RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (480 letters)



>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
           1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
           PDB: 1pky_A 1e0u_A
          Length = 470

 Score =  490 bits (1263), Expect = e-139
 Identities = 141/471 (29%), Positives = 247/471 (52%), Gaps = 9/471 (1%)

Query: 4   LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
           +++ KI+ T+GP + SE+++ ++ + G +V R+N SH  + +  + I+ +R V  ++ + 
Sbjct: 1   MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60

Query: 64  IGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIG 121
             IL+D +GP+ R  K    + V L  GQ FT   +K  +G+S+ V + +      + +G
Sbjct: 61  AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120

Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181
           + +L+DDG + + V       + CKV+    + + KG++ P   +   AL +KD++DL  
Sbjct: 121 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180

Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKIISQNK---IGLMSKIEKPRAIEYASEIIQLSDA 238
             +   VD+VA SFI+   D++EIR+ +  +    I ++SKIE    +    EI++ SD 
Sbjct: 181 GCE-QGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDG 239

Query: 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA 298
           +MVARGDLGVE+ +E +   QK +I    +  K V+ AT ML+SM+ +P PT AE  DVA
Sbjct: 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVA 299

Query: 299 TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADV 358
            A+ +  DA+MLS E+A G YP++AV  M+ +    +R                    + 
Sbjct: 300 NAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR--VMNSRLEFNNDNRKLRITEA 357

Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
           +   A + AE L    I   T  G +     +  P   I+AL+   +TA +L L  G+  
Sbjct: 358 VCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVP 417

Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469
            + ++ + +DD       + ++ G    GD +++ +G  +   G+TN   +
Sbjct: 418 QLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVP-SGTTNTASV 467


>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
           allosteric enzyme, ATP-binding, glycolysis, magnesium,
           metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A
           3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A
          Length = 499

 Score =  474 bits (1221), Expect = e-134
 Identities = 147/483 (30%), Positives = 243/483 (50%), Gaps = 15/483 (3%)

Query: 3   NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62
           N R  +II T+GPS+ S + +  L + G  V R+N SH SH+     I  +R        
Sbjct: 18  NYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGV 77

Query: 63  PIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSL---GSSDRVMLPHPEIFASIK 119
            I I +D +GP+ R G+F      +  G    +    +    G+ D+  + +  +   ++
Sbjct: 78  NIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVR 137

Query: 120 IGDRLLIDDGRVKLCVQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178
            G+ + IDDG + L VQ  +    ++C V    +I+DR+G++ P   +   A++ KDR D
Sbjct: 138 PGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVD 197

Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLS 236
           L   ++   VD +  SFI+SA+ + ++RK +      I ++ KIE  + ++    II+ S
Sbjct: 198 LQFGVE-QGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEES 256

Query: 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296
           D +MVARGDLGVE+  E +   QK LI      GKPV+ ATQMLESM  +P PTRAEVSD
Sbjct: 257 DGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSD 316

Query: 297 VATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERD-SSWLEMRSLRRIEPN-ET 354
           VA AVF  AD +MLS ETA G YP + V+ M+ +   A+   + ++   S+++++    +
Sbjct: 317 VANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMS 376

Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVW 414
             + + S+A       +  A+   + +G +    A+ RP   I+ ++  +QT R+L +  
Sbjct: 377 ADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQ 436

Query: 415 GIHCVVTE-----DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469
           G+  V  +          +  V         +G+ + GD  ++         G  N  RI
Sbjct: 437 GVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHA-DHKVKGYANQTRI 495

Query: 470 AYI 472
             +
Sbjct: 496 LLV 498


>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
           magnesium, transferase, structural genomi structural
           genomics consortium; HET: CIT; 2.64A {Cryptosporidium
           parvum}
          Length = 534

 Score =  453 bits (1167), Expect = e-128
 Identities = 161/483 (33%), Positives = 253/483 (52%), Gaps = 14/483 (2%)

Query: 2   VNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRS 60
           V  R+ +II T+GPS  + + +  L ++G  V R+N SH  H+   + ++ IR A + R 
Sbjct: 49  VTQRKTQIICTIGPSCNNVESLIGLIDKGMSVARLNFSHGDHESHFKTLQNIREAAKARP 108

