescentus NA1000] Length = 160 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + + FG V+ E+ G + ++IVG+ +AD G +S +PIARAL+GK +G++ Sbjct: 89 DPAKSVVQFGDRVTF-EREDGRVQTFRIVGEDQADPAKGTISYIAPIARALLGKAVGEVS 147 Query: 140 SVNAPGGEKTYEILQV 155 + APGGE EI + Sbjct: 148 A--APGGEI--EITAI 159 >gi|260773794|ref|ZP_05882709.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii CIP 69.14] gi|260610755|gb|EEX35959.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii CIP 69.14] Length = 136 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A + + LEN + RA V++ + D + +TV + S D +V Sbjct: 20 ALMDKLPKLSKELERLENELDRATVLNPEEIPADVVTMNSTVKFKFQGSDDVMQKTLVYP 79 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + +SI +P+ AL+G G ++ P G E+T EI+ ++ Sbjct: 80 HDVKGNDD-ISIFAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDII 125 >gi|123443968|ref|YP_001007938.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090929|emb|CAL13811.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 136 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ Sbjct: 36 EELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157 AL+G + D IS PGG++ +L++L+ Sbjct: 96 AALLGLHVNDEISWKLPGGDEARITVLELLY 126 >gi|163747966|ref|ZP_02155295.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] gi|161378763|gb|EDQ03203.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45] Length = 146 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93 I A L E AE R E I RA++++ M GD + G+ V+ Sbjct: 19 ILNAADLVHLEELAE--GMMHRHPTLADR--FFEE-IGRAQIVEDQQMPGDVVGIGSKVT 73 Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA--PGGEKTYE 151 ++ +G K+ +V ++AD+ VS+ +PI AL+G G + Sbjct: 74 YRDETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLT 133 Query: 152 ILQVL 156 IL+V Sbjct: 134 ILKVE 138 >gi|159042970|ref|YP_001531764.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] gi|157910730|gb|ABV92163.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12] Length = 148 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RPRI+ + L+E A + R+ E I RA ++ + M + Sbjct: 17 RRPRIVINADDLSHIEALAE-----GAMDRNPALADRLLE---EIARARIVPAAKMPLNV 68 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 I G + + ++ +G ++ +V ++AD+ VS+ +PI AL+G G + N G Sbjct: 69 IGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRG 128 Query: 146 GEKT-YEILQVL 156 E+ +++V Sbjct: 129 EERRMLTVIRVS 140 >gi|332293562|ref|YP_004432171.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] gi|332171648|gb|AEE20903.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] Length = 167 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 16/152 (10%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VTS G ++++EL + L E E + + + G+ Sbjct: 30 YVTSHGLSQLKEELSTLDTK--------------ISTLDETDERER-RRALAVLNGKRNL 74 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L I ++D I FGATV+ QIVG EA V+ ++ ++P Sbjct: 75 LLERIQSVRLLDHIK-DEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAP 133 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 IARALIGK + + + E+ I +++ Sbjct: 134 IARALIGKRIDETTTFQLGNEERKLTIKNIVY 165 >gi|300724985|ref|YP_003714310.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila ATCC 19061] gi|297631527|emb|CBJ92234.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila ATCC 19061] Length = 136 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P+II +A L E + LNE + RAE++ + D + Sbjct: 4 PKIIINELDAERLDSLLEQPAFANTGIADALNE--------ELDRAEILPPVDIPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + + ++ S +++ +V + +S+ +P+ AL+G + I+ P GE Sbjct: 56 MNSEIRFIDLGSNEERVRTLVYPASLQDSTKQLSVMAPLGAALLGLRVNGEITCQLPNGE 115 Query: 148 KT-YEILQVLW 157 +T ++L++L+ Sbjct: 116 ETRIKVLEILY 126 >gi|270263263|ref|ZP_06191533.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042951|gb|EFA16045.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 136 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RAE++ + + + + + V + ++ ++ +V +S+ +P+ Sbjct: 36 DELDRAEILPPAQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157 AL+G +G+ I+ P GE+ E+L++L+ Sbjct: 96 AALLGMHVGNQITWQLPNGEEARIEVLELLY 126 >gi|89891757|ref|ZP_01203260.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7] gi|89516092|gb|EAS18756.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7] Length = 139 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Query: 43 LSENAEYQAAKELQN--------LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 + E EY K + N + + L + + A+++D M D I F + +++ Sbjct: 7 ILEKKEYVYLKRILNISGYAEDFETQKSLQRLTDELKNAQILDELDMPQDVIRFNSKITV 66 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 N G K QIV D+ +SI +P+A AL+G DII N P G + EI++ Sbjct: 67 K-SNKGWSKKIQIVIPALKDLDLDRISILTPLASALLGYAQSDIIQWNLPSGLQELEIVE 125 Query: 155 VL 156 V Sbjct: 126 VT 127 >gi|330812543|ref|YP_004357005.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380651|gb|AEA72001.1| putative transcriptional regulator, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 136 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A + V+ + D + + V E++SG + +V Q+A+ G +SI Sbjct: 31 IALQTELDRAENVVGHEEVPADVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGRISI 90 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +P+ AL+G ++G I APGG+ +L+V Sbjct: 91 LAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVE 125 >gi|237746097|ref|ZP_04576577.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS] gi|229377448|gb|EEO27539.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS] Length = 140 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 ERP I + + NA+Y+ N MA+L+ + RA V++ + D Sbjct: 13 ERPPITVTTHDYERLEQMLRNAKYR--------NIPGMADLQRELDRANVVEPEELPEDV 64 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 I +T ++ + D+ +V +AD S +S+ +P+ AL+G G I PG Sbjct: 65 ITINSTARFIDDCTNDQYEITLVYPDKADGVS-KISVLAPVGSALLGLSAGQSIPWQVPG 123 Query: 146 GEK-TYEILQVL 156 +K +L V Sbjct: 124 RQKLQLRVLDVK 135 >gi|83592278|ref|YP_426030.1| nucleoside diphosphate kinase regulator [Rhodospirillum rubrum ATCC 11170] gi|83575192|gb|ABC21743.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC 11170] Length = 136 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 I RA V+ ++ D + GA V+ ++++G + +V EAD+ G +SI +PI A Sbjct: 46 IDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVA 105 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156 LIG +G I G E+ +L V Sbjct: 106 LIGLAVGASIDWLTRDGDERHLSVLAVR 133 >gi|125975505|ref|YP_001039415.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC 27405] gi|256004207|ref|ZP_05429190.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM 2360] gi|281419462|ref|ZP_06250476.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|125715730|gb|ABN54222.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC 27405] gi|255991797|gb|EEU01896.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM 2360] gi|281406868|gb|EFB37132.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20] gi|316939625|gb|ADU73659.1| transcription elongation factor GreA/GreB domain-containing protein [Clostridium thermocellum DSM 1313] Length = 160 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%) Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFG 89 + + E + E + + Q + + + + + V + + + Sbjct: 18 VSEIEKERDMLLNEHYAEETKESINFQEFFKNYLDRINSYLNTVRVDKNGSEACPFVIIN 77 Query: 90 ATVSLVEKNSGDKKNYQIV--GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + + +K Y+IV +E D S SP+ RAL+ K + D +SV P G Sbjct: 78 SIVEVFDCEEEEKCKYRIVLPFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGM 137 Query: 148 KTYEILQVL 156 Y IL + Sbjct: 138 LHYTILDIT 146 >gi|307543993|ref|YP_003896472.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM 2581] gi|307216017|emb|CBV41287.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM 2581] Length = 136 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 12/135 (8%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 RP +I +A L + A A LE + R EV++ + D Sbjct: 2 VARPPLIINRLDAERLQRLIDAAGEDAVA----------LSLEEELERGEVLEPEQIPAD 51 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII-SVNA 143 I+ + V + + +V D VS+ +P+ AL+G +GD+I Sbjct: 52 VISMNSRVRFTDLTREREIVKTLVYPHALDATEDGVSVMAPVGAALLGLHVGDVIEEWPL 111 Query: 144 PGGEKT-YEILQVLW 157 PGG++T + +LW Sbjct: 112 PGGKQTSLRVDAILW 126 >gi|332995758|gb|AEF05813.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 87 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 D S +++ FGA V + G ++VG E + +SI SP+ARAL+GKE Sbjct: 2 DYSPEQENKVYFGAWVEIEN-EQGQVLELRLVGYDEIFGRRDYISIDSPMARALVGKEED 60 Query: 137 DIISVNAPGGEKTYEILQVLW 157 D I+V K + I ++ + Sbjct: 61 DDITVKTETDVKEWWINRIWY 81 >gi|229593308|ref|YP_002875427.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens SBW25] gi|229365174|emb|CAY53437.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens SBW25] Length = 136 Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 EV+ + + ++V E+ SG + +V ++A+ G +SI +P+ AL+G Sbjct: 42 EVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDANADEGKISILAPVGSALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVL 156 ++G I APGG+ E+L V Sbjct: 102 KVGQHIDWPAPGGKTLKLELLSVE 125 >gi|325286071|ref|YP_004261861.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489] gi|324321525|gb|ADY28990.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489] Length = 139 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A+L N + A V D M D I F + V++ + G +K++Q+V ++D+++ +SI Sbjct: 35 IAKLNNELKTAAVKDEKDMPTDVIRFNSIVTVT-ADEGWQKSFQLVKPSDSDLKNKKLSI 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+ A+IG GD + P GEKT + V Sbjct: 94 LTPMGTAVIGYAKGDKLLWEFPAGEKTLTVNNVE 127 >gi|240168559|ref|ZP_04747218.1| nucleoside diphosphate kinase regulator [Mycobacterium kansasii ATCC 12478] Length = 161 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 10/160 (6%) Query: 1 MVDKIPVT---SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57 M +++ T D + EL +Q I+ ++ GD + AE + Sbjct: 1 MSEEVQSTGLAEAARDHLAAELARLRQRHDRLEIEVKNDRGMVGDHGDAAEAIQRADELA 60 Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114 + R+ EL+ + +G G T + G+ I+ + Sbjct: 61 VLADRINELDRRLKSG----PLRDAGSDTLPGGTEVTLRFPDGEVVTMHVISIIEESPEG 116 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 ++ ++ +SP+ +AL G++ GD ++ + P G E++ Sbjct: 117 HEAETLTANSPLGQALAGRQPGDTVTYSTPRGPSQVELIA 156 >gi|120598560|ref|YP_963134.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1] gi|146293361|ref|YP_001183785.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|120558653|gb|ABM24580.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1] gi|145565051|gb|ABP75986.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 135 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RAE++ + M + + + V +S D ++V ++A+ + G +SI +P Sbjct: 34 LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE-GTISILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G GD I PGG I ++++ Sbjct: 93 VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125 >gi|262191545|ref|ZP_06049727.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT 5369-93] gi|262032553|gb|EEY51109.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT 5369-93] Length = 135 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|153824399|ref|ZP_01977066.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2] gi|149741953|gb|EDM55982.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2] Length = 135 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|220922751|ref|YP_002498053.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] gi|219947358|gb|ACL57750.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] Length = 141 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 AA++ +A + + RA+++ + G V + +G + +V Sbjct: 33 AAQDRMPDVASCLA---DELDRAQIVAGRGRLPPFVRMGCQVEFRDDTTGRVQIVTLVYP 89 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 EA+++ G +S+ +PI ALIG G I+ G K+ +L V Sbjct: 90 GEANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVLDVR 136 >gi|213162024|ref|ZP_03347734.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 47 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 35/47 (74%) Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 EAD + L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 1 EADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 47 >gi|297580409|ref|ZP_06942336.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385] gi|297536055|gb|EFH74889.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385] Length = 135 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGG-EKTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125 >gi|319426662|gb|ADV54736.1| regulator of nucleoside diphosphate kinase, Rnk [Shewanella putrefaciens 200] Length = 135 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RAE++ + M + + + V +S D ++V ++A+ + G +SI +P Sbjct: 34 LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE-GTISILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G GD I PGG I ++++ Sbjct: 93 VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125 >gi|331697299|ref|YP_004333538.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] gi|326951988|gb|AEA25685.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans CB1190] Length = 151 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 + +EL + R IS+ D E+ A ++ + + R+ +L Sbjct: 11 ALLEELDLLRARRRELEWSLISDDHRPHDFGEHGATTALRDEIDWVDRRIRDL-----VH 65 Query: 74 EVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 +V + GD R+ + V+L + G + Q+ + D V+ SP+ RAL Sbjct: 66 QVWEAGRPDGDTSERVGLYSVVTLRFPD-GSSETLQV--TRFPDEDVPAVTPESPLGRAL 122 Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156 +G + GD I+ AP G + +V Sbjct: 123 LGAQPGDEITWKAPDGRLRARVERVR 148 >gi|70730822|ref|YP_260563.1| acetyltransferase [Pseudomonas fluorescens Pf-5] gi|68345121|gb|AAY92727.1| acetyltransferase, GNAT family family [Pseudomonas fluorescens Pf-5] Length = 379 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ + RA V+ ++ + I + L ++ +V ++AD +G S+ Sbjct: 277 IVELEHELERAIVVKPQQVARNVITMNSRALLQ--LDDEEIEVALVYPEDADSTAGKHSV 334 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S I A++G + GD I + EI +VL+ Sbjct: 335 YSDIGAAILGYQEGDTIDWRISDRTRRIEIRKVLY 369 >gi|17547355|ref|NP_520757.1| regulator of nucleoside diphosphate kinase transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429658|emb|CAD16343.1| putative regulator of nucleoside diphosphate kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 134 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++++I RA V+ + D + + V + +G + + +V EA++ + +S+ SP Sbjct: 33 VDDLIVRANVVPGDRIPADVVTMNSVVRVH-AGAGTAQEWTLVYPDEANLAAARLSVLSP 91 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + AL+G GD + AP G I +++ Sbjct: 92 MGAALLGGRAGDEVHYAAPDGSTHALRIDAIVF 124 >gi|15601365|ref|NP_232996.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587466|ref|ZP_01677234.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 2740-80] gi|121725791|ref|ZP_01679091.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52] gi|147672055|ref|YP_001215388.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O395] gi|153817965|ref|ZP_01970632.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC 8457] gi|153830764|ref|ZP_01983431.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39] gi|227812174|ref|YP_002812184.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2] gi|229506224|ref|ZP_04395733.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX 330286] gi|229509917|ref|ZP_04399397.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33] gi|229516522|ref|ZP_04405969.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9] gi|229525966|ref|ZP_04415370.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv. albensis VL426] gi|229528560|ref|ZP_04417951.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 12129(1)] gi|229605764|ref|YP_002876468.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MJ-1236] gi|254849767|ref|ZP_05239117.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10] gi|255746617|ref|ZP_05420564.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS 101] gi|262158791|ref|ZP_06029904.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE 91/1] gi|262168458|ref|ZP_06036154.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27] gi|298499416|ref|ZP_07009222.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757] gi|9658019|gb|AAF96508.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548301|gb|EAX58367.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 2740-80] gi|121631556|gb|EAX63924.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52] gi|126511503|gb|EAZ74097.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC 8457] gi|146314438|gb|ABQ18978.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395] gi|148873748|gb|EDL71883.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39] gi|227011316|gb|ACP07527.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2] gi|227015333|gb|ACP11542.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395] gi|229334922|gb|EEO00408.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 12129(1)] gi|229336124|gb|EEO01142.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv. albensis VL426] gi|229346403|gb|EEO11374.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9] gi|229352362|gb|EEO17302.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33] gi|229356575|gb|EEO21493.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX 330286] gi|229372250|gb|ACQ62672.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MJ-1236] gi|254845472|gb|EET23886.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10] gi|255736371|gb|EET91769.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS 101] gi|262022987|gb|EEY41692.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27] gi|262029364|gb|EEY48015.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE 91/1] gi|297541397|gb|EFH77448.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757] gi|327485632|gb|AEA80038.1| Regulator of nucleoside diphosphate kinase [Vibrio cholerae LMA3894-4] Length = 135 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M D + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPEDVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|261212380|ref|ZP_05926665.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341] gi|260838311|gb|EEX64967.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341] Length = 135 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDMKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGG-EKTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125 >gi|70733293|ref|YP_263067.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens Pf-5] gi|68347592|gb|AAY95198.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens Pf-5] Length = 137 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A + ++ + + + V E++SG + +V Q+A+ G +SI Sbjct: 32 IALQTELDRAETLVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGKISI 91 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 +P+ AL+G ++G I APGG+ +L+V + Sbjct: 92 LAPVGSALLGLQVGQYIDWPAPGGKTLKLTLLEVEY 127 >gi|90422718|ref|YP_531088.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] gi|90104732|gb|ABD86769.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB18] Length = 154 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 ++ FG+TV++ +N ++ ++IVG+ EAD +G +S P+AR+L GK +GD++ Sbjct: 85 DVTKVRFGSTVTIR-RNDDRRQTFRIVGEDEADPPNGTISHVLPLARSLFGKRVGDVVR- 142 Query: 142 NAPGGEKTYEILQV 155 G EI +V Sbjct: 143 ---AGTGEAEIEEV 153 >gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM 44728] gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM 44728] Length = 152 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59 M K P+ + ++Q+L + ER R+ +++ GD ++ A+ L Sbjct: 1 MAGKSAPIGANARHTLEQDLAEVRA-ERDRVAATLTDTDTTGDSADQAQELQRVTDLQLL 59 Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + R+ +L + + + D + G+TV++ + + I + ADV L Sbjct: 60 DARVEKLTARLDAS--ATATQGRTDLVDVGSTVTIRFSDD-TTETLHI--GEIADVDDQL 114 Query: 120 -VSISSPIARALIGKELGDIISVNAPGG 146 V+ SP+ RAL+G GD +S N P G Sbjct: 115 LVTAGSPLGRALLGHRAGDTVSYNTPSG 142 >gi|313676808|ref|YP_004054804.1| grea/greb family elongation factor [Marivirga tractuosa DSM 4126] gi|312943506|gb|ADR22696.1| GreA/GreB family elongation factor [Marivirga tractuosa DSM 4126] Length = 149 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91 + I E + +N + + NE + +L N ++ A V + M D I G+ Sbjct: 26 QIILEEMEF-QFIQNLVKKFLASDETQNEAWIIKLTNELSNAIVKRENEMPVDVIKIGSK 84 Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151 V + E G + N +V E ++ +S+ SP+ ALIG GD + + P G+ T + Sbjct: 85 VDV-ETPYGRRNNIILVKPTEKNINENKISLLSPMGSALIGYAKGDEVDWDLPKGKSTIK 143 Query: 152 ILQVL 156 IL V+ Sbjct: 144 ILNVV 148 >gi|229513214|ref|ZP_04402679.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21] gi|229349624|gb|EEO14579.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21] Length = 135 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|153217601|ref|ZP_01951282.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587] gi|124113451|gb|EAY32271.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587] Length = 109 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 13 DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 71 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 72 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 99 >gi|229523094|ref|ZP_04412506.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM 11079-80] gi|229339944|gb|EEO04954.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM 11079-80] Length = 135 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ + M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125 >gi|18034019|gb|AAL57322.1|AF395125_3 GreA [Borrelia hermsii] Length = 81 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + FG V+++ K++G ++ Y I G E++ G++S SP L+ + GD + Sbjct: 6 VGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDAKEGDNLDFVIND 65 Query: 146 GEKTYEILQVL 156 Y + ++ Sbjct: 66 TRFQYYVKKIE 76 >gi|77461715|ref|YP_351222.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens Pf0-1] gi|77385718|gb|ABA77231.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens Pf0-1] Length = 136 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A + ++ + D + + V E++SG + +V + A+ G VSI Sbjct: 31 IALQTELDRADTLVGHDEVPADVVTMNSRVHCREESSGKDYHLTLVYPKHANADEGKVSI 90 Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 +P+ AL+G ++G I APGG+ +L+V Sbjct: 91 LAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVE 125 >gi|84499314|ref|ZP_00997602.1| putative nucleoside diphosphate kinase regulator [Oceanicola batsensis HTCC2597] gi|84392458|gb|EAQ04669.1| putative nucleoside diphosphate kinase regulator [Oceanicola batsensis HTCC2597] Length = 147 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP+++ R L+E A Q +L + G + RA ++ + + + + Sbjct: 14 RPKVVIGADCLRRLEALAEGA-IQRNPDLADRLLGEI-------GRARIVPAAKLPQNVV 65 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G V+ ++ +G +K V ++AD+ G +SI +PI ALIG G + + G Sbjct: 66 AIGRAVTYRDETTGQEKRVTPVFPEDADIARGRISILTPIGVALIGLAEGASLHWDTRDG 125 Query: 147 EKTY-EILQV 155 E+ +L V Sbjct: 126 ERRVLTVLHV 135 >gi|255319745|ref|ZP_05360952.1| GreA/GreB family elongation factor [Acinetobacter radioresistens SK82] gi|262379537|ref|ZP_06072693.1| GreA/GreB family elongation factor [Acinetobacter radioresistens SH164] gi|255303199|gb|EET82409.1| GreA/GreB family elongation factor [Acinetobacter radioresistens SK82] gi|262298994|gb|EEY86907.1| GreA/GreB family elongation factor [Acinetobacter radioresistens SH164] Length = 134 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E Q+ + LE+ + RAEV++ + + ++ V + S + Q+V + Sbjct: 21 EHQSHMTQTIEHLEDELARAEVVEPHEIPANVVSMNTRVLITIAPSTEPTEIQLVYPHDF 80 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 G V++ +PI A++G G I P G +I +VL+ Sbjct: 81 RGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVKIEKVLY 125 >gi|322834683|ref|YP_004214710.1| GreA/GreB family elongation factor [Rahnella sp. Y9602] gi|321169884|gb|ADW75583.1| GreA/GreB family elongation factor [Rahnella sp. Y9602] Length = 136 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RAE++ + D + + V E G++ +V +S+ +P+ Sbjct: 36 EELDRAEILPPEQIPADVVTMNSKVRFTEGKDGEEHIRTLVYPAALKDSKEQLSVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEKT-YEILQVLW 157 AL+G G I+ P GE + E+L++L+ Sbjct: 96 AALLGLRTGGSITWEMPNGENSRIEVLELLY 126 >gi|33598202|ref|NP_885845.1| putative enzyme-regulator fusion protein [Bordetella parapertussis 12822] gi|33603098|ref|NP_890658.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica RB50] gi|33566760|emb|CAE38973.1| putative enzyme-regulator fusion protein [Bordetella parapertussis] gi|33568729|emb|CAE34487.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica RB50] Length = 320 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +AELE+ + RA V+D ++G+ + + L+ + ++ +V +AD +G +S+ Sbjct: 218 LAELEHEVERAVVVDPRQVAGNVVTMNSRA-LLNVDD-EQVEVALVYPDDADDSAGKLSV 275 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S A++G + GD + + I +VL+ Sbjct: 276 FSDFGTAILGYQEGDAVDWRISDRTRRIWIEKVLY 310 >gi|288962542|ref|YP_003452837.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510] gi|288914808|dbj|BAI76293.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510] Length = 166 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA VI+ ++ + GA V+ ++ +G ++ +V ++AD+ + VS+ +PI A Sbjct: 68 LERAAVIEEGELATGVVTMGARVAFRDEVTGQERTVTLVYPRDADLAACRVSVLTPIGAA 127 Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156 LIG G I+ GE K +L V Sbjct: 128 LIGVAEGQSITWYTREGEAKILTVLAVE 155 >gi|332163116|ref|YP_004299693.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604001|emb|CBY25499.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667346|gb|ADZ43990.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862799|emb|CBX72941.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica W22703] Length = 136 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + RAE++ + + D + + V + NS ++ +V + +S+ +P+ Sbjct: 36 EELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95 Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157 AL+G + D IS PGG++ +L++L+ Sbjct: 96 AALLGLHVNDEISWKLPGGDEARIIVLELLY 126 >gi|260770384|ref|ZP_05879317.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP 102972] gi|260615722|gb|EEX40908.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP 102972] gi|315181451|gb|ADT88364.1| nucleoside diphosphate kinase regulator [Vibrio furnissii NCTC 11218] Length = 135 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 A E + +LE+ + RA + + M + ++ +TV + +V Sbjct: 19 ALLEKMPKLSPELEKLEDELDRATINEPQDMPDNVVSMNSTVRFKFTGKDEIIQKNLVYP 78 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 E +SI +P+ AL+G G ++ PGG EKT EI++V++ Sbjct: 79 HEVKNSDD-ISIFAPVGSALLGLAAGQTLTWPMPGGAEKTIEIIEVVY 125 >gi|312963811|ref|ZP_07778282.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] gi|311281846|gb|EFQ60456.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] Length = 136 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 50 QAAKELQNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 + + + + L+ + RAE V+ + + ++V E+ SG + +V Sbjct: 17 EQLIDRMGETQPGVTALQAELDRAEAVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLV 76 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 ++A+ G +SI +P+ AL+G ++G I APGG+ E+L V Sbjct: 77 YPKDANADEGKISILAPVGSALLGLQVGQHIDWPAPGGKTLKLELLSVE 125 >gi|332527739|ref|ZP_08403780.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus JA2] gi|332112137|gb|EGJ12113.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus JA2] Length = 139 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 ++E +++ AEV+D T+ D + + V L G+ + + + Sbjct: 30 RVSEALADHARDMLDLAEVVDPKTLPADVVTMRSRVVLSR--GGELLDLTLCYPDDQPDG 87 Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT 149 VS+ SP+ AL+G +GD I P GE+ Sbjct: 88 IERVSVFSPLGMALLGARVGDSIGWRGPAGEEH 120 >gi|296164629|ref|ZP_06847196.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900048|gb|EFG79487.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 12/143 (8%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + +IP+T + + ++Q EL + + + A G + +A + +E++ L Sbjct: 1 MTRIPITPRHYRRLQDELTALRARRSVEVPDDYLDYGARGGMRPSARQRRIREIERLLGA 60 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + G +++ +G+ + + D + S Sbjct: 61 AA------------VRDDPAGERIAGPGMVLTIRYDATGETETLLLGRRGAEDADIKVYS 108 Query: 122 ISSPIARALIGKELGDIISVNAP 144 ++SP+ R + G G+ P Sbjct: 109 MASPLGRCIAGARPGEQRIYAIP 131 >gi|262173799|ref|ZP_06041476.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451] gi|261891157|gb|EEY37144.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451] Length = 171 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ M + + +TV S + +V + + VSI +P+ AL Sbjct: 75 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 133 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 134 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 161 >gi|330825392|ref|YP_004388695.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] gi|329310764|gb|AEB85179.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans K601] Length = 303 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ I RA V+D ++ D + + L + ++ +V ++AD +S+ Sbjct: 201 IFELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSV 258 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S I A++G + GD +P I +VL+ Sbjct: 259 CSGIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293 >gi|319763198|ref|YP_004127135.1| gcn5-related n-acetyltransferase [Alicycliphilus denitrificans BC] gi|317117759|gb|ADV00248.1| GCN5-related N-acetyltransferase [Alicycliphilus denitrificans BC] Length = 303 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ I RA V+D ++ D + + L + ++ +V ++AD +S+ Sbjct: 201 IFELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSV 258 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S I A++G + GD +P I +VL+ Sbjct: 259 CSGIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293 >gi|332290966|ref|YP_004429575.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] gi|332169052|gb|AEE18307.1| GreA/GreB family elongation factor [Krokinobacter diaphorus 4H-3-7-5] Length = 139 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + L N + A ++D M + I F + V++ + G +K Q+V + DV VS+ Sbjct: 35 LQRLSNELKSAHIVDDCDMPLNVIRFNSKVTVS-SDRGWEKTLQVVAPADKDVALSKVSV 93 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+ A+ G + G II+ P G + I +V+ Sbjct: 94 LTPMGSAIFGNKEGAIINWMFPSGMQELTITKVI 127 >gi|227328600|ref|ZP_03832624.1| transcription elongation factor GreA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 79 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44 + + P+T +G +K+++EL + RP II AI+EAR +GDL Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLK 43 >gi|134094680|ref|YP_001099755.1| hypothetical protein HEAR1457 [Herminiimonas arsenicoxydans] gi|133738583|emb|CAL61628.1| Putative transcription elongation factor GreA [Herminiimonas arsenicoxydans] Length = 139 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 50 QAAKELQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 + A+ L L E + E +II+ + ++ I+ D ++ +TVS NS +K++ Sbjct: 17 KLAEHLLRLGEVEINAGEELIDIISTSVILPINAPRKDCVSLYSTVSYSPYNSDEKRSIT 76 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 IV Q+A+ Q L+S +PI ALIG+++ I V P +IL V Sbjct: 77 IVCPQDANPQLALISTLTPIGLALIGRKVSSTIEVELPSNRIEKIKILDVT 127 >gi|330501242|ref|YP_004378111.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina NK-01] gi|328915528|gb|AEB56359.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina NK-01] Length = 135 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAEV+ + + + V E++SG + +V Q+A G VSI +P Sbjct: 34 LQAELDRAEVVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQDAGGD-GKVSILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G +G I PGG++ +L+V + Sbjct: 93 VGSALLGLSVGQHIDWPVPGGKQLKLTLLEVEY 125 >gi|254822488|ref|ZP_05227489.1| nucleoside diphosphate kinase regulator [Mycobacterium intracellulare ATCC 13950] Length = 159 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 10/161 (6%) Query: 1 MVDKIPVTSKGFDK--IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 M K P ++ + ++ EL +Q + ++ GD + AE + + Sbjct: 1 MSKKAP-SAADAARNNLEAELDRLRQRRDRLEAEVKNDRGMVGDHGDAAEAIQRADELVV 59 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADV 115 R+ EL+ + + S + G V+L + G+ IV + Sbjct: 60 LSDRINELDRRLRAG---PPDSDSSATLPGGTEVTLRFAD-GEVVTMHVISIVEETPVGR 115 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ ++ SP+A+AL G++ GD ++ + P GE E++ V Sbjct: 116 EAETLTARSPLAQALAGRKPGDTVTYSTPQGENQVELIAVK 156 >gi|226941111|ref|YP_002796185.1| Transcription elongation factor [Laribacter hongkongensis HLHK9] gi|226716038|gb|ACO75176.1| Transcription elongation factor [Laribacter hongkongensis HLHK9] Length = 135 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +LE + RA+V+D M + + V + +G + +Q+ ++ +S+ Sbjct: 32 RQLETELARADVVDPQDMPAGVVTMNSRVRFADA-AGATREFQLCYPKDMTGSPDQLSVL 90 Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 +P+ AL+G G I P G T +L V+W Sbjct: 91 APVGAALLGLSAGQAIDWPLPDGGHTRLTVLDVVW 125 >gi|119897107|ref|YP_932320.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp. BH72] gi|119669520|emb|CAL93433.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp. BH72] Length = 135 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + RA+V + M D I + E+ SG + + ++AD +G VS+ SP Sbjct: 33 LRAELDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDADGAAGKVSVFSP 92 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G G I P G ++L+V+W Sbjct: 93 AGSALLGLAAGQAIDWRTPEGSAIRLQVLEVVW 125 >gi|113969979|ref|YP_733772.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|114047214|ref|YP_737764.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113884663|gb|ABI38715.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|113888656|gb|ABI42707.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 135 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+++ + M G+ + + V +S D ++V ++A G +SI +P Sbjct: 34 LEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKDA-TGEGTISILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G GD I PGG I ++++ Sbjct: 93 VGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMY 125 >gi|238751385|ref|ZP_04612878.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC 43380] gi|238710443|gb|EEQ02668.