RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] (480 letters) >gnl|CDD|30817 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]. Length = 477 Score = 505 bits (1303), Expect = e-144 Identities = 205/478 (42%), Positives = 315/478 (65%), Gaps = 7/478 (1%) Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 +R+ KI++TLGP++ SE+++ +L E G +V R+N SH H++ + I +R + Sbjct: 1 ERMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKL 60 Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSD--RVMLPHPEIFASI 118 RP+ IL+DL+GPK R GKF V+L +G+ FTL D +G D RV + + ++ + Sbjct: 61 GRPVAILLDLKGPKIRTGKFKGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDV 120 Query: 119 KIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178 K GDR+L+DDG+++L V E + +V+ G ++ KG++ P L+ ALT+KD+ED Sbjct: 121 KPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKED 180 Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQL 235 L L+ VD+VALSF+++A+D+ E+R+I+++ + +++KIE A++ EII+ Sbjct: 181 LKFGLEQ-GVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEA 239 Query: 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS 295 SD +MVARGDLGVE+ LE +P IQK++IR AR+ GKPV+ ATQMLESM+ +P PTRAEVS Sbjct: 240 SDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVS 299 Query: 296 DVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETG 355 DVA AV + DA+MLS ETA+G YPV+AV TM+ +A AE++ ++ R P+ + Sbjct: 300 DVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSI 359 Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + I+ AA IAE L AI T SG T ++ RP+ IIAL+P + ARRLALVWG Sbjct: 360 TEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWG 419 Query: 416 IHCVVTE-DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 ++ ++ E + +D+MV A ++E G K GD ++I+AG+P+GT G+TN +++ + Sbjct: 420 VYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 >gnl|CDD|29370 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.. Length = 480 Score = 375 bits (964), Expect = e-104 Identities = 174/482 (36%), Positives = 273/482 (56%), Gaps = 15/482 (3%) Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 LRR KI+ T+GP++ S + + +L + G +V R+N SH SH+ I +R ++ P Sbjct: 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGP 60 Query: 64 IGILIDLQGPKFRVGKFAN-SKVDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 + I +D +GP+ R G F + L G + T D G+ +++ + + + + Sbjct: 61 VAIALDTKGPEIRTGLFKGGKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSP 120 Query: 121 GDRLLIDDGRVKLCVQEK-GIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179 G+ +L+DDG + L V K + C+V+ G + RKG++ P T + AL++KD+ DL Sbjct: 121 GNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKADL 180 Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237 ++ VD + SF++ A D+LEIR+++ + I +++KIE + EI++ SD Sbjct: 181 RFGVEQ-GVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297 +MVARGDLGVE+ E + QK LI GKPV+ ATQMLESM+ +P PTRAEVSDV Sbjct: 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDV 299 Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERD-SSWLEMRSLRRIEPNETGA 356 A AV + D +MLS ETA G YPV+AV+ M+ + AE+ S + +RR+ P T Sbjct: 300 ANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTST 359 Query: 357 -DVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + ++ +A + A L AI T SG T ++ RP IIA++ QTAR+L L G Sbjct: 360 TEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRG 419 Query: 416 IHCVVTEDA-----SDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIA 470 ++ V+ E+ D+D + A + E+G K GD +++ G P+G+ GSTN +RI Sbjct: 420 VYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGS-GSTNTMRIL 478 Query: 471 YI 472 + Sbjct: 479 TV 480 >gnl|CDD|143979 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains. Length = 348 Score = 316 bits (813), Expect = 6e-87 Identities = 127/340 (37%), Positives = 200/340 (58%), Gaps = 9/340 (2%) Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 LRR KI+ T+GP++ S + + +L + G +V R+N SH SH+ I +R E + Sbjct: 1 LRRTKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAEEKLGGL 60 Query: 64 IGILIDLQGPKFRVGKFANSKVD--LTEGQIFTLDNKDSLGSS---DRVMLPHPEIFASI 118 + I +D +GP+ R G F + K D L G F + + + +++ + + + + Sbjct: 61 VAIALDTKGPEIRTGLFKDGKKDIELKAGDKFLVSTDPAYKGAGDKEKIYVDYKNLTKDV 120 Query: 119 KIGDRLLIDDGRVKLCVQEKGIGF-IKCKVIAGISIADRKGISFPDTFLTTQALTQKDRE 177 G +L+DDG + L V EK + +V+ G + RKG++ P T + AL++KD+ Sbjct: 121 