Query: 61  RRPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASI 118
              +GI++D +GP+ R G     K ++L  GQ   +  +   LG+S+ +   +  +  S+
Sbjct: 109 HSTVGIMLDTKGPEIRTGMLEGGKPIELKAGQTLKITTDYSMLGNSECISCSYSLLPKSV 168

Query: 119 KIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178
           +IG  +LI DG +   V E G  FI CKV+  ++I +RK ++ P   +    +  KDR D
Sbjct: 169 QIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMNLPGCKVHLPIIGDKDRHD 228

Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYA 229
           +        +D++ALSF+Q+  D+   R+IIS+N          I ++SKIE    +   
Sbjct: 229 IVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINF 288

Query: 230 SEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFP 289
             I   SD +MVARGDLG+E+  E I   QK +I      GKPVV ATQMLESM+ S  P
Sbjct: 289 DSICSESDGIMVARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRP 348

Query: 290 TRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR- 348
           TRAE++DVA AV + +D +MLS ETA+G++P DAV  MS V + AE    +  +      
Sbjct: 349 TRAEMTDVANAVLDGSDCVMLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHS 408

Query: 349 -IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTA 407
            +       + I+ +A + A  +    I   T +G T    ++ RP   IIA +   + A
Sbjct: 409 SVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVA 468

Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNML 467
           R L +  G+   V      S+ +++ A  +  E+   + GD  I   G+    PGS N++
Sbjct: 469 RGLKIARGVKTYVLNSIHHSEVVISNALALAKEESLIESGDFAIAVHGVKESCPGSCNLM 528

Query: 468 RIA 470
           +I 
Sbjct: 529 KIV 531


>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics
           consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
          Length = 520

 Score =  449 bits (1157), Expect = e-127
 Identities = 155/474 (32%), Positives = 253/474 (53%), Gaps = 6/474 (1%)

Query: 5   RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63
           ++  I+ TLGP+  S + + +L + G D+ R N SH SH+   E+   +  A ELR    
Sbjct: 46  KKTHIVCTLGPACKSVETLVKLIDAGMDICRFNFSHGSHEDHKEMFNNVLKAQELRPNCL 105

Query: 64  IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGD 122
           +G+L+D +GP+ R G   N +V L EG    L  + + LG    +   + ++  S+K G+
Sbjct: 106 LGMLLDTKGPEIRTGFLKNKEVHLKEGSKLKLVTDYEFLGDETCIACSYKKLPQSVKPGN 165

Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
            +LI DG V   V E     +  +V+    I +RK ++ P+  +    +++KD+ D+   
Sbjct: 166 IILIADGSVSCKVLETHEDHVITEVLNSAVIGERKNMNLPNVKVDLPIISEKDKNDILNF 225

Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNK--IGLMSKIEKPRAIEYASEIIQLSDAVM 240
                 +++A SFIQSADD+  IR ++      I ++ KIE    I +  +I+  SD +M
Sbjct: 226 AIPMGCNFIAASFIQSADDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIM 285

Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300
           +ARGDLG+E++ E +   QK +I      GKP++ ATQMLESM  +P PTRAEV+DVA A
Sbjct: 286 IARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANA 345

Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEM--RSLRRIEPNETGADV 358
           V +  D +MLS ETA G +PV+AV  MS +   AE    +  +    +  IE   +  + 
Sbjct: 346 VLDGTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEA 405

Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
           ++ +A + AE+++ S I   T +G T    A+ +P   I+ALS    T + L +  G+ C
Sbjct: 406 VARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRGVTC 465

Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472
           +       +D ++  A  I  ++   K GD +I   G+     G TN++++  I
Sbjct: 466 IKVGSFQGTDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEEVSGGTNLMKVVQI 519


>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
           stearothermophilus}
          Length = 587

 Score =  394 bits (1014), Expect = e-110
 Identities = 180/474 (37%), Positives = 281/474 (59%), Gaps = 6/474 (1%)

Query: 5   RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64
           R+ KI+ST+GP+S S D + +L E G +V R+N SH  H++    I  IR    R+ R +
Sbjct: 3   RKTKIVSTIGPASESVDKLVQLMEAGMNVARLNFSHGDHEEHGRRIANIREAAKRTGRTV 62