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC 43380] Length = 152 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 9/142 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 E+ +P I +A L + + LNE + RAE++ Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 60 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + D + + V + S ++ +V + +S+ +P+ AL+G + Sbjct: 61 PPHAIPADVVTMNSRVRFRDLKSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHIN 120 Query: 137 DIISVNAPGGEK-TYEILQVLW 157 D I+ P G++ +L++L+ Sbjct: 121 DEINWTLPSGDEARIIVLELLY 142 >gi|146275634|ref|YP_001165794.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|145322325|gb|ABP64268.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 151 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 38 RAYGDLSENAEYQAAKELQNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96 RA D E A E + R + + A+V+D D +AFG+TV+ V Sbjct: 38 RARVDEIEAHLADAVDEEEIKKLRRELRYWSTRQSTAQVMDPPQ--ADVVAFGSTVTFV- 94 Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 +G + IVG EAD +GL++ S+P+ARAL G E G+ + GG E+L + Sbjct: 95 -LNGQNRRITIVGHDEADPTAGLIAFSAPLARALNGAEAGETVDF---GGRADAIEVLSI 150 Query: 156 L 156 Sbjct: 151 E 151 >gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104] gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104] Length = 158 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++ EL +Q ++ ++ GD + AE + + R+ EL+ + Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129 G T + G+ IV + + ++ SP+A+A Sbjct: 74 G----PPDADTSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQA 129 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L G++ GD ++ P GEK E++ V Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156 >gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp. avium ATCC 25291] Length = 158 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++ EL +Q ++ ++ GD + AE + + R+ EL+ + Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129 G T + G+ IV + + ++ SP+A+A Sbjct: 74 G----PPDADTSATLPGGTEVTLRFADGEVVTMQVISIVEETPVGREGETLTARSPLAQA 129 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L G++ GD ++ P GEK E++ V Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156 >gi|254447837|ref|ZP_05061302.1| transcription elongation factor [gamma proteobacterium HTCC5015] gi|198262617|gb|EDY86897.1| transcription elongation factor [gamma proteobacterium HTCC5015] Length = 138 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + R ++ +S D + + V ++ + + + VSI +PI Sbjct: 38 EELYRCRIVSSQEVSPDVVTMNSRVKYTRLDTQQQSTLTLCYPDQISRADDAVSILAPIG 97 Query: 128 RALIGKELGDIISVNAPGGE 147 A+IG +G II P G+ Sbjct: 98 SAIIGLSVGQIIDWPLPNGK 117 >gi|254695666|ref|ZP_05157494.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] gi|261216066|ref|ZP_05930347.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] gi|260917673|gb|EEX84534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3 str. Tulya] Length = 169 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|242241060|ref|YP_002989241.1| nucleoside diphosphate kinase regulator [Dickeya dadantii Ech703] gi|242133117|gb|ACS87419.1| GreA/GreB family elongation factor [Dickeya dadantii Ech703] Length = 136 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + +A L E + + Q LN + RA ++ + D + Sbjct: 4 PHLTINELDAERLDALLEQSAFAGTDVAQALNA--------ELDRAHIVAPVEIPPDVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + + ++ +V S +S+ +P+ AL+G +G I+ P GE Sbjct: 56 MNSRVRFRDLLTCEEHIRTLVYPATLKDSSEQISVMAPLGAALLGMHVGKTINWPLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E++++L+ Sbjct: 116 ETRIEVMELLY 126 >gi|302530802|ref|ZP_07283144.1| predicted protein [Streptomyces sp. AA4] gi|302439697|gb|EFL11513.1| predicted protein [Streptomyces sp. AA4] Length = 155 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ ++++E+ + +R + E GD ++ A+ E + ++A++ Sbjct: 12 LSEAARRQLEKEIADLRA-QREALSPQPGEQERTGDAADQADVIDRAEAAARLDRQIADV 70 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 + + G VSL + GD++ + +V D + ++ SP+ Sbjct: 71 TAKLEHG------AYDSSLLPDGTRVSLRFSD-GDEEEFTVVTLPGEDADA--ITSDSPL 121 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154 AL + G+ IS P G+ T +L+ Sbjct: 122 GLALATAKAGEEISYRTPRGQATATVLK 149 >gi|254720401|ref|ZP_05182212.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|265985419|ref|ZP_06098154.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|306839022|ref|ZP_07471843.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653] gi|264664011|gb|EEZ34272.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13] gi|306405928|gb|EFM62186.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653] Length = 170 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|148558514|ref|YP_001257600.1| nucleoside diphosphate kinase regulator [Brucella ovis ATCC 25840] gi|148369799|gb|ABQ62671.1| putative transcriptional regulator Rnk [Brucella ovis ATCC 25840] Length = 146 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + A+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 15 ELMAELDCAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 73 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 74 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 105 >gi|311108965|ref|YP_003981818.1| GNAT family acetyltransferase [Achromobacter xylosoxidans A8] gi|310763654|gb|ADP19103.1| acetyltransferase, GNAT family protein/transcription elongation factor, GreA/GreB family protein [Achromobacter xylosoxidans A8] Length = 320 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + ELE+ + RA V+ ++ + + + L ++ +V ++AD +G S+ Sbjct: 218 IVELEHELERAIVVTPQQVARNVVTMNSRALLQ--LDDEEMEVALVYPEDADSSAGKFSV 275 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S + A++G + GD I + I +VL+ Sbjct: 276 CSDVGAAILGYQEGDAIDWRISDRTRRIGIRKVLY 310 >gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 158 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++ EL +Q ++ ++ GD + AE + + R+ EL+ + Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129 G T + G+ IV + + ++ SP+A+A Sbjct: 74 G----PPDSDASATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQA 129 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L G++ GD ++ P GEK E++ V Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156 >gi|251791378|ref|YP_003006099.1| nucleoside diphosphate kinase regulator [Dickeya zeae Ech1591] gi|247539999|gb|ACT08620.1| GreA/GreB family elongation factor [Dickeya zeae Ech1591] Length = 136 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q L+E + RA+++ + D + Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPIEIPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + + ++ +V +S+ +P+ AL+G +G+ I+ P G+ Sbjct: 56 MNSRVRFRDLLTAEEHIRTLVYPAGLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGD 115 Query: 148 KT-YEILQVLW 157 KT E++++L+ Sbjct: 116 KTRIEVMELLY 126 >gi|78356295|ref|YP_387744.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218700|gb|ABB38049.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 137 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA +++ + + + V + SG ++V + + + VSI +P Sbjct: 35 LERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAP 94 Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQVLW 157 + AL+G GD I+ NA GG + + + Sbjct: 95 VGSALLGLAEGDEITWPNASGGTLQLVVDHIEY 127 >gi|307129058|ref|YP_003881074.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937] gi|306526587|gb|ADM96517.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937] Length = 136 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q L+E + RA+++ + GD + Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPVEIPGDVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + + ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLLTTEEHIRTLVYPAGLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E++++L+ Sbjct: 116 ETRIEVMELLY 126 >gi|146305312|ref|YP_001185777.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina ymp] gi|145573513|gb|ABP83045.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp] Length = 135 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RAEV+ + + + + V E++SG + +V Q+A + G VSI +P Sbjct: 34 LQAELDRAEVVGLDEVPAGLVTMNSRVHCREESSGKDYHLTLVYPQDAGGE-GTVSILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G +G I APGG++ +L V + Sbjct: 93 VGSALLGLSVGQHIDWPAPGGKQLKLTLLAVEY 125 >gi|306841739|ref|ZP_07474425.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2] gi|306288144|gb|EFM59531.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2] Length = 169 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|23500358|ref|NP_699798.1| nucleoside diphosphate kinase regulator [Brucella suis 1330] gi|62317530|ref|YP_223383.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 1 str. 9-941] gi|161620676|ref|YP_001594562.1| nucleoside diphosphate kinase regulator [Brucella canis ATCC 23365] gi|225629104|ref|ZP_03787137.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo] gi|254691027|ref|ZP_05154281.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|254698811|ref|ZP_05160639.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254699850|ref|ZP_05161678.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|254702988|ref|ZP_05164816.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|254705890|ref|ZP_05167718.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|254711118|ref|ZP_05172929.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|254712423|ref|ZP_05174234.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|254715495|ref|ZP_05177306.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|254732258|ref|ZP_05190836.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|256015391|ref|YP_003105400.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915] gi|256029499|ref|ZP_05443113.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|256157694|ref|ZP_05455612.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|256253334|ref|ZP_05458870.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|256256212|ref|ZP_05461748.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|260167410|ref|ZP_05754221.1| nucleoside diphosphate kinase regulator [Brucella sp. F5/99] gi|260568099|ref|ZP_05838568.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260756623|ref|ZP_05868971.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|260760053|ref|ZP_05872401.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|260763292|ref|ZP_05875624.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882440|ref|ZP_05894054.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|261217230|ref|ZP_05931511.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|261220450|ref|ZP_05934731.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|261313320|ref|ZP_05952517.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|261318709|ref|ZP_05957906.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|261320101|ref|ZP_05959298.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|261750323|ref|ZP_05994032.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|261753597|ref|ZP_05997306.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|261756820|ref|ZP_06000529.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|265986507|ref|ZP_06099064.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|265996199|ref|ZP_06108756.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|294853589|ref|ZP_06794261.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026] gi|297249569|ref|ZP_06933270.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5 str. B3196] gi|23463975|gb|AAN33803.1| transcriptional regulator Rnk, putative [Brucella suis 1330] gi|62197723|gb|AAX76022.1| hypothetical Rnk transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|161337487|gb|ABX63791.1| GreA/GreB family elongation factor [Brucella canis ATCC 23365] gi|225615600|gb|EEH12649.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo] gi|255998051|gb|ACU49738.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915] gi|260154764|gb|EEW89845.1| prokaryotic transcription elongation factor GreA/GreB [Brucella suis bv. 4 str. 40] gi|260670371|gb|EEX57311.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4 str. 292] gi|260673713|gb|EEX60534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676731|gb|EEX63552.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6 str. 870] gi|260871968|gb|EEX79037.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9 str. C68] gi|260919034|gb|EEX85687.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94] gi|260922319|gb|EEX88887.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1] gi|261292791|gb|EEX96287.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1] gi|261297932|gb|EEY01429.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis B2/94] gi|261302346|gb|EEY05843.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M163/99/10] gi|261736804|gb|EEY24800.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp. F5/99] gi|261740076|gb|EEY28002.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str. 513] gi|261743350|gb|EEY31276.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str. 686] gi|262550496|gb|EEZ06657.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1] gi|264658704|gb|EEZ28965.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis M292/94/1] gi|294819244|gb|EFG36244.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026] gi|297173438|gb|EFH32802.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5 str. B3196] Length = 169 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|126174724|ref|YP_001050873.1| GreA/GreB family elongation factor [Shewanella baltica OS155] gi|153001023|ref|YP_001366704.1| GreA/GreB family elongation factor [Shewanella baltica OS185] gi|160875736|ref|YP_001555052.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|217973017|ref|YP_002357768.1| GreA/GreB family elongation factor [Shewanella baltica OS223] gi|304409101|ref|ZP_07390722.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307303104|ref|ZP_07582859.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|125997929|gb|ABN62004.1| GreA/GreB family elongation factor [Shewanella baltica OS155] gi|151365641|gb|ABS08641.1| GreA/GreB family elongation factor [Shewanella baltica OS185] gi|160861258|gb|ABX49792.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|217498152|gb|ACK46345.1| GreA/GreB family elongation factor [Shewanella baltica OS223] gi|304352922|gb|EFM17319.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306913464|gb|EFN43886.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|315267925|gb|ADT94778.1| GreA/GreB family elongation factor [Shewanella baltica OS678] Length = 135 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE + RA+++ S M + + + V +S + ++V ++ + +G +SI +P Sbjct: 34 LEAELDRADIVPASQMPANVVTMNSEVKFSVSSSNETFCLRLVYPKDVNG-AGTISILAP 92 Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 + AL+G GD I PGG I ++L+ Sbjct: 93 VGSALLGLSQGDEIEWPGPGGSMVKVRIEEILY 125 >gi|16262576|ref|NP_435369.1| hypothetical protein SMa0229 [Sinorhizobium meliloti 1021] gi|14523189|gb|AAK64781.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 140 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 5/110 (4%) Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103 +Y+ L R AEL + R V+ + D + G+ V+ E G + Sbjct: 19 DYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCR 77 Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 + +V + D + G +S+ +P+ AL+G G + + G++ + I+ Sbjct: 78 TFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIV 127 >gi|226312653|ref|YP_002772547.1| hypothetical protein BBR47_30660 [Brevibacillus brevis NBRC 100599] gi|226095601|dbj|BAH44043.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 164 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 36/69 (52%) Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 G++V ++ + ++++ +V + D + +S SPI R L+ D + + +P G + Sbjct: 87 GSSVKVLFEEDQFEESFTVVYPTDIDPDNNRISFLSPIGRQLLLAAPHDSVVLESPVGRQ 146 Query: 149 TYEILQVLW 157 ++ ++ + Sbjct: 147 QVQVREISF 155 >gi|218533328|ref|YP_002424143.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218525631|gb|ACK86215.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 147 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 +A L + RA V+ + + A V + + + + E D + +S+ Sbjct: 40 VAWLAEELDRATVVPPGAVPPRVVTMHARVEYRDDVTDQVRCVTLTYPGEEDAYASGISV 99 Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +P+ AL+G G I P GG + +L+V + Sbjct: 100 LTPVGAALVGLSEGHSIRWRTPSGGLRGLTVLRVRF 135 >gi|258622671|ref|ZP_05717691.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573] gi|258585048|gb|EEW09777.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573] Length = 136 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ M + + +TV S + +V + + VSI +P+ AL Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126 >gi|254492419|ref|ZP_05105591.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxidans DMS010] gi|224462311|gb|EEF78588.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxydans DMS010] Length = 138 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 ++A LE+ + RA V++ + + + +TV +S +V ++ +S Sbjct: 32 KVATLEDELERANVVEPVAIPVNVVTMNSTVKFSVSSSQQTFCLTLVYPKDMTNDGKTIS 91 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 I +P A++G GD I P G+ ++ ++L+ Sbjct: 92 ILAPAGSAMLGLLEGDEIEWPTPDGKPMKVKVEEILY 128 >gi|297581555|ref|ZP_06943478.1| transcription elongation factor GreB [Vibrio cholerae RC385] gi|297534393|gb|EFH73231.1| transcription elongation factor GreB [Vibrio cholerae RC385] Length = 47 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 31/47 (65%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 + +T G++K++QEL + +E+RP I + +S A + GD SENA+ Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENAD 47 >gi|238764586|ref|ZP_04625532.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii ATCC 33638] gi|238697176|gb|EEP89947.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii ATCC 33638] Length = 152 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 9/141 (6%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77 E+ +P I +A L + + LNE + RAE++ Sbjct: 10 EIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEILP 61 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + + D + + V + NS ++ +V + +S+ +P+ AL+G + + Sbjct: 62 PNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVNN 121 Query: 138 IISVNAPGGEK-TYEILQVLW 157 IS PGG++ +L++L+ Sbjct: 122 EISWKLPGGDEARIIVLELLY 142 >gi|258626677|ref|ZP_05721502.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603] gi|258581028|gb|EEW05952.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603] Length = 136 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ M + + +TV S + +V + + VSI +P+ AL Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126 >gi|171913830|ref|ZP_02929300.1| nucleoside diphosphate kinase regulator protein, putative [Verrucomicrobium spinosum DSM 4136] Length = 137 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 37 ARAYGDLSENAEYQAAKELQNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLV 95 A + DL + + N + R + L + A+V + + +A T+ V Sbjct: 8 AISQSDLHTLRTFLDHDDAFNPLDARERSLLIERLQDAKVFEDESDDEPSVAGLQTLVRV 67 Query: 96 EKNSG---DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 E S D+ ++ +V EA+ + +SI SP+ A+ G+ G + +++P G + + Sbjct: 68 EDLSTSPPDQFDFTLVLPHEANFEDDQISILSPLGAAVFGRSAGTQVVMDSPTGTRRLLV 127 Query: 153 LQV 155 L V Sbjct: 128 LAV 130 >gi|271498857|ref|YP_003331882.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] gi|270342412|gb|ACZ75177.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586] Length = 136 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87 P + + +A L E + + Q L+E + RA+++ M D + Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPVEMPADVVT 55 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + + ++ +V +S+ +P+ AL+G +G+ I+ P GE Sbjct: 56 MNSRVRFRDLLTAEEHIRTLVYPASLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGE 115 Query: 148 KT-YEILQVLW 157 +T E++++L+ Sbjct: 116 ETRIEVMELLY 126 >gi|217969327|ref|YP_002354561.1| GreA/GreB family elongation factor [Thauera sp. MZ1T] gi|217506654|gb|ACK53665.1| GreA/GreB family elongation factor [Thauera sp. MZ1T] Length = 135 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + RA+V + M D I + VE+ +G + + ++A+ ++ VSI SP Sbjct: 33 LRAELERADVREPQDMPADVITMNSRARFVEEGTGREYELTLAYPKDANAEAHRVSIFSP 92 Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 AL+G G I + G E ++L+V W Sbjct: 93 AGSALLGLSAGQSIDWKSADGKEIRLKVLEVTW 125 >gi|86156938|ref|YP_463723.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85773449|gb|ABC80286.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 137 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + + + L+ + RA + + D + + V + +G + +V Sbjct: 22 QHQEGRDAAAAERLDAELDRAVRVPDGQVPADVVTMNSRVVYEDGATGRLREITLVYPTA 81 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 AD++ G +S+ +P+ AL+G G IS P G E ++ V Sbjct: 82 ADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELKVRSVQ 126 >gi|146300052|ref|YP_001194643.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] gi|146154470|gb|ABQ05324.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae UW101] Length = 143 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 + D ++ V+ + N+ +K +VG ++ V +S+ S A++G ++GD+ Sbjct: 63 KNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDL 122 Query: 139 ISVNAPGGEKTYEILQVL 156 I A G EIL+V Sbjct: 123 IEWPAKKGHLKLEILKVE 140 >gi|262403647|ref|ZP_06080205.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586] gi|262350151|gb|EEY99286.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586] Length = 135 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ M + + +TV S + +V + + VSI +P+ AL Sbjct: 39 DRATVLEPEDMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 98 LGLAVGQQLAWPMPGGALKTLEIIDIVY 125 >gi|227877958|ref|ZP_03995963.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] gi|227862461|gb|EEJ69975.1| possible transcription elongation factor GreA [Lactobacillus crispatus JV-V01] Length = 90 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + Sbjct: 20 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 78 Query: 61 GRMAELENIITR 72 R+ L + Sbjct: 79 SRLRYLGKQLKY 90 >gi|124267233|ref|YP_001021237.1| regulator of nucleoside diphosphate kinase [Methylibium petroleiphilum PM1] gi|124260008|gb|ABM95002.1| regulator of nucleoside diphosphate kinase [Methylibium petroleiphilum PM1] Length = 136 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +E ++ V+ + D + + V L + SG + + +A+ +G VS+ SP Sbjct: 34 IEPLLDACTVVPSRQVRPDVVTMYSQVLLQDLASGLRSRLTLCYPADAEPAAGFVSVLSP 93 Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + +L+G +G + + P GE ++ E++ +L+ Sbjct: 94 VGCSLLGLTVGAVARWSTPSGEARSAEVVALLF 126 >gi|262369473|ref|ZP_06062801.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] gi|262315541|gb|EEY96580.1| transcription elongation factor GreB [Acinetobacter johnsonii SH046] Length = 50 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 + +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ Sbjct: 1 MKSNLITRAGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQ 49 >gi|213582301|ref|ZP_03364127.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 62 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSE 45 + IP+T +G +K+++EL + + RP II AI+EAR +GDL Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKR 44 >gi|326315158|ref|YP_004232830.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371994|gb|ADX44263.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + + ELE+ I RA V+D ++ D + + L + G+ +V Q+AD +G Sbjct: 198 DPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL--EVDGETVEVALVYPQDADEAAGR 255 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ S + A++G GD + + +VL+ Sbjct: 256 HSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLY 293 >gi|307319085|ref|ZP_07598515.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306895192|gb|EFN25948.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] Length = 140 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103 +Y+ L R AEL + R V+ + D + G+ V+ E G + Sbjct: 19 DYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCR 77 Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 + +V + D + G +S+ +P+ AL+G G + + G++ Sbjct: 78 TFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQR 122 >gi|326318708|ref|YP_004236380.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375544|gb|ADX47813.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 139 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGLVSIS 123 +++ A+V + D + + V L + G ++ + Q+AD +G VS+ Sbjct: 35 DLLATADVTGSRAVDADVVTMNSRVELEGSGTDGADGARQVLTLCYPQDADAAAGRVSVL 94 Query: 124 SPIARALIGKELGDIISVNAPGGE 147 SP+ +L+G +GD+ + P GE Sbjct: 95 SPVGCSLLGLRVGDVAAWRTPQGE 118 >gi|120435083|ref|YP_860769.1| transcription elongation factor [Gramella forsetii KT0803] gi|117577233|emb|CAL65702.1| transcription elongation factor [Gramella forsetii KT0803] Length = 146 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%) Query: 43 LSENAEYQAAKELQNL--------NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 + E EY K++ +L + + +L + A ++ S M D I + V++ Sbjct: 7 IIEKKEYDFLKQIMSLAKYHKDTSYKASIYKLNEELKDARILTNSEMPLDVIRLNSLVTI 66 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 E ++ YQIV ++ D++ +S+ +P+ AL G GD I+ P GE +I + Sbjct: 67 -ETPYAVERTYQIVTPEKGDIRKNKISVLAPMGLALFGYAQGDNITWTFPLGESYIKIKE 125 Query: 155 VLWI 158 V I Sbjct: 126 VKQI 129 >gi|306845947|ref|ZP_07478514.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1] gi|306273582|gb|EFM55427.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1] Length = 169 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|83269510|ref|YP_418801.1| nucleoside diphosphate kinase regulator [Brucella melitensis biovar Abortus 2308] gi|189022785|ref|YP_001932526.1| nucleoside diphosphate kinase regulator [Brucella abortus S19] gi|237817078|ref|ZP_04596070.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308 A] gi|260544766|ref|ZP_05820587.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] gi|82939784|emb|CAJ12792.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis biovar Abortus 2308] gi|189021359|gb|ACD74080.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella abortus S19] gi|237787891|gb|EEP62107.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308 A] gi|260098037|gb|EEW81911.1| prokaryotic transcription elongation factor GreA/GreB [Brucella abortus NCTC 8038] Length = 169 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|262164195|ref|ZP_06031933.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223] gi|262026575|gb|EEY45242.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223] Length = 136 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 RA V++ M + + +TV S + +V + + VSI +P+ AL Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G ++ PGG KT EI+ +++ Sbjct: 99 LGLAVGQQLAWPMPGGALKTLEIIDIVY 126 >gi|213622210|ref|ZP_03374993.1| transcription elongation factor GreA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 42 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 31/42 (73%) Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++ Sbjct: 1 QNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 42 >gi|104784263|ref|YP_610761.1| nucleoside diphosphate kinase regulator [Pseudomonas entomophila L48] gi|95113250|emb|CAK17978.1| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila L48] Length = 136 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E SG + +V ++A + G VSI +PI AL+G Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREIASGKDYHLTLVYPKDAGPE-GNVSILAPIGCALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 +GD I APGG+ E+L V + Sbjct: 102 SVGDQIDWPAPGGKTLKLELLAVEY 126 >gi|24373499|ref|NP_717542.1| regulator of nucleoside diphosphate kinase [Shewanella oneidensis MR-1] gi|24347802|gb|AAN54986.1|AE015637_2 regulator of nucleoside diphosphate kinase [Shewanella oneidensis MR-1] Length = 135 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A LE + RA+++ + M + + + V +S D ++V ++A G +SI Sbjct: 31 RAALEAELDRADIVPAAQMPANVVTMNSEVKFRVSSSNDTFCLRLVYPKDA-TGEGTISI 89 Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +P+ AL+G GD I PGG I ++++ Sbjct: 90 LAPVGSALLGLSQGDQIEWPGPGGTMVKVCIEEIVY 125 >gi|293606854|ref|ZP_06689202.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814706|gb|EFF73839.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 140 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + ++ A +I I ++ D I + V L+ + GD+ + +A++ G VS+ Sbjct: 36 IDAAQELLDSAPIIPIEEVTPDIITMRSRVRLLN-DKGDEMVVTLCYPADANLAQGQVSV 94 Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 SP+ +LIG G +++ AP E + I ++L+ Sbjct: 95 MSPLGLSLIGSRTGQLVTWTAPNQTEHSASIEEILY 130 >gi|262375495|ref|ZP_06068728.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309749|gb|EEY90879.1| predicted protein [Acinetobacter lwoffii SH145] Length = 134 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E Q+ M LE+ + RAEV++ ++ + + + V L S + +V E Sbjct: 21 ENQSKLSETMIRLEDELARAEVVEPQAIASNIVTMHSRVLLTIAPSTEAVEVTLVYPHEF 80 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 + G V++ +PI A++G G I P G I +VL+ Sbjct: 81 KGEKGQVNVIAPIGAAILGLAEGQTIEWPQPDGNTMKVTIEKVLF 125 >gi|84394549|ref|ZP_00993255.1| transcription elongation factor GreA [Vibrio splendidus 12B01] gi|84374818|gb|EAP91759.1| transcription elongation factor GreA [Vibrio splendidus 12B01] Length = 51 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53 ++K+P+T +G K++ EL + RP I AI EAR GDL ENAEY AA+ Sbjct: 1 MEKVPMTVRGAQKLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAR 51 >gi|307300675|ref|ZP_07580450.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|306904209|gb|EFN34794.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 140 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AEL + R V+ + D + G+ V+ E G + + +V + D + G +S+ Sbjct: 39 AELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFSLVYPDDVDAEKGRISVL 97 Query: 124 SPIARALIGKELGDIISVNAPGGEK 148 +P+ AL+G G + + G++ Sbjct: 98 TPVGVALLGLRPGQAVEWFSRDGQR 122 >gi|117920161|ref|YP_869353.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] gi|117612493|gb|ABK47947.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] Length = 135 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 A LE + RA+++ + M G+ + + V +S D ++V ++A G +SI Sbjct: 31 RAALEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKDA-AGEGTISI 89 Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157 +P+ AL+G GD I PGG I ++++ Sbjct: 90 LAPVGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVY 125 >gi|332995744|gb|AEF05799.1| transcription elongation factor GreB [Alteromonas sp. SN2] Length = 56 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 +T KG+ K++QEL + ERP + ++ A + GD SENA++ Sbjct: 6 ITRKGYLKLKQELDHLWRVERPETTRKVTWAASLGDRSENADFH 49 >gi|325271635|ref|ZP_08138137.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51] gi|324103239|gb|EGC00584.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51] Length = 136 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 E + A+V+ + + + V E+ SG + +V ++A + G VS+ +PI Sbjct: 36 EELDRAAQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGAE-GKVSVLAPI 94 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G +G+ I APGG+ ++L+V + Sbjct: 95 GCALLGLSVGEQIDWPAPGGKTLKLKLLEVEY 126 >gi|292493343|ref|YP_003528782.1| transcription elongation factor [Nitrosococcus halophilus Nc4] gi|291581938|gb|ADE16395.1| transcription elongation factor [Nitrosococcus halophilus Nc4] Length = 129 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + I A V+ + +S + + + V ++ +G ++ ++V +EA+ +G +S+ +PI Sbjct: 28 HKIDYAIVVPVGHISSNIVTMHSRVIYLDGKTGIRREVELVYPKEANSDTGKISVLAPIG 87 Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157 AL+G +G P GE ++ + ++L+ Sbjct: 88 SALLGLSVGQATDWVFPSGEVRSLRVERILF 118 >gi|329847121|ref|ZP_08262149.1| regulator of nucleoside diphosphate kinase [Asticcacaulis biprosthecum C19] gi|328842184|gb|EGF91753.1| regulator of nucleoside diphosphate kinase [Asticcacaulis biprosthecum C19] Length = 142 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L + RA V+ ++ + G+ VS G ++ Q+V EAD+ +G +SI Sbjct: 43 QYLRRELDRAAVVATMKLNPAVVRLGSVVSYA-AGKGAERTVQLVLPGEADISTGCISIL 101 Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQV 155 +P+ ALIG G I+ G + E+ +V Sbjct: 102 TPVGAALIGLRAGQSITFTTAQGRQQSLEVFRV 134 >gi|218461137|ref|ZP_03501228.1| hypothetical protein RetlK5_17212 [Rhizobium etli Kim 5] Length = 44 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 33/44 (75%), Positives = 41/44 (93%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44 MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLS Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLS 44 >gi|94498026|ref|ZP_01304589.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58] gi|94422461|gb|EAT07499.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58] Length = 156 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 16/122 (13%) Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV 95 EA G + E+A + +EL+ + A+ GD +AFG V+ Sbjct: 45 EAVDSGPMDEDAAKKHKRELRYW--------RTRLATAQ--QQPAPDGDVVAFGTRVTYR 94 Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQ 154 SG K+ +VGD EAD G +S SSP+ARA++ E+G+ + G+ EI+ Sbjct: 95 --QSGQDKSVVLVGDDEADPHDGRISFSSPVARAMMDAEVGEKVDF---AGKADAIEIIG 149 Query: 155 VL 156 + Sbjct: 150 IE 151 >gi|167036270|ref|YP_001671501.1| nucleoside diphosphate kinase regulator [Pseudomonas putida GB-1] gi|166862758|gb|ABZ01166.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] Length = 136 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 +V+ + + + V E+ SG + +V ++A + G VSI +PI AL Sbjct: 40 RAGQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILAPIGCAL 98 Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157 +G +G+ I APGG+ ++L+V + Sbjct: 99 LGLSVGEQIDWPAPGGKTLKLKLLEVEY 126 >gi|220915658|ref|YP_002490962.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] gi|219953512|gb|ACL63896.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 138 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 + + + L+ + RA + + D +A + V + +G + +V Sbjct: 22 QHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPTA 81 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 AD++ G +S+ +P+ AL+G G IS P G E + V Sbjct: 82 ADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQ 126 >gi|299140367|ref|ZP_07033528.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|299140416|ref|ZP_07033572.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597600|gb|EFI53782.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] gi|298597642|gb|EFI53819.