RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] (480 letters) >gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional. Length = 476 Score = 709 bits (1832), Expect = 0.0 Identities = 283/478 (59%), Positives = 357/478 (74%), Gaps = 2/478 (0%) Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 M RR+KI++TLGP+S SED+I +L E G DVFR+N SH HD EL K+IR VE + Sbjct: 1 MKRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDET 60 Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 RPIGIL DLQGPK R+G+FA+ KV L GQ F LD D+ G DRV LPHPEI A++K Sbjct: 61 GRPIGILADLQGPKLRLGRFADGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKP 120 Query: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLH 180 GDRLL+DDG+V+L V+ + C+V+ G ++DRKG+S P T L+ ALT+KDR DL Sbjct: 121 GDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSLPGTVLSVSALTEKDRADLE 180 Query: 181 AALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 AL+ VDWVALSF+Q +D+ E+RKII ++ +M+KIEKP+AI+ I++ SDA+M Sbjct: 181 FALEL-GVDWVALSFVQRPEDVEEVRKII-GGRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 VARGDLGVE+ LE +P IQK++IR AR+ GKPVV+ATQMLESM+ +P PTRAEVSDVATA Sbjct: 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATA 298 Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVIS 360 V + ADA+MLSAETASG YPV+AVRTM+ + ERD ++ + +R +P T D IS Sbjct: 299 VLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAIS 358 Query: 361 SAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV 420 AAR IAE L L+A+ YT+SG T LRAARERP L I+AL+P +TARRLAL WG+HCVV Sbjct: 359 YAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVV 418 Query: 421 TEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLS 478 +DA D+DDMV RA RI + +GF K GDR++I AG+P GTPGSTNMLRIAYIG D +S Sbjct: 419 VDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLRIAYIGEDDVS 476 >gnl|CDD|180277 PRK05826, PRK05826, pyruvate kinase; Provisional. Length = 465 Score = 457 bits (1178), Expect = e-129 Identities = 189/467 (40%), Positives = 291/467 (62%), Gaps = 13/467 (2%) Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 LRR KI++TLGP+S S + + +L E G +V R+N SH SH++ + +R + + RP Sbjct: 3 LRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRP 62 Query: 64 IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGD 122 + IL+DL+GPK RVGKF K+ L G FTLD ++ G +RV + + + +K GD Sbjct: 63 VAILLDLKGPKIRVGKFKEGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGD 122 Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182 LL+DDG+++L V E ++ +V G +++ KGI+ P L+ ALT+KD+ D+ A Sbjct: 123 ILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGINIPGGGLSLPALTEKDKADIKFA 182 Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLSDAV 239 + VD++A+SF++SA+D+ E R+++ + +++KIE+ A++ EII+ SD + Sbjct: 183 AEQ-GVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGI 241 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLGVE+ E +PG+QKK+IR AR+ GKPV+ ATQMLESM+ +P PTRAEVSDVA Sbjct: 242 MVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVAN 301 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359 AV + DA+MLS ETA+G YPV+AV M+ + AE++ S +L + + + Sbjct: 302 AVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFS----INLSKHRLDRQFDRID 357 Query: 360 SSAARQIAETLRLS----AIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + A AI T SG T +R RP I A++ +T RRLAL G Sbjct: 358 EAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRG 417 Query: 416 IHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462 ++ V+ + A+D+DD A R+++E+G + GD +++++G P+GT G Sbjct: 418 VYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGDPMGTAG 464 >gnl|CDD|162184 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars. Length = 473 Score = 438 bits (1129), Expect = e-123 Identities = 177/474 (37%), Positives = 290/474 (61%), Gaps = 10/474 (2%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 RR KI+ T+GP++ S +++ +L + G +V R+N SH SH++ + I+ +R + RP+ Sbjct: 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPV 60 Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKIGD 122 IL+D +GP+ R G+ V L +G I T D+ G + V + + + + GD Sbjct: 61 AILLDTKGPEIRTGEIKGGPVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGD 120 Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182 ++L+DDG++ L V + C+V+ G ++ +KG++ P + AL++KD++DL Sbjct: 121 KILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFG 180 Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNK---IGLMSKIEKPRAIEYASEIIQLSDAV 239 ++ VD VA SF+++A+D+LE+R+++ + + +++KIE ++ EI + SD + Sbjct: 181 VEQ-GVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLGVE+ E +P QKK+IR + GKPV+ ATQML+SM+ +P PTRAEVSDVA Sbjct: 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVAN 299 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNE--TGAD 357 A+ + DA+MLS ETA G YPV+AV+ M+ +A AE+ ++L + R+ + T + Sbjct: 300 AILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITE 359 Query: 358 VISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIH 417 I+ +A + AE L AI T SG T ++ RP IIA++P + AR+LAL WG+ Sbjct: 360 AIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVF 419 Query: 418 CVVTED-ASDSDDMVNRACRIVVEQGFGKPGDRII-ISAGLPLGTPGSTNMLRI 469 + ++ SD++ VN+A ++ E+G K GD ++ I G P+G G TN +R+ Sbjct: 420 PFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTIRV 473 >gnl|CDD|180540 PRK06354, PRK06354, pyruvate kinase; Provisional. Length = 590 Score = 437 bits (1127), Expect = e-123 Identities = 199/475 (41%), Positives = 306/475 (64%), Gaps = 7/475 (1%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 RR KI++T+GP+S S + + +L E G R+N SH H++ IK IR + + + Sbjct: 8 RRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTV 67 Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRL 124 GIL DLQGPK R+G+F + ++L G F L +++ LG+ ++ + + + + +G R+ Sbjct: 68 GILQDLQGPKIRLGRFEDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRI 127 Query: 125 LIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182 L+DDG ++L V+E K G + CKV+ G ++++KG++FP L+ A+T+KDREDL Sbjct: 128 LLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVNFPGVSLSLPAITEKDREDLIFG 187 Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLSDAV 239 L+ VDW+ALSF+++ D+LEIR++I ++ I +++KIEK AI+ I++L D + Sbjct: 188 LEQ-GVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGL 246 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLGVE+ E +P +QK+LI+ A +LGKPV+ ATQML+SM +P PTRAE SDVA Sbjct: 247 MVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVAN 306 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359 A+ + DA+MLS ETA+G YPV+AV+TM+ +A E+D + ++ S R E T + I Sbjct: 307 AILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRP-EFTTTITNAI 365 Query: 360 SSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCV 419 S A IA L +AI T SGAT ++ RPK I+A++P ARRL LVWG+ + Sbjct: 366 SQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPL 425 Query: 420 VTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGA 474 + DA +D+ + A + E G K GD ++I+AG +G GST+++++ +GA Sbjct: 426 LVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESGSTDLMKVHVVGA 480 >gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional. Length = 470 Score = 303 bits (779), Expect = 5e-83 Identities = 156/474 (32%), Positives = 256/474 (54%), Gaps = 23/474 (4%) Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 +++ KI+ T+GP + SE+++ +L + G +V R+N SH + + + IK +R V ++ + Sbjct: 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKK 60 Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLDNKDS-LGSSDRVMLPHPEIFASIKIG 121 IL+D +GP+ R K V L GQ FT S +G+ +RV + + A + +G Sbjct: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVG 120 Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181 + +L+DDG + + V + CKV+ + + KG++ P + AL +KD++DL Sbjct: 121 NTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180 Query: 182 ALQTCE--VDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLS 236 CE VD+VA SFI+ D+LEIR+ + + I ++SKIE + EI++ S Sbjct: 181 G---CEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEAS 237 Query: 