RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] (480 letters) >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Score = 490 bits (1263), Expect = e-139 Identities = 141/471 (29%), Positives = 247/471 (52%), Gaps = 9/471 (1%) Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 +++ KI+ T+GP + SE+++ ++ + G +V R+N SH + + + I+ +R V ++ + Sbjct: 1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60 Query: 64 IGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIG 121 IL+D +GP+ R K + V L GQ FT +K +G+S+ V + + + +G Sbjct: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120 Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181 + +L+DDG + + V + CKV+ + + KG++ P + AL +KD++DL Sbjct: 121 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180 Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKIISQNK---IGLMSKIEKPRAIEYASEIIQLSDA 238 + VD+VA SFI+ D++EIR+ + + I ++SKIE + EI++ SD Sbjct: 181 GCE-QGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDG 239 Query: 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA 298 +MVARGDLGVE+ +E + QK +I + K V+ AT ML+SM+ +P PT AE DVA Sbjct: 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVA 299 Query: 299 TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADV 358 A+ + DA+MLS E+A G YP++AV M+ + +R + Sbjct: 300 NAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR--VMNSRLEFNNDNRKLRITEA 357 Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418 + A + AE L I T G + + P I+AL+ +TA +L L G+ Sbjct: 358 VCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVP 417 Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469 + ++ + +DD + ++ G GD +++ +G + G+TN + Sbjct: 418 QLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVP-SGTTNTASV 467 >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A Length = 499 Score = 474 bits (1221), Expect = e-134 Identities = 147/483 (30%), Positives = 243/483 (50%), Gaps = 15/483 (3%) Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62 N R +II T+GPS+ S + + L + G V R+N SH SH+ I +R Sbjct: 18 NYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGV 77 Query: 63 PIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSL---GSSDRVMLPHPEIFASIK 119 I I +D +GP+ R G+F + G + + G+ D+ + + + ++ Sbjct: 78 NIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVR 137 Query: 120 IGDRLLIDDGRVKLCVQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178 G+ + IDDG + L VQ + ++C V +I+DR+G++ P + A++ KDR D Sbjct: 138 PGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVD 197 Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLS 236 L ++ VD + SFI+SA+ + ++RK + I ++ KIE + ++ II+ S Sbjct: 198 LQFGVE-QGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEES 256 Query: 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296 D +MVARGDLGVE+ E + QK LI GKPV+ ATQMLESM +P PTRAEVSD Sbjct: 257 DGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSD 316 Query: 297 VATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERD-SSWLEMRSLRRIEPN-ET 354 VA AVF AD +MLS ETA G YP + V+ M+ + A+ + ++ S+++++ + Sbjct: 317 VANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMS 376 Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVW 414 + + S+A + A+ + +G + A+ RP I+ ++ +QT R+L + Sbjct: 377 ADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQ 436 Query: 415 GIHCVVTE-----DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469 G+ V + + V +G+ + GD ++ G N RI Sbjct: 437 GVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHA-DHKVKGYANQTRI 495 Query: 470 AYI 472 + Sbjct: 496 LLV 498 >3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Score = 453 bits (1167), Expect = e-128 Identities = 161/483 (33%), Positives = 253/483 (52%), Gaps = 14/483 (2%) Query: 2 VNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRS 60 V R+ +II T+GPS + + + L ++G V R+N SH H+ + ++ IR A + R Sbjct: 49 VTQRKTQIICTIGPSCNNVESLIGLIDKGMSVARLNFSHGDHESHFKTLQNIREAAKARP 108 Query: 61 RRPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASI 118 +GI++D +GP+ R G K ++L GQ + + LG+S+ + + + S+ Sbjct: 109 HSTVGIMLDTKGPEIRTGMLEGGKPIELKAGQTLKITTDYSMLGNSECISCSYSLLPKSV 168 Query: 119 KIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178 +IG +LI DG + V E G FI