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8] Length = 70 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 G E D+ VS SP+ RAL+ GD + + APGG+++ +L+V + Sbjct: 1 GADEVDLDRNHVSWVSPLGRALMRSAEGDSVVLEAPGGKESLTVLEVRY 49 >gi|153011001|ref|YP_001372215.1| nucleoside diphosphate kinase regulator [Ochrobactrum anthropi ATCC 49188] gi|151562889|gb|ABS16386.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC 49188] Length = 142 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+V+ + + I G+TV N G ++ +V EAD+ G +SI +PI A Sbjct: 43 LDRAKVVPAKRLPQNVIHMGSTVEFR-SNDGQERRVTLVYPGEADIAQGKISILTPIGTA 101 Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVL 156 LIG G IS A G++ +L V Sbjct: 102 LIGLAPGQSISWTARDGKQHELNVLSVS 129 >gi|301049802|ref|ZP_07196743.1| regulator of nucleoside diphosphate kinase domain protein [Escherichia coli MS 185-1] gi|300298434|gb|EFJ54819.1| regulator of nucleoside diphosphate kinase domain protein [Escherichia coli MS 185-1] Length = 81 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 + V + G+ + +V + + +S+ +P+ AL+G +GD I PGG Sbjct: 1 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 60 Query: 148 KT-YEILQVLW 157 T E+L++ + Sbjct: 61 ATHLEVLELEY 71 >gi|163844766|ref|YP_001622421.1| nucleoside diphosphate kinase regulator [Brucella suis ATCC 23445] gi|163675489|gb|ABY39599.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 169 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + RA+V+ + + + G+TV N G ++ +V EAD+ +S + Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISTLT 96 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 PI ALIG G IS A G++ +L+V Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128 >gi|326388482|ref|ZP_08210077.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] gi|326207030|gb|EGD57852.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI-STMSGDRI 86 P ++ A A ++E ++ + +L +TR + G + Sbjct: 35 PNLVTARGLALIGAKVAELESRLLTLTEEDAIKAARRDLRYWLTRQATAQPVARPDGSHV 94 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 AFG TV+ +G + IVGD EAD +GL+S S+P++RA++ E+G+++ + G Sbjct: 95 AFGCTVTFR--MNGKTRTVTIVGDDEADPAAGLLSFSAPLSRAMMDAEVGELVDFS--GK 150 Query: 147 EKTYEILQVL 156 + EI+ + Sbjct: 151 PEAIEIVAIE 160 >gi|197120960|ref|YP_002132911.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] gi|196170809|gb|ACG71782.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K] Length = 138 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA + + D +A + V + +G + +V AD++ G +S+ +P+ A Sbjct: 39 LDRAVRVPDGQVPADVVAMNSRVVYEDGATGRLREVTLVYPTAADLREGRLSVLAPVGAA 98 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156 L+G G IS P G E + V Sbjct: 99 LLGLSTGQSISWTLPDGREVELRVRSVQ 126 >gi|153004547|ref|YP_001378872.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] gi|152028120|gb|ABS25888.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] Length = 138 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 + R AE L+ + RA I+++ D + A V+ V+ SG ++ +V ++ADV +G Sbjct: 29 DARAAEQLDAELDRAVPIEVAP--PDLVTMNARVAFVDLASGVRRELVLVYPRDADVAAG 86 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154 VS+ +PI AL+G +G+ I P G IL Sbjct: 87 RVSVLAPIGAALLGLSVGEEIDWPLPDGRVARLRILS 123 >gi|87198849|ref|YP_496106.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] gi|87134530|gb|ABD25272.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans DSM 12444] Length = 159 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L I RA+++ + D +A + V ++ +G + +V EAD+ VSI Sbjct: 59 RMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSIL 118 Query: 124 SPIARALIGKELGDIISV-NAPGGEKTYEILQVL 156 +P+ LIG G I N G ++ I QV+ Sbjct: 119 TPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVI 152 >gi|84386369|ref|ZP_00989397.1| transcription elongation factor GreB [Vibrio splendidus 12B01] gi|84378793|gb|EAP95648.1| transcription elongation factor GreB [Vibrio splendidus 12B01] Length = 56 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 + +T +G++K++ E E+RP I K ++ A + GD SENA+ Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENAD 47 >gi|149369863|ref|ZP_01889714.1| transcription elongation factor [unidentified eubacterium SCB49] gi|149356354|gb|EDM44910.1| transcription elongation factor [unidentified eubacterium SCB49] Length = 139 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 43 LSENAEYQAAKELQNLNEGRMAELE---------NIITRAEVIDISTMSGDRIAFGATVS 93 + E EY K + N G A+ E + A ++D M D I F + Sbjct: 7 IIEKKEYVFLKRILN-ISGYAADFEIQKSFKRLNEELKTAIIVDEEEMPTDVIRFNSQ-V 64 Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 L+ +G KK +QIV DV++ +SI + + AL G GD + P G+ I Sbjct: 65 LISTKNGWKKEFQIVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKNLITIE 124 Query: 154 QV 155 +V Sbjct: 125 KV 126 >gi|320326558|gb|EFW82609.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331376|gb|EFW87317.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330881316|gb|EGH15465.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RA +V+ + + + V E+ SG + ++V Q+A Sbjct: 33 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 92 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 G VS+ +P+ AL+G +G I APGG+ +L V + Sbjct: 93 AD-GTVSVLAPMGSALLGLHVGQHIDWPAPGGKTLKLTLLAVEY 135 >gi|26991899|ref|NP_747324.1| nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440] gi|148550332|ref|YP_001270434.1| nucleoside diphosphate kinase regulator [Pseudomonas putida F1] gi|24987021|gb|AAN70788.1|AE016722_9 nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440] gi|148514390|gb|ABQ81250.1| GreA/GreB family elongation factor [Pseudomonas putida F1] gi|313501200|gb|ADR62566.1| Rnk [Pseudomonas putida BIRD-1] Length = 136 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E+ SG + +V ++A + G VSI +PI AL+G Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILAPIGCALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 +G+ I APGG+ ++L+V + Sbjct: 102 SVGEQIDWPAPGGKTLKLKLLEVEY 126 >gi|290958510|ref|YP_003489692.1| hypothetical protein SCAB_40691 [Streptomyces scabiei 87.22] gi|260648036|emb|CBG71144.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1845 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 11/153 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++ ++Q+EL+ Q + + + E A S A+ + + R + L Sbjct: 1701 LSVAAHRRVQRELQRVQD----ALDQPLPEIVAVDSSSRKAQLADHDRRRQALQERRSHL 1756 Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 ++ +V+ S+++G + G V + + + Y+I A ++ +S +P Sbjct: 1757 RAVLD--QVVPDSSLTGGAMVVPGCLVGVEDPDEPGIMTYEIAM--LAGDEAERLSPDTP 1812 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 +AL+ +E+GD +S G + I V +I Sbjct: 1813 QGKALMWREVGDEVSWQTERGTRMRVI--VRYI 1843 >gi|56459737|ref|YP_155018.1| GreA/GreB family transcription elongation factor [Idiomarina loihiensis L2TR] gi|56178747|gb|AAV81469.1| Transcription elongation factor greA/greB family [Idiomarina loihiensis L2TR] Length = 151 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 ++ R+ E+ E RI GA+ L + ++ ++V + AD Sbjct: 50 ELSILLNRLEFSESKEALIE---------KRIRVGASAVLRNVKTMEQVKVRLVPPELAD 100 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + LVS SP+ L+G +GDI +V +E+L V Sbjct: 101 TDNYLVSFISPLGSTLLGLRVGDIATVIVKDISIKWEVLTV 141 >gi|120608986|ref|YP_968664.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] gi|120587450|gb|ABM30890.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1] Length = 303 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 + + ELE+ I RA V+D ++ D + + L + + +V Q+AD +G Sbjct: 198 DPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL--EVDNETVEVALVYPQDADEAAGR 255 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S+ S + A++G GD + + +VL+ Sbjct: 256 HSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLY 293 >gi|262369571|ref|ZP_06062899.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046] gi|262315639|gb|EEY96678.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046] Length = 134 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E Q M LE + RA+V+ M + + A V L S + +V + Sbjct: 21 EHQPKLTPTMQLLEEELARADVVAPQDMPANVVTMNAKVLLTIAPSTEASEITLVYPHDF 80 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + G V++ +PI A++G G I P G+ +I +V++ Sbjct: 81 KGEKGQVNVVAPIGAAILGLAEGQEIEWPQPDGQMMKVKIEKVVY 125 >gi|134100846|ref|YP_001106507.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008641|ref|ZP_06566614.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913469|emb|CAM03582.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea NRRL 2338] Length = 162 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 7/151 (4%) Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68 + ++++E R + + R + + +S+ GD +++ + + R+A LE Sbjct: 10 PEARARLEEEARSLRAQRR-HLAEELSQRDPVGDRGDDSLALEGADELAWYDDRIAALER 68 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG---DQEADVQSGLVSISSP 125 +T + + + G V + ++ G + ++VG + + ++ SP Sbjct: 69 RLTGR--GRRAGQGAEGLPPGTEVRVRFED-GTVQELRVVGIPEEVPEGEEDQTMTSDSP 125 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A AL G G ++ + P G +L V Sbjct: 126 LALALAGGSAGTDVTYSTPDGPARVHLLDVR 156 >gi|319780959|ref|YP_004140435.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166847|gb|ADV10385.1| transcription elongation factor GreA/GreB domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 140 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + + RA V ++M + + G+ V++ + G+ + +V EAD+ +S+ + Sbjct: 40 ELLSEMDRAVVTAAASMPANVVRMGSAVTIRN-DGGNIQRVTLVYPGEADISENRISVLT 98 Query: 125 PIARALIGKELGDIISVNAPGGEK---TYEILQ 154 P+ ALIG G + ++ GG + T E++ Sbjct: 99 PMGTALIGATAGQTVCWSSRGGRELSATIEVVD 131 >gi|163757146|ref|ZP_02164248.1| transcription elongation factor [Kordia algicida OT-1] gi|161322874|gb|EDP94221.1| transcription elongation factor [Kordia algicida OT-1] Length = 139 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 43 LSENAEYQAAKELQN--------LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 + E EY K + N + + +L + A ++D S M D I F + VS+ Sbjct: 7 ILEKKEYVYLKRILNISGYTGDFEVQNSLLQLNKELKNALIVDESEMPNDIIRFNSIVSI 66 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + KK QIV E D++ +SI +P+ +LIG+ D I + GE+ I Sbjct: 67 S-AENNWKKTLQIVIPTEVDIEKNKISILTPLGASLIGRSSNDNIQCTSNSGEQKIIIES 125 Query: 155 VL 156 V Sbjct: 126 VR 127 >gi|89068497|ref|ZP_01155894.1| putative nucleoside diphosphate kinase regulator [Oceanicola granulosus HTCC2516] gi|89045916|gb|EAR51976.1| putative nucleoside diphosphate kinase regulator [Oceanicola granulosus HTCC2516] Length = 150 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RP+++ L+E A + R+ + RA ++ + + + Sbjct: 17 RRPKVVICSDTLDRLESLAE-----GALQRNPDLADRLL---GELGRARIVPPARLPANV 68 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 +A G V+ ++ +G K+ V ++AD+ G +S+ +PI ALIG G I Sbjct: 69 VAIGRAVTYRDETTGLAKSVVPVFPEDADIARGRISVLTPIGVALIGLAEGAAIPWETRD 128 Query: 146 GEKTYEILQVL 156 G + +L VL Sbjct: 129 GSRR--VLSVL 137 >gi|262198442|ref|YP_003269651.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365] gi|262081789|gb|ACY17758.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365] Length = 163 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSE-------NAEYQAAKELQNLNEGRMAE 65 D+++ E+ R A EA+ +E + EY Q+ GR + Sbjct: 8 DQLRAEIHKSAHVARSAARDAAQEAKHGASSNEKRQDARVHQEYSNLARAQH---GRAEK 64 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQE------ADVQS 117 + + + S R + VE G+ + + VG D Sbjct: 65 AARELDALDAFEAKAYSSKRPIGLGALVEVEDERGEGRTLFLAPVGAGVTLTGPGGDGFL 124 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +V+ +SPI RAL+G+ LG+I+ V G K + I V Sbjct: 125 SVVTPASPIGRALLGRRLGEIVDVTVRGEPKEWTITYVE 163 >gi|270598461|ref|ZP_06221523.1| transcription elongation factor greB [Haemophilus influenzae HK1212] gi|270318308|gb|EFA29477.1| transcription elongation factor greB [Haemophilus influenzae HK1212] Length = 50 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +SI SP+ARALIGK L D + V P G T I ++ + Sbjct: 4 KNWISIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 44 >gi|88797807|ref|ZP_01113395.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297] gi|88779484|gb|EAR10671.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297] Length = 142 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + LE+ + RA V + + D + G+ V +SG ++V ++ +S+ Sbjct: 31 IDWLESELDRATVCLPNELPADAVQLGSVVRFQLSSSGQVYLRELVLPEQR-QHDEHISV 89 Query: 123 SSPIARALIGKELGDIISV-NAPGGEKTYEILQVL 156 SP+ AL+G +GD I+ ++PG T IL V Sbjct: 90 LSPVGMALLGLRVGDEIAWPSSPGQSTTVRILDVK 124 >gi|330503391|ref|YP_004380260.1| acetyltransferase [Pseudomonas mendocina NK-01] gi|328917677|gb|AEB58508.1| acetyltransferase [Pseudomonas mendocina NK-01] Length = 306 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 ELE+ + RA V+ ++ + + + L ++ +V ++AD +G S+ S Sbjct: 206 ELEHELERAIVVKPEQVARNVVTMNSRALLQ--LDDEEIEVALVYPEDADGSAGKHSVCS 263 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 I A++G + GD I + EI +VL+ Sbjct: 264 DIGAAILGYQEGDAIDWRISDRTRRIEIRKVLY 296 >gi|300023786|ref|YP_003756397.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525607|gb|ADJ24076.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans ATCC 51888] Length = 164 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 ELE + RAEV+ +++ + + + V +S ++ ++V EAD+ +S+ Sbjct: 39 QELEIEMGRAEVVQAASVPANVVRMDSIVEFR-TDSAQQRRVKLVFPGEADISQDKISVL 97 Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 +PI ALIG G I+ A G++ T ++ V Sbjct: 98 TPIGVALIGLAAGQSITWTARDGKQHTLTVIAVE 131 >gi|255531734|ref|YP_003092106.1| transcription elongation factor [Pedobacter heparinus DSM 2366] gi|255344718|gb|ACU04044.1| Transcription elongation factor [Pedobacter heparinus DSM 2366] Length = 125 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 41/92 (44%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +LE + A I + D + V + E +G + NY +V +A + +SI S Sbjct: 31 KLEQELRNARQILSKDIPADVVTVNTRVRVKELETGAEFNYTLVPPAKARNKHNTLSILS 90 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 PI A++G G + P G K Y I +V Sbjct: 91 PIGVAMVGYSQGSELKWEMPEGIKAYRIEEVT 122 >gi|126666022|ref|ZP_01737002.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17] gi|126629344|gb|EAZ99961.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17] Length = 127 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 E Q E A E ++R+ ++ ++ + + V +++S + +V E Sbjct: 21 IEKQGNLETAAALDEE-LSRSTLVPLADIPDTVVTMNTAVRFQDEDSKKEHQLTLVYPHE 79 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 G +SI +P AL+G +G+ I G + +I+ V Sbjct: 80 MGDGEGKISILAPAGSALLGLSVGESIKWPVRGRKNLHLKIISVQ 124 >gi|153006096|ref|YP_001380421.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] gi|152029669|gb|ABS27437.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5] Length = 164 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 28/158 (17%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGD-LSENAEYQAAKELQNLNE 60 D++ +T + +++ L +A E+ A D ENA A L++ Sbjct: 23 TDRLLLTEQDAARLRATL-----------ARASLESMASADARGENAVELLATALRSAI- 70 Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120 V+ + + + + + L + SG ++ +V +E G V Sbjct: 71 --------------VVPPDRIPAEVVTMRSRLVLEDVASGARREVVLVYPEEERTHEGHV 116 Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157 S+ SP+ AL+G G ++ P G ++ V + Sbjct: 117 SVLSPVGVALLGLSEGALVGWPLPSGRTAVLQVESVQY 154 >gi|188575425|ref|YP_001912354.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519877|gb|ACD57822.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 215 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G + V EADVQ G + + +P+ Sbjct: 115 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 174 Query: 128 RALIGKELGDIISVNAPGG 146 AL G +G I P G Sbjct: 175 SALGGLSVGQRIDWRTPDG 193 >gi|122879281|ref|YP_202287.6| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 143 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G + V EADVQ G + + +P+ Sbjct: 43 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG 146 AL G +G I P G Sbjct: 103 SALGGLSVGQRIDWRTPDG 121 >gi|58427865|gb|AAW76902.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 252 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G + V EADVQ G + + +P+ Sbjct: 152 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 211 Query: 128 RALIGKELGDIISVNAPGG 146 AL G +G I P G Sbjct: 212 SALGGLSVGQRIDWRTPDG 230 >gi|84625107|ref|YP_452479.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369047|dbj|BAE70205.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 143 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V+ + GD + + + ++ G + V EADVQ G + + +P+ Sbjct: 43 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 102 Query: 128 RALIGKELGDIISVNAPGG 146 AL G +G I P G Sbjct: 103 SALGGLSVGQRIDWRTPDG 121 >gi|325168694|ref|YP_004280484.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] gi|325064417|gb|ADY68106.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] Length = 137 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA+V++ D +A G+TVS + G ++ + AD++ +VS+ +PI A Sbjct: 43 LERADVVEDDQFPADAVAVGSTVSYL-TEGGARRTVTLCYPGLADIERSMVSVLTPIGAA 101 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQV 155 L+G G I G +L+V Sbjct: 102 LLGLSPGQQIEWKGRDGHSHKLTVLEV 128 >gi|296164628|ref|ZP_06847195.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900047|gb|EFG79486.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 205 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 19/147 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 V ++ + + ++Q+EL ++ ++A Y D A + + +L Sbjct: 4 VQATWLSPQAYGRLQRELAALREP-------CDADADEYCDAVRRARRLRIQRIHDLL-- 54 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 V+ G +++ ++ + + + + + S Sbjct: 55 ----------VNAVVGQDPPDDGIAEPGMVLTVRYDDTNEVETFLLGARGAEHCGVEVYS 104 Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148 + SP+ A+ G G+ S P G + Sbjct: 105 VHSPLGSAIAGARPGERRSYVPPSGVR 131 >gi|239833979|ref|ZP_04682307.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium LMG 3301] gi|239822042|gb|EEQ93611.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium LMG 3301] Length = 142 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 E EL + RA+V+ + D I G+TV N G ++ +V EAD+ Sbjct: 31 RLEEIAEELMAELDRAKVVPAKRLPQDVIHMGSTVEFR-SNDGQQRRVALVYPGEADIAQ 89 Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156 G +SI +PI ALIG G IS A G++ +L V Sbjct: 90 GKISILTPIGTALIGLAPGQSISWTARDGKQHELNVLSVS 129 >gi|91223443|ref|ZP_01258708.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01] gi|91191529|gb|EAS77793.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01] Length = 159 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 12/147 (8%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75 L + Q +AI A + E+ A E L G R+ + E + + Sbjct: 14 LEEKLQVAHSSAQRAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQDSEEELRQYRS 73 Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-------SPIAR 128 + + GA V L ++N +K + VG + ++ SP+ R Sbjct: 74 LVTRNFKNAPVGVGAYVVLADENLIEKHFF--VGPCSGGLTVQYQTLEVFVLTAKSPLGR 131 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155 AL GKE GD + V YE++ + Sbjct: 132 ALFGKEEGDEVDVKIGDKTTCYEVVTI 158 >gi|71736881|ref|YP_277097.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557434|gb|AAZ36645.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 135 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RA +V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 G VS+ +P+ AL+G +G I APGG+ +L V + Sbjct: 84 AD-GTVSVLAPMGSALLGLHVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|170719436|ref|YP_001747124.1| nucleoside diphosphate kinase regulator [Pseudomonas putida W619] gi|169757439|gb|ACA70755.1| GreA/GreB family elongation factor [Pseudomonas putida W619] Length = 136 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E+ SG + +V ++A + G VSI +PI AL+G Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGGE-GKVSILAPIGCALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 +G+ I APGG+ ++L V + Sbjct: 102 SVGEQIDWPAPGGKTLKLKLLAVEY 126 >gi|269966226|ref|ZP_06180315.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B] gi|269829141|gb|EEZ83386.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B] Length = 159 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 12/147 (8%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75 L + Q +AI A + E+ A E L G R+ + E + + Sbjct: 14 LEEKLQVAHASAQRAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQDSEEELRQYRS 73 Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIAR 128 + + GA V L ++N +K + VG + ++ SP+ R Sbjct: 74 LVTRDFKNAPVGVGAYVVLADENLLEKHFF--VGPCSGGLAVQYQAQEVFVLTAKSPLGR 131 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155 AL GKE GD + V YE++ V Sbjct: 132 ALFGKEEGDEVDVKIGDKTTCYEVVTV 158 >gi|15964020|ref|NP_384373.1| nucleoside diphosphate kinase regulator [Sinorhizobium meliloti 1021] gi|307301166|ref|ZP_07580928.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gi|307321067|ref|ZP_07600472.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|15073196|emb|CAC41704.1| Putative regulator of nucleoside diphosphate kinase [Sinorhizobium meliloti 1021] gi|306893239|gb|EFN24020.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83] gi|306903622|gb|EFN34209.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] Length = 135 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA + + D + G+TV+ + ++G K ++V EAD+++G +S+ +PI Sbjct: 43 SELDRARIAAPGKLPKDSVQMGSTVAF-DADNGFAKEVRLVYPGEADIEAGKISVLTPIG 101 Query: 128 RALIGKELGDIISVNAPGGEKT 149 ALIG +G I G+ Sbjct: 102 AALIGLSVGQSIDWVDRAGKVH 123 >gi|315127979|ref|YP_004069982.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] gi|315016493|gb|ADT69831.1| transcription elongation factor and transcript cleavage [Pseudoalteromonas sp. SM9913] Length = 47 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 + +T +G+ ++QQE E+RP + K +S A + GD SENA+ Sbjct: 1 MKTNLITREGYLQLQQEHDHLWNEKRPEVTKIVSWAASLGDRSENAD 47 >gi|237797836|ref|ZP_04586297.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020686|gb|EGI00743.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 132 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ + + L+ + RA +V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDEDAPGIQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + G VS+ +P+ AL+G ++G I APGG+ +L V + Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|264679251|ref|YP_003279158.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2] gi|262209764|gb|ACY33862.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2] Length = 160 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 19/164 (11%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK+ + + ++ ++L +Q R EA + + +Y + Sbjct: 1 MDKLLLQQQVLKRLAEDLVQVEQAARVA-----HEAATHEENIAENKYDTLGLEASYLAA 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R + + + + I GA + LV+ + ++ + +G +++ Sbjct: 56 GQARRAEAIRQAMANWRQFRPQPYNASKGIQLGALICLVDSDDKQQQIF--LGPDGGNMK 113 Query: 117 -------SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 ++S +P+ RA++GK GD +S+ + +E+L Sbjct: 114 LFNGAELIQVISSKAPLGRAMLGKCEGDEVSIQVAPVRQQFEVL 157 >gi|260466738|ref|ZP_05812924.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] gi|259029468|gb|EEW30758.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] Length = 140 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL + + RA + D + M D + G+TV++ GD + +V EAD+ +S+ + Sbjct: 40 ELLSEMDRAVIADAAAMPADVVRMGSTVAVS-SEGGDIQRITLVYPGEADIAENRISVLT 98 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155 P+ ALIG +G ++ ++ G E + I V Sbjct: 99 PMGTALIGAAIGQVVCWSSRDGRELSVTIEAV 130 >gi|257482604|ref|ZP_05636645.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330892779|gb|EGH25440.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. mori str. 301020] gi|330984809|gb|EGH82912.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012755|gb|EGH92811.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 135 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + +P+ AL+G ++G I APGG+ +L V + Sbjct: 90 VLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|329888405|ref|ZP_08267003.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta ATCC 11568] gi|328846961|gb|EGF96523.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta ATCC 11568] Length = 136 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RA+V + M + + + V+ +S + + Q+V ++AD+ +G VSI S Sbjct: 38 LQQELDRAKVCEPKAMPKNVVTLNRWLQYVDDHSPEVRRVQLVLPKDADIDAGRVSILSY 97 Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQVL 156 + LIG + G I+ + G + +++V Sbjct: 98 VGAGLIGLKEGQSINWPDTSGAARKLTLVKVE 129 >gi|148557737|ref|YP_001265319.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148502927|gb|ABQ71181.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 157 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 +E + + E+ GD AFG + + +G +K IVGD Sbjct: 57 TEEQLKSLKRDLRYWTTRHATMEI--QPPADGDEAAFGTR--VRYRLNGQEKAVAIVGDD 112 Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156 EAD +GLVS SSP+ARALIG GD G+ E+L V Sbjct: 113 EADPAAGLVSFSSPLARALIGAGEGDFADF---AGKADAIEVLGVE 155 >gi|255534407|ref|YP_003094778.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium 3519-10] gi|255340603|gb|ACU06716.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium 3519-10] Length = 127 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 3/116 (2%) Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 G ++ K++ E R+ + A+ + + D + V + + Sbjct: 10 GIYDAIKDHVRRKKVTAEEESRIL---AELRGAKQVRRKELPEDVVTVDRKVRIKDHTQN 66 Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ Y VG EA + SI S +A A +G ++GD+I GGE+ EIL+V Sbjct: 67 KEQEYIFVGIAEAKPKRNKHSILSEMALATVGYKVGDVIEWPFEGGERKIEILKVE 122 >gi|13473408|ref|NP_104975.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti MAFF303099] gi|14024157|dbj|BAB50761.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti MAFF303099] Length = 140 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA V D + M D + G+ V++ G + +V EAD+ +S+ +P+ A Sbjct: 45 MDRAVVTDAAAMPADVVRMGSAVTVR-GEGGATQRIMLVYPGEADIAENRISVLTPMGTA 103 Query: 130 LIGKELGDIISVNAPGG-EKTYEILQV 155 LIG +G + ++ GG E + + V Sbjct: 104 LIGASIGQAVCWSSRGGRELSVTVEAV 130 >gi|298292903|ref|YP_003694842.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] gi|296929414|gb|ADH90223.1| GreA/GreB family elongation factor [Starkeya novella DSM 506] Length = 142 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 EL+ + RA+V+ +T+ + G+TV + ++ +V EAD+ G VSI + Sbjct: 40 ELQIEMERAQVLSTATIPEGVVQMGSTVEYH-SDVEQRRRITLVYPGEADIAEGRVSILT 98 Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 PI ALIG G I + G E +L+V Sbjct: 99 PIGAALIGLSAGQSIRWVSRDGREHVLTVLKVE 131 >gi|297624445|ref|YP_003705879.1| transcription elongation factor GreA/GreB domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165625|gb|ADI15336.1| transcription elongation factor GreA/GreB domain protein [Truepera radiovictrix DSM 17093] Length = 1819 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 82 SGDRIAFGATVSLVEKNS-GDKKNYQI-VGDQEADVQSGLVSISSPIARALIGKELGDII 139 G + G V + N G QI VG + + G+++ +P+ARAL+GK + ++ Sbjct: 1742 QGAVVRVGDFVRYCDANDLGQVFTVQITVGTSK--PEMGIINYQTPVARALLGKRVNEVA 1799 Query: 140 SVNAPGGEKTYEILQV 155 +++ P G +L++ Sbjct: 1800 TIHLPLGTTEVIVLEI 1815 >gi|330962357|gb|EGH62617.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 135 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E+ SG + +V Q+A V+ G VS+ +P+ AL+G Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLTLVYPQDAGVE-GTVSVLAPMGSALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 ++G I APGG+ +L V + Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|121583336|ref|YP_973772.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans CJ2] gi|120596594|gb|ABM40030.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans CJ2] Length = 132 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%) Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 AELE+ ++ + D I + V +V+ S ++ I +A+ G +S+ Sbjct: 28 AELESSFEFPHLVASRDIPADVITMYSQVEIVDPLSHRRQKLTICYPGDAEPALGFISVL 87 Query: 124 SPIARALIGKELGDIISVNAPGGE 147 SP+ +L+G +G P G+ Sbjct: 88 SPVGTSLLGLSVGATAHWRTPTGD 111 >gi|299534164|ref|ZP_07047515.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] gi|298717811|gb|EFI58817.1| GreA/GreB family elongation factor [Comamonas testosteroni S44] Length = 305 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E + +LE+ I RA V+D + + + + L +V ++AD +G Sbjct: 200 ESQAVDLEHEIERAVVVDARQVQRNVVTMNSKALLR--LDEMAVEVALVYPEDADDSAGR 257 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S+ S + A++G GD I I +VL+ Sbjct: 258 LSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295 >gi|154246864|ref|YP_001417822.1| nucleoside diphosphate kinase regulator [Xanthobacter autotrophicus Py2] gi|154160949|gb|ABS68165.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2] Length = 143 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA ++ I + + G+ V+ + G+ + +V ++AD+ + VS+ +PI A Sbjct: 50 LDRARLVPIGRVPATAVQMGSKVTY--EAGGNARTVTLVYPEDADIAAARVSVMTPIGAA 107 Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVL 156 LIG G I A G + ++++V Sbjct: 108 LIGLSKGQSICWTARDGRRHELKVIEVQ 135 >gi|150398653|ref|YP_001329120.1| nucleoside diphosphate kinase regulator [Sinorhizobium medicae WSM419] gi|150030168|gb|ABR62285.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419] Length = 135 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA + + D + G+TV+ ++G K ++V EAD+++G +S+ +PI A Sbjct: 45 LDRARIAAPGKLPKDSVQMGSTVAFH-ADNGFAKEVRLVYPGEADIEAGKISVLTPIGAA 103 Query: 130 LIGKELGDIISVNAPGGEKT 149 LIG +G I + G+ Sbjct: 104 LIGLSVGQSIDWSDRAGKIH 123 >gi|319791556|ref|YP_004153196.1| transcription elongation factor grea/greb domain-containing protein [Variovorax paradoxus EPS] gi|315594019|gb|ADU35085.1| transcription elongation factor GreA/GreB domain-containing protein [Variovorax paradoxus EPS] Length = 160 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK + + +++ ++L +Q R A E + + +AA Sbjct: 1 MDKFLLQQQVLERLAEDLLQAEQAVRAAHETATHEENVAENKYDTLGLEAAYLATGQ-AR 59 Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--- 117 R + + + I GA V L++ + ++ + +G + Sbjct: 60 RAEAIRQAMANWRQFRPRPYDASKGIQLGALVCLIDSDDKQQQLF--LGPNGGSMTLVSG 117 Query: 118 ----GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 ++S +P+ RA++GK GD +S+ + +E+L+V Sbjct: 118 AQFVQVISSDAPLGRAVLGKCEGDEVSIQVALTRRQFEVLRV 159 >gi|300776138|ref|ZP_07085997.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC 35910] gi|300505271|gb|EFK36410.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC 35910] Length = 126 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109 + + E E + +V+ + D + V+L + + Y V Sbjct: 17 DTLRRKKVSIEEEKRLTEELRKAKQVLRRD-LPADIVTVDRKVTLKDHTLNFEHEYIFVP 75 Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + ++ SI S IA A++G ++GD+IS GE+ EIL+V Sbjct: 76 SVKEKLKKNKYSILSDIALAVVGYKVGDVISWPFRDGERKIEILKVE 122 >gi|331017912|gb|EGH97968.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 135 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E+ SG + ++V Q+A + G VS+ +P+ AL+G Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLAPMGSALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 ++G I APGG+ +L V + Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|115373796|ref|ZP_01461089.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|310817548|ref|YP_003949906.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1] gi|115369195|gb|EAU68137.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1] gi|309390620|gb|ADO68079.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1] Length = 171 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 13/132 (9%) Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSL 94 E+ D EY + Q+ R+ E I+ E GD +A GA V + Sbjct: 40 ESEKKEDGRAAIEYGSLATGQSARARRLHEELGILAAFSEAGAPRFRRGDPVALGAVVDV 99 Query: 95 VEKNSG--DKKNYQ---------IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 ++ D++ + + G D +++ +SP+ RAL+G+ GD + V Sbjct: 100 RTEDEQGYDERTFFVLPVGAGTELTGP-GGDGFLSVITPASPVGRALLGRRAGDSVDVTL 158 Query: 144 PGGEKTYEILQV 155 G + + +L+V Sbjct: 159 GGDVREWTVLEV 170 >gi|152982035|ref|YP_001353580.1| GreA family transcription elongation factor [Janthinobacterium sp. Marseille] gi|151282112|gb|ABR90522.1| transcription elongation factor, greA family [Janthinobacterium sp. Marseille] Length = 139 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 52 AKELQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 A+ L + E + E +II+ + ++ + + +TVS ++ + + IV Sbjct: 19 AEHLLRMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYSPVDTEEVRKLTIV 78 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 Q+A+ Q L+S +PI ALIG++ + V P + +IL V Sbjct: 79 CPQDANPQLALISALTPIGLALIGRKALTTVEVALPSKRVEKLKILDVT 127 >gi|28867461|ref|NP_790080.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213970732|ref|ZP_03398857.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato T1] gi|301382620|ref|ZP_07231038.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato Max13] gi|302061760|ref|ZP_07253301.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato K40] gi|302133639|ref|ZP_07259629.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850695|gb|AAO53775.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000] gi|213924566|gb|EEB58136.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato T1] Length = 135 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133 +V+ + + + V E+ SG + ++V Q+A + G VS+ +P+ AL+G Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLAPMGSALLGL 101 Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157 ++G I APGG+ +L V + Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|264677460|ref|YP_003277366.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] gi|262207972|gb|ACY32070.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2] Length = 305 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E + +LE+ I RA V+D + G+ + + L +V ++AD +G Sbjct: 200 ESQAVDLEHEIERAAVVDARQVQGNVVTMNSKALLR--LDEVAVEVALVYPEDADDSAGR 257 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +S+ S + A++G GD I I +VL+ Sbjct: 258 LSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295 >gi|260896883|ref|ZP_05905379.1| transcription elongation factor GreA [Vibrio parahaemolyticus Peru-466] gi|308086278|gb|EFO35973.1| transcription elongation factor GreA [Vibrio parahaemolyticus Peru-466] Length = 38 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/38 (55%), Positives = 28/38 (73%) Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 S+SSPIAR LIGK GD +++ PGG K +EI +V +I Sbjct: 1 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 38 >gi|302189437|ref|ZP_07266110.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. syringae 642] gi|330941155|gb|EGH44034.