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296 D +MVARGDLGVE+ +E + QK +I + K V+ ATQML+SM+ +P PTRAE D Sbjct: 238 DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGD 297 Query: 297 VATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNE-TG 355 VA A+ + DA+MLS E+A G YP++AV M A+ ER + R + + Sbjct: 298 VANAILDGTDAVMLSGESAKGKYPLEAVSIM---ATICERTDRVMNSRLESNNDNRKLRI 354 Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSPMIQTARRLA 411 + + A + AE L I T G ++AR P I+AL+ +TAR+L Sbjct: 355 TEAVCRGAVETAEKLDAPLIVVATQGG----KSARSVRKYFPDATILALTTNEKTARQLV 410 Query: 412 LVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTN 465 L G+ + ++ + +DD + ++ G + GD +++ +G L G+TN Sbjct: 411 LSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSG-ALVPSGTTN 463 >gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional. Length = 513 Score = 288 bits (738), Expect = 3e-78 Identities = 148/472 (31%), Positives = 248/472 (52%), Gaps = 7/472 (1%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63 ++ I+ T+GP+ + + + +L + G ++ R N SH H+ + + +R A + R Sbjct: 38 KKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNAN 97 Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQIFTL-DNKDSLGSSDRVMLPHPEIFASIKIG 121 +GIL+D +GP+ R G N K + L EGQ + + LG + + ++ S+K+G Sbjct: 98 LGILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVG 157 Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181 + +LI DG + V E +I KV+ +I +RK ++ P + + +KD+ D+ Sbjct: 158 NIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILN 217 Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSDAV 239 D++ALSF+QSADD+ R+++ + I ++ KIE + EI+ SD + Sbjct: 218 FAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGI 277 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLG+E+ E + QK +I GKPV+ ATQMLESM+ +P PTRAE +DVA Sbjct: 278 MVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVAN 337 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEMRSLRRIEPNETGAD 357 AV + D +MLS ETA+G +PV+AV M+ + AE D L + + + Sbjct: 338 AVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQE 397 Query: 358 VISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIH 417 ++ +A + AE + I T +G T ++ RP I+ALS + L++ G+ Sbjct: 398 AVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVT 457 Query: 418 CVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469 V +D ++ A + E+G + GD I G+ GS+N++++ Sbjct: 458 TYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKV 509 >gnl|CDD|178230 PLN02623, PLN02623, pyruvate kinase. Length = 581 Score = 260 bits (666), Expect = 5e-70 Identities = 155/454 (34%), Positives = 254/454 (55%), Gaps = 12/454 (2%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSH---TSHDKMCELIKKIRAVELRSR 61 R+ KI+ T+GPS+ + ++I +L E G +V R+NMSH SH K+ +L+K+ A Sbjct: 110 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA--QSKD 167 Query: 62 RPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIG 121 I I++D +GP+ R G + L EGQ FT K + + D V + + + +++G Sbjct: 168 NVIAIMLDTKGPEVRSGDLPQP-IMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVG 226 Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181 D LL+D G + L V+ K +KC+V+ G + R+ ++ T ++T+KD ED+ Sbjct: 227 DMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKF 286 Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKII--SQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239 ++ +VD+ A+SF++ A + E++ + I ++ KIE +I II SD Sbjct: 287 GVEN-KVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLG E+ +E +P +Q+++IR R +GKPV++AT MLESM+ P PTRAEVSD+A Sbjct: 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAI 405 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRS-LRRIEPNETGADV 358 AV E ADA+MLS ETA G +P+ AV+ M VA E L + N ++ Sbjct: 406 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMS-EM 464 Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418 + A +A TL ++I +T +G + + RP I A + + +RLAL G+ Sbjct: 465 FAFHATMMANTLG-TSIIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCP 523 Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIII 452 + + + D+++ RA +++ +G K G+ + + Sbjct: 524 IYMQFSDDAEETFARALSLLLNKGMVKEGEEVAL 557 >gnl|CDD|178080 PLN02461, PLN02461, Probable pyruvate kinase. Length = 511 Score = 254 bits (652), Expect = 3e-68 Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 35/482 (7%) Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 + + KI+ TLGP+S S ++ +L G +V R N SH SH+ E + +R + Sbjct: 17 GLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANT 76 Query: 61 RRPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLDNKDSL-GSSDRVMLPHPEIFASI 118 +++D +GP+ R G + K V L +GQ T+ S+ G + + + + ++ + Sbjct: 77 GILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDV 136 Query: 119 KIGDRLLIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDR 176 K G +L DG + L V G ++C+ + +RK ++ P + LT+KD+ Sbjct: 137 KPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDK 196 Query: 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ--NKIGLMSKIEKPRAIEYASEIIQ 234 ED+ ++D++ALSF++ DL+E+RK++ + I L+SK+E ++ +I+ Sbjct: 197 EDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256 Query: 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEV 294 SDA MVARGDLG+E+ +E I QK +I GKPVV ATQMLESM+ SP PTRAE Sbjct: 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEA 316 Query: 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEMRSLRR---- 348 +DVA AV + D +MLS ETA+G+YP AV+TM+ + AE D L +R Sbjct: 317 TDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLP 376 Query: 349 IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS-PMIQT- 406 + P E+ A SSA R A ++ S I T G T A+ RP + I+++ P I T Sbjct: 377 MSPLESLA---SSAVRT-ANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTD 432 Query: 407 -----------ARRLALVWGIHCVVTE------DASDSDDMVNRACRIVVEQGFGKPGDR 449 AR + G+ V+ E D+ +++++ A ++G KPGD Sbjct: 433 SFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDS 492 Query: 450 II 451 ++ Sbjct: 493 VV 494 >gnl|CDD|178362 PLN02762, PLN02762, pyruvate kinase complex alpha subunit. Length = 509 Score = 246 bits (631), Expect = 7e-66 Identities = 147/470 (31%), Positives = 251/470 (53%), Gaps = 22/470 (4%) Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62 + RR K++ T+GP+ + + L G +V R+NM H + + ++I+++R + Sbjct: 23 STRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGF 82 Query: 63 PIGILIDLQGPKFRVGKF-ANSKVDLTEGQIFTLDNKDSLGS-SDRVMLPHPEIFAS-IK 119 + +++D +G + +G S +G+ +T + GS + + + + FA +K Sbjct: 83 AVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVK 142 Query: 120 IGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISF-PDTFLTTQ------ALT 172 +GD L++D G V+ V EK +KCK + R ++F D L + ++ Sbjct: 143 VGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTIS 202 Query: 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN----KIGLMSKIEKPRAIEY 228 KD D+ + VD++A+SF++SA+ + ++ I+ IG+++KIE +++ Sbjct: 203 SKDWLDIDFGISE-GVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKN 261 Query: 229 ASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPF 288 EII+ SD MVARGDLG ++ LE +P +Q+K++R+ RQL KPV++A+Q+LESM+ P Sbjct: 262 LEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPT 321 Query: 289 PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDS------SWLE 342 PTRAEV+DV+ AV + ADA+MLS E+A G YP A+ + V+ E S LE Sbjct: 322 PTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALE 381 Query: 343 MRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSP 402 + L + ++ +SAA ++A L + AIF YT G +R RP I A + Sbjct: 382 LPQLSSSLSDRISEEICNSAA-KMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTD 440 Query: 403 MIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIII 452 RRL L WG+ + + D + +N+ ++ +G K GD +I Sbjct: 441 TTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSGDLVIA 490 >gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated. Length = 352 Score = 240 bits (613), Expect = 6e-64 Identities = 124/332 (37%), Positives = 204/332 (61%), Gaps = 8/332 (2%) Query: 7 IKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGI 66 I I T+GP+S +++ + +L G + R+N+SH +H+ ++I+ +++++ I I Sbjct: 3 IDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD----DSIKI 58 Query: 67 LIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLI 126 L D+QGPK R+G+ ++ L G F L + GSS + + I +K+G R+L+ Sbjct: 59 LGDVQGPKIRLGEIKGEQITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILM 118 Query: 127 DDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTC 186 +DG V+L V++ I+ KV G +I+ KG++ P + A+T+KD++D+ L+ Sbjct: 119 NDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGAIVRLPAITEKDKKDIQFLLEE- 177 Query: 187 EVDWVALSFIQSADDLLEIRKIISQNKI---GLMSKIEKPRAIEYASEIIQLSDAVMVAR 243 +VD++A SF++ + EIR I Q K L++KIE AIE +I + +D +M+AR Sbjct: 178 DVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIAR 237 Query: 244 GDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE 303 GDLGVE+ + IP +QK +I+ + V+ ATQML+SMV PTRAEV+DV AV + Sbjct: 238 GDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLD 297 Query: 304 EADAIMLSAETASGSYPVDAVRTMSLVASSAE 335 +A+MLSAE+ASG +P+++V T+ LV+ AE Sbjct: 298 GTNAVMLSAESASGEHPIESVSTLRLVSEFAE 329 >gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional. Length = 454 Score = 221 bits (565), Expect = 3e-58 Identities = 139/434 (32%), Positives = 223/434 (51%), Gaps = 16/434 (3%) Query: 33 VFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQI 92 V R+N SH SH+ I +R I I +D +GP+ R G F + + G Sbjct: 3 VARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEAVMERGAT 62 Query: 93 FTLDNKDSL---GSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF-IKCKVI 148 + + G+ D+ + + + ++ G + IDDG + L VQ +KC V Sbjct: 63 CYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVT 122 Query: 149 AGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKI 208 +I+DR+G++ P + A++ KD DL ++ VD + SFI+SA+ + E+RK Sbjct: 123 NAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ-GVDMIFASFIRSAEQVGEVRKA 181 Query: 209 ISQ--NKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIA 266 + I ++ KIE + ++ II+ SD +MVARGDLGVE+ E + QK LI Sbjct: 182 LGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKC 241 Query: 267 RQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRT 326 GKPV+ ATQMLESM +P PTRAEVSDVA AVF AD +MLS ETA G YP + V+ Sbjct: 242 NVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQY 301 Query: 327 MSLVASSAERD-SSWLEMRSLRRIEPNETGAD--VISSAARQIAETLRLSAIFCYTASGA 383 M+ + A+ + ++ S+++++P A+ V SSA + ET + A+ + +G Sbjct: 302 MARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYET-KAKALVVLSNTGR 360 Query: 384 TGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTE-----DASDSDDMVNRACRIV 438 + A+ RP I+ ++ +QT R+L + G+ V + + V Sbjct: 361 SARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAERLGHDEGKEQRVAMGVGFA 420 Query: 439 VEQGFGKPGDRIII 452 +G+ + GD +++ Sbjct: 421 KSKGYVQSGDLMVV 434 >gnl|CDD|181277 PRK08187, PRK08187, pyruvate kinase; Validated. Length = 493 Score = 182 bits (464), Expect = 2e-46 Identities = 123/350 (35%), Positives = 174/350 (49%), Gaps = 42/350 (12%) Query: 3 NLRRIKIISTLGPSSFSED--VINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 RR +I+ TL PS ++D + RL E G D RIN +H +I +R E + Sbjct: 131 AARRTRIMVTL-PSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERAT 189 Query: 61 RRPIGILIDLQGPKFRVGKFANS--KVDLTEGQIFTLDNKDSLGSSD----RVMLPHPEI 114 R IL+DL GPK R G A K L G L + D +V PEI Sbjct: 190 GRRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEI 249 Query: 115 FASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIA----GISIADRKGISFPDTFLTTQA 170 A + +G R+ IDDG++ V+ G G +V G+ + KG++FPDT L A Sbjct: 250 LARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPA 309 Query: 171 LTQKDREDL-----HAALQTCEVDWVALSFIQSADDL------LEIRKIISQNKIGLMSK 219 LT+KDR DL HA D V SF+QS D+ L R+ K+GL+ K Sbjct: 310 LTEKDRADLDFVARHA-------DLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLK 362 Query: 220 IEKPRAIEYASEII-----QLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVV 274 IE PRA+ E+I + VM+ARGDL VE+ E + +Q++++ + PV+ Sbjct: 363 IETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVI 422 Query: 275 IATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAV 324 ATQ+LE +V P+RAE++D A A A+ +ML+ G Y V+AV Sbjct: 423 WATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAV 466 >gnl|CDD|178365 PLN02765, PLN02765, pyruvate kinase. Length = 526 Score = 172 bits (439), Expect = 1e-43 Identities = 124/489 (25%), Positives = 237/489 (48%), Gaps = 54/489 (11%) Query: 8 KIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGIL 67 KI+ TLGP S S +VI + G V R + S + E ++ ++ +++ ++ Sbjct: 31 KIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVM 90 Query: 68 IDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGDRLLI 126 +D GP+ +V + L G TL ++ SS+ + + P + ++K GD + + Sbjct: 91 LDTVGPELQVINKTEKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFV 150 Query: 127 --------DDGRVKLCVQEKGIGFIKCKV-----IAGISI---ADRKGISFPDTFLTTQA 170 + V L V E + C V +AG + I P Sbjct: 151 GQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLAGSLFTLHVSQVRIDLP-------T 203 Query: 171 LTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGL-----MSKIEKPRA 225 L++KD+E + ++D+++LS+ + A+D+ E R+ +S +GL +KIE Sbjct: 204 LSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLS--SLGLSQTQIFAKIENVEG 261 Query: 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVT 285 + + EI+Q +D ++++RG+LG+++ E + QK + GKP V+ T++++SM Sbjct: 262 LTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTD 320 Query: 286 SPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEM 343 + PTRAE +DVA AV + ADAI+L AET G YPV+ + T+ + + AE+ + Sbjct: 321 NLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFK 380 Query: 344 RSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS-P 402 ++++ + + + I+S+A + A ++ S I +T+SG A+ RP + ++++ P Sbjct: 381 KTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIP 440 Query: 403 MIQT------------ARRLALVWGIHCVV--TEDASDSDDMVNRACRIVV-----EQGF 443 ++T AR+ +V G+ ++ +++S N + V G Sbjct: 441 RLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGV 500 Query: 444 GKPGDRIII 452 K DR+++ Sbjct: 501 IKSHDRVVV 509 >gnl|CDD|184806 PRK14725, PRK14725, pyruvate kinase; Provisional. Length = 608 Score = 138 bits (349), Expect = 4e-33 Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 22/230 (9%) Query: 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIA----GISIADRKGISFPDTFLT 167 PE F + ++G+R+ DDG++ V + ++ ++ G + KGI+ PD+ L Sbjct: 367 PEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLP 426 Query: 168 TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ---NKIGLMSKIEKPR 224 ALT KD EDL + D VALSF++S +D+ + + + + +G++ KIE R Sbjct: 427 LPALTDKDLEDLAFVAKHA--DIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRR 484 Query: 225 AIEYASEIIQLSD------AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQ 278 A E I+ L VM+ARGDL VE+ E + +Q++++ + PV+ ATQ Sbjct: 485 AFENLPRIL-LEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQ 543 Query: 279 MLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMS 328 +LES+ P+RAE++D A A+ A+ +ML+ G + V+AVR + Sbjct: 544 VLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLD 587 Score = 55.0 bits (133), Expect = 4e-08 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 21/145 (14%) Query: 5 RRIKIISTLGPSSFSED--VINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62 R +I+ TL P+ ++D ++ RL G D+ RIN +H + +I +R E R Sbjct: 139 RPTRIMVTL-PTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGR 197 Query: 63 PIGILIDLQGPKFRVGKFA-NSKV-------DLTEGQIFTL---------DNKDSLGSSD 105 I +DL GPK R G A +V D G++ T S Sbjct: 198 RCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDAL-GRVLTPARLWLTASESPPPSPPPGP 256 Query: 106 RVMLPHPEIFASIKIGDRLLIDDGR 130 + PE A ++ GD L D R Sbjct: 257 VGLPVDPEWLARLEPGDELRFTDAR 281 >gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP. Length = 238 Score = 32.0 bits (73), Expect = 0.32 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 413 VWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLP 457 V+G CV + A + D + C V+E G R +I AGL Sbjct: 6 VYGCDCVACQRARRNPDYRRQPCSAVIEFN----GARTLIDAGLT 46 >gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed. Length = 272 Score = 31.1 bits (71), Expect = 0.60 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%) Query: 262 LIRIARQLGKPV-----VIATQMLESMV--TSPFPTRAEV 294 LIR AR GK V VIA Q +E V T P+ + Sbjct: 224 LIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELI 263 >gnl|CDD|179031 PRK00448, polC, DNA polymerase III PolC; Validated. Length = 1437 Score = 31.0 bits (71), Expect = 0.70 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 253 ELIPGIQKKLIRIARQLGKPVVIAT 277 E + I K LI + ++L KPVV AT Sbjct: 710 EELKEIIKNLIELGKKLNKPVV-AT 733 >gnl|CDD|162340 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model. Length = 1213 Score = 30.4 bits (69), Expect = 0.96 Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 253 ELIPGIQKKLIRIARQLGKPVVIA 276 E + I KKLI +A++L KPVV Sbjct: 481 EALKEIIKKLIELAKELNKPVVAT 504 >gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional. Length = 250 Score = 30.3 bits (69), Expect = 1.2 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%) Query: 413 VWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLP 457 V+G C A R C ++E G R +I AGLP Sbjct: 16 VFGCECAACARARRDPAYRRRPCSALIEFN----GARTLIDAGLP 56 >gnl|CDD|173557 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional. Length = 548 Score = 29.9 bits (67), Expect = 1.5 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 10/45 (22%) Query: 419 VVTEDA----SDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLG 459 ++T D+ DS D V RAC+ +P R + PLG Sbjct: 296 ILTTDSYYIPYDSGDGVERACKT------RRPSRRYYFTNYGPLG 334 >gnl|CDD|179249 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II; Provisional. Length = 724 Score = 28.9 bits (66), Expect = 2.7 Identities = 8/17 (47%), Positives = 13/17 (76%) Query: 240 MVARGDLGVEMALELIP 256 M A+G LG+E+ L+ +P Sbjct: 276 MAAKGGLGIELDLDKVP 292 >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. Length = 475 Score = 28.7 bits (64), Expect = 3.1 Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 6 RIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIG 65 R++I + +G + L + G DV I+ +H KM IK +RA++L G Sbjct: 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG 272 Query: 66 ILIDLQG 72 ++ +G Sbjct: 273 NVVSAEG 279 >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated. Length = 479 Score = 28.3 bits (64), Expect = 4.1 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 25 RLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELR 59 L E G DV ++ +H +KM E ++ +RA++ Sbjct: 234 ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPG 268 >gnl|CDD|129389 TIGR00288, TIGR00288, conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized. Length = 160 Score = 27.9 bits (62), Expect = 6.1 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 28/98 (28%) Query: 201 DLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAV-------MVARGDLGVEM--- 250 DL EIR+I+S+ G + KI K +YAS+ +L +AV ++ GD+ V M Sbjct: 42 DLDEIREILSE--YGDI-KIGKVLLNQYASD--KLIEAVVNQGFEPIIVAGDVDVRMAVE 96 Query: 251 ALELI--PGIQ-----------KKLIRIARQLGKPVVI 275 A+ELI P I +I A++ GK ++ Sbjct: 97 AMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIV 134 >gnl|CDD|131897 TIGR02850, spore_sigG, RNA polymerase sigma-G factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigG. It is also desginated stage III sporulation protein G (SpoIIIG). This protein is rather closely related to sigma-F (SpoIIAC), another sporulation sigma factor. Length = 254 Score = 27.5 bits (61), Expect = 7.3 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 14/96 (14%) Query: 263 IRIARQLGKPVVIATQMLESMV--TSPFPTRAEVSDVATAVFEEA----DAIMLSAETAS 316 IR++R L A Q+ + ++ S PT +E++ EE DAI + S Sbjct: 109 IRVSRSLRDIAYKALQVRDKLISENSKEPTVSEIAKELKVPQEEVVFALDAIQ---DPVS 165 Query: 317 GSYPV-----DAVRTMSLVASSAERDSSWLEMRSLR 347 P+ D + M ++ +DS WLE +L+ Sbjct: 166 LFEPIYNDGGDPIYVMDQISDEKNKDSQWLEGIALK 