CKV+ ++I +RK ++ P + + KDR D Sbjct: 169 QIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMNLPGCKVHLPIIGDKDRHD 228 Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYA 229 + +D++ALSF+Q+ D+ R+IIS+N I ++SKIE + Sbjct: 229 IVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINF 288 Query: 230 SEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFP 289 I SD +MVARGDLG+E+ E I QK +I GKPVV ATQMLESM+ S P Sbjct: 289 DSICSESDGIMVARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRP 348 Query: 290 TRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR- 348 TRAE++DVA AV + +D +MLS ETA+G++P DAV MS V + AE + + Sbjct: 349 TRAEMTDVANAVLDGSDCVMLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHS 408 Query: 349 -IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTA 407 + + I+ +A + A + I T +G T ++ RP IIA + + A Sbjct: 409 SVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVA 468 Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNML 467 R L + G+ V S+ +++ A + E+ + GD I G+ PGS N++ Sbjct: 469 RGLKIARGVKTYVLNSIHHSEVVISNALALAKEESLIESGDFAIAVHGVKESCPGSCNLM 528 Query: 468 RIA 470 +I Sbjct: 529 KIV 531 >3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} Length = 520 Score = 449 bits (1157), Expect = e-127 Identities = 155/474 (32%), Positives = 253/474 (53%), Gaps = 6/474 (1%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63 ++ I+ TLGP+ S + + +L + G D+ R N SH SH+ E+ + A ELR Sbjct: 46 KKTHIVCTLGPACKSVETLVKLIDAGMDICRFNFSHGSHEDHKEMFNNVLKAQELRPNCL 105 Query: 64 IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGD 122 +G+L+D +GP+ R G N +V L EG L + + LG + + ++ S+K G+ Sbjct: 106 LGMLLDTKGPEIRTGFLKNKEVHLKEGSKLKLVTDYEFLGDETCIACSYKKLPQSVKPGN 165 Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182 +LI DG V V E + +V+ I +RK ++ P+ + +++KD+ D+ Sbjct: 166 IILIADGSVSCKVLETHEDHVITEVLNSAVIGERKNMNLPNVKVDLPIISEKDKNDILNF 225 Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNK--IGLMSKIEKPRAIEYASEIIQLSDAVM 240 +++A SFIQSADD+ IR ++ I ++ KIE I + +I+ SD +M Sbjct: 226 AIPMGCNFIAASFIQSADDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIM 285 Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 +ARGDLG+E++ E + QK +I GKP++ ATQMLESM +P PTRAEV+DVA A Sbjct: 286 IARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANA 345 Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEM--RSLRRIEPNETGADV 358 V + D +MLS ETA G +PV+AV MS + AE + + + IE + + Sbjct: 346 VLDGTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEA 405 Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418 ++ +A + AE+++ S I T +G T A+ +P I+ALS T + L + G+ C Sbjct: 406 VARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRGVTC 465 Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 + +D ++ A I ++ K GD +I G+ G TN++++ I Sbjct: 466 IKVGSFQGTDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEEVSGGTNLMKVVQI 519 >2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Score = 394 bits (1014), Expect = e-110 Identities = 180/474 (37%), Positives = 281/474 (59%), Gaps = 6/474 (1%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 R+ KI+ST+GP+S S D + +L E G +V R+N SH H++ I IR R+ R + Sbjct: 3 RKTKIVSTIGPASESVDKLVQLMEAGMNVARLNFSHGDHEEHGRRIANIREAAKRTGRTV 62 Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRL 124 IL+D +GP+ R N ++L EG + + LG+ +++ + +P + + +G ++ Sbjct: 63 AILLDTKGPEIRTHNMENGAIELKEGSKLVISMSEVLGTPEKISVTYPSLIDDVSVGAKI 122 Query: 125 LIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182 L+DDG + L V K G I V+ G + ++KG++ P + +T+KDR D+ Sbjct: 123 LLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGVKVNLPGITEKDRADILFG 182 Query: 183 LQTCEVDWVALSFIQSADDLLEIRKII---SQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239 ++ +D++A SF++ A D+LEIR+++ I +++KIE + EI++ +D + Sbjct: 183 IR-QGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGL 241 Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 MVARGDLGVE+ E +P IQK LI+ + LGKPV+ ATQML+SM +P PTRAE SDVA Sbjct: 242 MVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVAN 301 Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359 A+F+ DA+MLS ETA+G YPV+AV+TM +A E+ ++ S R E T D I Sbjct: 302 AIFDGTDAVMLSGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTKESQTTITDAI 361 Query: 360 SSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCV 419 + A L ++AI T SG T A+ RPK IIA++ +RRLALVWG++ Sbjct: 362 GQSVAHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLALVWGVYTK 421 Query: 420 VTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473 + +D+M++ A V G K GD ++I+AG+P+G GSTN++++ I Sbjct: 422 EAPHVNTTDEMLDVAVDAAVRSGLVKHGDLVVITAGVPVGETGSTNLMKVHVIS 475 >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Score = 369 bits (948), Expect = e-103 Identities = 141/477 (29%), Positives = 250/477 (52%), Gaps = 7/477 (1%) Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSR 61 R +I+ T+GP+ ++ D + ++ + G +V R+N SH H+ ++ I+ A++ R Sbjct: 34 TAHRTRIVCTMGPACWNVDTLVKMIDAGMNVCRLNFSHGDHETHARTVQNIQEAMKQRPE 93 Query: 62 RPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIK 119 + IL+D +GP+ R G + K + L +G + + + +G + + + S+K Sbjct: 94 ARLAILLDTKGPEIRTGFLKDHKPITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVK 153 Query: 120 IGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179 G+ +LI DG + + V E G ++ + +I +RK ++ P+ + + +KD+ D+ Sbjct: 154 PGNTILIADGSLSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDI 213 Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237 +++A SF+QSADD+ IR ++ I ++ KIE + EI+ +D Sbjct: 214 LNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEAD 273 Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297 +M+ARGDLG+E+ E + QK +I +GKPV+ ATQMLESM+ +P PTRAE +DV Sbjct: 274 GIMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADV 333 Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSW--LEMRSLRRIEPNETG 355 A AV + D +MLS ETA+G +PV V TM+ + AE + L + P + Sbjct: 334 ANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPIST 393 Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415 + ++ AA + AE + + I T +G T A+ RP I+ALS T + L ++ G Sbjct: 394 QEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRG 453 Query: 416 IHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 + + +D ++ A + E+ G+ I+ G+ GS+N+L++ + Sbjct: 454 VTTMQVPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLLKVLTV 510 >3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* Length = 550 Score = 357 bits (916), Expect = 4e-99 Identities = 170/490 (34%), Positives = 262/490 (53%), Gaps = 24/490 (4%) Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVE------L 58 R II T+GP+S S + + + + G +V R+N SH +H+ E IK +R Sbjct: 62 RNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDP 121 Query: 59 RSRRPIGILIDLQGPKFRVGKFANS---KVDLTEGQIFTLDNKDSL---GSSDRVMLPHP 112 RP+ + +D +GP+ R G S +V+L +G + ++ + + L + Sbjct: 122 ILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYK 181 Query: 113 EIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALT 172 I +++G ++ +DDG + L V++KG F+ +V G S+ +KG++ P + A++ Sbjct: 182 NICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVS 241 Query: 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYAS 230 +KD +DL ++ D V SFI+ A D+ E+RK++ + I ++SKIE + Sbjct: 242 EKDIQDLKFGVEQDV-DMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFD 300 Query: 231 EIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPT 290 EI++ SD +MVARGDLG+E+ E + QK +I + GKPV+ ATQMLESM+ P PT Sbjct: 301 EILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPT 360 Query: 291 RAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIE 350 RAE SDVA AV + AD IMLS ETA G YP++AVR L+A AE L++ R Sbjct: 361 RAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRL 420 Query: 351 PNETG--ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTAR 408 T + + A + + AI T SG + + AR RP+ IIA++ QTAR Sbjct: 421 APITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTAR 480 Query: 409 RLALVWGIHCVVTED------ASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462 + L GI V+ +D A D D VN A + +GF K GD +I+ G G+ G Sbjct: 481 QAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGS-G 539 Query: 463 STNMLRIAYI 472 TN +R+ + Sbjct: 540 FTNTMRVVPV 549 >1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Score = 352 bits (903), Expect = 1e-97 Identities = 152/486 (31%), Positives = 243/486 (50%), Gaps = 18/486 (3%) Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAV-ELRSR 61 +LRR