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 135 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ + + L+ + RA +V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDEDAPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 G VS+ +P+ AL+G ++G I APGG+ +L V + Sbjct: 84 AD-GTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|312883771|ref|ZP_07743490.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368520|gb|EFP96053.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC BAA-2122] Length = 162 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%) Query: 14 KIQQE----LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAE 65 ++++E L+ + + +A++ A + E+ Y R+ E Sbjct: 9 QLKEEIVSMLQQQHNITLDAVNQAVASATDKETIPEHK-YDTLALEAAYLAHGQAMRVTE 67 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------- 118 E I + +D+ + D++ G V+L ++N+ ++ V ++ Sbjct: 68 SEERIRQFLALDL-PQNPDQVTLGCLVALRDENA--SLHWFFVSPVSGGLKVNWQGLSII 124 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 LV+ SP+ +AL GKELGD + K Y++ + Sbjct: 125 LVTFQSPLGKALRGKELGDDVEYLVGNETKYYQVETI 161 >gi|327403126|ref|YP_004343964.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823] gi|327318634|gb|AEA43126.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823] Length = 130 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112 E +L ++ L + AE+ + ++ V G Q+V + Sbjct: 24 SESTSLMNSCISRLREELKTAELFTNGADFPQDVIRLNSIVDVNTPFG-IMKIQLVLPEN 82 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 ++ + +SI +P+ ALIG D I P G EIL+V Sbjct: 83 SNSEQKRISILTPMGSALIGYAEKDKIMWEFPNGTHEVEILKVSH 127 >gi|330952175|gb|EGH52435.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae Cit 7] Length = 135 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + +P+ AL+G ++G I APGG+ +L V + Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|167647566|ref|YP_001685229.1| GreA/GreB family elongation factor [Caulobacter sp. K31] gi|167349996|gb|ABZ72731.1| GreA/GreB family elongation factor [Caulobacter sp. K31] Length = 141 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA +++ + G+ + + ++G ++ ++ ++A + +S+ SP+ Sbjct: 51 HEMARALIVEPGQAPLPFVRIGSRIDYRDLSNGQTRSVRLSLPRDASIDDNRISVLSPVG 110 Query: 128 RALIGKELGDIISVN-APGGEKTYEILQV 155 AL+G G A G + +++ V Sbjct: 111 AALVGMTAGQAFHWTDAEGRPRGVQVIAV 139 >gi|291333579|gb|ADD93273.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S08-C92] Length = 437 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 12 FDKIQQELRWRQ--QEERPRIIKAISEARAYGDLSE-------NAEYQAAKELQNLNEGR 62 +K++++L + Q + +A E NAE Q+ + E + Sbjct: 289 HEKLKEDLEFLQGTTIGSEEDTERKIKAMEIEIPKEKEMADEMNAEAQSLSDSNKELEEK 348 Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 + + I + + + + S + G ++++ + +++V ++A++ G + + Sbjct: 349 IKDAR-IESLNKPVAAGSSSSTGASIGTSLTVKNLTKETEHTFELVNQEDANIPQGKIPL 407 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 S+PI ++L G + GD + V G T+++L+V Sbjct: 408 SNPIGKSLEGSKEGDEVKV----GPTTFKVLKV 436 >gi|66043448|ref|YP_233289.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. syringae B728a] gi|63254155|gb|AAY35251.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. syringae B728a] gi|330970496|gb|EGH70562.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aceris str. M302273PT] gi|330983174|gb|EGH81277.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 135 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + +P+ AL+G ++G I APGG+ +L V + Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|254562838|ref|YP_003069933.1| transcription elongation factor GreA-related [Methylobacterium extorquens DM4] gi|254270116|emb|CAX26106.1| putative transcription elongation factor GreA-related [Methylobacterium extorquens DM4] Length = 75 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+ V + ++G ++ +V EAD++ G VSI +PI ALIG G I GE Sbjct: 1 MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 60 Query: 148 -KTYEILQVL 156 + +L V Sbjct: 61 TRRLTVLAVR 70 >gi|254507861|ref|ZP_05119991.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16] gi|219549234|gb|EED26229.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16] Length = 164 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 13/150 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 L + + + + +A+ A + E+ A E L G R+ E E I Sbjct: 18 DSLEQKWRVAQSSMQRAVESATDEETVPEHKYDTLALEASYLAHGQAVRVQECEREIRMF 77 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126 +++ S + G+ ++V+ + D+ Y V ++ L V+ SP+ Sbjct: 78 RELELPK-SPQHVVLGSLAAVVDMS--DRTQYFFVAPCAGGLKVELDGTEVLVVTFQSPL 134 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 AL GK +GD + YEI + Sbjct: 135 GLALKGKSVGDELEYQVSSTTFCYEIETIS 164 >gi|262393491|ref|YP_003285345.1| transcription elongation factor [Vibrio sp. Ex25] gi|262337085|gb|ACY50880.1| transcription elongation factor [Vibrio sp. Ex25] Length = 159 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 12/149 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q L + Q AI A + E+ A E L G R+ E E+ + + Sbjct: 12 QHLEEKLQVAHASAQLAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQESEDELRQY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLVSISSPI 126 + G + GA V L ++N +K + VG + + +++ SP+ Sbjct: 72 RALVTRDFKGAPVGVGAYVVLADENLLEKHFF--VGPCSGGLTVKYQAQEVFVLTAKSPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL GKE GD I V YE++ V Sbjct: 130 GRALFGKEEGDEIDVKIGEKTTCYEVVTV 158 >gi|83644422|ref|YP_432857.1| transcription elongation factor [Hahella chejuensis KCTC 2396] gi|83632465|gb|ABC28432.1| Transcription elongation factor [Hahella chejuensis KCTC 2396] Length = 160 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + K + K+Q +L + A + A ++EN E L EG Sbjct: 1 MRKEKIHQLIIAKLQDDL----AVAQQAANTAHATATHEESVAENKYDTFGLEASYLAEG 56 Query: 62 ---RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 R+ E E + + D +A A V+L ++ +++ + VG + A + Sbjct: 57 QSRRVREFEAALASYQNTPPKHFTDQDEVAVFALVTLEAEDGSERRLF--VGPEAAGFKF 114 Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 L ++ SPI L+GK +GD++++ A GEK +EI+++ Sbjct: 115 LLDEQEVLVITRRSPIGMKLMGKMVGDVVALVAGNGEKEFEIVEIE 160 >gi|332561347|ref|ZP_08415662.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides WS8N] gi|332274146|gb|EGJ19463.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides WS8N] Length = 146 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 +T A ++ + + D + G+ V + + + ++AD+ VSI +P+ Sbjct: 41 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100 Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G GD GE ++ +LQV Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128 >gi|125654694|ref|YP_001033887.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides 2.4.1] gi|77386354|gb|ABA81782.1| putative regulator of nucleoside diphosphate kinase protein [Rhodobacter sphaeroides 2.4.1] Length = 146 Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 +T A ++ + + D + G+ V + + + ++AD+ VSI +P+ Sbjct: 41 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100 Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G GD GE ++ +LQV Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128 >gi|330964215|gb|EGH64475.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 135 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCCEEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + G VS+ +P+ ALIG ++G I APGG+ +L V + Sbjct: 84 AE-GTVSVLAPMGSALIGLQVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|330878495|gb|EGH12644.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 135 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 + G VS+ +P+ AL+G ++G I APGG+ +L V + Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126 >gi|221634522|ref|YP_002523210.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter sphaeroides KD131] gi|221163395|gb|ACM04357.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter sphaeroides KD131] Length = 133 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 +T A ++ + + D + G+ V + + + ++AD+ VSI +P+ Sbjct: 28 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 87 Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G GD GE ++ +LQV Sbjct: 88 ALLGLSAGDRFQWQTRAGERRSLTVLQV 115 >gi|74316084|ref|YP_313824.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] gi|74055579|gb|AAZ96019.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 25259] Length = 138 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L + + RAE++ M D + + + V + +G + +V ++ + +++P Sbjct: 36 LRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTP 95 Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 A++G +G I AP G+K I+ + + Sbjct: 96 AGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAY 128 >gi|59711263|ref|YP_204039.1| transcription elongation factor [Vibrio fischeri ES114] gi|59479364|gb|AAW85151.1| transcription elongation factor [Vibrio fischeri ES114] Length = 161 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K + D I ELR Q +AI +A ++ + E L Sbjct: 1 MINKEAL----LDSIIDELRKIHQLALDATQRAIDQATDKEAIARSKYETFGLEASYLAH 56 Query: 61 G---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGD 110 G R++E E +I+ ++ + I GA V+LV ++ + + I V Sbjct: 57 GQAVRVSECEADILAYRKLPRLVYTENSSINQGALVTLVNQDD-VESTFFIGPSAGGVKV 115 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 D+ L++ S+P+ +A+IG+++GD +N G ++ YEI+ V Sbjct: 116 AHQDLVFSLITPSAPLGKAMIGQQVGDEFELNLAGKKQQYEIIDVQ 161 >gi|327481647|gb|AEA84957.1| transcription elongation factor [Pseudomonas stutzeri DSM 4166] Length = 158 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 15/154 (9%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 +I L ++ + + A +EN Y R+ E+E Sbjct: 8 QQIIATLEADREVAKAVLAATHEAATHAESKAENK-YDTRGLEAAYLADGQRRRLHEIET 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VS 121 + + S R+ GA L+ + + + +G A ++ ++ Sbjct: 67 ALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDGREILVIT 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + L+G+E+GD + + G + YE+LQ+ Sbjct: 124 ARSPLGQGLLGREVGDEVELRVHGQLQRYEVLQI 157 >gi|126464873|ref|YP_001041849.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides ATCC 17029] gi|126106688|gb|ABN79213.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC 17029] Length = 137 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 +T A ++ + +S D + G+ V + + + ++AD+ VSI +P+ Sbjct: 41 KLTSARLLAPARLSSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100 Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G GD GE ++ +LQV Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128 >gi|304412090|ref|ZP_07393700.1| transcription elongation factor GreA/GreB domain-containing protein [Shewanella baltica OS183] gi|307305985|ref|ZP_07585731.1| transcription elongation factor GreA/GreB domain protein [Shewanella baltica BA175] gi|304349640|gb|EFM14048.1| transcription elongation factor GreA/GreB domain-containing protein [Shewanella baltica OS183] gi|306911478|gb|EFN41904.1| transcription elongation factor GreA/GreB domain protein [Shewanella baltica BA175] Length = 49 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49 + +T +G+ + +EL++ +E RP+I + EA A GD SENA++ Sbjct: 1 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADF 48 >gi|332186877|ref|ZP_08388619.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Sphingomonas sp. S17] gi|332013210|gb|EGI55273.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain protein [Sphingomonas sp. S17] Length = 154 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + D + G+ V++ +G K IVG EAD ++ ++P+ARAL+G G+ Sbjct: 77 APAPAEDEVGIGSVVTIR--LNGQTKALTIVGHDEADPSQDRIAYAAPLARALMGAMAGE 134 Query: 138 IISVNAPGGEKT-YEILQVL 156 +++ GG+ EIL V Sbjct: 135 MVAF---GGKADAVEILDVS 151 >gi|146280271|ref|YP_001170427.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides ATCC 17025] gi|145558512|gb|ABP73122.1| hypothetical protein Rsph17025_4275 [Rhodobacter sphaeroides ATCC 17025] Length = 146 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 N +T A ++ + + D + G+ V + + + ++AD+ VSI +P+ Sbjct: 40 NKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVG 99 Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQV 155 AL+G GD GE ++ +LQV Sbjct: 100 VALLGLSAGDRFQWQTRAGERRSLTVLQV 128 >gi|256059194|ref|ZP_05449400.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33] Length = 109 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147 G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A G+ Sbjct: 1 MGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGK 59 Query: 148 K-TYEILQV 155 + +L+V Sbjct: 60 QHELNVLKV 68 >gi|114049385|ref|YP_739935.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113890827|gb|ABI44878.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 56 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y+ Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYR 49 >gi|261323143|ref|ZP_05962340.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33] gi|261299123|gb|EEY02620.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33] Length = 111 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A Sbjct: 1 MQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARD 59 Query: 146 GEK-TYEILQV 155 G++ +L+V Sbjct: 60 GKQHELNVLKV 70 >gi|269960572|ref|ZP_06174944.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834649|gb|EEZ88736.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 159 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 12/149 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q+L + Q +AI A + E+ A E L G R+ E E + + Sbjct: 12 QQLEDKLQVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126 + + RIA GA V LV++N +K + +G + ++ SP+ Sbjct: 72 RTLVLRDFVDARIAVGAYVELVDENDVEKAFF--IGPCSGGLTVEWQGKEVFVLTPKSPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GKE G+ + + YE++ + Sbjct: 130 GRALMGKEEGEEVEMKIGDKTTCYEVVTI 158 >gi|298209251|ref|YP_003717430.1| GreA/GreB family elongation factor [Croceibacter atlanticus HTCC2559] gi|83849178|gb|EAP87047.1| GreA/GreB family elongation factor [Croceibacter atlanticus HTCC2559] Length = 139 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 9/122 (7%) Query: 43 LSENAEYQAAKELQNL--------NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 + E EY K + N+ + + L + + A+++D + D I F + + L Sbjct: 7 IIEKKEYVLLKRILNISSYAKDFDTQRAIKCLNDNLKNAQILDEEDVPTDVIRFNSNI-L 65 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 VE N KK+ +V +++ +S+ +P+ L G GD++ G + +I + Sbjct: 66 VEFNENLKKHLHLVIPASKNIKEDKISVITPLGALLFGCAEGDVLHEKLGSGIQHLQIKK 125 Query: 155 VL 156 V+ Sbjct: 126 VI 127 >gi|260564705|ref|ZP_05835190.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|265989928|ref|ZP_06102485.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265992967|ref|ZP_06105524.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 3 str. Ether] gi|260152348|gb|EEW87441.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor GreA/GreB [Brucella melitensis bv. 1 str. 16M] gi|262763837|gb|EEZ09869.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 3 str. Ether] gi|263000597|gb|EEZ13287.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator [Brucella melitensis bv. 1 str. Rev.1] Length = 113 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146 A G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A G Sbjct: 4 ADGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDG 62 Query: 147 EK-TYEILQV 155 ++ +L+V Sbjct: 63 KQHELNVLKV 72 >gi|323491713|ref|ZP_08096891.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546] gi|323314075|gb|EGA67161.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546] Length = 164 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 13/148 (8%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75 L + Q + + +AI A + E+ A E L G R+ E E I+ + Sbjct: 20 LEQKWQIAQSSVQRAIESATDEETVPEHKYDTLALEASYLAHGQAKRLQECEQEISLFKE 79 Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIAR 128 + + + G VSL++ N +++ + + ++ LV+ SP+ R Sbjct: 80 L-VMPQEPHCVVLGCLVSLLDVN--EQRKWFFISPCAGGLKVAASEATVMLVTFDSPLGR 136 Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVL 156 AL K +GD + E YEI + Sbjct: 137 ALKSKNVGDEVIYRVAEAEHCYEIETIS 164 >gi|328474348|gb|EGF45153.1| hypothetical protein VP10329_16615 [Vibrio parahaemolyticus 10329] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 12/149 (8%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74 +L + + +AI A + E+ A E L G R+ E E+ + + Sbjct: 39 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 98 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127 + I + I GA V LV++N+ +K+ + +G D + +++ SP+ Sbjct: 99 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 156 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156 RAL+GKE G+ + YE++ V Sbjct: 157 RALLGKEEGEEFEMKIGDKTTCYEVVTVS 185 >gi|298489352|ref|ZP_07007366.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156143|gb|EFH97249.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 135 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGDIISVNAPG-GEKTYEILQVLW 157 + +P+ AL+G ++G I APG +L V + Sbjct: 90 VLAPMGSALLGLQVGQHIDWPAPGCKTLKLTLLAVEY 126 >gi|28899114|ref|NP_798719.1| hypothetical protein VP2341 [Vibrio parahaemolyticus RIMD 2210633] gi|28807338|dbj|BAC60603.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 185 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74 +L + + +AI A + E+ A E L G R+ E E+ + + Sbjct: 39 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 98 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127 + I + I GA V LV++N+ +K+ + +G D + +++ SP+ Sbjct: 99 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 156 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GKE G+ + YE++ V Sbjct: 157 RALLGKEEGEEFEMKIGDKTTCYEVVTV 184 >gi|300088754|ref|YP_003759276.1| transcription elongation factor GreA/GreB domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528487|gb|ADJ26955.1| transcription elongation factor GreA/GreB domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1597 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + TV V+ + + ++ ++++ + G ++I++PIARALIG LG + P Sbjct: 1523 VEVEDTVVYVDIENPQVEKQALITCEKSNPEWGAININTPIARALIGATLGSTVEAKLPK 1582 Query: 146 GEKTYEILQVL 156 G + I + Sbjct: 1583 GTVSLLIKDIK 1593 >gi|254670249|emb|CBA05481.1| Transcription elongation factor [Neisseria meningitidis alpha153] Length = 40 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 30/40 (75%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41 + KIP+T +G + ++QEL+ + RP +I+AI+EAR++G Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHG 40 >gi|108762537|ref|YP_628480.1| GreA/GreB domain-containing protein [Myxococcus xanthus DK 1622] gi|108466417|gb|ABF91602.1| GreA/GreB domain protein [Myxococcus xanthus DK 1622] Length = 171 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSL 94 E+ D E+ + Q R+ E +T+ ++ +A GA V + Sbjct: 40 ESEKKEDGRAALEFGSLATGQAQRARRVQEELQALTKFGQAEVPRFPRQGPVALGAIVDV 99 Query: 95 VEKNSG--DKKNYQ---------IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 ++ ++ + + G D +++ +SP+ RAL+G++ GD + V Sbjct: 100 STEDEEGFSERTFFVLPAGAGTELTGP-GGDGFLSVITPASPVGRALMGRKAGDTVEVML 158 Query: 144 PGGEKTYEILQV 155 G + + +L+V Sbjct: 159 AGEVREWTVLEV 170 >gi|148555405|ref|YP_001262987.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] gi|148500595|gb|ABQ68849.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1] Length = 166 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85 RP I SEA +++ AE + + + L E I RA + + + D Sbjct: 37 RRPAIHMIDSEAETLANMAVAAEERIPQVSELLLE--------EIDRATLYKAARIPADV 88 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 + + V V++ +G + Q+V ++AD+ +G VSI + + LIG G I Sbjct: 89 VTMHSHVEFVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWPGRD 148 Query: 146 G-EKTYEILQVL 156 G + I +V Sbjct: 149 GHRRLLTITRVS 160 >gi|330447801|ref|ZP_08311449.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491992|dbj|GAA05946.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 160 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K + D IQ++L Q ++A + A +++EN A E L G Sbjct: 1 MNKQML----LDDIQEKLTLTLQAATEAAMRAYNTATDDENVAENQYDTLALEASYLAHG 56 Query: 62 RMAELE----NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 + +E +++ ++ S D + G V+LV++ + + +G V Sbjct: 57 QAQRVEECKADLMAYQKLQASLPQSFDSVLLGHIVTLVDEEDNTRLVF--LGPTAGGVVL 114 Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 L V+ +SP ALIG+E+G+ + V+ YE+L + Sbjct: 115 TLEGKPVTIVTPTSPFGDALIGREIGEEVDVHIGNSVTWYEVLAI 159 >gi|330900741|gb|EGH32160.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 123 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147 + +P+ AL+G ++G I APGG+ Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGK 115 >gi|289208813|ref|YP_003460879.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] gi|288944444|gb|ADC72143.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix] Length = 137 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 D + G I G V L++ + + ++ + A + G +SI SP+ L+G Sbjct: 50 DTTPRCGQVIQTGCCVRLLDLQTEETYLVELCEPEHAQPERGKISILSPLGSRLLGLRKN 109 Query: 137 DIISVNAPGGEKTYEILQVL 156 + + + ++++L Sbjct: 110 SLAEITLLRSRLRFLVIEIL 129 >gi|118580491|ref|YP_901741.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] gi|118503201|gb|ABK99683.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM 2379] Length = 172 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 13 DKIQQELRWRQQEERPRIIKAISE----ARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68 ++ ++L R +I E Y + A Y A + E R A E Sbjct: 23 QQLSRDLELLLSAARTAHEASIHEDNVPENKYDTMGLEASYVAQGQANRGQEIRQAVQEY 82 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121 D + I A V+L + G KN I G +E ++ +++ Sbjct: 83 RFLTLHPFDDDS----PIRLTALVTLRAGDDGTAKNVFI-GPREGGLKVMDQGEEVMVIT 137 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +SP+ R+LIG++ GD I + G + YEI+QV Sbjct: 138 PASPLGRSLIGRQQGDCIETGSGAGIREYEIVQV 171 >gi|291008933|ref|ZP_06566906.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] Length = 109 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGL 119 R+ E++ ++ A V + G G +++ + G+ + + + AD+ + Sbjct: 8 ARIREIQELLHDAVVGEAPPDDG-VAEPGMVLTVRF-DDGETETFLLGARVGADLNGLAV 65 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148 S SP+ A G G+ + + P ++ Sbjct: 66 YSPESPLGAAQPGARQGEQRAYSLPKKKR 94 >gi|119774570|ref|YP_927310.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] gi|119767070|gb|ABL99640.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B] Length = 136 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE ++RAEV M + + + V +S ++ ++V ++ + VSI +P Sbjct: 34 LEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDVSAKGDTVSILAP 93 Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 + AL+G GD + P GG I +V + Sbjct: 94 VGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTY 126 >gi|90577235|ref|ZP_01233046.1| hypothetical protein VAS14_09329 [Vibrio angustum S14] gi|90440321|gb|EAS65501.1| hypothetical protein VAS14_09329 [Vibrio angustum S14] Length = 160 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 21/155 (13%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 ++QQ L ++A + A +++EN A E L G+ +E Sbjct: 13 RLQQTLEA----ATEAALRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEECKAD- 67 Query: 74 EVIDISTMSG------DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLV 120 VI + D + G V+L +++ K + +G + +V Sbjct: 68 -VIAYQALQANLPKVFDTVLLGHIVTLADEDDN--KRFVFLGPSSGGLVVTFDQFSVTIV 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + +SP ALIG+E+G+ + V+ YE++ + Sbjct: 125 TPTSPFGDALIGREIGEEVDVHIGDNVTWYEVMAI 159 >gi|163803786|ref|ZP_02197640.1| hypothetical protein 1103602000572_AND4_14955 [Vibrio sp. AND4] gi|159172405|gb|EDP57277.1| hypothetical protein AND4_14955 [Vibrio sp. AND4] Length = 159 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q+L + AI A + E+ A E L G R+ E E + + Sbjct: 12 QQLEDKLHVAHASTQSAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126 V+ + I+ GA V LV++N +K + +G + ++ SP+ Sbjct: 72 RVLVVRDFVDAPISVGAYVELVDENDTEKAFF--IGPCSGGLTVQWQGKEVFVLTPKSPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 ALIG+E G+ I +N YE++ V Sbjct: 130 GCALIGREEGEEIDMNIGDNRACYEVVTV 158 >gi|325955640|ref|YP_004239300.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922] gi|323438258|gb|ADX68722.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922] Length = 129 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSISS 124 L I E++ + D + V + G +++Y + + SI S Sbjct: 32 LTEEIRNMELVSRKELPADIVNINRKVRVKNHTKGTEQDYIFLSSNFREKPKKNKYSILS 91 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +A A +G++ GD + GE EIL V Sbjct: 92 SMALATLGRKTGDRFTWPFDEGEMDIEILSVE 123 >gi|153836776|ref|ZP_01989443.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810] gi|260895902|ref|ZP_05904398.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466] gi|308094401|ref|ZP_07662909.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034] gi|308125781|ref|ZP_05777348.2| transcription elongation factor [Vibrio parahaemolyticus K5030] gi|308126243|ref|ZP_05908759.2| transcription elongation factor [Vibrio parahaemolyticus AQ4037] gi|149749922|gb|EDM60667.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810] gi|308089372|gb|EFO39067.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466] gi|308091428|gb|EFO41123.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034] gi|308108568|gb|EFO46108.1| transcription elongation factor [Vibrio parahaemolyticus AQ4037] gi|308115313|gb|EFO52853.1| transcription elongation factor [Vibrio parahaemolyticus K5030] Length = 159 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74 +L + + +AI A + E+ A E L G R+ E E+ + + Sbjct: 13 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 72 Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127 + I + I GA V LV++N+ +K+ + +G D + +++ SP+ Sbjct: 73 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 130 Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GKE G+ + YE++ V Sbjct: 131 RALLGKEEGEEFEMKIGDKTTCYEVVTV 158 >gi|261253754|ref|ZP_05946327.1| transcription elongation factor [Vibrio orientalis CIP 102891] gi|260937145|gb|EEX93134.1| transcription elongation factor [Vibrio orientalis CIP 102891] Length = 158 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 7/144 (4%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78 L+ + +AI A + E+ A E L G+ ++ +++ Sbjct: 14 LQHKHAVAISSAQRAIESATDEETVPEHKYDTLALEASYLAHGQAMRVQECEQEIKMMSD 73 Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALI 131 + G + + D++ + + ++ LV+ SP+ +AL Sbjct: 74 LVLPESPEKVGLGCVVELIDVDDQRKWFFIAPCSGGLKVDIEQQSIMLVTFDSPLGKALK 133 Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 K+ GD + YEI + Sbjct: 134 AKQTGDEVEYQVGQYSHCYEIEAI 157 >gi|330903801|gb|EGH34373.1| transcription elongation factor GreB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 37 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ KE+GD + VN P GEK + + + + Sbjct: 1 DSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 35 >gi|134099089|ref|YP_001104750.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] gi|133911712|emb|CAM01825.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL 2338] Length = 120 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGL 119 R+ E++ ++ A V + G G +++ + G+ + + + AD+ + Sbjct: 8 ARIREIQELLHDAVVGEAPPDDG-VAEPGMVLTVRF-DDGETETFLLGARVGADLNGLAV 65 Query: 120 VSISSPIARALIGKELGDIISVNAP 144 S SP+ A G G+ + + P Sbjct: 66 YSPESPLGAAQPGARQGEQRAYSLP 90 >gi|294010092|ref|YP_003543552.1| transcription elongation factor [Sphingobium japonicum UT26S] gi|292673422|dbj|BAI94940.1| transcription elongation factor [Sphingobium japonicum UT26S] Length = 156 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 11/128 (8%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88 R+ + EA D AE A K + + + AE+ + +AF Sbjct: 35 RLTREKVEALEAVDTQAMAEEDAKK-----LKRELRYWRTRLATAEL--RPVPDAEAVAF 87 Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 G+ V+ +G +K IVGD EA+ G ++ S+P+ARA++ E G+ + G Sbjct: 88 GSRVTYR--LNGREKRIDIVGDDEAEPAEGRIAFSAPLARAMMDAEEGETVDFAGKPGAI 145 Query: 149 TYEILQVL 156 T IL + Sbjct: 146 T--ILAIE 151 >gi|146294926|ref|YP_001185350.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] gi|145566616|gb|ABP77551.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32] Length = 66 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48 + +T +G+ + +EL++ +E RP+I + EA A GD SENA+ Sbjct: 1 MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENAD 47 >gi|254490444|ref|ZP_05103630.1| hypothetical protein MDMS009_776 [Methylophaga thiooxidans DMS010] gi|224464188|gb|EEF80451.1| hypothetical protein MDMS009_776 [Methylophaga thiooxydans DMS010] Length = 137 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ + RA++ID + D ++ +TV L S +V +SI SP Sbjct: 35 LEDELERAKIIDSFQLPDDIVSMNSTVELWVTKSDFPVYMTLVYPYGMKKDGSTLSILSP 94 Query: 126 IARALIGKELGDIISVNAPGG 146 I AL+G + G+ G Sbjct: 95 IGTALLGIKQGEEFYWPGRDG 115 >gi|197334352|ref|YP_002155417.1| transcription elongation factor [Vibrio fischeri MJ11] gi|197315842|gb|ACH65289.1| transcription elongation factor [Vibrio fischeri MJ11] Length = 161 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M++K + D I ELR Q +AI +A ++ + E L Sbjct: 1 MINKEAL----LDSIIDELRKIHQLALDATQRAIDQATDKEAIARSKYETFGLEASYLAH 56 Query: 61 G---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGD 110 G R++E E +I+ ++ + I A V+LV ++ + + I V Sbjct: 57 GQAVRVSECEADILAYRKLPRLVYTEDSSINQCALVTLVNQDD-VESTFFIGPSAGGVKV 115 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 D+ L++ S+P+ +A+IG++LGD +N G ++ YEI+ V Sbjct: 116 AHQDLVFSLITPSAPLGKAIIGQQLGDEFELNLAGKKQQYEIIDVQ 161 >gi|299531765|ref|ZP_07045167.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44] gi|298720206|gb|EFI61161.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44] Length = 160 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 16/146 (10%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEV 75 Q E+ + EA + + +Y R + + Sbjct: 16 EDLLQVEQAARVA--HEAATHEENIAENKYDTLGLEAAYLAAGQARRAEAIRQAMANWRQ 73 Query: 76 IDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPIA 127 + + I GA + LV+ + ++ + +G +++ ++S +P++ Sbjct: 74 FRPQPYNASQGIQLGALICLVDSDDKQQQIF--LGPDGGNMKLLNGAELIQVISSKAPLS 131 Query: 128 RALIGKELGDIISVNAPGGEKTYEIL 153 RA++GK GD +SV + +E+L Sbjct: 132 RAMLGKCEGDEVSVQLAPVRQRFEVL 157 >gi|170720651|ref|YP_001748339.1| GreA/GreB family elongation factor [Pseudomonas putida W619] gi|169758654|gb|ACA71970.1| GreA/GreB family elongation factor [Pseudomonas putida W619] Length = 156 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 17/155 (10%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67 +I L + R A A A +++EN Y + R AE+ Sbjct: 7 LTRIVAALETDMEVLRRAAQTAYETATAEENIAENK-YDTLGLEASYLATGQARRTAEIR 65 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LV 120 + + + + R ++ ++E +G ++ + G + A ++ G ++ Sbjct: 66 QALLIYQQLVLRDYDPARGIQIGSLVILEDEAGAQRQVFL-GPEAAGLKIGEADALVTVI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + SP+ + L+GK++ D +S+ G + + I++V Sbjct: 125 TPRSPLGQQLVGKKVDDEVSL----GAQLFFIVEV 155 >gi|154253498|ref|YP_001414322.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans DS-1] gi|154157448|gb|ABS64665.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans DS-1] Length = 133 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 L+ + RA ++ ++ + D + +TV ++ + ++ E+ G VSI+ Sbjct: 39 FLDRELNRARLLPLAHVPSDVVKVNSTVEFTLDTRGERVERLKLAFPAESTAGDGYVSIA 98 Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156 SP+ AL+G G I + GE ++ ++L+V Sbjct: 99 SPVGVALLGLREGQSIEWTSRYGERRSLKVLKVT 132 >gi|114328079|ref|YP_745236.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] gi|114316253|gb|ABI62313.1| transcription elongation factor greB [Granulibacter bethesdensis CGDNIH1] Length = 164 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (14%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 VT G I+ E+ Q + E+ L+ + Y A+ Sbjct: 30 VTLSGLTAIEAEIARLQTALAEEKQSTVEESERRAVLARDLRYWLARR------------ 77 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126 A+++ + + + +AFG TV L G Y+IVG+ EAD + GL+S +SP+ Sbjct: 78 ----ASAQLVPTAPENAEEVAFGDTVKLK--LGGRTVTYRIVGEDEADPKQGLISYASPL 131 Query: 127 A 127 A Sbjct: 132 A 132 >gi|330884640|gb|EGH18789.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 37 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 SP+ARAL+ KE GD + VN P GEK + + +++ Sbjct: 1 DSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 35 >gi|89072414|ref|ZP_01158993.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34] gi|89051946|gb|EAR57398.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34] Length = 160 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI---I 70 ++QQ L ++A + A +++EN A E L G+ +E I Sbjct: 13 RLQQTLEA----ATEAALRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEECKADI 68 Query: 71 TRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS------ 123 T +V+ + + D + G V+L +++ + +G + S Sbjct: 69 TAYQVLQANLPKAFDTVLLGHIVTLADEDDN--MRFVFLGPSSGGLVVTFEQYSVTIVTP 126 Query: 124 -SPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP AL+G+E+G+ + ++ YE++ + Sbjct: 127 TSPFGDALVGREIGEEVDIHIGDKVTWYEVMAI 159 >gi|87119377|ref|ZP_01075275.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121] gi|86165768|gb|EAQ67035.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121] Length = 160 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 9/147 (6%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIIT 71 I++ L R + +A A ++EN E L G R+ E EN + Sbjct: 10 IKKMLEKRFETAATAAHQAYEAATDKESVAENKYDTFGLEASYLAHGQSQRVIECENDLK 69 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG---LVSISSP 125 + + D + +E+++G + I G Q D + L++ SSP Sbjct: 70 HFLSMTFKDFNEDDAIAMGALVELEESAGKQITCFISPCAGGQAFDFEGKNCLLITPSSP 129 Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152 + RAL+G L D + V K YEI Sbjct: 130 LGRALLGANLEDEVKVTIGADTKFYEI 156 >gi|326795231|ref|YP_004313051.1| transcription elongation factor GreA/GreB domain-containing protein [Marinomonas mediterranea MMB-1] gi|326545995|gb|ADZ91215.1| transcription elongation factor GreA/GreB domain-containing protein [Marinomonas mediterranea MMB-1] Length = 161 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 20/136 (14%) Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEGR--MAELENIITRAEVIDISTMSGDRIAF 88 ++++E + EN+ Y A + Q + E R + N + ++ Sbjct: 37 AESVAETKYDTFGLENS-YLAHGQTQRVFECREDLHFFMNWRPNTK-------DRGAVSV 88 Query: 89 GATVSLVEKNSGDKKNYQIVGDQEAD------VQSGLVSISSPIARALIGKELGDIISVN 142 G V + +G Y +V + LVS+ SPI ++L+GK GD +V Sbjct: 89 GDLVEV--DVNGVTSFYLLVPRCGGNKVSVQAADIQLVSLDSPIGKSLMGKSEGDEFTV- 145 Query: 143 APGGEKTY-EILQVLW 157 G + Y EI + + Sbjct: 146 LRAGVEVYAEISDIHY 161 >gi|148979983|ref|ZP_01815823.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3] gi|145961506|gb|EDK26809.