SPGGIILVDDGVLSLKVLEKDDDKTLVTEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKA 180 Query: 178 DLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQL 235 DL ++ VD + SF+++A D+LE+R+++ + I +++KIE + EI++ Sbjct: 181 DLRFGVKQ-GVDMIFASFVRTASDVLEVREVLGEAGKDIKIIAKIENQEGVNNFDEILEA 239 Query: 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS 295 SD +MVARGDLG+E+ E + QK LI GKPV+ ATQMLESM+ +P PTRAEVS Sbjct: 240 SDGIMVARGDLGIEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVS 299 Query: 296 DVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAE 335 DVA AV + D +MLS ETA G+YPV+AV+ M+ + AE Sbjct: 300 DVANAVLDGTDCVMLSGETAKGNYPVEAVKMMARICLEAE 339 >gnl|CDD|37534 KOG2323, KOG2323, KOG2323, Pyruvate kinase [Carbohydrate transport and metabolism]. Length = 501 Score = 289 bits (742), Expect = 8e-79 Identities = 161/463 (34%), Positives = 251/463 (54%), Gaps = 16/463 (3%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63 R+ KI+ T+GP+S S +++ +L + G ++ R+N SH SH+ E I +R A+ P Sbjct: 21 RKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALP 80 Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 I++D +GP+ R G N K + L EGQ T D S+ + + + ++ +K Sbjct: 81 CAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKP 140 Query: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKG-ISFPDTFLTTQALTQKDREDL 179 GD + +DDG + L V+ + C+V G + RKG ++ P T + ALT+KD +DL Sbjct: 141 GDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDL 200 Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKII--SQNKIGLMSKIEKPRAIEYASEIIQLSD 237 ++ +VD + SFI+ A D+ E+RK++ S I L+SKIE + EI+ SD Sbjct: 201 KFGVEN-KVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIESD 259 Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297 +MVARGDLG+E+ E + QK +I GKPV+ ATQMLESM+ P PTRAE SDV Sbjct: 260 GIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDV 319 Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRS-LRRIEPNETGA 356 A AV + AD +MLS ETA G YPV+AV+TM+ + AE + + S L Sbjct: 320 ANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMST 379 Query: 357 -DVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + ++++A + A SAI T SG T + ++ RP + II+++ + AR+ L G Sbjct: 380 IESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRG 439 Query: 416 IHCVVTED------ASDSDDMVNRACRIVVEQGFGKPGDRIII 452 I V+ + D + + ++G K GD +++ Sbjct: 440 IIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVV 482 >gnl|CDD|145835 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins. Length = 117 Score = 131 bits (332), Expect = 4e-31 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + I+ +A + A+ L AI T SG T ++ RP IIA++P TARRLAL WG Sbjct: 1 TEAIARSAVEAAKELGAKAIVVLTESGRTARLVSKYRPGAPIIAVTPNEGTARRLALYWG 60 Query: 416 IHCVVTEDASDS-DDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAY 471 +H V+ ++ S S D+++ A R+ + G K GD ++++AG+P+GT G TN L++ Sbjct: 61 VHPVLGDERSISTDEIIAEALRVAKDAGLIKKGDLVVVTAGVPVGTSGGTNTLKVIT 117 >gnl|CDD|31845 COG1659, COG1659, Uncharacterized protein, linocin/CFP29 homolog [Function unknown]. Length = 267 Score = 33.0 bits (75), Expect = 0.20 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 339 SWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLE 396 S E+ + R + V AA+++A + Y+A+G G+ +A P L Sbjct: 86 SRNELDDVERGSKDVDWEPV-KEAAKKLAFVEDRTIFEGYSAAGIEGILSASSNPALT 142 >gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323 Score = 30.0 bits (67), Expect = 1.6 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 13/73 (17%) Query: 164 TFLTTQALTQKDR----EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSK 219 T + + L +D+ LH+ QT + + + ++ D + I++ + K Sbjct: 47 TMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ---------VGK 97 Query: 220 IEKPRAIEYASEI 232 ++P+A+ YA+EI Sbjct: 98 FKEPQAVFYAAEI 110 >gnl|CDD|32359 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]. Length = 1444 Score = 29.5 bits (66), Expect = 2.