201 >gnl|CDD|178877 PRK00117, recX, recombination regulator RecX; Reviewed. Length = 157 Score = 27.5 bits (62), Expect = 7.4 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 169 QALTQK--DREDLHAALQTCEVDWVAL 193 Q L QK DRE + AL ++DW L Sbjct: 83 QELRQKGVDREIIEEALAELDIDWEEL 109 >gnl|CDD|163429 TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed. Length = 176 Score = 27.5 bits (62), Expect = 8.1 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%) Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS----PMIQTARRLA 411 A VI+ AAR + R AIF TA GA LR L +A+ P ++ L Sbjct: 17 AVVIALAARNLPAHQRKKAIFWGTA-GAIVLRIL-----LTAVAVYLLAIPFLKLIGGLL 70 Query: 412 LVW-GIHCVVTEDASDSDD 429 L+W G ++ E+ D Sbjct: 71 LLWIGWKLLLEEEEEQGGD 89 >gnl|CDD|129668 TIGR00578, ku70, ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast. Length = 584 Score = 27.6 bits (61), Expect = 8.3 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 15 PSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62 S F D+I +E V K+ +L++K+RA E R R Sbjct: 189 ISLFYRDIITDAEDEDLGVH-----PEESSKLEDLLRKVRAKETRKRA 231 >gnl|CDD|115292 pfam06622, SepQ, SepQ protein. This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear. Length = 305 Score = 27.3 bits (60), Expect = 8.7 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 409 RLALVWGIHCVVTEDASDSDD----MVNRACRIVVEQGFGKPGDRIII 452 +L ++W IH + ED + DD M+N+ V+E G+ +II Sbjct: 91 KLMILWAIHAALPEDDASVDDVQFTMLNKDIYPVIENNNGENRLNVII 138 >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional. Length = 1490 Score = 27.2 bits (60), Expect = 8.9 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 9/95 (9%) Query: 339 SWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEII 398 W +R+L R N + S AR R ++ S + ++ Sbjct: 1227 IWAPLRALTRSSSNARTSTRRSHRAR------RGRPVYAQPVSPRVSYNTPNLAGRWSLL 1280 Query: 399 ALSPMIQTARRLALVWGI---HCVVTEDASDSDDM 430 + P+ T R LAL + + +++ A ++++ Sbjct: 1281 QVEPLNDTERMLALAENMLDRYGIISRQAVIAENI 1315 >gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein which recruits Pex6-Pex1 complexes to peroxisomes. Mutations in Pex26 can lead to human disorders. Length = 309 Score = 27.3 bits (60), Expect = 9.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 178 DLHAALQTCEVDWVALSFIQSADD 201 D HAAL+TCE W +L A++ Sbjct: 50 DFHAALETCERAWQSLDSFAEAEE 73 >gnl|CDD|179666 PRK03881, PRK03881, hypothetical protein; Provisional. Length = 467 Score = 27.1 bits (61), Expect = 9.5 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 235 LSDAVMV-----ARGDLG------VEMALELIPGIQKKLIRIARQLGKPVVIATQMLES 282 DAV + +GDLG V + + + +++ A++ G PVV + L Sbjct: 59 FRDAVAISDGPRLKGDLGRFGAPEVSFSFKNDLELVEEIAEEAKKEGIPVVEVDEELAR 117 >gnl|CDD|185470 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional. Length = 310 Score = 27.3 bits (61), Expect = 9.7 Identities = 8/25 (32%), Positives = 17/25 (68%) Query: 195 FIQSADDLLEIRKIISQNKIGLMSK 219 F+ + DDL E++ +I +NK+ ++ Sbjct: 88 FVFTKDDLFEVKPVILENKVPAPAR 112 >gnl|CDD|184330 PRK13794, PRK13794, hypothetical protein; Provisional. Length = 479 Score = 27.3 bits (61), Expect = 9.8 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%) Query: 207 KIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGD---------LGVEMALELIPG 257 + I + KI L++K+ IE EII V + R + E A LIP Sbjct: 65 ENIPEGKIVLLNKVP---GIERMEEIIVDGAVVGIIRYNEKKHRWKIIPRPEGARRLIPT 121 Query: 258 IQKKLIRI 265 +KK I + Sbjct: 122 AKKKFIVV 129 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.135 0.378 Gapped Lambda K H 0.267 0.0808 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,755,322 Number of extensions: 515043 Number of successful extensions: 1328 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1264 Number of HSP's successfully gapped: 54 Length of query: 480 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 383 Effective length of database: 3,898,497 Effective search space: 1493124351 Effective search space used: 1493124351 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.4 bits)