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3] Length = 157 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 14/149 (9%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 +L R + + +AI A + E+ A E L G R+ E E I Sbjct: 12 DQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEEDIQCY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ----SGLVSI---SSPI 126 ++ +++ + V +++++ D+ + +G + + VSI ++P Sbjct: 72 R--NLVLRDSEKVTVSSYVVVIDEH--DQYKHFFMGPRVGGLSVTWNGNEVSIVTSNAPF 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 RAL+GKE+GD I + YE++ + Sbjct: 128 GRALMGKEVGDEIEFSVADKPFCYEVVSI 156 >gi|197103525|ref|YP_002128902.1| transcription elongation factor GreA/GreB family [Phenylobacterium zucineum HLK1] gi|196476945|gb|ACG76473.1| transcription elongation factor GreA/GreB family [Phenylobacterium zucineum HLK1] Length = 131 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + +TV+ + + ++ Q+V + A VSI SPI ALIG G + Sbjct: 54 DLRFVRLNSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRW 113 Query: 142 --NAPGGEKTYEILQVL 156 G + ++L V Sbjct: 114 AERIDGATRAVKVLAVE 130 >gi|302339975|ref|YP_003805181.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM 11293] gi|301637160|gb|ADK82587.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM 11293] Length = 131 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 E + L + + A V+D + + A V+ ++G + IV + + Sbjct: 31 EPYLRHLYDELQAAVVLDEGVLPAGTVTLYAEVAYTNLSTGSRHQASIVFPADQNHDEKR 90 Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SI +P+ ALIG+ + AP G+ I + Sbjct: 91 YSIFTPLGAALIGESEHNRTICYAPAGDIPLRIDAIT 127 >gi|118465685|ref|YP_881204.1| transcription elongation factor GreA [Mycobacterium avium 104] gi|118166972|gb|ABK67869.1| transcription elongation factor GreA [Mycobacterium avium 104] Length = 177 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 23/148 (15%) Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 ++ EL + + + + R ++ R+ LE ++ Sbjct: 17 LRDELSALRSQRSVEVPDDFMDYR-----------PGRAARPSVRRNRIRVLEELLA--- 62 Query: 75 VIDISTMSGDRIA-----FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 SGDR A G +++ +G+ + + + + + S++SP+ R+ Sbjct: 63 ---AGPGSGDRAAQAVAAPGMVLTIRYDATGETETFLLGRRNGGGGRVKVYSMASPLGRS 119 Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156 + G G+ P + +L+V+ Sbjct: 120 VAGARPGEQRIYAIPNDTGRVVTLLKVV 147 >gi|226942722|ref|YP_002797795.1| hypothetical protein Avin_05670 [Azotobacter vinelandii DJ] gi|226717649|gb|ACO76820.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 160 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 17/165 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 + K V +++ +L R + A A ++EN Y Sbjct: 1 MSKTRVLQLILARLEDDLAL----ARIAVQTAHEAATHEESVAENK-YDTRGLEAAYLAA 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---- 113 R+ E+ + R + R + + G ++ + G A Sbjct: 56 GQSRRLEEIRQALNRYRNLQARPFDAGRGIQLTDLVRLVDGQGVEQTLFL-GPDAAGLKV 114 Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 D Q +++ SP+ + L+G+ GD I + G + YE+L+V Sbjct: 115 RDGDRQVMVITPRSPLGQRLLGRGEGDEIELTLAGALQRYEVLEV 159 >gi|254417960|ref|ZP_05031684.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3] gi|196184137|gb|EDX79113.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3] Length = 141 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 L+ + RA + + + V+ S + QIV EAD+ +G VS+ S Sbjct: 42 LQEELERAVICEPGDRPRGAAPLHRWLHYVDGRSPQPRRIQIVLPNEADIDAGKVSVLSY 101 Query: 126 IARALIGKELGDIISVNAPGG 146 + LIG G I+ P G Sbjct: 102 VGAGLIGLVEGHTIAWTDPSG 122 >gi|120554811|ref|YP_959162.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8] gi|120324660|gb|ABM18975.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8] Length = 128 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 LE+ ++RA++ ++ M + + V + +++G++ +V E VSI +P Sbjct: 34 LEDELSRADMKPLADMPEGVVTMNSRVRFLNEDTGEEHEVALVYPHEVGDADHKVSILAP 93 Query: 126 IARALIGKELGDIISV 141 A++G +G I Sbjct: 94 AGAAMLGLSIGSSIEW 109 >gi|209694346|ref|YP_002262274.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238] gi|208008297|emb|CAQ78443.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238] Length = 173 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 18/168 (10%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA----AKELQ 56 M++K + D I Q+LR Q +AI +A + ++Y+ A L Sbjct: 12 MIEKEAL----LDSIIQQLRQVHQMALEATQRAIEQA-TDKEAIARSKYETFGLEASYLA 66 Query: 57 NLNEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-------V 108 + R++E +I+ ++ + I A V+LV ++ + + I V Sbjct: 67 HGQARRVSECDADILAYRKLPRLEYGEDSVINQCALVTLVNQDD-IESQFFIGPSAGGGV 125 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 D+ L++ S+P+ +A+IGK+LGD ++ G ++ YEI+ V Sbjct: 126 KVTHEDMTFLLITPSAPLGKAMIGKQLGDEFELDLSGRKQQYEIIGVQ 173 >gi|167649023|ref|YP_001686686.1| GreA/GreB family elongation factor [Caulobacter sp. K31] gi|167351453|gb|ABZ74188.1| GreA/GreB family elongation factor [Caulobacter sp. K31] Length = 139 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84 RP II A +EA L+ A + L E I RAE+ M Sbjct: 8 VARPDIILAETEADRLSALATRLRDAAPQAADLLLE--------EIERAEIRADLDMPRT 59 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + + V V++ G+ + +V ++AD+ +G VS+ S + LIG I Sbjct: 60 VVRMESVVQFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPDR 119 Query: 145 GG-EKTYEILQVL 156 G ++T IL+V Sbjct: 120 NGRQRTLRILKVR 132 >gi|156975529|ref|YP_001446436.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116] gi|156527123|gb|ABU72209.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116] Length = 159 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 Q+L + +AI A + E+ A E L G R+ E E + + Sbjct: 12 QQLEDKLHVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126 + + RIA GA V LV++N +K + +G + ++ SP+ Sbjct: 72 RTLVLRDFVDARIAVGAYVELVDENDVEKAFF--IGPCSGGLTVEWQGKEVFVLTPKSPL 129 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+GKE G+ I V YE++ V Sbjct: 130 GCALVGKEEGEDIDVKIGDKTTCYEVVTV 158 >gi|114775474|ref|ZP_01451042.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans PV-1] gi|114553585|gb|EAU55966.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans PV-1] Length = 161 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 15/136 (11%) Query: 32 KAISEARA---YGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 +A+S AR + D +++Y+ + R+ E+E + E +S + Sbjct: 26 QAVSIARDTAVHADCLGSSKYETMGLEASYLAQGQGKRLLEVERALAYFE--QLSLPAPS 83 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGD------QEADVQSGLVSISSPIARALIGKELGDI 138 + +++ ++ +++ + D AD ++++ SP+ AL+GK GD Sbjct: 84 PVIGLSSLVVLADEHHEQRYLWLAADAGGLKIDYADTPITIITVKSPLGSALVGKAAGDE 143 Query: 139 ISVNAPGGEKTYEILQ 154 + G + Y ++ Sbjct: 144 FEICIAGKTRAYTVVS 159 >gi|193078340|gb|ABO13313.2| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978] Length = 1250 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 59 NEGRMAELENIITRAEVID-----ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E + ++ N +V + ++ +I T L + I D+ Sbjct: 717 VEAEIFKVLNSFINLKVSEKHPFFEEELTNAQIGTAITYKLKNM----TETKIIDFDESL 772 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + +S S +A+ LIGK++GD ++ G E YEI ++ Sbjct: 773 PRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 816 >gi|78221459|ref|YP_383206.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] gi|78192714|gb|ABB30481.1| GreA/GreB family elongation factor [Geobacter metallireducens GS-15] Length = 160 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 12/160 (7%) Query: 7 VTSKGF-----DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +T + + +L R A E + + +A+ Q Sbjct: 1 MTKEQLLNQITAALDADLAVLATAARFAHEAATHEECIPDNKYDTTALEASYVAQGQ-AN 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV----GDQEADVQS 117 R E+ + V+ + + + ++E G+ + + G + AD + Sbjct: 60 RAQEIRMALESYRVLALREFDDETPIRLTALVILEDEDGEARRVFLGPEAGGLKIADGEG 119 Query: 118 GL--VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + ++ SP+ R L+GK +GD + G KT+ +++V Sbjct: 120 EIVVITPQSPLGRVLLGKVVGDQLQAGMGGTRKTFTVVEV 159 >gi|126642931|ref|YP_001085915.1| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978] Length = 1216 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 59 NEGRMAELENIITRAEVID-----ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E + ++ N +V + ++ +I T L + I D+ Sbjct: 683 VEAEIFKVLNSFINLKVSEKHPFFEEELTNAQIGTAITYKLKNM----TETKIIDFDESL 738 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156 + +S S +A+ LIGK++GD ++ G E YEI ++ Sbjct: 739 PRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 782 >gi|291300432|ref|YP_003511710.1| hypothetical protein Snas_2942 [Stackebrandtia nassauensis DSM 44728] gi|290569652|gb|ADD42617.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM 44728] Length = 1801 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140 + D++A G+ + L + + + + + + +SP+ A+IG E+GD++ Sbjct: 1725 VDADQVAIGSRIRLRFLDGNREVHEGTIAEDGDGPT--HIPANSPLGVAIIGAEVGDVVP 1782 Query: 141 VNAPGGEKTYEILQV 155 + + +E++ V Sbjct: 1783 LLVDSRIRRFEVVAV 1797 >gi|331089360|ref|ZP_08338260.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405423|gb|EGG84958.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium 3_1_46FAA] Length = 67 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 37/53 (69%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56 + +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ + Sbjct: 2 REKLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEK 54 >gi|146283249|ref|YP_001173402.1| transcription elongation factor [Pseudomonas stutzeri A1501] gi|145571454|gb|ABP80560.1| transcription elongation factor [Pseudomonas stutzeri A1501] Length = 158 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 15/154 (9%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 +I L ++ + + A +EN Y R+ E+E Sbjct: 8 QQIIATLEADREVAKAVLAATHEAATHAESKAENK-YDTRGLEAAYLADGQRRRLHEIET 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VS 121 + + S R+ GA L+ + + + +G A ++ ++ Sbjct: 67 ALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDGREILVIT 123 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 SP+ + L+G+EL D + + G + YE+LQ+ Sbjct: 124 ARSPLGQGLLGRELRDEVELRVHGQLQRYEVLQI 157 >gi|157375539|ref|YP_001474139.1| hypothetical protein Ssed_2402 [Shewanella sediminis HAW-EB3] gi|157317913|gb|ABV37011.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 168 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---------------DVQSGLVSISSPI 126 I GA V ++++ ++ + +G DV+ +++ SSP+ Sbjct: 81 DETPIGLGALVVIMDEKDDEQSLF--IGPGAGGVKFSMKVDNQALAEDVEVMVITPSSPL 138 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 AL+G+ L D + +N K YEI+ V Sbjct: 139 GNALMGRMLDDTVVINIGDNRKEYEIIAV 167 >gi|162457080|ref|YP_001619447.1| hypothetical protein sce8795 [Sorangium cellulosum 'So ce 56'] gi|161167662|emb|CAN98967.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 167 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 10/151 (6%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 D++ +EL + R E + +A+ + +E R+ ++E + R Sbjct: 20 DQLARELERSTERARDAASAVTHEENRAEGDKDMRATEASYVARGHSE-RVLQIEQALAR 78 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-------SP 125 + + + LVE SG ++ + + + SP Sbjct: 79 LGAVTVRDFGPGAGIESSA--LVELESGKRRALYFLLPAAGGERIQFQGVELQTLATTSP 136 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + +L+G GD V P G +T+ I V Sbjct: 137 LGASLLGLSEGDEAEVATPQGTRTHLIASVR 167 >gi|148549064|ref|YP_001269166.1| GreA/GreB family elongation factor [Pseudomonas putida F1] gi|148513122|gb|ABQ79982.1| GreA/GreB family elongation factor [Pseudomonas putida F1] Length = 258 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67 I L A A A +++EN Y + R AE+ Sbjct: 109 LALIVATLAHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLATGQARRSAEIR 167 Query: 68 NIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118 + + + D G +++ T +E G ++ + G + A ++ G Sbjct: 168 QALVIYQQLLLRDYDPARGVQVSNLVT---LENEDGAQRRLFL-GPEAAGLKIGEGDGLV 223 Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++ SP+ + L+GK + D +++ G + I+ V+ Sbjct: 224 TVITPRSPLGQQLLGKRVDDEVNL----GAQVSFIVDVV 258 >gi|253698818|ref|YP_003020007.1| GreA/GreB family elongation factor [Geobacter sp. M21] gi|251773668|gb|ACT16249.1| GreA/GreB family elongation factor [Geobacter sp. M21] Length = 151 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 13/151 (8%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 +++ +L R A E + + +A+ Q R E+ + Sbjct: 7 ERLAADLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQ-ANRAQEIRRALHA 65 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSP 125 ++ + + +E G K + + G QE ++ + ++ SP Sbjct: 66 YRSLEPQAFGAGQAIRLTALVTLEGEDGCGKTFFL-GPQEGGLKLEIEGEEVVVITPGSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + LIGK GD + G+ YEI+ V Sbjct: 125 MGQELIGKSAGDEARI----GKVAYEIVAVS 151 >gi|307293531|ref|ZP_07573375.1| transcription elongation factor GreA/GreB domain-containing protein [Sphingobium chlorophenolicum L-1] gi|306879682|gb|EFN10899.1| transcription elongation factor GreA/GreB domain-containing protein [Sphingobium chlorophenolicum L-1] Length = 156 Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 VT++G ++++ + E + + + + K R+A Sbjct: 28 WVTARGLRLTREKVEALEAVETEAMAEE--------------DAKKLKRELRYWRTRLAT 73 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 E + +AFG+ V+ +G +K +VGD EA+ G ++ S+P Sbjct: 74 AELR---------PVPDAEAVAFGSRVTYR--LNGKEKRIDLVGDDEAEPAEGRIAFSAP 122 Query: 126 IARALIGKELGDII 139 +ARA++ E G+ + Sbjct: 123 LARAMMDAEEGEAV 136 >gi|330808358|ref|YP_004352820.1| GreA-GreB family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376466|gb|AEA67816.1| putative Transcription factor, GreA-GreB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 162 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 17/154 (11%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67 DK++ +L R + E + + +Y + R+ E+ Sbjct: 13 LDKLKIDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIR 67 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------V 120 +T + + + R T+ +E G ++ + +G A ++ L + Sbjct: 68 QALTLCQNLTLRPYDEQRGIQVGTLIGLEDEDGRQQ-WLFLGPDAAGLKVSLVGQPITVI 126 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + SP+ R L+GK GD + + G + + + + Sbjct: 127 TPRSPLGRGLLGKFEGDEVEIVVAGARQQFAVTE 160 >gi|77920154|ref|YP_357969.1| putative transcriptional elongation factor [Pelobacter carbinolicus DSM 2380] gi|77546237|gb|ABA89799.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM 2380] Length = 185 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-- 117 R E+ + + + + S + + +E G ++ + +G ++ Sbjct: 84 ANRAQEIRHALQAFRQLTLQRFSENSPIRQTALVQLEDEEGQRR-WLFLGPAAGGLRLSF 142 Query: 118 -----GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ +SP+ +AL+GK+ GD++ + G + YEI+ + Sbjct: 143 GKREVMVITPASPLGKALLGKQCGDLVEIAGDVG-REYEIVSI 184 >gi|197103524|ref|YP_002128901.1| transcription elongation factor [Phenylobacterium zucineum HLK1] gi|196476944|gb|ACG76472.1| transcription elongation factor [Phenylobacterium zucineum HLK1] Length = 143 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSPI 126 N ++RA ++ D + G+ V + + + ++V +EA + VS + I Sbjct: 42 NELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRLVLPREARPPALEPVSGT--I 99 Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156 AL+G GD+ AP GE ++ ++ V Sbjct: 100 GAALLGLRPGDVFHWRAPSGELRSLQVDAVE 130 >gi|104780733|ref|YP_607231.1| hypothetical protein PSEEN1559 [Pseudomonas entomophila L48] gi|95109720|emb|CAK14421.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 160 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 66/158 (41%), Gaps = 21/158 (13%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRMAE 65 +I L + R A A A +++EN A Y A + + E R Sbjct: 9 RIIATLELDMEVLRRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRTAEIR--- 65 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------- 118 + ++T +++ I G V+L +++ ++ +G + A ++ G Sbjct: 66 -QALLTYQQMVLRDYDPARGIQVGCLVTLEDEDG--QQRLLFLGPEGAGLKIGEGDALVT 122 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +++ +P+ + L+GK + D +S+ G + I++V Sbjct: 123 VITPRAPLGQQLVGKRIDDEVSLLVNGITQVQVIIEVT 160 >gi|148264888|ref|YP_001231594.1| hypothetical protein Gura_2848 [Geobacter uraniireducens Rf4] gi|146398388|gb|ABQ27021.1| GreA/GreB family elongation factor [Geobacter uraniireducens Rf4] Length = 161 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGDRI 86 KA EA + + + +Y+ + R E++ + + + + + D Sbjct: 26 AKAAHEASIHEENIPDNKYETLSLEASYVAQGQANRAQEIKIALDTYKKLSLQHFAEDVP 85 Query: 87 AFGATVSLVEKNSGDKKNYQIVGD------QEADVQSGLVSISSPIARALIGKELGDIIS 140 + +E G +K I + ++ V++ +++ +SP+ LIGK GD + Sbjct: 86 IRLTALVTLEAGDGVEKTVFIGPEAGGLKVEDGGVETIVITPNSPLGEGLIGKIAGDSVE 145 Query: 141 VNAPGGEKTYEILQV 155 V + +EI++V Sbjct: 146 VGRGNAKSVFEIVEV 160 >gi|84388970|ref|ZP_00991178.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01] gi|84377034|gb|EAP93906.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01] Length = 157 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 14/149 (9%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 ++L R + + +AI A + E+ A E L G R+ E E+ I Sbjct: 12 EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEDDIQCY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLVSISSPI 126 ++ +RI + V +++++ D+ + +G + + + +V+ ++P Sbjct: 72 R--NLVLRDSERITVSSYVVVIDEH--DQYKHFFMGPRVGGLSVTWNENEIAIVTENAPF 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GKE+GD I + YE++ + Sbjct: 128 GQALMGKEVGDEIEFKVADKQFCYEVISI 156 >gi|325168696|ref|YP_004280486.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] gi|325064419|gb|ADY68108.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3] Length = 179 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124 +L + + V+ +S D + G+ ++ G ++ +V E +G +S+ + Sbjct: 71 DLSEKLENSWVLADEQVSLDTVCLGS--TVSYDVEGQQRQVTLVLPNEVLADAGRLSVLT 128 Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155 P+ AL+G + G N+ G + +++V Sbjct: 129 PVGVALLGLKPGQRGEWNSRDGHRHQLTVVRV 160 >gi|86145686|ref|ZP_01064016.1| hypothetical protein MED222_01992 [Vibrio sp. MED222] gi|218708725|ref|YP_002416346.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32] gi|85836657|gb|EAQ54783.1| hypothetical protein MED222_01992 [Vibrio sp. MED222] gi|218321744|emb|CAV17699.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32] Length = 157 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 14/149 (9%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73 ++L R + + +AI A + E+ A E L G R+ E E I Sbjct: 12 EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEGDIQCY 71 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPI 126 + + ++ V + D+ + +G + + + +V+ ++P Sbjct: 72 RNLVLRDSEKITVSSYVVV----IDEHDQYKHFFMGPRVGGLSVTWNNNEVAIVTENAPF 127 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155 +AL+GKE+GD I + YE++ + Sbjct: 128 GQALMGKEVGDEIEFKVADKQFCYEVISI 156 >gi|289759954|ref|ZP_06519332.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715518|gb|EFD79530.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length = 40 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL G + GD ++ + P G ++L V Sbjct: 5 SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 37 >gi|215448134|ref|ZP_03434886.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis T85] Length = 42 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 SP+ +AL G + GD ++ + P G ++L V Sbjct: 7 SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 39 >gi|260466739|ref|ZP_05812925.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] gi|259029469|gb|EEW30759.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum WSM2075] Length = 180 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 9/108 (8%) Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 + E R A LE+ ++ ++V+ + ++ D + + ++G + +V D Sbjct: 19 MLERRRAFADPIVHMLEHKLSSSDVVPVDSIDPDIVTLNSRAVFC-IDAGPAETRTLVQD 77 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + +S+++ ++G G SV P G + I VL+ Sbjct: 78 EVHGPVGSSLSVATRRGLCVLGMAQGQTASVEYPDGRRESIRIKAVLY 125 >gi|323497951|ref|ZP_08102960.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326] gi|323316996|gb|EGA69998.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326] Length = 164 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75 L ++Q + + +AI A + E+ A E L G R+ E E I ++ Sbjct: 20 LEKKRQVAQSSVQRAIESATDEETVPEHKYDTLALEAAYLAHGQAMRLQECEQEIR--QI 77 Query: 76 IDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIARA 129 D+ ++ + G+ V + + + + + V G LV+ SP+ RA Sbjct: 78 TDLELPVAPSNVVMGSLVYVSDLDEVEHCYFMAPCSGGLKVTFGETEVTLVTFESPLGRA 137 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156 L G+ GD +Y+I + Sbjct: 138 LKGRMSGDEAEYKVADTMFSYQIETIS 164 >gi|157961823|ref|YP_001501857.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC 700345] gi|157846823|gb|ABV87322.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC 700345] Length = 170 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 12/112 (10%) Query: 55 LQNLNEGRMAELENI---ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111 + + E + + +I+ ++ G V L+++N K Y VG Sbjct: 61 RVAQCQADIRAFEAMFTRLNSNSIIESKGTKEPKVELGRLVLLMDENG--KNQYLFVGPG 118 Query: 112 EADVQS-------GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 ++ +V++ SP+ + K GD S+N G ++ YEI++V Sbjct: 119 AGGLKIAYEHDSIMVVTLESPLGITMANKRQGDDFSLNVAGNKREYEIIEVK 170 >gi|167032442|ref|YP_001667673.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] gi|166858930|gb|ABY97337.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1] Length = 156 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 25/159 (15%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRM 63 I L A A A +++EN A Y A + + E R Sbjct: 7 LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSGEIRQ 66 Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118 A ++ +++ + V+L ++ G ++ ++G + A ++ G Sbjct: 67 A----LLIYQQLLLRDYDPARGVQVSNLVTLEDELGGQRR--LLLGPEAAGLKIGEGDGL 120 Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ + L+GK++ D +++ G++ I+ V Sbjct: 121 VTVITPRSPLGQQLMGKKIDDEVNL----GQQLLFIVDV 155 >gi|26988584|ref|NP_744009.1| hypothetical protein PP_1854 [Pseudomonas putida KT2440] gi|24983358|gb|AAN67473.1|AE016374_5 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 156 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 19/142 (13%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67 I L A A A +++EN Y + R AE+ Sbjct: 7 LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLATGQARRSAEIR 65 Query: 68 NIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118 + + + D G +++ V+L ++ G ++ + +G + A ++ G Sbjct: 66 QALVIYQQLLLRDYDPARGVQVS--NLVTLENEDGGQRRLF--LGPEAAGLKIGEGDGLV 121 Query: 119 -LVSISSPIARALIGKELGDII 139 +++ SP+ + L+GK + D + Sbjct: 122 TVITPRSPLGQQLLGKRVDDEV 143 >gi|325276019|ref|ZP_08141838.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] gi|324098851|gb|EGB96878.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51] Length = 158 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 21/157 (13%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA------EYQAAKELQNLNEGRMAE 65 +I L A A A +++EN E Q ++ + Sbjct: 9 LAQIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSAQIRQ 68 Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSG 118 I + + D G +++ T +E +G+++ + G + A D Sbjct: 69 ALLIYQQLLLRDYDPARGVQVSNLVT---LEDEAGEQRRVFL-GPEAAGLKIAAADGLVT 124 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ + L+GK + D +S+ G + ++ V Sbjct: 125 VITPRSPLGQVLLGKRVDDEVSL----GVQVLFVVDV 157 >gi|153001961|ref|YP_001367642.1| GreA/GreB family elongation factor [Shewanella baltica OS185] gi|151366579|gb|ABS09579.1| GreA/GreB family elongation factor [Shewanella baltica OS185] Length = 133 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + D++ G + LV + ++V + +G S+ S + +L+G+ G++ Sbjct: 48 DTASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107 Query: 140 SVNAPGGEKTYEILQVL 156 V+ G + I + Sbjct: 108 EVSILGKPVLFMINDIS 124 >gi|260062081|ref|YP_003195161.1| hypothetical protein RB2501_10827 [Robiginitalea biformata HTCC2501] gi|88783643|gb|EAR14814.1| hypothetical protein RB2501_10827 [Robiginitalea biformata HTCC2501] Length = 149 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 43 LSENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 + E EY A N + L+ + A ++D D + V+L Sbjct: 8 VFERQEYDALLMSLEANRVYDDYAHQHAARLLKRNMASALILDQGECPDDVVRPDVWVTL 67 Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 S ++ ++ + G +S+ S + ++IG+ GD+I PG + I + Sbjct: 68 KGVPS-YRRTVRLASSGKPITTPGDISVISALGASIIGRSEGDVILFGQPGNTMSLTIAK 126 Query: 155 VL 156 + Sbjct: 127 IS 128 >gi|212635479|ref|YP_002312004.1| transcription elongation factor [Shewanella piezotolerans WP3] gi|212556963|gb|ACJ29417.1| Transcription elongation factor [Shewanella piezotolerans WP3] Length = 190 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGD 137 +IA G V LV++ D + +G ++ L++ SPI L+ +E+GD Sbjct: 114 QIALGHLVELVDEQ--DIVSLLFMGPNAGGLKIDFAKCNFMLITPQSPIGEKLMSREVGD 171 Query: 138 IISVNAPGGEKTYEILQV 155 +S+N G YEI+ + Sbjct: 172 EVSINVAGKRHHYEIVGI 189 >gi|254427436|ref|ZP_05041143.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881] gi|196193605|gb|EDX88564.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881] Length = 128 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91 A+ E + Y A L L+ R+ + I ++ A G Sbjct: 2 AALMERLSLCRYGYGKRYLAKNPLFFLSPVRLMIVMEKIEMLRGVE---RELAAAAVGDR 58 Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151 VSL ++ ++ + + + +S+ SP+ AL+G G +++VN G Y Sbjct: 59 VSLFSFEDEEQMSFTLAEAGKRSLGDKDISVLSPLGAALLGALPGAVVNVNFLGHGHRYL 118 Query: 152 ILQV 155 +L+V Sbjct: 119 LLKV 122 >gi|315126486|ref|YP_004068489.1| hypothetical protein PSM_A1405 [Pseudoalteromonas sp. SM9913] gi|315015000|gb|ADT68338.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 158 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K VT ++++L + + A E + +AA Q + Sbjct: 1 MNKAHVTEHLRFALEEQLNTAKIAAQTAHDTATHEESIAETQYDTLGLEAAYLAQGHAD- 59 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG 118 R+ E I E I ++G +++ +E ++G +K + + G D++ Sbjct: 60 RVNECYKEIQLFEAIYNDVVTGTIAV--SSLVCLEDDAGTQKWFYLGPAAGGLTVDIKGT 117 Query: 119 LVSISS---PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + + P+ + L+GK++ D +S+ + +Y++++VL Sbjct: 118 TIQVLTSGAPLGQQLLGKQVDDEVSLTLGDVKHSYDVVKVL 158 >gi|126173156|ref|YP_001049305.1| GreA/GreB family elongation factor [Shewanella baltica OS155] gi|125996361|gb|ABN60436.1| GreA/GreB family elongation factor [Shewanella baltica OS155] Length = 133 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + D++ G + LV + ++V + +G S+ S + +L+G+ G++ Sbjct: 48 DTANDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107 Query: 140 SVNAPGGEKTYEILQVL 156 V+ G + I V Sbjct: 108 EVSILGKPVLFMIKDVS 124 >gi|160876682|ref|YP_001555998.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|160862204|gb|ABX50738.1| GreA/GreB family elongation factor [Shewanella baltica OS195] gi|315268882|gb|ADT95735.1| transcription elongation factor GreA/GreB domain-containing protein [Shewanella baltica OS678] Length = 133 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 ++ D++ G + LV + ++V + +G S+ S + +L+G+ G++ Sbjct: 48 DVASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPNAGRFSVISDLGVSLLGRSKGELA 107 Query: 140 SVNAPGGEKTYEILQVL 156 V+ G + I V Sbjct: 108 EVSILGKPVLFMIKDVS 124 >gi|313499982|gb|ADR61348.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1] Length = 156 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 23/156 (14%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK + I L A A A +++EN Y + Sbjct: 1 MDKPYL----LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLAT 55 Query: 61 ---GRMAELENIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 R AE+ + + + D G +++ V+L ++ G ++ + +G + A Sbjct: 56 GQARRSAEIRQALVIYQQLLLRDYDPARGVQVS--NLVTLENEHGGQRRLF--LGPEAAG 111 Query: 115 VQSG-------LVSISSPIARALIGKELGDIISVNA 143 ++ G +++ SP+ + L+GK + D +++ A Sbjct: 112 LKIGEGDGLVTVITPRSPLGQQLLGKRVDDEVNLGA 147 >gi|146305505|ref|YP_001185970.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp] gi|145573706|gb|ABP83238.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp] Length = 160 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 ++K + ++Q +L + A A +++EN Y Sbjct: 1 MNKTLLLQAVLSQLQADLEQANL----AALSAHETATHEENVAENK-YDTLGLEAAYLAS 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ- 116 R+ EL + + + + L+ G ++ + +G Q A ++ Sbjct: 56 GQARRVEELRQTLITWRQLRPRPFDEAQGIELGALVLLAGEDGHEQ-WLFLGPQGASMKL 114 Query: 117 ------SGLVSISSPIARALIGKELGDIISVNAPGGEK--TYEILQ 154 ++ ++P+ R L+GK GD +N P G++ +E+L Sbjct: 115 QHAGRSIQVLGNAAPLGRLLLGKRPGD--EINLPMGKRLQLFEVLA 158 >gi|270602105|ref|ZP_06221570.1| transcription elongation factor GreA [Haemophilus influenzae HK1212] gi|270318242|gb|EFA29436.1| transcription elongation factor GreA [Haemophilus influenzae HK1212] Length = 33 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 IAR LIGKEL D +++ PGG ++I++V +I Sbjct: 1 IARGLIGKELDDTVNITTPGGIVEFDIIEVNYI 33 >gi|167624223|ref|YP_001674517.1| GreA/GreB family elongation factor [Shewanella halifaxensis HAW-EB4] gi|167354245|gb|ABZ76858.1| GreA/GreB family elongation factor [Shewanella halifaxensis HAW-EB4] Length = 165 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARAL 130 +S ++ G V L++ + K Y VG ++ +V+++SP+ RA+ Sbjct: 82 VSETRAPKVGLGKLVELMDADG--KSQYLFVGPGAGGLKVTCDEYSVMIVTLASPLGRAM 139 Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156 + K GD S+ G + YEI+ V Sbjct: 140 MSKLQGDEFSLQVAGSRRDYEIVMVS 165 >gi|217974535|ref|YP_002359286.1| GreA/GreB family elongation factor [Shewanella baltica OS223] gi|217499670|gb|ACK47863.1| GreA/GreB family elongation factor [Shewanella baltica OS223] Length = 133 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 + D++ G + LV + ++V + +G S+ S + +L+G+ G++ Sbjct: 48 DTASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107 Query: 140 SVNAPGGEKTYEILQVL 156 V+ G + I V Sbjct: 108 EVSILGKPVLFMIKDVS 124 >gi|223934353|ref|ZP_03626274.1| conserved hypothetical protein [bacterium Ellin514] gi|223896816|gb|EEF63256.1| conserved hypothetical protein [bacterium Ellin514] Length = 159 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 12/152 (7%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 D++ + L+ ++ R +A E +EN E L G+ +++ I+ Sbjct: 12 DELTKSLQVLEKAARASHAEATHE----SSKAENKYDTRGLEAAYLAGGQARQVKEIMES 67 Query: 73 AEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISS 124 ++ + + + +LVE + +N +G + ++ ++ S Sbjct: 68 IKIYEAMAPRNFGAEEPIDLAALVELEADGSRNIYFIGPRSGGLEVNYARKEIIVITPQS 127 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ LIGK+ G G Y I+ V+ Sbjct: 128 PLGSNLIGKKKGQRWKTQVGGNTINYHIVSVV 159 >gi|289624634|ref|ZP_06457588.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651140|ref|ZP_06482483.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330870018|gb|EGH04727.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 118 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 + L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89 Query: 122 ISSPIARALIGKELGD 137 + +P+ AL+G ++G Sbjct: 90 VLAPMGSALLGLQVGQ 105 >gi|260771051|ref|ZP_05879979.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972] gi|260613940|gb|EEX39131.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972] Length = 138 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ + Sbjct: 46 NTTRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLEL 105 Query: 142 NAPGGEKTYEILQVLW 157 G + Y I ++++ Sbjct: 106 RILGRSRRYAITEIVY 121 >gi|24372678|ref|NP_716720.1| putative transcription elongation factor [Shewanella oneidensis MR-1] gi|24346727|gb|AAN54165.1|AE015553_10 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 128 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 S + +++ G V LV + + ++V ++G S+ S + +L+G+ G+ Sbjct: 47 SDDTVEKVTLGREVVLVNQQDQQEYRVELVYPPRHKPRAGRYSVISDLGVSLLGRSKGEY 106 Query: 139 ISVNAPGGEKTYEILQV 155 VN G + + + Sbjct: 107 AEVNILGKPVLFMVKDI 123 >gi|330501417|ref|YP_004378286.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01] gi|328915703|gb|AEB56534.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01] Length = 160 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 21/167 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK + +Q +L EA + + +Y Sbjct: 1 MDKNLLLQDVLTHLQADLEQASLAALTA-----HEAATHEENVAENKYDTLGLEAAYLAS 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ- 116 R+ EL + + + + L+ G ++ + +G Q A ++ Sbjct: 56 GQARRVEELRQTLITWRQLRPRPFDAAQGIELGALILLASEDGHEQ-WLFLGPQGASMKL 114 Query: 117 ------SGLVSISSPIARALIGKELGDIISVNAPGGEK--TYEILQV 155 ++ ++P+ R L+GK GD +N P G++ +E+L V Sbjct: 115 QHAGQSIQVLGNAAPLGRLLLGKHPGD--EINLPMGQRLQAFEVLTV 159 >gi|222055636|ref|YP_002537998.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32] gi|221564925|gb|ACM20897.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32] Length = 159 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGDRI 86 K EA + + + +Y + R +E+ + + + + +M G I Sbjct: 25 AKTAHEAATHSENLPDNKYDTLALEASYVAQGQANRASEIRQAMEVYKQLKLLSMDGGEI 84 Query: 87 AFGATVSLVEKNSGDKKNYQIV----GDQEADVQSGLVSIS--SPIARALIGKELGDIIS 140 A V L E G K I G + A ++ +V I+ SP+ L+GK +GD + Sbjct: 85 RLTALVRL-EAEDGASKTIFIGPLEGGLKIAFGRAEVVVITPGSPLGSELMGKTIGDAVQ 143 Query: 141 VNAPGGEKTYEILQV 155 V YEI +V Sbjct: 144 VGIGPNRIEYEIAEV 158 >gi|54303094|ref|YP_133087.1| hypothetical protein PBPRB1420 [Photobacterium profundum SS9] gi|46916522|emb|CAG23287.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 171 Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 13/160 (8%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK + +++ L Q ++A + A +++EN A E L G Sbjct: 12 MDKTLL----LEQMITALEETHQGAVEAALRAYNTATNDENVAENQYDTLALEASYLAHG 67 Query: 62 ---RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQI-----VGDQE 112 R+AE E I + ID + + G + L++++ ++ + + + Sbjct: 68 QAQRVAECEADILAFKKIDMAADTEKKVVTLGCLIQLIDEDDNNRYVFFAPSAGGLKIRF 127 Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 D +V+ +SP+ ALIG+EL D ++V+ YEI Sbjct: 128 DDKDIIVVTPTSPLGEALIGRELHDDVNVHIGSQIINYEI 167 >gi|315178622|gb|ADT85536.1| hypothetical protein/transcription elongation factor GreA [Vibrio furnissii NCTC 11218] Length = 138 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 + RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ + Sbjct: 46 NATRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLEL 105 Query: 142 NAPGGEKTYEILQVLW 157 G + Y I ++++ Sbjct: 106 RILGRSRRYAITEIVY 121 >gi|325284349|ref|YP_004256889.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] gi|324316413|gb|ADY27526.