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 253 ELIPGIQKKLIRIARQLGKPVVIA 276 E + I KKLI++ ++L KPVV Sbjct: 712 EALKEIIKKLIKLGKKLNKPVVAT 735 >gnl|CDD|146124 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase. Length = 221 Score = 29.2 bits (66), Expect = 2.3 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%) Query: 188 VDWVALSFIQSADDLLEIRKII---------SQNKIGLMSKIEKPRAIEYASEIIQLS-- 236 V + +++A++ E + L+++IE + A EI + Sbjct: 85 AQGVLVPKVETAEEAREAVSACRYPPKGIRGANGNTCLLAQIESALGVLNADEIAAVEGL 144 Query: 237 DAVMVARGDLGVEMALELIPG 257 D V + DL ++ PG Sbjct: 145 DGVFLGPEDLSADLGTLRSPG 165 >gnl|CDD|29356 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.. Length = 304 Score = 29.4 bits (66), Expect = 2.5 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 221 EKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275 E+ R IE +E + +D V+++ GV L P + + LI AR+LG PV++ Sbjct: 120 EEQRLIERIAERLPEADVVILSDYGKGV-----LTPRVIEALIAAARELGIPVLV 169 >gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337 Score = 29.0 bits (65), Expect = 2.9 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 321 VDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380 R S+ +S + S ++E +SL +E +E G ++ E L L + Y+ Sbjct: 128 GKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYK-------EPLTLEDLISYSF 180 Query: 381 SGATGL 386 A G+ Sbjct: 181 QVARGM 186 >gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]. Length = 405 Score = 28.6 bits (64), Expect = 4.1 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%) Query: 195 FIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALEL 254 +++ +D L +R+ + + EK + L V+V G GVE+A EL Sbjct: 125 GLKTLEDALRLRRHL-------LEAFEK---ASQEEDDRALLTIVIVGGGPTGVELAGEL 174 Query: 255 IPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304 + + L + + VI + + FP ++S A E+ Sbjct: 175 AERLHRLLKKFRVDPSELRVILVEAGPR-ILPMFP--PKLSKYAERALEK 221 >gnl|CDD|34281 COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 363 Score = 28.4 bits (63), Expect = 4.7 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 17/67 (25%) Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 R+ I + DL+G K R+ FA GQ+ LG + + EI+ ++ Sbjct: 167 RKEINSVEDLKGLKMRIPGFA--------GQVMA-----KLGVVPQQ-IAGGEIYPAL-- 210 Query: 121 GDRLLID 127 +R ID Sbjct: 211 -ERGTID 216 >gnl|CDD|33190 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]. Length = 978 Score = 28.0 bits (62), Expect = 5.7 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 30/169 (17%) Query: 303 EEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIE---------PNE 353 E AD +++ + +PV A S + + + L + R+ E + Sbjct: 419 EGADLVLIIGANPTEGHPVLA----SRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPK 474 Query: 354 TGADV--ISSAARQIAETLRLSAIFC---------YTASGATGLRAARER----PKLEII 398 G D+ +++ A+ I + F Y S A E+ P ++ Sbjct: 475 PGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLR 534 Query: 399 ALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPG 447 + MI A+ +A++WG+ VT+ + SD + +++ +G+PG Sbjct: 535 KAAEMIAEAKSVAILWGMG--VTQHSGGSDTSTAISNLLLLTGNYGRPG 581 >gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323 Score = 28.0 bits (62), Expect = 6.3 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 9/54 (16%) Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEI 232 LH+ QT + + + ++ D + +I+++ + ++P A+ YA+EI Sbjct: 66 LHSCFQTMDRLYFVMEYVNGGDLMYQIQQV---------GRFKEPHAVFYAAEI 110 >gnl|CDD|144105 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase C, Y domain. This associates with pfam00388 to form a single structural unit. Length = 117 Score = 27.9 bits (63), Expect = 7.4 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%) Query: 16 SSFSEDVINRLHEE-GTDVFRINMSH 40 SSFSE +L +E + N Sbjct: 29 SSFSETKAKKLLKESPAEFVEHNRRQ 54 >gnl|CDD|146773 pfam04312, DUF460, Protein of unknown function (DUF460). Archaeal protein of unknown function. Length = 138 Score = 27.6 bits (62), Expect = 8.4 Identities = 8/16 (50%), Positives = 13/16 (81%) Query: 262 LIRIARQLGKPVVIAT 277 +I + +LGKPV++AT Sbjct: 68 VIELIYELGKPVIVAT 83 >gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336 Score = 27.5 bits (62), Expect = 8.7 Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 262 LIRIARQLGKPVVIAT 277 I++A+QL VIAT Sbjct: 166 AIQLAKQLTGLTVIAT 181 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.135 0.378 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,457,020 Number of extensions: 288157 Number of successful extensions: 885 Number of sequences better than 10.0: 1 Number of HSP's gapped: 865 Number of HSP's successfully gapped: 45 Length of query: 480 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 382 Effective length of database: 4,146,055 Effective search space: 1583793010 Effective search space used: 1583793010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)