Query: 65  GILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRL 124
            IL+D +GP+ R     N  ++L EG    +   + LG+ +++ + +P +   + +G ++
Sbjct: 63  AILLDTKGPEIRTHNMENGAIELKEGSKLVISMSEVLGTPEKISVTYPSLIDDVSVGAKI 122

Query: 125 LIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
           L+DDG + L V    K  G I   V+ G  + ++KG++ P   +    +T+KDR D+   
Sbjct: 123 LLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGVKVNLPGITEKDRADILFG 182

Query: 183 LQTCEVDWVALSFIQSADDLLEIRKII---SQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239
           ++   +D++A SF++ A D+LEIR+++       I +++KIE    +    EI++ +D +
Sbjct: 183 IR-QGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGL 241

Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
           MVARGDLGVE+  E +P IQK LI+ +  LGKPV+ ATQML+SM  +P PTRAE SDVA 
Sbjct: 242 MVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVAN 301

Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359
           A+F+  DA+MLS ETA+G YPV+AV+TM  +A   E+     ++ S R  E   T  D I
Sbjct: 302 AIFDGTDAVMLSGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTKESQTTITDAI 361

Query: 360 SSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCV 419
             +    A  L ++AI   T SG T    A+ RPK  IIA++     +RRLALVWG++  
Sbjct: 362 GQSVAHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLALVWGVYTK 421

Query: 420 VTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473
                + +D+M++ A    V  G  K GD ++I+AG+P+G  GSTN++++  I 
Sbjct: 422 EAPHVNTTDEMLDVAVDAAVRSGLVKHGDLVVITAGVPVGETGSTNLMKVHVIS 475


>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
           magnesium, transferase, structural genomics, structural
           genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
           3eoe_A
          Length = 511

 Score =  369 bits (948), Expect = e-103
 Identities = 141/477 (29%), Positives = 250/477 (52%), Gaps = 7/477 (1%)

Query: 3   NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSR 61
              R +I+ T+GP+ ++ D + ++ + G +V R+N SH  H+     ++ I+ A++ R  
Sbjct: 34  TAHRTRIVCTMGPACWNVDTLVKMIDAGMNVCRLNFSHGDHETHARTVQNIQEAMKQRPE 93

Query: 62  RPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIK 119
             + IL+D +GP+ R G   + K + L +G    +  + + +G    +   +  +  S+K
Sbjct: 94  ARLAILLDTKGPEIRTGFLKDHKPITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVK 153

Query: 120 IGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179
            G+ +LI DG + + V E G  ++  +     +I +RK ++ P+  +    + +KD+ D+
Sbjct: 154 PGNTILIADGSLSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDI 213

Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237
                    +++A SF+QSADD+  IR ++      I ++ KIE    +    EI+  +D
Sbjct: 214 LNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEAD 273

Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297
            +M+ARGDLG+E+  E +   QK +I     +GKPV+ ATQMLESM+ +P PTRAE +DV
Sbjct: 274 GIMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADV 333

Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSW--LEMRSLRRIEPNETG 355
           A AV +  D +MLS ETA+G +PV  V TM+ +   AE    +  L       + P  + 
Sbjct: 334 ANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPIST 393

Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
            + ++ AA + AE +  + I   T +G T    A+ RP   I+ALS    T + L ++ G
Sbjct: 394 QEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRG 453

Query: 416 IHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472
           +  +       +D ++  A  +  E+     G+ I+   G+     GS+N+L++  +
Sbjct: 454 VTTMQVPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLLKVLTV 510


>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
           enzyme, alternative splicing, glycolysis, magnesium,
           metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
           sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A*
           3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A*
           1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A*
          Length = 550

 Score =  357 bits (916), Expect = 4e-99
 Identities = 170/490 (34%), Positives = 262/490 (53%), Gaps = 24/490 (4%)

Query: 5   RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVE------L 58
           R   II T+GP+S S + +  + + G +V R+N SH +H+   E IK +R          
Sbjct: 62  RNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDP 121

Query: 59  RSRRPIGILIDLQGPKFRVGKFANS---KVDLTEGQIFTLDNKDSL---GSSDRVMLPHP 112
              RP+ + +D +GP+ R G    S   +V+L +G    +   ++       + + L + 
Sbjct: 122 ILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYK 181

Query: 113 EIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALT 172
            I   +++G ++ +DDG + L V++KG  F+  +V  G S+  +KG++ P   +   A++
Sbjct: 182 NICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVS 241