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP] Length = 174 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64 I +T G +Q L Q+ + A A + + E R+ Sbjct: 3 IVMTPLGLRALQS-LIQTQEARLTELRAAHRRALEDCRDDTDGSIGQSAAACTEAETRLL 61 Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD---KKNYQIVGDQEADV------ 115 +LE+ + A + + SG+++ G ++ G IV EA++ Sbjct: 62 QLEDALEGAVL---AQPSGEQVEPGTVATVSASVDGRPVRTFKVLIVSALEAELLGRSVG 118 Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG--EKTYEILQVLWI 158 + S +SPI AL+ + G+ +N GG ++ +I Q+ + Sbjct: 119 DLQVASENSPIGMALLAAQEGNRCLLNLGGGRPQQWLKIQQIETV 163 >gi|312131674|ref|YP_003999014.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM 17132] gi|311908220|gb|ADQ18661.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM 17132] Length = 163 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 26/163 (15%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62 DKI + + + Q+L+ IK + +A S + NE Sbjct: 16 DKIKILQEAYSHFSQKLKDLDSH-----IKTVQDAANQESKSSVGDKYETGRAMAQNEVF 70 Query: 63 MAELENIITRAEVIDISTM----SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DV 115 M + + R EV + ++ S D + G+ V + ++G Sbjct: 71 MLKTQFESLRIEVEKLGSLLLSDSKDTASSGSLVK-------TSQGQFLLGPALGKWKSE 123 Query: 116 QSGL---VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + G+ +S+ +P+ AL GK+ GD VN ++ +IL + Sbjct: 124 EKGVFYFISLDAPLGHALQGKKKGDSFEVN----QRKDKILDI 162 >gi|117919375|ref|YP_868567.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] gi|117611707|gb|ABK47161.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3] Length = 128 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 S + D++ G + LV + + ++V ++G S+ S + +L+G+ G+ Sbjct: 47 SEETQDKVTVGREILLVNQQDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106 Query: 139 ISVNAPGGEKTYEILQVL 156 VN G + + + Sbjct: 107 AEVNILGKPVLFMVKDIT 124 >gi|224370462|ref|YP_002604626.1| GreA2 [Desulfobacterium autotrophicum HRM2] gi|223693179|gb|ACN16462.1| GreA2 [Desulfobacterium autotrophicum HRM2] Length = 95 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 120 VSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157 +SI +P+ AL+G +GD I P GG I ++++ Sbjct: 47 ISILAPVGSALLGLSIGDKIEWPKPGGGNLKVRITEIIY 85 >gi|304410489|ref|ZP_07392107.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|307304581|ref|ZP_07584331.1| GreA/GreB family elongation factor [Shewanella baltica BA175] gi|304350973|gb|EFM15373.1| GreA/GreB family elongation factor [Shewanella baltica OS183] gi|306911983|gb|EFN42407.1| GreA/GreB family elongation factor [Shewanella baltica BA175] Length = 133 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139 ++ D++ G + LV + ++V + +G S+ S + +L+G+ G++ Sbjct: 48 DVASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107 Query: 140 SV 141 V Sbjct: 108 EV 109 >gi|197116582|ref|YP_002137009.1| transcription elongation factor GreA/GreB domain-containing protein [Geobacter bemidjiensis Bem] gi|197085942|gb|ACH37213.1| transcription elongation factor GreA/GreB domain protein [Geobacter bemidjiensis Bem] Length = 151 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 13/151 (8%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 +++ +L R A E + + +A+ Q R E+ + Sbjct: 7 ERLATDLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQ-ANRAQEIRRALHA 65 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSP 125 +++ S + + +E G K + I G QE ++ + +++ SP Sbjct: 66 YRSLELQEFSAGQAIRLTALVTLEGEDGGGKTFFI-GPQEGGLKLEIEGKEVVVITLGSP 124 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + LIGK GD + G YEI+ V Sbjct: 125 MGQELIGKSAGDEARI----GRVAYEIVAVS 151 >gi|42524974|ref|NP_970354.1| hypothetical protein Bd3631 [Bdellovibrio bacteriovorus HD100] gi|39577185|emb|CAE81008.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 159 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 22/167 (13%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK + + I+ +L + + I A +EN EY + Sbjct: 1 MDKKKL----IEAIRTQLVADMTALKEAVKATIDAATNEESKAEN-EYDTRGLEASYLAR 55 Query: 62 ----RMAELEN---IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------V 108 R+A++E ++ V D G ++ + +++G + I V Sbjct: 56 GQAKRIADIEEVLLLLKHLSVRDFGPNDG----ISSSAVIEVEHNGKTSFFFILAKGGGV 111 Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 Q +V+ +SP+ AL+ +++G + V + Y+I+ + Sbjct: 112 SVQFEGKTIQVVTPNSPLGEALLDQKVGGVAVVENGPQVREYDIINI 158 >gi|70731618|ref|YP_261359.1| hypothetical protein PFL_4267 [Pseudomonas fluorescens Pf-5] gi|68345917|gb|AAY93523.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 139 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 51/139 (36%), Gaps = 12/139 (8%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 R + E + + +Y + R+ E+ + + + + Sbjct: 2 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQALGLWQNLSLRPYDPQ 61 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARALIGKELGD 137 + + +E +G ++ + +G A ++ +++ SP+ ++L+GK D Sbjct: 62 KGIQIGALLGLEDENGHEQ-WLFLGPDGAGLKVYVVGQLVTVITPRSPLGKSLLGKFEDD 120 Query: 138 IISVNAPGGEKTYEILQVL 156 + + G + + + +V Sbjct: 121 EVEIVVAGARQQFTVTEVR 139 >gi|260775310|ref|ZP_05884207.1| transcription elongation factor [Vibrio coralliilyticus ATCC BAA-450] gi|260608491|gb|EEX34656.1| transcription elongation factor [Vibrio coralliilyticus ATCC BAA-450] Length = 158 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS--GDRIAFG 89 +AI A + E+ A E L G+ ++ +V+ + +RI G Sbjct: 27 RAIESATDEETVPEHKYDTLALEASYLAHGQAMRVQECERDLDVMAHLQLPQQSERITLG 86 Query: 90 ATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGDIISVN 142 + VSL++ + + V ++ LV+ SP+ A+ GK +GD + Sbjct: 87 SLVSLIDLEDNRR--WFFVAPCTGGLKVQHQQQEVMLVTFDSPLGFAMKGKSMGDEVEYQ 144 Query: 143 APGGEKTYEILQVL 156 +YE+ ++ Sbjct: 145 VATTTFSYEVDTII 158 >gi|77460223|ref|YP_349730.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1] gi|77384226|gb|ABA75739.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 160 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELE 67 DK++ +L R + E + + +Y + R+ E+ Sbjct: 11 LDKLRVDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIR 65 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------V 120 + + + + R + +E G ++ + + A V+ + + Sbjct: 66 QSLALCQNLTLRAYDAQRGIEVGALLGLEDEKGREQ-WLFLAPDAAGVKVDVVGQPITVI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + SP+ ++L+GK GD + + G + + + +VL Sbjct: 125 TPRSPLGKSLLGKFEGDEVEILVAGTRQQFAVTEVL 160 >gi|149200475|ref|ZP_01877489.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155] gi|149136437|gb|EDM24876.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155] Length = 156 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 19 LRWRQQEERPRIIKAISEARAYGDLSEN---AEYQA-AKELQNLNEGRMA---ELENIIT 71 L + + + AI+E EN ++Y + E L EG++ ELE I Sbjct: 11 LERLRGDY-QESLDAINETAETATHEENIAKSKYDTKSIEAAYLVEGQIKRNGELEAEIA 69 Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISSPIARA 129 + + I + A + + +E SG + + + G+ ++ SP+ +A Sbjct: 70 AYQAMRIRSFGKKSRALLSALIKLEDESGQTIDLFMGPQAGGMIIEGVQVITPPSPLGQA 129 Query: 130 LIGKELGDIISVNAPGGEKTYEILQ 154 L+GK GD +S+ G + Y +L Sbjct: 130 LLGKYCGDEVSLELEGKIQKYRVLD 154 >gi|113969271|ref|YP_733064.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|114046468|ref|YP_737018.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] gi|113883955|gb|ABI38007.1| GreA/GreB family elongation factor [Shewanella sp. MR-4] gi|113887910|gb|ABI41961.1| GreA/GreB family elongation factor [Shewanella sp. MR-7] Length = 128 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 S + D++ G + LV ++ + ++V ++G S+ S + +L+G+ G+ Sbjct: 47 SEETLDKVTVGREILLVNQHDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106 Query: 139 ISVNAPGGEKTYEILQV 155 VN G + + + Sbjct: 107 AEVNILGKPVLFIVKDI 123 >gi|119946279|ref|YP_943959.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37] gi|119864883|gb|ABM04360.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37] Length = 160 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 13/135 (9%) Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEVIDISTMS-GDRIA 87 +A + A +++EN A E L +G R+AE + + ++IS S + Sbjct: 27 RAYNTATNNENVAENKYDTLALEASYLAQGQAQRVAECAQDLIAFQQLNISAASLKLSVC 86 Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGDIIS 140 GA V L + + +K Y G ++ +V+ SP+ A+ + +GD IS Sbjct: 87 LGALVLLHDLDDNEK--YVFYGPSAGGLKVQFAEKDIVVVTPGSPLGAAIKDRSVGDEIS 144 Query: 141 VNAPGGEKTYEILQV 155 + YEI ++ Sbjct: 145 LFIGNKVIEYEIAEI 159 >gi|95929275|ref|ZP_01312019.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM 684] gi|95134773|gb|EAT16428.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM 684] Length = 159 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118 R +L+ + + ++I + + + + +E G + + G + ++ Sbjct: 58 ANRAQQLKKALDVYKKLEIQSFAPYEPFYLTALVGIEYEDGRLRQLFL-GPEAGGLKVDC 116 Query: 119 ------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ AL+GK++GD++S + +K +EI+ V Sbjct: 117 DGENVVVITPGSPLCSALLGKQVGDVVS-SGRATDKEFEIISV 158 >gi|220926703|ref|YP_002502005.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] gi|219951310|gb|ACL61702.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS 2060] Length = 147 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA V + ++ V + + + +V + +S SP+ Sbjct: 40 SELERATVCPAMELPDQVVSANCRVIYRIDDEPCLRAHMLVHPCDLISPDDEISAGSPLG 99 Query: 128 RALIGKELGD 137 AL+G ++GD Sbjct: 100 IALLGLKVGD 109 >gi|332535604|ref|ZP_08411372.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis ANT/505] gi|332034988|gb|EGI71509.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis ANT/505] Length = 158 Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 7/151 (4%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 + ++ L + + A A +++EN E L +G+ + + Sbjct: 8 EHLRFALEAQLTTAKVAAKTAHDTATHEENIAENKYDTLGLEAAYLAQGQAQRVNDCYKS 67 Query: 73 AEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSGLVSISSP--- 125 E+ + + D+IA G+ V L N+ K Y G +V+ +++ +P Sbjct: 68 IELFEPAFNEKPTDKIAIGSLVCLENDNAAQKWFYLGPAAGGLTVNVKEHAIAVVTPGAP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + L+ K++ D I++ G Y ++++L Sbjct: 128 MGKQLLNKQIDDEITLTIAGKAHEYVVVEIL 158 >gi|289809959|ref|ZP_06540588.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 96 Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 RP II +A L E Y LN + RA++ M D + Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128 + V + G+ + +V S +S+ +P+AR Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVAR 96 >gi|56675424|emb|CAA83788.2| transcription elongation factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 44 Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 + + RP++I+ + EAR GDLSENA+Y AA+ Q E Sbjct: 1 KNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVEA 42 >gi|229589230|ref|YP_002871349.1| hypothetical protein PFLU1711 [Pseudomonas fluorescens SBW25] gi|229361096|emb|CAY47959.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 160 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELENIITRAEVIDISTMSG 83 R + E + + +Y + R+ E++ +T + + + Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIKQALTLCQAMALRPYDD 81 Query: 84 DR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKEL 135 R IA GA + L ++N ++ + + A ++ + ++ SP+ ++L+GK Sbjct: 82 QRGIAVGALLGLEDENG--RQQWLFLAPDAAGLKVDVVGQPVTVITPRSPLGKSLLGKFE 139 Query: 136 GDIISVNAPGGEKTYEILQ 154 GD + + G + + + + Sbjct: 140 GDEVEILVAGARQHFTVTE 158 >gi|110834982|ref|YP_693841.1| hypothetical protein ABO_2121 [Alcanivorax borkumensis SK2] gi|110648093|emb|CAL17569.1| hypothetical protein ABO_2121 [Alcanivorax borkumensis SK2] Length = 144 Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 Y A L L+ R+ E+ I ++ A G V L ++ ++ Sbjct: 17 KRYLAKTPLFFLSPVRLMEVMEKIEMLRGVES---DLAAAAVGDRVFLFSLEDEEQMSFI 73 Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 + + + + +S+ SP+ AL+G G +++V+ G Y +L+V Sbjct: 74 LAEAGKRPLDNKDLSVLSPLGAALLGSLPGAVVNVDFLGHRHRYLLLKVK 123 >gi|182415649|ref|YP_001820715.1| hypothetical protein Oter_3841 [Opitutus terrae PB90-1] gi|177842863|gb|ACB77115.1| conserved hypothetical protein [Opitutus terrae PB90-1] Length = 159 Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 18/140 (12%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENA------EYQAAKELQNLNEGRMAEL 66 +KI +LR + A EA + EN E E Q +AE Sbjct: 8 EKILSQLRADLLLQTTAAHTARDEAISEESRPENQYDTHSQEAAYLAEGQARLAAEIAES 67 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL------- 119 + + + +A GA LV + ++++ +G + ++ + Sbjct: 68 ITLYESLNL--PDLPAASPVALGA---LVALDDRGRQSWFFIGPRGGGLELQVEGRNVLV 122 Query: 120 VSISSPIARALIGKELGDII 139 ++ SP+ R L+GK + D++ Sbjct: 123 LTPQSPLGRELMGKRVDDLV 142 >gi|149191961|ref|ZP_01870191.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1] gi|148834187|gb|EDL51194.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1] Length = 158 Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 7/144 (4%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA--- 73 +L + K + A + E+ A E L G+ LE + + Sbjct: 12 AQLEQNVVTLTSAMEKTVDAATNEETVPEHKYDTLALEASYLAHGQAVRLEQVKSDIALL 71 Query: 74 -EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGLVSISSPIARA 129 +++ S D + V + +++ + + + G + +V+ SP+ RA Sbjct: 72 RKMVLNPFSSLDNVRLATVVEIEDEDEVVSRFFVLPCAGGLTIEEPTIKVVTPHSPLGRA 131 Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153 LIGK + D + V+ Y I+ Sbjct: 132 LIGKSIDDEVVVSIGEKLTHYAII 155 >gi|152996208|ref|YP_001341043.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] gi|150837132|gb|ABR71108.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1] Length = 163 Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 90 ATVSLVEKNSGDKKNYQI------VGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 T++ +E + G +K + I + + + + LV+ SP+ + L+GK +GD + + Sbjct: 91 VTLTELESSCGTEKYFFISPCAGGLTIEIIEKKVCLVTPFSPVGKKLLGKVVGDEVELLQ 150 Query: 144 PGGEKTYEILQVL 156 G + YEI + Sbjct: 151 NGKQMAYEITTIE 163 >gi|114800117|ref|YP_761046.1| regulatory protein [Hyphomonas neptunium ATCC 15444] gi|114740291|gb|ABI78416.1| regulatory protein [Hyphomonas neptunium ATCC 15444] Length = 128 Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 11/134 (8%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 Q RP I +E DL+ + + + E ++RA V + + Sbjct: 3 QITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEE---------LSRARVTAVEDVPV 53 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143 D + V+ V + +++ +V EA++ +SI + + LIG ++GD + Sbjct: 54 DVVRMHDRVNFV-YDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAG 112 Query: 144 PGGE-KTYEILQVL 156 G + E+L+V Sbjct: 113 RDGRGHSMEVLEVS 126 >gi|312959761|ref|ZP_07774277.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] gi|311285927|gb|EFQ64492.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6] Length = 160 Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELENIITRAEVIDISTMSG 83 R + E + + +Y + R+ E++ + + + + Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIKQALALCQNLQLRAYDE 81 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKELG 136 R T+ +E +G ++ + + A ++ + ++ SP+ ++L+GK + Sbjct: 82 RRGIEIGTLMGLEDENGRQQ-WLFLAPDAAGLKVDVVGQPVTVITPRSPLGKSLLGKCID 140 Query: 137 DIISVNAPGGEKTYEILQ 154 D + + G + + + + Sbjct: 141 DEVEILVAGARQHFTVTE 158 >gi|262316906|emb|CBA18133.1| putative elongation factor [Paenibacillus phage phiBP] Length = 72 Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 +T +G KI++EL + + P + + + R +G + + A E ++ +GR+ L Sbjct: 5 LTVEGVKKIKEELEYVISSKLPEVEQRLELIRKHG-----GDIKDATEERDFYKGRIPYL 59 Query: 67 ENIITRAEVI 76 EN++ A+++ Sbjct: 60 ENMLATAKIV 69 >gi|322417700|ref|YP_004196923.1| GreA/GreB family elongation factor [Geobacter sp. M18] gi|320124087|gb|ADW11647.1| GreA/GreB family elongation factor [Geobacter sp. M18] Length = 136 Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 12/102 (11%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119 R EL++ + + + + + +E G K + I G QE ++ L Sbjct: 38 ANRAQELKHALQAYRNLTLQQFNEGSSIRLTALVTLEAEDGAVKTFFI-GPQEGGLKLQL 96 Query: 120 -------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 ++ SSP+ LIGK LGD +++ G YEI+ Sbjct: 97 GGEEILVITASSPLGSELIGKCLGDEVAL----GNSRYEIVD 134 >gi|90412348|ref|ZP_01220352.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK] gi|90326610|gb|EAS43009.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK] Length = 166 Score = 41.7 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 13/160 (8%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 +DK + +++ L Q ++A + A +++EN A E L G Sbjct: 7 MDKTLL----LEQMISALEETHQGAVEAALRAYNTATNDENVAENQYDTLALEASYLAHG 62 Query: 62 ---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 R+AE E +I+ ++ + G + L++++ +K + V+ Sbjct: 63 QAQRVAECEADILAFKKLNIADDTEKKVVTLGCLIQLIDEDDNNKYVFFAPSAGGLKVRF 122 Query: 118 G-----LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +V+ +SP+ ALIG+EL D + V+ YEI Sbjct: 123 DEKDIIVVTPTSPLGEALIGRELHDDVDVHIGNQIINYEI 162 >gi|260219858|emb|CBA26810.1| hypothetical protein Csp_G38500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 209 Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 S SPIAR L+ GD + + P E+L+V + Sbjct: 167 SWISPIARTLLKAREGDELKLVMPDRVCDIEVLRVQY 203 Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAIS 35 K +T +GF ++ EL ERP+I+ + Sbjct: 31 KNYITPQGFATLRDELLDLIDNERPKIVDIVH 62 >gi|39995281|ref|NP_951232.1| hypothetical protein GSU0170 [Geobacter sulfurreducens PCA] gi|39982043|gb|AAR33505.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298504284|gb|ADI83007.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length = 160 Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV----GDQEADV 115 R E+ + +++ + + +E +G + I G + AD Sbjct: 58 ANRAQEIRQSLEAYRSLELQEFDAGAPVRLSALVTLEDEAGRTRRLFIGPQAGGMKLADP 117 Query: 116 QSGLVSIS--SPIARALIGKELGDIIS-VNAPGGEKTYEILQVL 156 +V I+ SP+ L+G GD + V+A G+ Y I+ V Sbjct: 118 AGEIVVITPASPLGNRLLGLAAGDEVQGVDAGKGKF-YTIVAVT 160 >gi|294140717|ref|YP_003556695.1| hypothetical protein SVI_1946 [Shewanella violacea DSS12] gi|293327186|dbj|BAJ01917.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 182 Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 26/152 (17%) Query: 31 IKAISEARAYGDLSENAEYQA----AKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 K E + + ++Y+ A L + R+AE + + ++++ S D I Sbjct: 31 AKQAHETATHSETVAKSKYETFGLEASYLAHGQAQRVAECNIELLAYKSLNLACFSDDII 90 Query: 87 AFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG-------------------LVSISS 124 + + +E G K I G + D++ +++ SS Sbjct: 91 IDLSALVTIEDEQGAVKTCFIGPGAGGMKIDIKLDTDIDTGAIKHGDPKLGHIIVITPSS 150 Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156 P+ + L+GK + D + + G K YEI+ V Sbjct: 151 PLGQILMGKLVYDSVQLTIGGALKHYEIISVS 182 >gi|124516047|gb|EAY57556.1| probable helicase [Leptospirillum rubarum] Length = 448 Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Query: 13 DKIQQELRWRQQEERPRII---KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +K+ L ++ +P I E ++ G N + + + AE+E Sbjct: 303 EKLISFLEDLRESWKPEHSSGEAWIEEGQSVGQPPMNPDQSIKQVETMV----QAEMERE 358 Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + +ID I G V ++ + + D +G+V+ S P+A+A Sbjct: 359 AVSSVLIDTD--DDLEIEVGDVVRYMDLAHPNDMLTVQITSGRDDFPNGIVNESRPLAQA 416 Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156 L+G +GD + ++ G +T++++++ Sbjct: 417 LLGAVVGDEVVLHLVGRPSRTFKVIEIQ 444 >gi|225569330|ref|ZP_03778355.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM 15053] gi|225162129|gb|EEG74748.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM 15053] Length = 370 Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 20/118 (16%) Query: 54 ELQNLNEGRMAELENIITRA----EVIDISTMSG--------DRIAFGATVSL------V 95 E Q L + + ++ + +V+++ + D ++ G T L Sbjct: 9 EEQELMDRSVRFTKDKLLSYDTWKKVMELPGVDCPNHISGYIDDVSMGDTKDLRLSGEPE 68 Query: 96 EKNSGDKKNYQIV-GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +G Y++ G AD +G I +A++ +GK++GD ++V+ G YEI Sbjct: 69 LDENGLFVTYELTEGKVPADGSAGGCVIPEALAKS-MGKKVGDKVTVDTALGRAEYEI 125 >gi|307200398|gb|EFN80630.1| hypothetical protein EAI_05549 [Harpegnathos saltator] Length = 1203 Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSE-----NAEYQAAKELQNLNEGRMAELE 67 +K ++EL ++ R R ++ I EAR E AE + +E + +E R E Sbjct: 306 EKKRKELERLEEMARQRELERIREAREKQRQEELERRRLAELRTKEEKRREDEARQREER 365 Query: 68 NIITRAE 74 + + Sbjct: 366 QKLNLEQ 372 >gi|50085871|ref|YP_047381.1| hypothetical protein ACIAD2826 [Acinetobacter sp. ADP1] Length = 66 Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 P + L K + D + V P G K + I + +I Sbjct: 3 PYGKNLFSKSVNDEVHVQTPTGRKIWYINSMEYI 36 >gi|182678940|ref|YP_001833086.1| DNA helicase, putative [Beijerinckia indica subsp. indica ATCC 9039] gi|182634823|gb|ACB95597.1| DNA helicase, putative [Beijerinckia indica subsp. indica ATCC 9039] Length = 1649 Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136 + S + I G V + + ++ I + D +G +S+ SP+ L+G Sbjct: 1568 EGKPPSPEGIRIGDRVIIQYLDDHKTMSFTIT-KDKEDYANGFLSVGSPLGSQLLGAVED 1626 Query: 137 DIISVNAPGGEKTYEILQ 154 + I+ G + I+Q Sbjct: 1627 EEIAFEESGRARPVLIVQ 1644 >gi|301166284|emb|CBW25859.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 159 Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 18/164 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 ++K + + D+I+ EL + A D +++ G Sbjct: 1 MNKKKLLANLIDQIKVELE-----KAKAAYDTSKSATRDPDFKSESKWDTRSIEAGYLAG 55 Query: 62 ----RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEA--- 113 R+ ELE + E + ++S + G+ V + N K Y I Sbjct: 56 AQKVRVDELEMDLNVIEELAADSLSKKPTVTIGSLVEIKFNNL--VKKYFITPAAGGYIV 113 Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 D + +S+ SPI ++ E GD V G + YEI+ Sbjct: 114 NVDDEVALTISVFSPIGNEVLDLEEGDSFEVEMNGESREYEIIS 157 >gi|37595580|gb|AAQ94634.1| RepB [Comamonas testosteroni] Length = 78 Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157 +V ++AD +G S+ S + A++G GD I + I ++L+ Sbjct: 10 DEVAVEVALVYPEDADDSAGRFSVFSGVGTAILGCREGDRIDWRILDRTRHIRIEKLLY 68 >gi|325955378|ref|YP_004239038.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922] gi|323437996|gb|ADX68460.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922] Length = 148 Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENA---EYQAAKELQNL-NEGRMAELENIITR 72 +EL+ + K I++ RA ++++ +Y+ +E+ N + + + I+ + Sbjct: 10 EELQNILLNKLNHYDKLIADLRASNTDTKSSMGDKYETFREMLNQEINHLLHQKKMILAQ 69 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARALI 131 +V++ T I + + + G+ +G+ + + +S +P+A ALI Sbjct: 70 QQVVENLTNDPHSIVDFGSFVVTD--FGNFYISTSLGEVNFNGIKFITISQQTPLANALI 127 Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 G + VN +K Y I + Sbjct: 128 GLKENQTFEVN----QKKYTIQAI 147 >gi|289677182|ref|ZP_06498072.1| hypothetical protein PsyrpsF_28108 [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 R + E + + +Y + R+ E+ +T + Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137 R + +VE G Y +G A D +++ +P+ ++L+GK D Sbjct: 83 RGIQTGDLVVVEDADGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141 Query: 138 IISVNAPGGEKTYEILQ 154 + + G ++YEI Q Sbjct: 142 AVQIVINGSRQSYEITQ 158 >gi|188585430|ref|YP_001916975.1| hypothetical protein Nther_0801 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350117|gb|ACB84387.1| hypothetical protein Nther_0801 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 303 Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138 T S I V++ + + +++ + D + +S SP+ + LIGK G+I Sbjct: 88 KTYSNQFITIEDQVTIKDLLDDNIFQFKLT-ENNKDTEIKTISPKSPVGQKLIGKTYGEI 146 Query: 139 ISVNAPG-GEKT---YEILQ 154 I V G+K Y++L Sbjct: 147 IEVEVSTIGKKELNKYKVLD 166 >gi|330897221|gb|EGH28640.1| hypothetical protein PSYJA_06464 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 160 Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 R + E + + +Y + R+ E+ +T + Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137 R + +VE G Y +G A D +++ +P+ ++L+GK D Sbjct: 83 RGIQTGDLVVVEDADGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141 Query: 138 IISVNAPGGEKTYEILQ 154 + + G ++YEI Q Sbjct: 142 AVQIVINGSRQSYEITQ 158 >gi|196232795|ref|ZP_03131646.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] gi|196223255|gb|EDY17774.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428] Length = 159 Score = 40.6 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 35 SEARAYGDLSENAEYQAAKE---LQNLNEGRMAELENIITRAEVIDIST-MSGDRIAFGA 90 EA + EN A E L ++ ELE E +D + + GA Sbjct: 30 EEATHEQNKPENKYDTRALEASYLARGQSRQLIELEKAKQEFESLDSADWPPKTPVEIGA 89 Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARALIGKELGDIISVNA 143 ++L + D ++G + ++ +++ SPI + LIGK GD I++ Sbjct: 90 LLTLKNGPAED---VYLLGPRAGGIEVVCEGTPVTVITPQSPIGQLLIGKVAGDSIALPQ 146 Query: 144 PGGEKTYEILQVL 156 ++ ++IL+V Sbjct: 147 GREQRRFKILRVQ 159 >gi|91975332|ref|YP_567991.1| hypothetical protein RPD_0852 [Rhodopseudomonas palustris BisB5] gi|91681788|gb|ABE38090.1| hypothetical protein RPD_0852 [Rhodopseudomonas palustris BisB5] Length = 156 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA VID S + V+ + ++ +V + +S+ SP+ Sbjct: 35 SELERAVVID-SPAPPLTVRLDDWVTFRADDDQPLESRILVLPGHYRRNALHLSVLSPVG 93 Query: 128 RALIGKELGDIISVNAPGGEKTY 150 AL+G G + G + Sbjct: 94 AALVGLRPGARMHYQGVDGVQHV 116 >gi|254562832|ref|YP_003069927.1| regulator [Methylobacterium extorquens DM4] gi|254270110|emb|CAX26100.1| putative regulator [Methylobacterium extorquens DM4] Length = 149 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + RA + + + ++ V + + + + + + +S++SP+ A Sbjct: 42 LKRATLCPPCALPSEVVSVNCRVLYRLDDEPGVRVHLLAHPDDLINLADGLSVASPLGTA 101 Query: 130 LIGKELGD 137 L+G +GD Sbjct: 102 LLGLRVGD 109 >gi|237799036|ref|ZP_04587497.1| hypothetical protein POR16_09402 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021890|gb|EGI01947.1| hypothetical protein POR16_09402 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 17/153 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 DK++ +L R + E + + +Y + R+ E+ Sbjct: 12 DKLEIDLD-----VAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121 +T + + R + +VE G Y +G A D +++ Sbjct: 67 SLTLYQKWSLKPFDESRGIQTGDLIIVEAQDGQTH-YLFLGPDAAGLKVSAGDQLIMVIT 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+ ++L+GK D + + G ++YEI Q Sbjct: 126 ARAPLGQSLLGKFEDDAVQIVINGTGQSYEITQ 158 >gi|154253499|ref|YP_001414323.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans DS-1] gi|154157449|gb|ABS64666.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans DS-1] Length = 171 Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113 E +L + + A ++ + ++ G+ V ++ ++ + ++ A Sbjct: 41 EQLDLLNPMQPFVRAKLEEARIVSGNEIAETVATLGSIVRYRIEDRMLERRLLQLDNRHA 100 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148 +S+ +PI AL+G+ GD+ G K Sbjct: 101 -PNGQYLSVLTPIGLALLGRSTGDLCEAELFNGAK 134 >gi|281424495|ref|ZP_06255408.1| conserved hypothetical protein [Prevotella oris F0302] gi|281401332|gb|EFB32163.1| conserved hypothetical protein [Prevotella oris F0302] Length = 1194 Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 87 AFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 G +V K + Y ++ D + ++ SP+ A+IGK+ DI+ VN Sbjct: 728 TMGPIHDIVNKQYEKAEIGQYVLIEYANGDRKVYRITSDSPLGIAVIGKKANDIVEVNLD 787 Query: 145 --GGEKTYEILQV 155 ++ +++ + Sbjct: 788 YSRRKRKVKVIGI 800 >gi|269965274|ref|ZP_06179395.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B] gi|269830075|gb|EEZ84303.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B] Length = 138 Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 68 NIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +++ E+ + +R IA G TV LV+ + +V ++ +G++++ S Sbjct: 30 RLLSLFEICEQQAHCRNRARIAVGDTVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSY 89 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+G+ D + V + + I +++ Sbjct: 90 LGARLLGRAKNDALEVEIFNQRRCFVITEIVH 121 >gi|330960528|gb|EGH60788.1| hypothetical protein PMA4326_18463 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 160 Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 12/138 (8%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSG 83 R + E + + +Y + R+ E+ + R + + Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLARYQSWSLKPFDE 81 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELG 136 R + +VE +G ++ + G A D +++ +P+ ++L+GK Sbjct: 82 SRGIQTGDLVVVEAENGQTQHLFL-GPDAAGLKVFANDRLITVITARAPLGQSLLGKLEN 140 Query: 137 DIISVNAPGGEKTYEILQ 154 D + + G ++Y I Q Sbjct: 141 DEVQIVINGSGQSYVITQ 158 >gi|289672826|ref|ZP_06493716.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. syringae FF5] Length = 49 Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 VS+ +P+ AL+G ++G I APGG+ +L V + Sbjct: 2 VSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 40 >gi|300772995|ref|ZP_07082864.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759166|gb|EFK55993.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 152 Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + + + I++ R E +++A A S +Y+ ++E+ + Sbjct: 1 MKDPLQLKERLVKHIKETTDRRLLEIDTALVQAQESANDDTKSSAGDKYETSREMIQQDI 60 Query: 61 GRMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQ 116 R+ + +I ++I+ G + + + + + Y + +G D Sbjct: 61 NRLQQQRAEVIRELDIINKIEQEGTEVGKLGALVVTD-----RFTYFVATSLGQLVIDGN 115 Query: 117 S-GLVSISSPIARALIGKELGDIISVN 142 +VS SPI + LIGKE G N Sbjct: 116 KYAVVSAQSPIGKQLIGKEKGQDFEFN 142 >gi|91787829|ref|YP_548781.1| superfamily I DNA/RNA helicase [Polaromonas sp. JS666] gi|91697054|gb|ABE43883.1| Superfamily I DNA and RNA helicases and helicase subunits-like protein [Polaromonas sp. JS666] Length = 2096 Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 + G V+ N + ++ ++ D ++ + G+V+ +P+A+AL+G GD+ + Sbjct: 2017 FVEVGDRVTYCLVNEPNDRHCVLIVDSPSNAKMGIVNEETPLAQALLGLSPGDVGELEV- 2075 Query: 145 GGEK--TYEILQVL 156 G+K +L+V Sbjct: 2076 AGQKNRQLRVLKVQ 2089 >gi|326801882|ref|YP_004319701.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21] gi|326552646|gb|ADZ81031.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21] Length = 154 Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 30/163 (18%) Query: 15 IQQELRWRQQEERPRIIKAISEARAY--------------------GDLSENAEYQAAKE 54 + +EL + + R + ++E + GD E +E Sbjct: 1 MNKELNELKTKLYKRCHEIVNERIDHAEQGICYAKDAATDDTKSSAGDKYETTREMMQQE 60 Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 + N NE ++AE + + + + ++ +S D + G+ LV+ N G +G E Sbjct: 61 I-NRNERQLAEANRLKYQLDGVSVALVS-DIVQLGS---LVQTNDGLFFLAIALGTVELS 115 Query: 115 VQSG-LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S ++S SP + ++GK +G+ ++ N +++Y+IL ++ Sbjct: 116 PYSFFVISPVSPFGQTMLGKRVGECLTFN----KRSYQILAIV 154 >gi|330953548|gb|EGH53808.1| hypothetical protein PSYCIT7_19666 [Pseudomonas syringae Cit 7] Length = 160 Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 14/130 (10%) Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91 + I+E + Y L A Y AA + + + E R + + D S I G Sbjct: 36 ENIAENK-YDTLGLEASYLAAGQARRVEEIRQSLALYRKWSLKPFDES----RGIQTGDL 90 Query: 92 VSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGDIISVNAP 144 + + +++G + +Y +G A D +++ +P+ + L+GK D + + Sbjct: 91 IVV--EDAGGQTHYLFLGPDAAGLKVSAGDQLVTVITARAPLGQNLLGKFEDDAVQIVIN 148 Query: 145 GGEKTYEILQ 154 G ++YEI Q Sbjct: 149 GSRQSYEITQ 158 >gi|213968704|ref|ZP_03396846.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301381320|ref|ZP_07229738.1| hypothetical protein PsyrptM_01738 [Pseudomonas syringae pv. tomato Max13] gi|302061489|ref|ZP_07253030.1| hypothetical protein PsyrptK_16000 [Pseudomonas syringae pv. tomato K40] gi|302130044|ref|ZP_07256034.1| hypothetical protein PsyrptN_01550 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926637|gb|EEB60190.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 160 Score = 39.0 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 DK++ +L R + E + + +Y + R+ E+ Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121 +T + + + +V+ G + Y +G A ++ +++ Sbjct: 67 SLTLYQNWSLKPFDESCGIQTGDLVVVQAQDGQTR-YLFLGPDAAGLKVNAGDRLITVIT 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+ ++L+G+ D + + G ++YEI Q Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158 >gi|218533325|ref|YP_002424140.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gi|218525628|gb|ACK86212.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 149 Score = 39.0 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA + GD I VS + + ++V VS +SP+ Sbjct: 40 SKLERAVSFNAYPPHGDVITVTCRVSYRLDDEPTVRARRLVYPSSVIASEDEVSATSPLG 99 Query: 128 RALIGKELGDIISV--NAPGGEKTYEILQV 155 A++G GD + N G E EI V Sbjct: 100 VAMLGLRRGDRMPFRDNTTGREHIVEIADV 129 >gi|77360319|ref|YP_339894.1| hypothetical protein PSHAa1376 [Pseudoalteromonas haloplanktis TAC125] gi|76875230|emb|CAI86451.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 180 Score = 39.0 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 + ++ L + + A A +++EN E L +G+ + + Sbjct: 30 EHLKFALEAQLTTAKVAAKTAHDTATHEENIAENKYDTLGLEAAYLAQGQAQRVNDCYKS 89 Query: 73 AEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSIS 123 E+ + + +IA G+ V L +++ +++ + +G + + V+ Sbjct: 90 MELFKPIFNQPASSKIAIGSLVCL--EDTNEQQKWFYLGPSAGGLTVEVKGLTIAVVTPG 147 Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +P+ + L+ K++ D IS+ + Y+I+++L Sbjct: 148 APLGKLLLNKQIDDGISLTIADVKHDYDIVEIL 180 >gi|225010462|ref|ZP_03700933.1| GreA/GreB family elongation factor [Flavobacteria bacterium MS024-3C] gi|225005291|gb|EEG43242.1| GreA/GreB family elongation factor [Flavobacteria bacterium MS024-3C] Length = 159 Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 16/120 (13%) Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 GD E E + L + R ++I + +D + + + Sbjct: 52 GDKHETGRAMIQLEREKLAQQRERNDQDI----KTLDALKNKTTTVHIAPGALV----NT 103 Query: 101 DKKNYQIVGDQEADVQSGL----VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 +Y + +A + +S SPI + L+GK+ G+ +S + ++L+VL Sbjct: 104 SLASYFLAVPADAFSHNDKKIYCISPQSPIGQLLLGKKAGESLSFRG----NSIKVLEVL 159 >gi|330877024|gb|EGH11173.1| hypothetical protein PSYMP_16256 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968157|gb|EGH68417.1| hypothetical protein PSYAC_26671 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 160 Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 17/153 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 DK++ +L R + E + + +Y + R+ E+ Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121 +T + + R + +VE G + Y +G A D +++ Sbjct: 67 SLTLYQNWSLKPFDESRGIQTGDLVVVEAQDGQTR-YLFLGPDAAGLKVSAGDRLITVIT 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+ ++L+G+ D + + G ++YEI Q Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158 >gi|51892882|ref|YP_075573.1| putative transcription elongation factor [Symbiobacterium thermophilum IAM 14863] gi|51856571|dbj|BAD40729.1| putative transcription elongation factor [Symbiobacterium thermophilum IAM 14863] Length = 154 Score = 39.0 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 83 GDRIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141 D + V+LV++ G + Y +V +E D G +S SP+ AL+ K + D + + Sbjct: 75 DDVVFMDVPVTLVDETDG-TEEVYTVVLPEEGDPAKGHISCLSPLGLALLLKRVNDRVVI 133 Query: 142 NAPGGEKTYEILQV 155 +APGG TY I V Sbjct: 134 DAPGGRFTYRIAAV 147 >gi|330980302|gb|EGH78435.1| hypothetical protein PSYAP_17438 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 160 Score = 39.0 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 12/137 (8%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 R + E + + +Y + R+ E+ +T + Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82 Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137 R + +VE SG Y +G A D +++ +P+ ++L+GK D Sbjct: 83 RGIQTGDLVVVEDVSGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141 Query: 138 IISVNAPGGEKTYEILQ 154 + + G ++YEI Q Sbjct: 142 AVQIVINGSRQSYEITQ 158 >gi|222085969|ref|YP_002544501.1| Chromosome segregation ATPase [Agrobacterium radiobacter K84] gi|221723417|gb|ACM26573.1| Chromosome segregation ATPase [Agrobacterium radiobacter K84] Length = 312 Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 11/74 (14%) Query: 12 FDKIQQELRWRQQEERPRIIK-----------AISEARAYGDLSENAEYQAAKELQNLNE 60 ++Q+EL R+Q E +I + A+S+AR DL ++E LQ+ + Sbjct: 176 HQQLQKELDRREQAELAKIKERGDMPVYQTRLALSQARQLVDLLNSSEEPGKPALQSQID 235 Query: 61 GRMAELENIITRAE 74 ++ +LE + Sbjct: 236 AKITDLEKTLEDQR 249 >gi|225155838|ref|ZP_03724324.