Query: 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYAS 230
           +KD +DL   ++    D V  SFI+ A D+ E+RK++ +    I ++SKIE    +    
Sbjct: 242 EKDIQDLKFGVEQDV-DMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFD 300

Query: 231 EIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPT 290
           EI++ SD +MVARGDLG+E+  E +   QK +I    + GKPV+ ATQMLESM+  P PT
Sbjct: 301 EILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPT 360

Query: 291 RAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIE 350
           RAE SDVA AV + AD IMLS ETA G YP++AVR   L+A  AE     L++    R  
Sbjct: 361 RAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRL 420

Query: 351 PNETG--ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTAR 408
              T    +  +  A + +      AI   T SG +  + AR RP+  IIA++   QTAR
Sbjct: 421 APITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTAR 480

Query: 409 RLALVWGIHCVVTED------ASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462
           +  L  GI  V+ +D      A D D  VN A  +   +GF K GD +I+  G   G+ G
Sbjct: 481 QAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGS-G 539

Query: 463 STNMLRIAYI 472
            TN +R+  +
Sbjct: 540 FTNTMRVVPV 549


>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A
           {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1
           c.49.1.1 PDB: 1a3x_A
          Length = 500

 Score =  352 bits (903), Expect = 1e-97
 Identities = 152/486 (31%), Positives = 243/486 (50%), Gaps = 18/486 (3%)

Query: 3   NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAV-ELRSR 61
           +LRR  II T+GP + + + +  L + G ++ R+N SH S++    +I   R   EL   
Sbjct: 17  DLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPG 76

Query: 62  RPIGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLDNKDSLGSSD---RVMLPHPEIFAS 117
           RP+ I +D +GP+ R G   N     +           D    +     + + +  I   
Sbjct: 77  RPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKV 136

Query: 118 IKIGDRLLIDDGRVKLCVQEK-GIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDR 176
           I  G  + +DDG +   V E      +K K +    I   KG++ P T +   AL++KD+
Sbjct: 137 ISAGRIIYVDDGVLSFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDK 196

Query: 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQ 234
           EDL   ++      V  SFI++A+D+L IR+++ +    + ++ KIE  + +    EI++
Sbjct: 197 EDLRFGVKNGV-HMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILK 255

Query: 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEV 294
           ++D VMVARGDLG+E+    +  +QKKLI  +   GKPV+ ATQMLESM  +P PTRAEV
Sbjct: 256 VTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEV 315

Query: 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR--IEPN 352
           SDV  A+ + AD +MLS ETA G+YP++AV TM+  A  AE+  ++L      R      
Sbjct: 316 SDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKP 375

Query: 353 ETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLAL 412
            +  + ++++A       +  AI   + SG T    ++ RP   II ++   + AR   L
Sbjct: 376 TSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHL 435

Query: 413 VWGIHCVVTEDAS------DSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNM 466
             G+   V E         D +  +N       E G  K GD  +   G   G  G +N 
Sbjct: 436 YRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGA-GHSNT 494

Query: 467 LRIAYI 472
           L+++ +
Sbjct: 495 LQVSTV 500


>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
           {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
          Length = 256

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 213 KIGLMSKIEKPRAIEYASEIIQLS--DAVMVARGDLGVEMALELIPG------IQKKLIR 264
            I ++ +IE  + ++    I      D + V   DL   +               + +  
Sbjct: 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFN 204

Query: 265 IARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETAS 316
            A   GKP  I       +       R  +   AT V   +D  +  + T  
Sbjct: 205 RASAHGKPSGI-------LAPVEADARRYLEWGATFVAVGSDLGVFRSATQK 249


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 68/427 (15%), Positives = 115/427 (26%), Gaps = 183/427 (42%)

Query: 57  ELRS----RRP-IGILIDLQGPKFRVGKFANSKVDLTEGQIFT--------LDNKDSLGS 103
           ELR         +G LI               +  L   ++FT        L+N  +   
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227

Query: 104 SD-----RVMLPHPEIFASIKIGDRLLIDDGRVKLC---------------VQE--KGI- 140
            D      +  P              LI  G ++L                ++   KG  
Sbjct: 228 KDYLLSIPISCP--------------LI--GVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271

Query: 141 ----GFIKCKVIAGISIAD---------RKGIS------------FPDTFLT-------- 167
               G +       I+  D         RK I+            +P+T L         
Sbjct: 272 GHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328

Query: 168 -------TQALTQKD--REDLHAALQTC-----EVDWVALSFIQSADDLLEIRKIIS--- 210
                  +  L+  +  +E +   +            V +S +  A +L     ++S   
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPP 383

Query: 211 QNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLG 270
           Q+  GL   + K +A    S + Q       +R           IP  ++KL        
Sbjct: 384 QSLYGLNLTLRKAKA---PSGLDQ-------SR-----------IPFSERKL-------- 414

Query: 271 KPVVIATQMLESMVTSPF--PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMS 328
                + + L   V SPF        SD+      + + +  +A+      PV       
Sbjct: 415 ---KFSNRFLP--VASPFHSHLLVPASDLINKDLVKNN-VSFNAK--DIQIPVYDTFD-- 464

Query: 329 LVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAE-------TLRLSA--IFCYT 379
                   D     +R L           +       I         T +  A  I  + 
Sbjct: 465 ------GSD-----LRVL--------SGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505

Query: 380 ASGATGL 386
             GA+GL
Sbjct: 506 PGGASGL 512



 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 61/384 (15%), Positives = 115/384 (29%), Gaps = 141/384 (36%)

Query: 163 DTFLT-----TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLM 217
           + F       T+     D         T   + V   F+     L+E       +K+G  
Sbjct: 35  EQFNKILPEPTEGFAADDE-------PTTPAELVG-KFLGYVSSLVE------PSKVGQF 80

Query: 218 SKIEKPRAI--EYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRI---ARQLGKP 272
            ++        E+ +  ++ +D   +A   L      +      K+LI+    AR     
Sbjct: 81  DQV--LNLCLTEFENCYLEGNDIHALAAKLLQEN---DTTLVKTKELIKNYITAR----- 130

Query: 273 VVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVAS 332
                     M   PF  ++      +A+F              G+      + +++   
Sbjct: 131 ---------IMAKRPFDKKSN-----SALFRAV---------GEGN-----AQLVAIFGG 162

Query: 333 SAERDSSWLEMRSLRRI-EPNETGADVISSAARQIAETLRL--SAIFCYTASGATG---- 385
               D  + E+R L +         D+I  +A  ++E +R    A   +T     G    
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQ----GLNIL 216

Query: 386 --LRAARERPKLEIIA---LS-PMI---Q------TARRLALVWGI-------------- 416
             L      P  + +    +S P+I   Q      TA+    + G               
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATG 272

Query: 417 HC--VVTEDA---SDSDDMVNRACRIVVE----------QGFGK----PGDRII---ISA 454
           H   +VT  A   +DS +    + R  +           + +      P   I+   +  
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS--ILEDSLEN 330

Query: 455 GLPLGTPGSTNMLRIAYIGADGLS 478
               G P  + ML I+      L+
Sbjct: 331 N--EGVP--SPMLSIS-----NLT 345


>2ols_A Phosphoenolpyruvate synthase; MCSG, structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics; 2.40A {Neisseria meningitidis MC58}
          Length = 794

 Score = 31.4 bits (70), Expect = 0.53
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 29/116 (25%)

Query: 190 WVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYASEIIQLSDAVM 240
            + + F+++  +   + K + +N         ++ +M   E P     A + +Q  D   
Sbjct: 643 EIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMM--CELPSNAVLAEQFLQYFDGFS 700

Query: 241 VARGDL-----GV--------EMALELIPGIQKKLIRI----ARQLGKPVVIATQM 279
           +   D+     G+        E   E  P + K ++ +     R+  K V I  Q 
Sbjct: 701 IGSNDMTQLTLGLDRDSGLVSESFDERNPAV-KVMLHLAISACRKQNKYVGICGQG 755


>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
           biosynthesis, transferase; 2.00A {Staphylococcus aureus
           subsp} PDB: 3il7_A
          Length = 313

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 7/130 (5%), Positives = 32/130 (24%), Gaps = 4/130 (3%)

Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS----LRRIEPNETGADVISSAARQIAET 369
              G+Y  + +   +      +    W+   +        + ++  +D+   A+ +    
Sbjct: 6   KGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIAD 65

Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429
             +          AT            ++           +  +      +    +    
Sbjct: 66  AGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQY 125

Query: 430 MVNRACRIVV 439
           + +     ++
Sbjct: 126 VQSGDYHNIL 135


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 29.9 bits (67), Expect = 1.4
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 33/80 (41%)

Query: 380 ASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC--------VVTEDASDSDDMV 431
              +   RA R  P L I+                 + C         + E  S   D+V
Sbjct: 3   TRESIDKRAGRRGPNLNIV-----------------LTCPECKVYPPKIVERFS-EGDVV 44

Query: 432 NRACRIVVEQGFGKPGDRII 451
              C +V+        D+++
Sbjct: 45  CALCGLVLS-------DKLV 57


>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
           structure, metal binding protein; HET: ATP; 1.60A
           {Azotobacter vinelandii}
          Length = 276

 Score = 29.6 bits (66), Expect = 1.6
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 10/133 (7%)

Query: 355 GADVISSAARQIAETLRLSAIFCYTASGAT-------GLRAARERPKLEIIALSPMIQTA 407
           GAD I     ++ + L    +   T +G         GL        L  +A S   Q  
Sbjct: 54  GADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113

Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRAC---RIVVEQGFGKPGDRIIISAGLPLGTPGST 464
             LA +     V   +     D +       R VV   F          + +P     + 
Sbjct: 114 HILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTG 173

Query: 465 NMLRIAYIGADGL 477
             L     GA GL
Sbjct: 174 AFLLADAFGAAGL 186


>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
           metal binding protein; HET: ATP; 1.60A {Azotobacter
           vinelandii}
          Length = 270

 Score = 29.2 bits (65), Expect = 2.1
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 11/134 (8%)

Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATG---LRAARE----RPKLEIIALSPMIQTA 407
           G   +     +I    +   +   T +G         A         L  +  S   Q A
Sbjct: 52  GRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNA 111

Query: 408 RRLALVWGIHCVVTEDASDSDDMVN--RACRIVVEQGFGKPGDRIIISAG--LPLGTPGS 463
             L  +   H +     +    +         VV  G       +  +A   +P     +
Sbjct: 112 AMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDA 171

Query: 464 TNMLRIAYIGADGL 477
              L     G   +
Sbjct: 172 GCFLLAEQFGCKQM 185


>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
           trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
           c.8.1.1 d.142.1.5 PDB: 2x0s_A
          Length = 913

 Score = 29.0 bits (64), Expect = 2.3
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 17/105 (16%)

Query: 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--- 212
           R GI++P+ +        +    +     +     + +  +   ++L  IR+ + +    
Sbjct: 694 RLGITYPEIYNMQVRAIIEAAIAVSEEGSSVIP-EIMVPLVGKKEELSLIREEVVKTAEA 752

Query: 213 -----------KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246
                       +G M  IE PRA   A  I Q +D       DL
Sbjct: 753 VITKSGKRVHYTVGTM--IEVPRAAVTADSIAQKADFFSFGTNDL 795


>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
          Length = 642

 Score = 28.7 bits (63), Expect = 2.9
 Identities = 11/78 (14%), Positives = 28/78 (35%)

Query: 198 SADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPG 257
               L ++       K     ++++   I   S +++    V     D  +  + +    
Sbjct: 482 KPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATV 541

Query: 258 IQKKLIRIARQLGKPVVI 275
             + +++ A Q  KP V+
Sbjct: 542 FPRAVMKAALQHNKPFVL 559


>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
           HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
           1y11_A*
          Length = 407

 Score = 28.4 bits (63), Expect = 3.3
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 34/169 (20%)

Query: 262 LIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPV 321
              I+   G  + +  ++  ++          V D    V   AD               
Sbjct: 69  AREISENYGVDLELLQRVQRAV---GLA---RVDDPDAVVHMRAD--------------G 108

Query: 322 DAVRTM-SLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380
           +A       V      D   L +R L                    AE +R +A+     
Sbjct: 109 EAAARAQRFVELGLNPDQVVLVVRVLAE-------------GLSHAAEAMRYTALEAIMR 155

Query: 381 SGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429
            GAT L  A+    L    +  +    + +  +   H + TE  +  + 
Sbjct: 156 PGATELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGER 204