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224803388|gb|EEG21625.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length = 193 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 21/148 (14%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSEN------AEYQAAKELQNLNEGRMAELENII 70 EL + + A EA + EN E E Q G +A I Sbjct: 40 AELEAELATQTRAALDAHDEATSEESKPENKYDMHSQEAAYLAEGQARLAGEIARA---I 96 Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-----------VGDQEADVQSGL 119 + ++T S + G+ V L + + +Y I V+ + Sbjct: 97 ESYRALSLAT-SATHVETGSLVRLEDTATRRPIHYFIGPQRGGLTLTVAARDGRSVEITV 155 Query: 120 VSISSPIARALIGKELGDIISVNAPGGE 147 ++ ++P+ R L+G LGD IS+ G+ Sbjct: 156 LTPAAPLGRQLLGHTLGDEISLPGRRGK 183 >gi|66046860|ref|YP_236701.1| hypothetical protein Psyr_3631 [Pseudomonas syringae pv. syringae B728a] gi|63257567|gb|AAY38663.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] gi|330972328|gb|EGH72394.1| hypothetical protein PSYAR_17715 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 160 Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 13/154 (8%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67 +I +L A A +++EN Y + R+ E+ Sbjct: 7 LQRIIDKLNIDLDIAERAAQTAYETATHEENIAENK-YDTLGLEASYLAAGQARRVEEIR 65 Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLV 120 +T + R + +VE SG Y +G A D ++ Sbjct: 66 QSLTLYRKWSLKPFDESRGIQTGDLVVVEDASGQTH-YLFLGPDAAGLKVSAGDHLVTVI 124 Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + +P+ + L+GK D + + G ++YEI Q Sbjct: 125 TARAPLGQNLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|28868968|ref|NP_791587.1| hypothetical protein PSPTO_1762 [Pseudomonas syringae pv. tomato str. DC3000] gi|28852208|gb|AAO55282.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|331016859|gb|EGH96915.1| hypothetical protein PLA106_12490 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 160 Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 17/153 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 DK++ +L R + E + + +Y + R+ E+ Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121 +T + + + +V+ G + Y +G A D +++ Sbjct: 67 SLTLYQNWSLKPFDESCGIQTGDLVVVQAQDGQTR-YLFLGPDAAGLKVSAGDRLITVIT 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+ ++L+G+ D + + G ++YEI Q Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158 >gi|94501322|ref|ZP_01307843.1| hypothetical protein RED65_02879 [Oceanobacter sp. RED65] gi|94426593|gb|EAT11580.1| hypothetical protein RED65_02879 [Oceanobacter sp. RED65] Length = 155 Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTM 81 E + + A + +Y Q R+ L+ I R D+ T Sbjct: 20 EHIKAAEQAHNAATHEQSKAETQYDTLGLEQAYLAHGQSERIDNLQQQIARLNHFDLRTF 79 Query: 82 S-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV---SISSPIARALIGKELGD 137 D I GA V L+ + + I+ + + +PIA+A++G + D Sbjct: 80 DEDDEIHLGAFVQLINSQTNKNLDVFILPCAGGYTLEKSIHTLTPDTPIAKAIMGLGIDD 139 Query: 138 IISVNAPGGEKTYEILQVL 156 G++ Y I +V Sbjct: 140 --EFKLGNGQR-YRITKVS 155 >gi|91228344|ref|ZP_01262272.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01] gi|91188104|gb|EAS74408.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01] Length = 138 Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 68 NIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125 +++ E+ + +R IA G V LV+ + +V ++ +G++++ S Sbjct: 30 RLLSLFEICEQQAHCRNRARIAVGDMVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSY 89 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157 + L+G+ D + V + + I +++ Sbjct: 90 LGSRLLGRAKNDALEVEIFNQRRCFVITEIVH 121 >gi|320323336|gb|EFW79424.1| hypothetical protein PsgB076_18316 [Pseudomonas syringae pv. glycinea str. B076] Length = 160 Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57 ++K V DK++ +L Q+ + A E + + A Y AA + + Sbjct: 1 MNKQDVLQSIIDKLEIDLDIAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60 Query: 58 LNEGRMAELENIITRAEVIDIST--MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + E R + + D S +GD +A A G + Y +G A + Sbjct: 61 VEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEAL--------GGQTQYLFLGPDAAGL 112 Query: 116 QSG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + +++ +P+ ++L+GK D + + G ++YEI Q Sbjct: 113 KVNAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|254562535|ref|YP_003069630.1| hypothetical protein METDI4156 [Methylobacterium extorquens DM4] gi|254269813|emb|CAX25788.1| conserved hypothetical protein, putative regulator [Methylobacterium extorquens DM4] Length = 161 Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127 + + RA + S G +A VS + ++ A +S +SP+ Sbjct: 40 SELDRAVTVAASPPLGGVVAVTCRVSYRLDDEPTVHARRLAHPSSAVGSEEEISAASPLG 99 Query: 128 RALIGKELGDIISV--NAPGGEKTYEILQVL 156 A++G GD + NA G E EI V Sbjct: 100 VAMLGLRRGDRMPFRDNATGREHVVEIADVE 130 >gi|119472680|ref|ZP_01614650.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7] gi|119444805|gb|EAW26107.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7] Length = 158 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 11/150 (7%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 ++ +L +Q + A E + +AA Q E ++I Sbjct: 13 ALEAQLNSAKQAAKAAHDAATHEESVAETQYDTLGLEAAYLAQGQAERVNDCYKSIKQFE 72 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPI 126 + T +++ + V L ++N+ K Y +G + +V+ +P+ Sbjct: 73 TIFKEPT--HNKVIISSLVCLEDENALQKWFY--LGPAAGGLTVEVKGQTIQVVTPEAPL 128 Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156 + L+GK+L D +S++ G Y+++++L Sbjct: 129 GKQLLGKQLDDEVSLSIAGKNHEYDVVEIL 158 >gi|221134409|ref|ZP_03560714.1| hypothetical protein GHTCC_05724 [Glaciecola sp. HTCC2999] Length = 84 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPIARALIGKE 134 D I GA V ++++N + + + ++ ++S SP+ + L+GKE Sbjct: 5 DIDIITIGALVEIIDQN--ETSLWVFLAPVSGGIKFEFKQRKIMVISTHSPLGKQLLGKE 62 Query: 135 LGDIISVNAPGGEKTYEILQ 154 GD +S+ Y I Sbjct: 63 TGDELSIGLGARSTQYRITD 82 >gi|91975071|ref|YP_567730.1| DNA helicase, putative [Rhodopseudomonas palustris BisB5] gi|91681527|gb|ABE37829.1| DNA helicase, putative [Rhodopseudomonas palustris BisB5] Length = 1629 Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114 Q + + R E+ EV S I G ++ + + ++ + D Sbjct: 1525 EQRVADAR---NESKAKSDEVGVAGVRSESGIKIGDSIVVRYLDDNKTSSFVL-SRDRHD 1580 Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 +GL+ + + ++G D I V G + I+ Sbjct: 1581 PVNGLIGADTAFGKQILGFSEEDEIEVEDAGRSRRLLIV 1619 >gi|330884767|gb|EGH18916.1| transcription elongation factor GreB [Pseudomonas syringae pv. glycinea str. race 4] Length = 31 Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157 AL+ KE GD + VN P GEK + + +++ Sbjct: 1 ALLKKEEGDEVLVNTPEGEKLWFVNSIVY 29 >gi|189426066|ref|YP_001953243.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] gi|189422325|gb|ACD96723.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ] Length = 160 Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGDQEA 113 R E+ + + + + D + +E G+++ + + A Sbjct: 58 ANRAQEIRVALEGYRNLVLQDFNDDSPIRLTALVTLEDEEGNQRRLFLGPYGGGMKIPVA 117 Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 D + +++ SP+ R+L+GK++GD + + ++QV+ Sbjct: 118 DGEIVVITPGSPLGRSLLGKQVGDELQAEEHALTAAFTVVQVV 160 >gi|260430961|ref|ZP_05784932.1| lipoprotein releasing system transmembrane protein LolE [Silicibacter lacuscaerulensis ITI-1157] gi|260414789|gb|EEX08048.1| lipoprotein releasing system transmembrane protein LolE [Silicibacter lacuscaerulensis ITI-1157] Length = 428 Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 15/111 (13%) Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN-------Y 105 + Q + +A + + R + + + ++ +++SG + Sbjct: 80 IDAQGRVDRTIANYDAMAERIAQVPGVQRAAPLVKGQVLITNRDRSSGAEVFGIRPDDLL 139 Query: 106 QIVGDQEADVQSG-------LVSISSPIARALIGKELGDIISVNAPGGEKT 149 + G E+D G ++I S +ARA IG +GD + + +P G KT Sbjct: 140 SLPGIAESDQAYGDLTRFEEGIAIGSGVARA-IGATVGDRVKLTSPNGVKT 189 >gi|239608499|gb|EEQ85486.1| predicted protein [Ajellomyces dermatitidis ER-3] Length = 430 Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 4 KIPVTSKGFDKIQQELRWRQQEERP-----RIIKAISEARAYGDL--SENAEYQAAKELQ 56 K+P+T + + + +E++ + EER ++++ EA G N + L+ Sbjct: 118 KVPMTMEEDNALVKEIKHLKGEERRLKGVIKVLEEDKEAMQLGQDHIKRNPVLANIQGLR 177 Query: 57 NLNEGRMAELENIITRAEVIDISTMSG 83 + E ++ +E++ T G Sbjct: 178 HHLEELTRAPNKALSSSEILPEVTTPG 204 >gi|254509482|ref|ZP_05121549.1| lipoprotein releasing system transmembrane protein LolE [Rhodobacteraceae bacterium KLH11] gi|221533193|gb|EEE36181.1| lipoprotein releasing system transmembrane protein LolE [Rhodobacteraceae bacterium KLH11] Length = 487 Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%) Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86 R + I A A+ + + A Q + +A+ + + R + + + Sbjct: 117 RSEFVGTILGANAHVSVYSAGDLNA----QGRLDRTIADFDAMAERVAQVPGVERAAPLV 172 Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQ---------------SGLVSISSPIARALI 131 ++ ++++G + + I D D+ ++I S +ARA I Sbjct: 173 KGQVLITNADRSTG-VQVFGIRPDDLNDLPGIAESEQAYGDLSRFPDGIAIGSGVARA-I 230 Query: 132 GKELGDIISVNAPGGEKT 149 G +GD + + +P G KT Sbjct: 231 GATVGDRVKLTSPNGVKT 248 >gi|88859698|ref|ZP_01134338.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2] gi|88818715|gb|EAR28530.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2] Length = 161 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 27/43 (62%) Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 A + +++ S+P+ AL+GK L D +++ G ++T+ I +V Sbjct: 118 AGQKVTVITPSAPLGAALVGKYLDDEVTIMVAGKKQTWSIDKV 160 >gi|332526113|ref|ZP_08402251.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2] gi|332109956|gb|EGJ10584.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2] Length = 25 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 135 LGDIISVNAPGGEKTYEILQVLWI 158 GD+ V APGG + +EI++V ++ Sbjct: 2 AGDVAEVQAPGGVRHWEIVEVKYL 25 >gi|152988368|ref|YP_001349710.1| hypothetical protein PSPA7_4357 [Pseudomonas aeruginosa PA7] gi|150963526|gb|ABR85551.1| hypothetical protein PSPA7_4357 [Pseudomonas aeruginosa PA7] Length = 169 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 16/138 (11%) Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84 R + E+ + + +Y R+ E+ + + + + Sbjct: 34 RAAQTAHESATHEENVAENKYDTLGLEAAYLAAGQSRRVEEIRQALNLYRNLALRDFDEE 93 Query: 85 R-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELG 136 + I A V+L+ + + + +G A ++ +++ SP+ ++L+GK+ G Sbjct: 94 QGIQLSALVTLLNTDGSRRVVF--LGPAAAGLKVDCEGREVLVITPRSPLGQSLLGKQPG 151 Query: 137 DIISVNAPGGEKTYEILQ 154 D P + EIL Sbjct: 152 DTAGPKDP--RQAVEILA 167 >gi|188583385|ref|YP_001926830.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] gi|179346883|gb|ACB82295.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001] Length = 149 Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 S D +A V + + +++V +S +S + A++G GD Sbjct: 50 ASPPPRDVVAVTCRVRYRLDDEPTVRAHRLVYPGHVIASEEEISAASALGVAMLGLRRGD 109 Query: 138 IISV--NAPGGEKTYEILQV 155 I NA G E EI V Sbjct: 110 RIPFRDNATGSEHVVEIADV 129 >gi|302187682|ref|ZP_07264355.1| hypothetical protein Psyrps6_15104 [Pseudomonas syringae pv. syringae 642] Length = 160 Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 17/153 (11%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68 +K++ +L R + E + + +Y + R+ E+ Sbjct: 12 EKLKIDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66 Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121 + + R + +VE G + G A ++ +++ Sbjct: 67 SLALYRKWPLKPFDESRGIQTGDLVVVEDAGGQTHCLFL-GPDAAGLKVSEGNRLVTVIT 125 Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +P+ ++L+GK D + + G ++YEI Q Sbjct: 126 ARAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|302690308|ref|XP_003034833.1| hypothetical protein SCHCODRAFT_232138 [Schizophyllum commune H4-8] gi|300108529|gb|EFI99930.1| hypothetical protein SCHCODRAFT_232138 [Schizophyllum commune H4-8] Length = 1576 Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 9/126 (7%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR----AYGDLSENAEYQAAKELQNL 58 K + + D I + RQ R + A AR + +++ Y A +E Q Sbjct: 119 RKRKLAQEALDAIDADPEVRQATRRKHVGAAEPIARPAALEHLPVTKTG-YTAKREPQR- 176 Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118 GR + V S D + + ++ GD++ + I+ + A + G Sbjct: 177 --GRAQHRTYRLEDM-VGPDSMYKFDLVRWEGRKTVPYVTPGDERVFMILAGRPAPPEGG 233 Query: 119 LVSISS 124 +S Sbjct: 234 ATEANS 239 >gi|289626936|ref|ZP_06459890.1| hypothetical protein PsyrpaN_17614 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649421|ref|ZP_06480764.1| hypothetical protein Psyrpa2_17003 [Pseudomonas syringae pv. aesculi str. 2250] gi|330866114|gb|EGH00823.1| hypothetical protein PSYAE_02442 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 160 Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 ++K V DK++ +L R + E + + +Y + Sbjct: 1 MNKQDVLQSIIDKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAA 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117 R+ E+ + + R + VE SG + Y +G A ++ Sbjct: 56 GQARRVEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEALSGQTQ-YLFLGPDAAGLKV 114 Query: 118 G-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +++ +P+ ++L+GK D + + G ++YEI Q Sbjct: 115 SAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|330950317|gb|EGH50577.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7] Length = 31 Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 18/31 (58%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIK 32 + K P+T +G +++EL + RP++ + Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQ 31 >gi|163754512|ref|ZP_02161634.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1] gi|161325453|gb|EDP96780.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1] Length = 149 Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 10/143 (6%) Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77 E+ +Q+ I EA S + E +L N + + + Sbjct: 13 EIVNNRQKTVQESFARIQEAMLSETKSSAGDKHETGRAMLQLERE--KLGNQLAEIQKVK 70 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGL-VSISSPIARALIGK 133 D A + L + NY I VG+ A+ + ++ ++PI + L+GK Sbjct: 71 EILHKVDAAATVSQGCLGSVIYTSQANYFISVSVGEITANNEKFYAIATNTPIGKLLLGK 130 Query: 134 ELGDIISVNAPGGEKTYEILQVL 156 ++ DII+ +++ I ++ Sbjct: 131 KVDDIITFR----NQSFVIEKIS 149 >gi|163751718|ref|ZP_02158936.1| transcription elongation factor [Shewanella benthica KT99] gi|161328370|gb|EDP99529.1| transcription elongation factor [Shewanella benthica KT99] Length = 194 Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 95 VEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIARALIGKELGDIISVNAPGGEKT 149 ++ + + + + +++ SSP+ + L+GK L D + +N K Sbjct: 128 IDLETDKNTDIDLAAVCHKNSNKEQLMITVITPSSPLGQLLMGKYLDDSVRLNIGEQPKV 187 Query: 150 YEILQVL 156 YEI V Sbjct: 188 YEITGVE 194 >gi|71733605|ref|YP_275793.1| hypothetical protein PSPPH_3651 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554158|gb|AAZ33369.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327533|gb|EFW83545.1| hypothetical protein PsgRace4_23943 [Pseudomonas syringae pv. glycinea str. race 4] gi|330876663|gb|EGH10812.1| hypothetical protein Pgy4_09963 [Pseudomonas syringae pv. glycinea str. race 4] Length = 160 Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57 ++K V DK++ +L Q+ + A E + + A Y AA + + Sbjct: 1 MNKQDVLQSIIDKLEIDLDIAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60 Query: 58 LNEGRMAELENIITRAEVIDIST--MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + E R + + D S +GD +A A G + Y +G A + Sbjct: 61 VEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEAL--------GGQTQYLFLGPDAAGL 112 Query: 116 QSG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 + +++ +P+ ++L+GK D + + G ++YEI Q Sbjct: 113 KVSAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|13473407|ref|NP_104974.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium loti MAFF303099] gi|14024156|dbj|BAB50760.1| nucleoside diphosphate kinase regulator; Rnk [Mesorhizobium loti MAFF303099] Length = 180 Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 9/108 (8%) Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 + E R A LE+ ++ A+V+ I T+ D + + V ++G + +V + Sbjct: 19 MLERRRAFADPIVHVLEHKLSSADVVPIDTVGPDIVTLNSRVVFS-IDAGHAQTRTLVQN 77 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + +S+++ ++G G S+ G + I VL+ Sbjct: 78 EVRGPVGSSLSVATRRGLCMLGMAQGQTASIEHADGRRESILIKAVLY 125 >gi|319780960|ref|YP_004140436.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166848|gb|ADV10386.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 184 Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110 + E R A LE+ +++AEV+ I ++ D + + + ++G + +V + Sbjct: 23 MLERRRAFADPIVPMLEDKLSKAEVVAIDSVGSDIVTLNSRLVFR-VDAGPAQTRTLVQN 81 Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157 + +SI + ++G G + G + I VL+ Sbjct: 82 EVRGPVGSSLSIMTRRGLCMLGMAEGQTAWIEQADGRRESVLIATVLY 129 >gi|260901412|ref|ZP_05909807.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308107211|gb|EFO44751.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|328471242|gb|EGF42144.1| hypothetical protein VP10329_03517 [Vibrio parahaemolyticus 10329] Length = 138 Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 38/73 (52%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 RIA G TV LV+ + + +V +++ +G++++ S + L+G+ +++ + Sbjct: 49 RIAIGDTVRLVDLDRSYQYRMTLVDSRKSQPLAGMLAVDSYLGSRLLGRSQDEVLELEIF 108 Query: 145 GGEKTYEILQVLW 157 + + I +++ Sbjct: 109 NQRRCFVITEIIH 121 >gi|262392779|ref|YP_003284633.1| hypothetical protein VEA_002005 [Vibrio sp. Ex25] gi|262336373|gb|ACY50168.1| hypothetical protein VEA_002005 [Vibrio sp. Ex25] Length = 138 Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 RIA G TV LV+ + +V ++ +G++++ S + L+G+ D + Sbjct: 49 RIAVGDTVRLVDVERAYQYRMTLVNSHKSQPMTGMLAVDSYLGSRLLGRAKNDAFEIEIF 108 Query: 145 GGEKTYEILQVLW 157 + + I +++ Sbjct: 109 NQRRCFVITEIVH 121 >gi|225012479|ref|ZP_03702915.1| GreA/GreB family elongation factor [Flavobacteria bacterium MS024-2A] gi|225003456|gb|EEG41430.1| GreA/GreB family elongation factor [Flavobacteria bacterium MS024-2A] Length = 148 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 15/144 (10%) Query: 18 ELRWRQQEERPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEV 75 E + EE+ ++++ +SE+++ + + ++AELE + Sbjct: 15 EAKRLLLEEQKKVLQGALMSESKSSAGDKHETGRAMVQLDREKLGNQIAELEQNQQKLNT 74 Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ--EADVQSGL-VSISSPIARALIG 132 + + ++ G+ V + + Y + E D + +S SPI + LIG Sbjct: 75 LKNHKTTTS-VSLGSVVL-----TDKENYYISIATNFCEIDAKKYYCISAQSPIGKLLIG 128 Query: 133 KELGDIISVNAPGGEKTYEILQVL 156 K++ D I N ++ IL++ Sbjct: 129 KKVNDKIEFN----KRLSTILEIR 148 >gi|269928504|ref|YP_003320825.1| hypothetical protein Sthe_2589 [Sphaerobacter thermophilus DSM 20745] gi|269787861|gb|ACZ40003.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 1164 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRM 63 + VT +G++ +++E R E R R + EAR L E A Y AA+ + R+ Sbjct: 180 VRVTREGYEHLRRE-EARLDELRER-AQRAMEARDRAALLEQALAYAAARRTLDEARERL 237 Query: 64 AELENIITR 72 A ++ R Sbjct: 238 ATFPEVLAR 246 >gi|257485831|ref|ZP_05639872.1| hypothetical protein PsyrptA_21361 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986650|gb|EGH84753.1| hypothetical protein PLA107_16617 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012920|gb|EGH92976.1| hypothetical protein PSYTB_25299 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 160 Score = 36.3 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 19/165 (11%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 ++K V DK++ +L R + E + + +Y + Sbjct: 1 MNKQDVLQSIIDKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAA 55 Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQ 116 R+ E+ + S D T L+ + G + Y +G A ++ Sbjct: 56 GQARRVEEIRQSLAAYR--KWSLKPFDESRGIQTGDLIAVEALGGQTQYLFLGPDAAGLK 113 Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 +++ +P+ ++L+GK D + + G ++YEI Q Sbjct: 114 VSAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158 >gi|255292504|dbj|BAH89619.1| UvrD/Rep helicase family protein [uncultured bacterium] gi|255292794|dbj|BAH89898.1| UvrD/Rep helicase family protein [uncultured bacterium] gi|255293040|dbj|BAH90135.1| UvrD/Rep helicase family protein [uncultured bacterium] Length = 909 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +V +G+++ Y I L S +P+ R L +G P G E+ Sbjct: 82 VVVVDEAGEERTYYICRTSPVSGFPNLASYRAPVGR-LASLAIG--AEFTLPNGTV-VEV 137 Query: 153 LQ 154 L+ Sbjct: 138 LE 139 >gi|229817908|ref|ZP_04448190.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM 20098] gi|229784512|gb|EEP20626.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM 20098] Length = 44 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 25/35 (71%) Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41 +T + +DK+Q+EL+WR+ E R II +S ARA G Sbjct: 10 LTQEAYDKMQEELKWREGEYRDEIIAKVSAARAEG 44 >gi|84499275|ref|ZP_00997563.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597] gi|84392419|gb|EAQ04630.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597] Length = 1334 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 ++ T ++ N+ D I ++ +A+ L+GK++GD I + Sbjct: 808 QVVEPDTAVVLSGNNRDDIVRIIEAAPAPQSTRDEIAPDDALAQRLMGKKVGDQIEMEGL 867 Query: 145 GGEKTYEILQVL 156 G I +++ Sbjct: 868 NGPYALTIKEIV 879 >gi|322829088|gb|EFZ32636.1| hypothetical protein TCSYLVIO_1016 [Trypanosoma cruzi] Length = 668 Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61 +K+ + +G + Q+EL + ER + + E AR + E +AA+E Q E Sbjct: 570 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAGMREEKVRKAAEEQQRKVEE 628 Query: 62 RMAEL 66 R++ Sbjct: 629 RLSRF 633 >gi|198429125|ref|XP_002121936.1| PREDICTED: similar to Serine/threonine-protein kinase QSK (Salt-inducible kinase 3) (SIK-3) (SIK3) [Ciona intestinalis] Length = 1424 Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN- 59 +VDK + + KI +E+ ++ P IIK + L EY ++ E+ + Sbjct: 59 IVDKTQLDKENLKKIYREIEIMKELRHPHIIKLYQVMQTENKLFLVTEYASSGEIFDHLV 118 Query: 60 -EGRMAELENIITRAEVI 76 GRMAE E I +++ Sbjct: 119 AHGRMAEREARIKFKQIV 136 >gi|296283928|ref|ZP_06861926.1| hypothetical protein CbatJ_09906 [Citromicrobium bathyomarinum JL354] Length = 187 Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 12 FDKIQQELRWRQQEE-------------RPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 ++++ L ++E R R+ + + AR D NAE A E Sbjct: 69 LAQLRERLDEVERERDLLETALSSATDARGRLERDLRTAREEADSRSNAEASAQAERIAT 128 Query: 59 NEGRMAELENIITRAE 74 E R A+L++ + A+ Sbjct: 129 LEKRCADLQHRLEDAQ 144 >gi|110639694|ref|YP_679904.1| hypothetical protein CHU_3322 [Cytophaga hutchinsonii ATCC 33406] gi|110282375|gb|ABG60561.1| hypothetical protein CHU_3322 [Cytophaga hutchinsonii ATCC 33406] Length = 150 Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 21 WRQQEERPRIIKAISEARAY-----GDLSENAEYQAAKELQNLNEGRMAELENIITRAEV 75 R + I K S A GD E A E++ N +++E E + + Sbjct: 18 ERITRLKTEIKKTQSSANEETKSSAGDKYETGRAMAQLEIEK-NTKQLSEAEKLEGMMQA 76 Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135 I +S + I G+ V+ + + I D Q +++ SPI + +GK+ Sbjct: 77 IVTDRIS-EIIIPGSLVTTSKGIF--YISISIGLITFQDKQYFIIAPDSPIGKLFMGKKT 133 Query: 136 GDIISVN 142 GD +S N Sbjct: 134 GDTVSWN 140 >gi|313105977|ref|ZP_07792238.1| hypothetical protein PA39016_000130013 [Pseudomonas aeruginosa 39016] gi|310878740|gb|EFQ37334.1| hypothetical protein PA39016_000130013 [Pseudomonas aeruginosa 39016] Length = 158 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%) Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64 +++L E+ ++A A EN +Y R+ Sbjct: 3 KKQLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62 Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118 E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120 Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++LIG+ GD A EIL V Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157 >gi|262199267|ref|YP_003270476.1| hypothetical protein Hoch_6108 [Haliangium ochraceum DSM 14365] gi|262082614|gb|ACY18583.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365] Length = 174 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 21/34 (61%) Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 +V+ +P+ + L+G+ +GD + + PGG + + Sbjct: 137 VVTPEAPVGKLLLGRRVGDELHLPGPGGGREVVV 170 >gi|256077824|ref|XP_002575200.1| heart-specific myosin light chain phosphatase small subunit [Schistosoma mansoni] gi|238660431|emb|CAZ31433.1| heart-specific myosin light chain phosphatase small subunit, putative [Schistosoma mansoni] Length = 200 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE--LQNLNEGRMAELENI 69 + ++ +E + R + A E + D EN+ + Q E R++E E Sbjct: 109 YKQLYEEEKILTNGLREEVKAAQKELKELEDALENSVGRRRPSEVEQRKMERRISECEQE 168 Query: 70 IT 71 + Sbjct: 169 LK 170 >gi|319794569|ref|YP_004156209.1| hypothetical protein Varpa_3924 [Variovorax paradoxus EPS] gi|315597032|gb|ADU38098.1| hypothetical protein Varpa_3924 [Variovorax paradoxus EPS] Length = 894 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 93 SLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150 +V NSG+++ Y + ++ L+S SP+ A+ +E+GD + P G Sbjct: 82 VVVVDNSGEERTYYVCRTSPPTGLRVPLISYRSPVG-AMASREVGDRFT--LPNGNVVV 137 >gi|305665869|ref|YP_003862156.1| hypothetical protein FB2170_06295 [Maribacter sp. HTCC2170] gi|88710644|gb|EAR02876.1| hypothetical protein FB2170_06295 [Maribacter sp. HTCC2170] Length = 152 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 20/135 (14%) Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEG-----RMAELENIITRAEVIDISTMSGDR 85 IK + EA S + E ++AE+E + +DI+T Sbjct: 29 IKEVHEALGSETKSSAGDKHETGRAMLQLEREKLGTQLAEVEKMAKIINKVDITTKKDSA 88 Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VSISSPIARALIGKELGDIISV 141 + D NY + + +S+++PI L+GK++ D+I Sbjct: 89 SLGSLVCT-------DSSNYFLAISAGEYKSTEKRTYCISMNTPIGIILLGKKVDDVIDF 141 Query: 142 NAPGGEKTYEILQVL 156 N +ILQVL Sbjct: 142 NG----NQIKILQVL 152 >gi|330889328|gb|EGH21989.1| hypothetical protein PSYMO_10970 [Pseudomonas syringae pv. mori str. 301020] Length = 160 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 14/139 (10%) Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSG 83 R + E + + +Y + R+ E+ + S Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLAAYR--KWSLKPF 79 Query: 84 DRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKEL 135 D T L+ + G + Y +G A ++ +++ +P+ ++L+GK Sbjct: 80 DESRGIQTGDLIAVEALGGQTQYLFLGPDAAGLKVSAGEQLVTVITAKAPLGQSLLGKFE 139 Query: 136 GDIISVNAPGGEKTYEILQ 154 D + + G ++YEI Q Sbjct: 140 DDAVQIVINGSGQSYEITQ 158 >gi|294954226|ref|XP_002788062.1| calpain, putative [Perkinsus marinus ATCC 50983] gi|239903277|gb|EER19858.1| calpain, putative [Perkinsus marinus ATCC 50983] Length = 919 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 9 SKGFD-KIQQELRWRQQEERPRIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMAEL 66 G + K++++ + R+ E+ KA +E R +E A Y +++ R+ Sbjct: 800 QAGRERKMREQRQRREAVEQHAEEKAKAEMKRRQQKAAERAAYLTSRDRLTEKLKRVNPK 859 Query: 67 EN-----IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104 ++R EVI ST+S + + + + +++ Sbjct: 860 AYGIVLSRMSREEVIKYSTISDKEVLIHLVETKMNGDKEEEQT 902 >gi|302791028|ref|XP_002977281.1| hypothetical protein SELMODRAFT_176144 [Selaginella moellendorffii] gi|300155257|gb|EFJ21890.1| hypothetical protein SELMODRAFT_176144 [Selaginella moellendorffii] Length = 435 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%) Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 ++GD + + +S S + R L ++GD I+V GE+T +I Sbjct: 381 LVLGDIITSINNQKISNGSDLYRVLDRCKVGDKITVEVLRGEETVKI 427 >gi|302821006|ref|XP_002992168.1| hypothetical protein SELMODRAFT_134817 [Selaginella moellendorffii] gi|300140094|gb|EFJ06823.1| hypothetical protein SELMODRAFT_134817 [Selaginella moellendorffii] Length = 413 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%) Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 ++GD + + +S S + R L ++GD I+V GE+T +I Sbjct: 359 LVLGDIITSINNQKISNGSDLYRVLDRCKVGDKITVEVLRGEETVKI 405 >gi|71664421|ref|XP_819191.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884482|gb|EAN97340.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 784 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61 +K+ + +G + Q+EL + ER + + E AR ++ E +AA+E Q E Sbjct: 575 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQRKVEE 633 Query: 62 RMAEL 66 R++ Sbjct: 634 RLSRF 638 >gi|313672008|ref|YP_004050119.1| hypothetical protein Calni_0040 [Calditerrivibrio nitroreducens DSM 19672] gi|312938764|gb|ADR17956.1| protein of unknown function DUF214 [Calditerrivibrio nitroreducens DSM 19672] Length = 837 Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 G + GD I ++ P G+ ++I +V Sbjct: 605 GLKEGDTIEIDTPKGKVKFKIREV 628 >gi|195997991|ref|XP_002108864.1| hypothetical protein TRIADDRAFT_52286 [Trichoplax adhaerens] gi|190589640|gb|EDV29662.1| hypothetical protein TRIADDRAFT_52286 [Trichoplax adhaerens] Length = 750 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 17/137 (12%) Query: 2 VDKIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58 +KI + +GF+ +EL + E R + E + A +Q + + Sbjct: 579 SEKIELLQKNIEGFETSNRELELQLIEHRRMVEDEKQERTKLKEAIRGAVFQERDKWERE 638 Query: 59 NEGRMA------------ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106 + R+ E + E+++ + + S+ + ++K Sbjct: 639 CDKRVKASQLQMKSKLWETDEKLRLLKEIVESTPTKRKSVGVNVLSSIDKLEEKERKRKS 698 Query: 107 IVGDQEADVQSGLVSIS 123 + ADV +SI+ Sbjct: 699 --SESSADVDENSISIT 713 >gi|227537169|ref|ZP_03967218.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242884|gb|EEI92899.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 136 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 M D + + I+Q R E +++A A S +Y+ ++E+ + Sbjct: 1 MKDPLQLKENLVKHIKQATDRRLLEIDTALVQAQESANDDTKSSAGDKYETSREMIQQDI 60 Query: 61 GRMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQ 116 R+ + +I ++I+ G + + + + + Y + +G D Sbjct: 61 NRLQQQRAEVIRELDIINKIEPEGAEVGKLGALVVTD-----RFTYFVATSLGQLVIDGD 115 Query: 117 S-GLVSISSPIARALIGKELG 136 +VS SPI + LIGK G Sbjct: 116 KYAVVSAQSPIGKQLIGKGKG 136 >gi|291280251|ref|YP_003497086.1| ABC transporter permease [Deferribacter desulfuricans SSM1] gi|290754953|dbj|BAI81330.1| ABC transporter, permease [Deferribacter desulfuricans SSM1] Length = 833 Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 17/24 (70%) Query: 132 GKELGDIISVNAPGGEKTYEILQV 155 G ++GD I ++ P G++ ++I ++ Sbjct: 601 GLKVGDFIEIDTPKGKEKFKIREI 624 >gi|196231498|ref|ZP_03130356.1| protein of unknown function DUF1549 [Chthoniobacter flavus Ellin428] gi|196224351|gb|EDY18863.1| protein of unknown function DUF1549 [Chthoniobacter flavus Ellin428] Length = 773 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65 P+T + + +Q + + +R Y D + NA ++ + Q E ++AE Sbjct: 365 PITQEDYYSLQADFAALDRTDRKY----------YRDDATNARFRELQRRQQQVESQLAE 414 Query: 66 LENII 70 LE + Sbjct: 415 LEKPL 419 >gi|71423067|ref|XP_812329.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70877099|gb|EAN90478.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 780 Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61 +K+ + +G + Q+EL + ER + + E AR ++ E +AA+E Q E Sbjct: 571 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQQKVEE 629 Query: 62 RMAEL 66 R++ Sbjct: 630 RLSRF 634 >gi|126662004|ref|ZP_01733003.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38] gi|126625383|gb|EAZ96072.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38] Length = 149 Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 VS SP+ L+GK LGD + +NA ++I + Sbjct: 117 VSPQSPLGSQLLGKSLGDEVVINA----NRFQIKSIQ 149 >gi|49080842|gb|AAT50064.1| PA1026 [synthetic construct] Length = 159 Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK + +K+ +L R + E + + +Y Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55 Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 56 GQSRRVEEIRRALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113 Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++LIG+ GD A EIL V Sbjct: 114 IDCEGREVLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157 >gi|258622962|ref|ZP_05717977.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258584745|gb|EEW09479.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 140 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + + RI G TVSLV+ + +V + D G V+ S + AL G+ + Sbjct: 44 PTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGRRQHE 103 Query: 138 IISVNAPGGEKTYEILQVLWI 158 + ++ G + I V I Sbjct: 104 VFELSIWGQRHCFAITHVKHI 124 >gi|258626086|ref|ZP_05720937.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262172782|ref|ZP_06040460.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451] gi|258581612|gb|EEW06510.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|261893858|gb|EEY39844.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451] Length = 140 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%) Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137 + + RI G TVSLV+ + +V + D G V+ S + AL G+ + Sbjct: 44 PTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGRRQHE 103 Query: 138 IISVNAPGGEKTYEILQVLWI 158 + ++ G + I V I Sbjct: 104 VFELSIWGQRHCFAITHVKHI 124 >gi|268324327|emb|CBH37915.1| hypothetical secreted protein [uncultured archaeon] Length = 524 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 6/114 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++I E+ Q + ++ EY+ A ++ NEG E + Sbjct: 234 NRIDAEVYMLMQAKLGKLDDEELGITFDAPRGTKQEYEKAIYVRVTNEG----DEKMAFS 289 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVSISS 124 +++I+ + I+ + + V+ + + QI A G + I + Sbjct: 290 SKIIEPREIDMKIISVYSGLVEVDGKADEDVEIQITAPYYASEATHHGKLQIDA 343 >gi|195119902|ref|XP_002004468.1| GI19951 [Drosophila mojavensis] gi|193909536|gb|EDW08403.1| GI19951 [Drosophila mojavensis] Length = 2411 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 13 DKIQQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 ++++EL + ++E+R + + + E + + + + KE Q L E + + E Sbjct: 1330 QRLKEELRLKEEQRLKEEQRLKEEQRLKEEQRLKEEQRLKDEERLKEEQRLKEEQRLKEE 1389 Query: 68 NIITRAE 74 + + Sbjct: 1390 QRLKEEQ 1396 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 ++++E + ++E+R + + + E + D E Q KE Q L E + + E + Sbjct: 1342 QRLKEE-QRLKEEQRLKEEQRLKEEQRLKDEERLKEEQRLKEEQRLKEEQRLKEEQL 1397 >gi|77550642|gb|ABA93439.