>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
           {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
           PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
           2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
          Length = 335

 Score = 28.4 bits (62), Expect = 3.5
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRSL---RRI-EPNETGADVISSAARQIAET 369
            + G+Y  + V T   +    +    W+  R+    RR    +E+ A + + A R+    
Sbjct: 16  LSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSN 75

Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
             LSA         T     +  P   ++A S   +      L  G   
Sbjct: 76  AGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKGILGFDLSAGAAG 124


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.4 bits (62), Expect = 3.9
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 151 ISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALS------FIQSADDLLE 204
           I+ ADR     P++    +   +K  ++L AA +  E +W   +      + Q   + +E
Sbjct: 74  IAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132

Query: 205 IRKIISQNKIGLMSKIEKPRA 225
             KI   N+I   +  ++P A
Sbjct: 133 KNKI--NNRIADKAFYQQPDA 151


>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing
           independent processing; 2.2A {Xenopus laevis} SCOP:
           d.294.1.1
          Length = 292

 Score = 28.3 bits (63), Expect = 4.5
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 68  IDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGS 103
           I LQG    V   +N   D     +F   +++ L S
Sbjct: 35  ISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKS 70


>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
           protein repair, deamidation, post-translational
           modification; HET: SAH; 1.80A {Thermotoga maritima}
           SCOP: c.66.1.7 d.197.1.1
          Length = 317

 Score = 28.1 bits (62), Expect = 4.6
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 20/114 (17%)

Query: 379 TASGATGLRAARE-RPKLEIIALSP---MIQTARRLALVWGIHCV--VTEDASDSDDMVN 432
             +G      +R    K  ++++     + + A+R     GI  V  V  D        +
Sbjct: 84  GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143

Query: 433 RACRIVVEQGFG----------KPGDRIIISAGLPLGTPGSTNMLRIAYIGADG 476
               I V  G            K G R+I+    P+    S       +   D 
Sbjct: 144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIV----PINLKLSRRQPAFLFKKKDP 193


>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
           aminotransferase, csgid; 2.05A {Bacillus anthracis}
          Length = 452

 Score = 28.1 bits (62), Expect = 5.0
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 395 LEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD--MVNRACRIVVEQGFGKPGDRIII 452
            E I   P++   R   L+ GI  V  ++  +  D   +        E+G       II 
Sbjct: 359 KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL------IIG 412

Query: 453 SAGLPLGTPGSTNMLRIA 470
             G+        N+L +A
Sbjct: 413 RNGMTTAGYN--NILTLA 428


>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
           structural genomics center for infectious disease; HET:
           LLP; 1.80A {Mycobacterium smegmatis}
          Length = 451

 Score = 27.6 bits (61), Expect = 5.6
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%)

Query: 396 EIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAG 455
            + A    I   R    +  +  V         D+    C      G       +I+ + 
Sbjct: 365 RLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAG-------VIVLSC 417

Query: 456 LPLGTPGSTNMLRIA 470
              G     N++R  
Sbjct: 418 GTYG-----NVVRFL 427


>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase;
           1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1
           d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A
           2r82_A 2fm4_A
          Length = 873

 Score = 27.8 bits (61), Expect = 6.0
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 187 EVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246
           E+ +V    ++ A+ + + +    Q  IG M  IE PRA   A  I + ++       DL
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKGSDMQYHIGTM--IEIPRAALTADAIAEEAEFFSFGTNDL 769


>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
           eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
           glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
          Length = 540

 Score = 27.6 bits (61), Expect = 6.1
 Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 197 QSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS------DAVMVARGDLGVEM 250
           +   ++ ++  I     +     +  P  ++ A             D V  +  +  + +
Sbjct: 294 EIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLL 353

Query: 251 ALELIPGIQKKLIR 264
             +L+   Q   I+
Sbjct: 354 NNKLLTFGQFSCIK 367


>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid
           metabolism, structural genomics, NPPSFA; 2.10A {Aquifex
           aeolicus VF5}
          Length = 309

 Score = 27.6 bits (60), Expect = 6.3
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS---LRRIEPNETGADVISSAARQIAETL 370
             +G Y    V T   +    +    W+  R+    RRI   ET   + + AA++     
Sbjct: 6   IGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREA 65

Query: 371 RLSA--IFCYTASGATG 385
            LS   +     +  T 
Sbjct: 66  NLSPEELDLIILATLTP 82


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)

Query: 362 AARQIAETLRLSAIFCYTASGATGL--RAARE 391
           A +++  +L+L     Y    A  L  +A  E
Sbjct: 21  ALKKLQASLKL-----YADDSAPALAIKATME 47


>1sx5_A Type II restriction enzyme ecorv; endonuclease, protein-DNA
           complex, hydrolase/DNA complex; 1.50A {Escherichia coli}
           SCOP: c.52.1.2 PDB: 1stx_A 1eon_A* 1eo3_A* 1eo4_A*
           1eoo_A* 1eop_A* 1rve_A 2b0d_A 2b0e_A 1b94_A* 1az3_A
           1az0_A* 1b95_A* 1bgb_A* 1bsu_A* 1bua_A* 1rv5_A 1rva_A*
           1rvb_A* 1rvc_A* ...
          Length = 244

 Score = 27.5 bits (61), Expect = 6.6
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)

Query: 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKI 220
           R DL  AL      +     I       +I  + S   +  +S I
Sbjct: 3   RSDLINALYDENQKYDVCGII---SAEGKIYPLGSDTAV--LSTI 42


>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
           PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
           3ac0_A*
          Length = 845

 Score = 27.4 bits (60), Expect = 6.9
 Identities = 36/249 (14%), Positives = 76/249 (30%), Gaps = 20/249 (8%)

Query: 40  HTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKD 99
              +       K I  +   S        D +        ++N   + ++ +      K 
Sbjct: 378 EVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKV 437

Query: 100 SLGSSDRVMLPHPEI------FASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISI 153
           +  +       H ++      F     G  +  +DG     +Q  G G      +    I
Sbjct: 438 NRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSG---LFYLNDELI 494

Query: 154 ADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNK 213
            D+K      +F       ++ ++     L+  +V  V + +       L         +
Sbjct: 495 IDQKHNQERGSFCFGAGTKERTKK---LTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQ 551

Query: 214 IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMA-------LELIPGIQKKLIRIA 266
            G++  I+    I  A+E+    D  ++  G  G           ++L P    +L+R  
Sbjct: 552 AGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDL-PKRTNELVRAV 610

Query: 267 RQLGKPVVI 275
            +     VI
Sbjct: 611 LKANPNTVI 619


>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
           ATP-binding, DNA- binding, cell division, transmembrane,
           inner membrane; HET: DNA ATG; 2.25A {Pseudomonas
           aeruginosa} PDB: 2iuu_A*
          Length = 574

 Score = 27.3 bits (60), Expect = 7.9
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 421 TEDASDSDDMVNRACRIVVEQGFG 444
           + + S+ D + + A R V E    
Sbjct: 495 SGEGSEDDPLYDEAVRFVTESRRA 518


>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics; 1.60A {Pseudomonas syringae PV}
          Length = 233

 Score = 27.2 bits (59), Expect = 8.9
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 232 IIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQM 279
           ++ +        G L V+   +++  IQK L++ AR     V+    +
Sbjct: 27  VVDMQKVFCEPTGALYVKSTADIVQPIQK-LLQAARAAQVMVIYLRHI 73


>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA
           binding, high salt, solution structure, DNA binding
           protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP:
           a.49.1.1
          Length = 91

 Score = 27.1 bits (60), Expect = 9.2
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 362 AARQIAETLRLSAIFCYTASGATGL---RAARERPKLEI 397
           A R +  +LRL+A+  +           R A     L++
Sbjct: 45  ALRILNHSLRLAAMTAHGKGERVNEDYLRQAFRELDLDV 83


>3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural
           genomics, seattle structural genomics center for
           infectious disease; HET: PLP; 1.90A {Giardia lamblia
           atcc 50803}
          Length = 448

 Score = 27.1 bits (59), Expect = 9.6
 Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 18  FSEDVINRLHEEGTDVF------RINMSHTSHDKMCELIKKIRAV 56
            + + ++ L E+   ++      R++M   +      + + I   
Sbjct: 397 LTPEHVDYLKEK-WSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,990,091
Number of extensions: 189198
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 57
Length of query: 480
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 384
Effective length of database: 3,365,806
Effective search space: 1292469504
Effective search space used: 1292469504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)