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 692 Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL-NEGRMA 64 P T ++++Q E+ + + + I+EAR S N E RM+ Sbjct: 356 PATVLTWEELQVEMGCLLEAGARGVSREIAEARVAAGSSANERADRLARDLAEGLEHRMS 415 Query: 65 ELENIITRAE 74 ELEN ++ Sbjct: 416 ELENKLSEIR 425 >gi|15596223|ref|NP_249717.1| hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1] gi|107100470|ref|ZP_01364388.1| hypothetical protein PaerPA_01001495 [Pseudomonas aeruginosa PACS2] gi|218893012|ref|YP_002441881.1| hypothetical protein PLES_42971 [Pseudomonas aeruginosa LESB58] gi|254239383|ref|ZP_04932706.1| hypothetical protein PACG_05582 [Pseudomonas aeruginosa C3719] gi|9946938|gb|AAG04415.1|AE004535_2 hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1] gi|126171314|gb|EAZ56825.1| hypothetical protein PACG_05582 [Pseudomonas aeruginosa C3719] gi|218773240|emb|CAW29052.1| hypothetical protein PLES_42971 [Pseudomonas aeruginosa LESB58] Length = 158 Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK + +K+ +L R + E + + +Y Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55 Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 56 GQSRRVEEIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113 Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++LIG+ GD A EIL V Sbjct: 114 IDCEGREVLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157 >gi|257055412|ref|YP_003133244.1| sortase (surface protein transpeptidase) [Saccharomonospora viridis DSM 43017] gi|256585284|gb|ACU96417.1| sortase (surface protein transpeptidase) [Saccharomonospora viridis DSM 43017] Length = 226 Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%) Query: 98 NSGDKKNYQIV-GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153 + G ++ +V G +G P A AL G +GD ++V P G + Y ++ Sbjct: 120 DFGAERGVSLVAGHVNWHGTNG------PFA-ALWGHRVGDEVTVRDPEGREWVYRVV 170 >gi|296390614|ref|ZP_06880089.1| hypothetical protein PaerPAb_20771 [Pseudomonas aeruginosa PAb1] Length = 158 Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%) Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64 +++L E+ ++A A EN +Y R+ Sbjct: 3 KKQLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62 Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118 E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120 Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++LIG+ GD A EIL V Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSLLAVEILAV 157 >gi|289620284|emb|CBI53142.1| unnamed protein product [Sordaria macrospora] Length = 528 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +K ++ ++E P+++ R + E EY GR E Sbjct: 174 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 222 Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123 I E + + + G V +++ +G + + G + +G S Sbjct: 223 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRESED 280 >gi|149204748|ref|ZP_01881712.1| hypothetical protein RTM1035_01090 [Roseovarius sp. TM1035] gi|149141857|gb|EDM29909.1| hypothetical protein RTM1035_01090 [Roseovarius sp. TM1035] Length = 1277 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 19/145 (13%) Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--------NAEYQAAKELQ 56 I +T + + + ELRW E R+ + + + E + + + Sbjct: 403 IAITKEAEIERRAELRWLLSFEMTRMNLDLQVSSLESQIGEYDRQLARNRTQLETLVRQR 462 Query: 57 NLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115 + E R+ + ++ I A + ID ++ + + E G + ++G+ Sbjct: 463 AILETRIVDAQSSIEGAKQRIDRIDVTQVDVHALRRNVIREDICGVENQLALIGETL--- 519 Query: 116 QSGLVSISSPIARALIGKELGDIIS 140 +P A AL G+E D++S Sbjct: 520 -------DTPFAPALPGEEPCDVVS 537 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 18/144 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61 D++ + F+ + +EL ++E RI + +E +A Q Q+ Sbjct: 371 SDEVGMLGAAFNHMAEELSASREELEDRIEQRTAELKAS---------QKQLRRQSQILQ 421 Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVS----LVEKNSGDKKNYQIVGDQEADVQS 117 + + + ++ + G+ + + + +N K QI G AD ++ Sbjct: 422 SILDS---MGDGVIV--ADQDGNSVFWNPAAEQIVGIGPQNVDPDKWSQIYGCYLADGKT 476 Query: 118 GLVSISSPIARALIGKELGDIISV 141 S P+ARA+ G+ L +++ Sbjct: 477 MCPSRDLPLARAMRGESLDEVVLY 500 >gi|254245301|ref|ZP_04938623.1| hypothetical protein PA2G_06193 [Pseudomonas aeruginosa 2192] gi|126198679|gb|EAZ62742.1| hypothetical protein PA2G_06193 [Pseudomonas aeruginosa 2192] Length = 158 Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%) Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64 +++L E+ ++A A EN +Y R+ Sbjct: 3 KKQLLRLITEKLAADLEIAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62 Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118 E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120 Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++LIG+ GD A EIL V Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSLLAVEILAV 157 >gi|134115238|ref|XP_773917.1| hypothetical protein CNBH3690 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256545|gb|EAL19270.1| hypothetical protein CNBH3690 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1053 Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 4 KIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 K +T + D+++Q L R++ ER R A + + +E + A+ E Sbjct: 336 KTWMTKLKERDLDRMEQRLTRRKEVERIRKALAHWKRKWDDRRTERWKKDMAERELGFIE 395 Query: 61 GRM 63 R Sbjct: 396 RRR 398 >gi|71280898|ref|YP_267673.1| hypothetical protein CPS_0924 [Colwellia psychrerythraea 34H] gi|71146638|gb|AAZ27111.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 161 Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 99 SGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKELGDIISVNAPGGEKTYE 151 D ++ +G + L ++ SP+ ALIGK+L D I V + Sbjct: 97 DSDTNHWFFIGPAAGGFRCQLAQQNITVITPQSPMGIALIGKQLDDDIEVMLGSNKLEDY 156 Query: 152 IL 153 I+ Sbjct: 157 IV 158 >gi|58261190|ref|XP_568005.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134115795|ref|XP_773611.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var. neoformans B-3501A] gi|74682377|sp|Q5K8T2|SWR1_CRYNE RecName: Full=Helicase SWR1 gi|50256237|gb|EAL18964.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var. neoformans B-3501A] gi|57230087|gb|AAW46488.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1246 Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN----IITRAEVIDI- 78 + RPR + ARA ++ + + QAA+ Q E + E E + R V + Sbjct: 1140 EVTRPRAGEERELARALAEVEDEEDAQAARMAQGEGELDLQEFEEGPKAVAKRVRVFEPE 1199 Query: 79 ---STMSGDRIAFGATVSLVEKNSGDKKNYQI 107 + ++ + G V + G + Y + Sbjct: 1200 NSGTPVTTEAGETGDVVEEYDDEPGSVEEYML 1231 >gi|2558956|gb|AAC49849.1| Masc1 [Ascobolus immersus] Length = 537 Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE--NIITRAEVIDISTMSG 83 ++ R I+ I+EA A E + EG + + +++DI + S Sbjct: 119 KKQRYIRRITEAEA---DPEYRVEDRVLRRRWFQEGYIGDEISYKEHGNGDIVDIRSESP 175 Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 ++ G LV+ +G++ + I G + G + + P+A+A Sbjct: 176 LQVLDGWGGDLVDLENGEETS--IPGPCRSASSYGRL-MKPPLAQA 218 >gi|268324326|emb|CBH37914.1| hypothetical secreted protein [uncultured archaeon] Length = 821 Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 6/114 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 ++I E+ + + E + +EY+ + ++ NEG E + Sbjct: 243 NRIDAEVYMLMPAKLGELDDEELEIKFDEPRGTKSEYEESIYVRVRNEG----DEKMEFS 298 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVSISS 124 +++I+ + I+ + + V+ + + QI A G + I + Sbjct: 299 SKIIEPREIDMKVISVYSGLVEVDGKADEDVKIQITVPYYASEGTHHGKLQIEA 352 >gi|145603312|ref|XP_369334.2| hypothetical protein MGG_06130 [Magnaporthe oryzae 70-15] gi|145011570|gb|EDJ96226.1| hypothetical protein MGG_06130 [Magnaporthe oryzae 70-15] Length = 702 Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 K +QEL + ++ ++ + + E + D +E + + L E + + Sbjct: 279 KKEQELEYYKKVQKMLVDQTKKETKRILDDAEVKDEAHLERLIKELEKTIKKARTKDLGG 338 Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGD 101 EV D + D + + + ++ D Sbjct: 339 EVEDEAAEEPDF----SLLEVPDEELDD 362 >gi|58271724|ref|XP_573018.1| spindle pole body duplication -related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229277|gb|AAW45711.1| spindle pole body duplication -related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1018 Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 4 KIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60 K +T + D+++Q L R++ ER R A + + +E + A+ E Sbjct: 338 KTWMTKLKERDLDRMEQRLTRRKEVERIRKALAHWKRKWDDRRTERWKKDMAERELGFIE 397 Query: 61 GRM 63 R Sbjct: 398 RRR 400 >gi|85082234|ref|XP_956871.1| hypothetical protein NCU01665 [Neurospora crassa OR74A] gi|16944432|emb|CAD11430.1| conserved hypothetical protein [Neurospora crassa] gi|28917951|gb|EAA27635.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 523 Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 13/116 (11%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +K ++ ++E P+++ R + E EY GR E Sbjct: 182 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 230 Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 I E + + + G V +++ +G + + G + +G S Sbjct: 231 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRES 286 >gi|11288453|pir||T49351 hypothetical protein B1D1.50 [imported] - Neurospora crassa Length = 487 Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 13/116 (11%) Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67 T +G +K ++ ++E P+++ R + E EY GR E Sbjct: 226 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 274 Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121 I E + + + G V +++ +G + + G + +G S Sbjct: 275 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRES 330 >gi|226469080|emb|CAX70019.1| Myosin binding subunit [Schistosoma japonicum] Length = 296 Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--NAEYQAAKELQNLNEGRMAELENI 69 + ++ +E + R + A E + + E +++ Q E R++E E Sbjct: 205 YKQLYEEEKVLTTGLREEVKAAQKELKELENSLEYNTGRRRSSDAEQRKMERRISECEQE 264 Query: 70 ITRAE 74 + E Sbjct: 265 LKLLE 269 >gi|119476124|ref|ZP_01616476.1| hypothetical protein GP2143_06025 [marine gamma proteobacterium HTCC2143] gi|119450751|gb|EAW31985.1| hypothetical protein GP2143_06025 [marine gamma proteobacterium HTCC2143] Length = 158 Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 13/151 (8%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITR 72 ++L++ +A A ++++N Y R+A+L+ I+ Sbjct: 10 EQLQFDLSTAARAGQQAHDSATHSENIADNK-YDTLAVEAAYLAHGQSMRIAQLQQFISL 68 Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSP 125 + + + VE + I G + +++ ++P Sbjct: 69 YQHYQRPIFNNQSAIQVGALVCVENEQKQQSRLFI-GPAAGGLSISSQWGLVQVITPTTP 127 Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156 +AR LI K + D + + + I+ + Sbjct: 128 LARLLISKYVDDEVDSEINQRKVCFRIVSIE 158 >gi|284038115|ref|YP_003388045.1| hypothetical protein Slin_3235 [Spirosoma linguale DSM 74] gi|283817408|gb|ADB39246.1| hypothetical protein Slin_3235 [Spirosoma linguale DSM 74] Length = 154 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 41 GDLSENAEYQAAKEL--QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN 98 GD E A E ++E + + + S + + G+ Sbjct: 47 GDKYETGRAMAQLERDRHAQLLAEAVKIERELKQLAI----EKSYETVQPGSVAV----- 97 Query: 99 SGDKKNYQIVGDQEA---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 + + +G + V VS +SPI L G +GD ++ N + Y+I +V Sbjct: 98 TSRGLFFISIGAGKMTLDGVDYFAVSAASPIGSLLAGHRVGDAVTFN----KMVYQIQEV 153 >gi|163845661|ref|YP_001633705.1| hypothetical protein Caur_0062 [Chloroflexus aurantiacus J-10-fl] gi|222523366|ref|YP_002567836.1| hypothetical protein Chy400_0067 [Chloroflexus sp. Y-400-fl] gi|163666950|gb|ABY33316.1| protein of unknown function DUF214 [Chloroflexus aurantiacus J-10-fl] gi|222447245|gb|ACM51511.1| protein of unknown function DUF214 [Chloroflexus sp. Y-400-fl] Length = 849 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 15/88 (17%) Query: 76 IDISTMSGDRIAFGATVS-----LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA-RA 129 ID+ T +A G+T L + GD+ + ++G V IS P+A R+ Sbjct: 564 IDLPTGPTTLVAVGSTTDRGRRALRFQQGGDEATWTA-------WENGAVLISEPLAFRS 616 Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLW 157 +G +GD ++V G + I V + Sbjct: 617 GLG--VGDTLTVRTDRGLRELPIAGVYY 642 >gi|118588951|ref|ZP_01546358.1| hypothetical protein SIAM614_12903 [Stappia aggregata IAM 12614] gi|118438280|gb|EAV44914.1| hypothetical protein SIAM614_12903 [Stappia aggregata IAM 12614] Length = 1295 Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT----VSLV 95 +G + Y QN N+GR+ + +I + G T ++ Sbjct: 742 FGRAEDGLGYGYEVAQQNRNDGRV-----CLLYVGLILPDPANLRMPDIGETISVDCTVE 796 Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEIL 153 + S + + + + + P A++LIG + GDI+ GG ++++++ Sbjct: 797 IERSDKIRRKVTIEAGPNRPGTERFNPAHPFAKSLIGAKDGDIVVYEGGGGTPQSWKVI 855 >gi|154246196|ref|YP_001417154.1| transposase IS66 [Xanthobacter autotrophicus Py2] gi|154160281|gb|ABS67497.1| transposase IS66 [Xanthobacter autotrophicus Py2] Length = 538 Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAIS------EARAYGDLSENAEYQAAKE 54 M+ + +T + K+++EL ++ E R+I + EARA D E Sbjct: 41 MIAHLKLTIE---KLRRELYGQRSERTVRLIDQMELQLEELEARASEDEIAAQESARLAS 97 Query: 55 LQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108 L R + + R V+ + S ++ L + + +IV Sbjct: 98 LPAPAPRRRPVRKPFPEHLPRERVVVPAPTSCPCC---GSMKLSKLGEDVTETLEIV 151 >gi|294054197|ref|YP_003547855.1| hypothetical protein Caka_0660 [Coraliomargarita akajimensis DSM 45221] gi|293613530|gb|ADE53685.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM 45221] Length = 156 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 26/150 (17%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSEN---AEYQAAKELQNLNE-GRMAELEN 68 D ++QEL+ + A +A AY E +++ + G+ + Sbjct: 12 DTLEQELKH--------AVDASKDAAAYATNEEAKAESQWDTQGLEASYLAAGQADQARQ 63 Query: 69 IITRAEVIDISTMS----GDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADVQSG 118 + + + ++ GA L G+ + Y G + D Sbjct: 64 WADAIKELRAEKHDLLVRKNSVSLGAL--LQCDFGGESEYYFFAGVAGGHSVEVEDKSVT 121 Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148 +++ SP+A L+G + G+ S P G Sbjct: 122 VITPQSPLAGRLLGLKEGE--SFRLPNGTY 149 >gi|226939348|ref|YP_002794421.1| hypothetical protein LHK_00417 [Laribacter hongkongensis HLHK9] gi|226941500|ref|YP_002796574.1| hypothetical protein LHK_02584 [Laribacter hongkongensis HLHK9] gi|226714274|gb|ACO73412.1| hypothetical protein LHK_00417 [Laribacter hongkongensis HLHK9] gi|226716427|gb|ACO75565.1| hypothetical protein LHK_02584 [Laribacter hongkongensis HLHK9] Length = 342 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 AR S + A +Q E R+ + ++R VI + M+G++I G T ++ Sbjct: 15 QLARLNSVPSAEKSFTVAPSIQQTLESRIQQSSEFLSRINVIGVPEMAGEKIGLGVTGTI 74 Query: 95 V 95 Sbjct: 75 A 75 >gi|86131965|ref|ZP_01050561.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85817299|gb|EAQ38479.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 152 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 33/149 (22%) Query: 15 IQQEL-----RWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQNLNEGR--- 62 I++EL Q R +++ I + A E + E Sbjct: 6 IKEELLKACKEHLMQ--RRDVVQQILDNVATSLREETKSTAGDKHETGRAMLQLERENAG 63 Query: 63 -----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEAD 114 + +LE I R ++ +S + G+ V + Y I VG + D Sbjct: 64 KQLAAIEKLEQIFLRIKL----DLSEGPVHLGSVVVT------SQACYFISIPVGAIKVD 113 Query: 115 VQSGL-VSISSPIARALIGKELGDIISVN 142 + + I SPI + L+GK GD + Sbjct: 114 GLTFYAIGIGSPIGQLLMGKREGDEVRFR 142 >gi|326781120|ref|ZP_08240385.1| ABC transporter related protein [Streptomyces cf. griseus XylebKG-1] gi|326661453|gb|EGE46299.1| ABC transporter related protein [Streptomyces cf. griseus XylebKG-1] Length = 600 Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100 AA E R+ E E ++ + D + A+G ++ E G Sbjct: 94 DAALAELRDLERRIREAEAGLSERKPGDPGPSDAELAAYGDLLTAYEDRDG 144 >gi|32566139|ref|NP_506065.2| MYOsin heavy chain structural genes family member (myo-3) [Caenorhabditis elegans] gi|127737|sp|P12844|MYO3_CAEEL RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC A gi|6799|emb|CAA30856.1| myosin heavy chain 3 [Caenorhabditis elegans] gi|33300386|emb|CAB01576.2| C. elegans protein K12F2.1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1969 Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 ++++QE ER R + I E + D +ENA + K++ E R+ +E + Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839 Query: 71 TRAE 74 + Sbjct: 1840 DGEQ 1843 >gi|111018727|ref|YP_701699.1| sulfonate ABC transporter substrate-binding component [Rhodococcus jostii RHA1] gi|110818257|gb|ABG93541.1| possible ABC sulfonate transporter, substrate binding component [Rhodococcus jostii RHA1] Length = 349 Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Query: 80 TMSGDRIAFGATVSLVEKN---SGDKKNYQIVGDQEADVQSGLVSIS-SPI--ARALIGK 133 GA LV+ +G Y GD EAD +G + SPI AR LIGK Sbjct: 94 DTDFGSAFNGAIAKLVDAGAPLTGVVSVYGSDGDTEADSFNGYYVLEGSPIRTARELIGK 153 Query: 134 ELGDIISVNAPGGEKTYEILQ 154 ++G +N G Y I + Sbjct: 154 KVG----INTLGAYHEYVIKE 170 >gi|226469078|emb|CAX70018.1| Myosin binding subunit [Schistosoma japonicum] gi|226485266|emb|CAX74344.1| Myosin binding subunit [Schistosoma japonicum] Length = 296 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--NAEYQAAKELQNLNEGRMAELENI 69 + ++ +E + R + A E + + E +++ Q E R++E E Sbjct: 205 YKQLYEEEKVLTTGLREEVKAAQKELKELENSLEYSTGRRRSSDAEQRKMERRISECEQE 264 Query: 70 ITRAE 74 + E Sbjct: 265 LKLLE 269 >gi|194756198|ref|XP_001960366.1| GF13327 [Drosophila ananassae] gi|190621664|gb|EDV37188.1| GF13327 [Drosophila ananassae] Length = 564 Score = 34.0 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69 +G D I+ EL R I ++ A N + + E NLNE ++ E Sbjct: 90 EG-DAIKTELAESVAASVKRRRGRIRKSEALISKDANDDLKCVLEQINLNEIKIEFPEAD 148 Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102 +T A+V+D + + E ++ Sbjct: 149 LTIADVLDDQDQHDFMPSDSCGSQIEEGIDDEE 181 >gi|220921770|ref|YP_002497071.1| hypothetical protein Mnod_1778 [Methylobacterium nodulans ORS 2060] gi|219946376|gb|ACL56768.1| protein of unknown function DUF214 [Methylobacterium nodulans ORS 2060] Length = 863 Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%) Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94 +A ++ L A + E + GR+ L +E+ + + G Sbjct: 543 RDAASFDQLLGAAAPRGKIERVPMMRGRITALNGR-PASEI--KAPEDAAWVLDGDRGIT 599 Query: 95 VEKNSGDKKNYQIVGDQEAD-VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 ++ D D ++ LVS + RAL G ++GD ++VN G T I Sbjct: 600 YAEDLPDGSRVTAGAWWTPDQAKTPLVSFDDQLGRAL-GLKVGDTVTVNVLGRNLTVPIA 658 Query: 154 QVLWI 158 + + Sbjct: 659 NLRHV 663 >gi|26390333|dbj|BAC25880.1| unnamed protein product [Mus musculus] gi|74181932|dbj|BAE32665.1| unnamed protein product [Mus musculus] Length = 329 Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239 >gi|156341276|ref|XP_001620711.1| hypothetical protein NEMVEDRAFT_v1g147315 [Nematostella vectensis] gi|156205955|gb|EDO28611.1| predicted protein [Nematostella vectensis] Length = 122 Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129 + E+I S S + + + SG+K Y G++ SG + + SP Sbjct: 45 LPSGEIIVYSPSSEKIVYSPSGEKIFYSPSGEKIFYSPSGEKIVYSPSGKIIVYSPSGEK 104 Query: 130 LIGKELGDIISVNAPGGEK 148 +I G+II +P G+K Sbjct: 105 IIYSPSGEIIVY-SPSGKK 122 >gi|149049677|gb|EDM02131.1| hypothetical LOC312654 (predicted), isoform CRA_a [Rattus norvegicus] Length = 329 Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239 >gi|268557418|ref|XP_002636698.1| C. briggsae CBR-MYO-3 protein [Caenorhabditis briggsae] gi|74788753|sp|Q60LV4|MYO3_CAEBR RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC A gi|187021029|emb|CAP39610.1| CBR-MYO-3 protein [Caenorhabditis briggsae AF16] Length = 1969 Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 ++++QE ER R + I E + D +ENA + K++ E R+ +E + Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839 Query: 71 TRAE 74 + Sbjct: 1840 DGEQ 1843 >gi|119610154|gb|EAW89748.1| hCG1773689, isoform CRA_c [Homo sapiens] Length = 428 Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68 ++++E+ + P I A A E A + E + L++ Sbjct: 40 RNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKH 99 Query: 69 IITRAE-----VIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E V+D MS + + E G + Q G +A G V Sbjct: 100 KFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQA 159 Query: 123 SSPIARALIGKELGDIISV 141 P++ L ++LGD + + Sbjct: 160 G-PVSSGLALRKLGDRVQL 177 >gi|27376112|ref|NP_767641.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] gi|27349251|dbj|BAC46266.1| bll1001 [Bradyrhizobium japonicum USDA 110] Length = 820 Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155 + +GD++ V APGG +I+ + Sbjct: 585 LNVRVGDVVEVPAPGGTWELDIVGI 609 >gi|167737063|ref|ZP_02409837.1| hypothetical protein Bpse14_03306 [Burkholderia pseudomallei 14] Length = 814 Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSGLVSISSPIARALIGKELGDIISVNA 143 ++ G +L+ + G I + S A IGK +G+ +++ Sbjct: 592 VSAGVAATLL-REDGSPFTLVIDPTDVGTLPQAQNYFPHDSAFAANFIGKRVGETVTIRH 650 Query: 144 PGGEKT 149 GE+T Sbjct: 651 QMGEET 656 >gi|308493565|ref|XP_003108972.1| CRE-SMC-5 protein [Caenorhabditis remanei] gi|308247529|gb|EFO91481.1| CRE-SMC-5 protein [Caenorhabditis remanei] Length = 1092 Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARA--YGDLSENAEYQAAKEL 55 M++K + + ++I E ++ R I + + EA G EY+ A+ Sbjct: 318 MMEKAKMKLENAERIADEHNQEVEKTRKNIETVTEKLEEANEALVGYDDALVEYRRAEAK 377 Query: 56 QNLNEGRMAELENII 70 + E E+ I Sbjct: 378 LSQLERENRREEDAI 392 >gi|255082376|ref|XP_002504174.1| predicted protein [Micromonas sp. RCC299] gi|226519442|gb|ACO65432.1| predicted protein [Micromonas sp. RCC299] Length = 940 Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 9 SKGFDKIQQELRW--RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 + D+++ EL R ++ER R+IK +AR ++ + Y + E + + Sbjct: 248 QEKRDRLRAELDEQVRLKKERERLIKEADDAREKAEVGRVSHYDRWGKRGGGGEPLVDDR 307 Query: 67 ENIITRAEVID 77 ++I + +D Sbjct: 308 GHLIAELKGVD 318 >gi|308504173|ref|XP_003114270.1| CRE-MYO-3 protein [Caenorhabditis remanei] gi|308261655|gb|EFP05608.1| CRE-MYO-3 protein [Caenorhabditis remanei] Length = 1969 Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70 ++++QE ER R + I E + D +ENA + K++ E R+ +E + Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839 Query: 71 TRAE 74 + Sbjct: 1840 DGEQ 1843 >gi|121583964|ref|NP_001073477.1| transmembrane and coiled-coil domains protein 1 [Danio rerio] gi|115529137|gb|AAI24782.1| Zgc:153972 [Danio rerio] Length = 656 Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 509 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 566 >gi|332231785|ref|XP_003265075.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform 2 [Nomascus leucogenys] gi|332817885|ref|XP_003310053.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform 1 [Pan troglodytes] gi|34364785|emb|CAE45831.1| hypothetical protein [Homo sapiens] gi|193784913|dbj|BAG54066.1| unnamed protein product [Homo sapiens] Length = 329 Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239 >gi|3882279|dbj|BAA34499.1| KIAA0779 protein [Homo sapiens] Length = 320 Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 173 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 230 >gi|47223196|emb|CAG11331.1| unnamed protein product [Tetraodon nigroviridis] Length = 462 Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 315 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 372 >gi|119599639|gb|EAW79233.1| transmembrane and coiled-coil domain family 1, isoform CRA_c [Homo sapiens] Length = 480 Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 333 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 390 >gi|148236460|ref|NP_001084767.1| transmembrane and coiled-coil domain family 1 [Xenopus laevis] gi|47125221|gb|AAH70774.1| MGC83809 protein [Xenopus laevis] Length = 509 Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 362 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 419 >gi|46579866|ref|YP_010674.1| hypothetical protein DVU1455 [Desulfovibrio vulgaris str. Hildenborough] gi|120602668|ref|YP_967068.1| hypothetical protein Dvul_1624 [Desulfovibrio vulgaris DP4] gi|46449282|gb|AAS95933.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562897|gb|ABM28641.1| protein of unknown function DUF164 [Desulfovibrio vulgaris DP4] gi|311234133|gb|ADP86987.1| protein of unknown function DUF164 [Desulfovibrio vulgaris RCH1] Length = 247 Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71 + +++EL E+R + ++EA+ D E+ A E+ R + + Sbjct: 135 YTALKEELD----EKRANLEARLAEAQQVLDALEHKRNAAGSEVPGPVLSRYEFIRKRLD 190 Query: 72 RAEVIDIST 80 ++ + Sbjct: 191 HPVIVSVEN 199 >gi|297794167|ref|XP_002864968.1| hypothetical protein ARALYDRAFT_919901 [Arabidopsis lyrata subsp. lyrata] gi|297310803|gb|EFH41227.1| hypothetical protein ARALYDRAFT_919901 [Arabidopsis lyrata subsp. lyrata] Length = 185 Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 11/95 (11%) Query: 17 QELRWRQQEERPRIIK----------AISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66 ++L + EER +++K I R + + E A + ++ ++ E ++E+ Sbjct: 79 EDLDVLEMEEREKVVKHMWDVYNNGRRIRLPRFWQEAFEAAYEELTSDVPDVVEAAISEI 138 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101 + R+ VID + + T +L ++G Sbjct: 139 ARMSIRSVVIDPPPLHSTNVREL-TKTLKLADNGR 172 >gi|72395249|gb|AAZ69522.1| seryl-tRNA synthetase [Methanosarcina barkeri str. Fusaro] Length = 450 Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 12/114 (10%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 EL+ ++ I K EN + + E R+ E+++II + Sbjct: 73 DELKHKRNVVTREIAKL---------KKENKDTLSKIEEMQGINSRIKEIDDIIRDYK-S 122 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 I + ++ + V K+ D +IVG+ + I AL Sbjct: 123 KIHEIMLRIPNIPSSTTPVGKDENDNPVVRIVGEPRKFTFTPKPHWE--IGEAL 174 >gi|116048954|ref|YP_792244.1| hypothetical protein PA14_51060 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584175|gb|ABJ10190.1| hypothetical protein PA14_51060 [Pseudomonas aeruginosa UCBPP-PA14] Length = 158 Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60 +DK + +K+ +L R + E + + +Y Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55 Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116 R+ E+ + ++ I A V+L+ + G ++ + G + A ++ Sbjct: 56 GQSRRVEEIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113 Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 +++ SP+ ++L+G+ GD A EIL V Sbjct: 114 IDCEGREVLVITPRSPLGQSLVGRHPGDET--GAKDSPLAVEILAV 157 >gi|163786843|ref|ZP_02181291.1| hypothetical protein FBALC1_16697 [Flavobacteriales bacterium ALC-1] gi|159878703|gb|EDP72759.1| hypothetical protein FBALC1_16697 [Flavobacteriales bacterium ALC-1] Length = 149 Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 21/154 (13%) Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG-----RMAEL 66 ++K Q L R + + I I +A S + E ++AE+ Sbjct: 8 YNKCQDFLNNRLEVIQKTISD-IQKALQSETKSSAGDKHETGRAMLQLEREKAGNQLAEI 66 Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGL-VSI 122 + + ID++ + + NY I VG+ + + + +S Sbjct: 67 QKQQEIFQKIDLNATPQKAALGSLVYT-------SQLNYYIALSVGEIDIENRKFYAISA 119 Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 S+PIA+ L+ K +G+ I T+ I ++ Sbjct: 120 STPIAQLLLSKTVGEEIQFR----SSTFVITKIE 149 >gi|291334098|gb|ADD93770.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S05-C222] Length = 1253 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 SP+A AL+ E GD +++ AP E + V +I Sbjct: 20 SPLAAALVDVEKGDDVTIIAPIEESKLPLDDVQFI 54 >gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176] gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176] Length = 2992 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 + + RI + I E R Y ++ Q + + R A E I +V+D + Sbjct: 902 WPKVQRRIAQLIKEDRFYTEVE-----QDRFDNIDPIAIREALAERGIVNGQVVDPEKLD 956 Query: 83 GDRIAFGATVSLVEKNSGDK-KNYQIVGDQ---EADVQSGLVSISSPIARALIGKELGDI 138 D ++ GD+ + Y G + D + SP+ R ++ D Sbjct: 957 NDPFIQQVMANVERAAGGDEPEAYTSPGGRTYHPGDAIDAFIDDKSPVVRMVLDHVDEDY 1016 Query: 139 ISVNAPG 145 I P Sbjct: 1017 IWYTMPS 1023 >gi|325679085|ref|ZP_08158679.1| ABC transporter, solute-binding protein [Ruminococcus albus 8] gi|324109209|gb|EGC03431.1| ABC transporter, solute-binding protein [Ruminococcus albus 8] Length = 420 Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFG 89 + +A EA + E EY+A +NE R+ + ++ +E+IDI + + + + Sbjct: 342 VSRAAEEALEAHGMLEGVEYEAN--RMMMNEPRLMTMSPLMENSELIDIYADALNGVYYN 399 Query: 90 ATVSL 94 +++ Sbjct: 400 KHITV 404 >gi|320100818|ref|YP_004176410.1| hypothetical protein Desmu_0620 [Desulfurococcus mucosus DSM 2162] gi|319753170|gb|ADV64928.1| protein of unknown function DUF214 [Desulfurococcus mucosus DSM 2162] Length = 405 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 25/81 (30%) Query: 100 GDKKNYQIVGDQEADVQSGLVSIS---------SPIARALIGKEL------------GDI 138 G++K I G + L S++ S I +AL+G + GD+ Sbjct: 102 GERKTVFIYGVDAEFILKALTSLTVMEGNPPSRSDIGKALVGYRIAFNDNGEREYDLGDV 161 Query: 139 ISVNA----PGGEKTYEILQV 155 +++ PGG+ + L V Sbjct: 162 VAITVYQVQPGGKIQVKRLSV 182 >gi|229824570|ref|ZP_04450639.1| hypothetical protein GCWU000282_01914 [Catonella morbi ATCC 51271] gi|229785941|gb|EEP22055.1| hypothetical protein GCWU000282_01914 [Catonella morbi ATCC 51271] Length = 1228 Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 26/151 (17%) Query: 23 QQEERPRIIKAIS-EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEV----ID 77 + R+ I A DL A+ + + EV +D Sbjct: 566 KSVTPHRVTTEIDYLAADEEDLYVVAQANSKLNEDGTFANDLVMARFRSQNIEVNVDQVD 625 Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI----------- 126 +S ++ AT S+ + D ++G L++ SP+ Sbjct: 626 YMDVSPKQVVAVATASIPFLENDDSNR-ALMGANMQRQAVPLINPQSPLIGTGMEYKAAH 684 Query: 127 --ARALIGKELGDI-------ISVNAPGGEK 148 AL+ K G++ + V P GE Sbjct: 685 DSGAALLCKRAGEVVYVDANKVRVRTPEGEV 715 >gi|254469383|ref|ZP_05082788.1| lipoprotein releasing system transmembrane protein lole [Pseudovibrio sp. JE062] gi|211961218|gb|EEA96413.1| lipoprotein releasing system transmembrane protein lole [Pseudovibrio sp. JE062] Length = 407 Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT 149 ++G E + ++I S +AR L G +GD + V P G T Sbjct: 127 LLGTLEGFDEGEGIAIGSRLARQL-GVTVGDTVRVITPRGSIT 168 >gi|332231787|ref|XP_003265076.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform 3 [Nomascus leucogenys] gi|332817887|ref|XP_003310054.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform 2 [Pan troglodytes] gi|194373639|dbj|BAG56915.1| unnamed protein product [Homo sapiens] Length = 474 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 327 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 384 >gi|57101014|ref|XP_541758.1| PREDICTED: similar to Transmembrane and coiled-coil domains protein 1 [Canis familiaris] Length = 677 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 530 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 587 >gi|50510629|dbj|BAD32300.1| mKIAA0779 protein [Mus musculus] Length = 662 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 515 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 572 >gi|119610157|gb|EAW89751.1| hCG1773689, isoform CRA_f [Homo sapiens] Length = 540 Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68 ++++E+ + P I A A E A + E + L++ Sbjct: 40 RNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKH 99 Query: 69 IITRAE-----VIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122 E V+D MS + + E G + Q G +A G V Sbjct: 100 KFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQA 159 Query: 123 SSPIARALIGKELGDIISV 141 P++ L ++LGD + + Sbjct: 160 G-PVSSGLALRKLGDRVQL 177 >gi|20987344|gb|AAH29759.1| Tmcc1 protein [Mus musculus] Length = 689 Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 542 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 599 >gi|148667134|gb|EDK99550.1| mCG142097 [Mus musculus] Length = 461 Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 314 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 371 >gi|256017222|ref|NP_803131.1| transmembrane and coiled-coil domains protein 1 [Mus musculus] gi|82582294|sp|Q69ZZ6|TMCC1_MOUSE RecName: Full=Transmembrane and coiled-coil domains protein 1 Length = 649 Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67 ++++++L + + I+ E + + Y+ A+++Q E R++++E Sbjct: 502 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 559 >gi|309811282|ref|ZP_07705071.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp. Ellin185] gi|308434764|gb|EFP58607.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp. Ellin185] Length = 493 Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%) Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76 EL R ++ + G +E A K Q+ + R+ + + Sbjct: 358 DELEQFLVAARLDVVGVFGYSDEDGTEAET---YADKLPQDEIDARLEHFRTLTEELNLQ 414 Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQSGLVSISSPIARALIGKE 134 G+R+ + + + + VG Q+ G+ + +P R L Sbjct: 415 RAEERIGERLEVLIEATESDDEDDPEAAVRHVGRAGQQGPDVDGMTYVEAPDGREL---R 471 Query: 135 LGDIISVNA 143 +GDI+ V Sbjct: 472 VGDIVEVEV 480 >gi|34495237|gb|AAQ73468.1| erythrocyte binding protein 2 [Plasmodium falciparum] Length = 2019 Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 +I++E + ++ +R + I EAR D E + A++ + + R E I + Sbjct: 1094 RIEEESKKKEAMKRAEDARRIEEARRAEDARRIEEARRAEDARRVEIARRVEDARRIEIS 1153 Query: 74 EVIDIST 80 + + Sbjct: 1154 RRAEDAK 1160 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.157 0.465 Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,206,191,022 Number of Sequences: 14124377 Number of extensions: 131980696 Number of successful extensions: 482909 Number of sequences better than 10.0: 4180 Number of HSP's better than 10.0 without gapping: 6222 Number of HSP's successfully gapped in prelim test: 1061 Number of HSP's that attempted gapping in prelim test: 470263 Number of HSP's gapped (non-prelim): 10389 length of query: 158 length of database: 4,842,793,630 effective HSP length: 120 effective length of query: 38 effective length of database: 3,147,868,390 effective search space: 119618998820 effective search space used: 119618998820 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 76 (33.7 bits)