II T+GP + + + + L + G ++ R+N SH S++ +I R EL Sbjct: 17 DLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPG 76 Query: 62 RPIGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLDNKDSLGSSD---RVMLPHPEIFAS 117 RP+ I +D +GP+ R G N + D + + + + I Sbjct: 77 RPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKV 136 Query: 118 IKIGDRLLIDDGRVKLCVQEK-GIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDR 176 I G + +DDG + V E +K K + I KG++ P T + AL++KD+ Sbjct: 137 ISAGRIIYVDDGVLSFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDK 196 Query: 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQ 234 EDL ++ V SFI++A+D+L IR+++ + + ++ KIE + + EI++ Sbjct: 197 EDLRFGVKNGV-HMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILK 255 Query: 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEV 294 ++D VMVARGDLG+E+ + +QKKLI + GKPV+ ATQMLESM +P PTRAEV Sbjct: 256 VTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEV 315 Query: 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR--IEPN 352 SDV A+ + AD +MLS ETA G+YP++AV TM+ A AE+ ++L R Sbjct: 316 SDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKP 375 Query: 353 ETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLAL 412 + + ++++A + AI + SG T ++ RP II ++ + AR L Sbjct: 376 TSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHL 435 Query: 413 VWGIHCVVTEDAS------DSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNM 466 G+ V E D + +N E G K GD + G G G +N Sbjct: 436 YRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGA-GHSNT 494 Query: 467 LRIAYI 472 L+++ + Sbjct: 495 LQVSTV 500 >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Length = 256 Score = 54.2 bits (130), Expect = 7e-08 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%) Query: 213 KIGLMSKIEKPRAIEYASEIIQLS--DAVMVARGDLGVEMALELIPG------IQKKLIR 264 I ++ +IE + ++ I D + V DL + + + Sbjct: 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFN 204 Query: 265 IARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETAS 316 A GKP I + R + AT V +D + + T Sbjct: 205 RASAHGKPSGI-------LAPVEADARRYLEWGATFVAVGSDLGVFRSATQK 249 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.9 bits (119), Expect = 1e-06 Identities = 68/427 (15%), Positives = 115/427 (26%), Gaps = 183/427 (42%) Query: 57 ELRS----RRP-IGILIDLQGPKFRVGKFANSKVDLTEGQIFT--------LDNKDSLGS 103 ELR +G LI + L ++FT L+N + Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227 Query: 104 SD-----RVMLPHPEIFASIKIGDRLLIDDGRVKLC---------------VQE--KGI- 140 D + P LI G ++L ++ KG Sbjct: 228 KDYLLSIPISCP--------------LI--GVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271 Query: 141 ----GFIKCKVIAGISIAD---------RKGIS------------FPDTFLT-------- 167 G + I+ D RK I+ +P+T L Sbjct: 272 GHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328 Query: 168 -------TQALTQKD--REDLHAALQTC-----EVDWVALSFIQSADDLLEIRKIIS--- 210 + L+ + +E + + V +S + A +L ++S Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPP 383 Query: 211 QNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLG 270 Q+ GL + K +A S + Q +R IP ++KL Sbjct: 384 QSLYGLNLTLRKAKA---PSGLDQ-------SR-----------IPFSERKL-------- 414 Query: 271 KPVVIATQMLESMVTSPF--PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMS 328 + + L V SPF SD+ + + + +A+ PV Sbjct: 415 ---KFSNRFLP--VASPFHSHLLVPASDLINKDLVKNN-VSFNAK--DIQIPVYDTFD-- 464 Query: 329 LVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAE-------TLRLSA--IFCYT 379 D +R L + I T + A I + Sbjct: 465 ------GSD-----LRVL--------SGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505 Query: 380 ASGATGL 386 GA+GL Sbjct: 506 PGGASGL 512 Score = 44.9 bits (106), Expect = 4e-05 Identities = 61/384 (15%), Positives = 115/384 (29%), Gaps = 141/384 (36%) Query: 163 DTFLT-----TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLM 217 + F T+ D T + V F+ L+E +K+G Sbjct: 35 EQFNKILPEPTEGFAADDE-------PTTPAELVG-KFLGYVSSLVE------PSKVGQF 80 Query: 218 SKIEKPRAI--EYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRI---ARQLGKP 272 ++ E+ + ++ +D +A L + K+LI+ AR Sbjct: 81 DQV--LNLCLTEFENCYLEGNDIHALAAKLLQEN---DTTLVKTKELIKNYITAR----- 130 Query: 273 VVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVAS 332 M PF ++ +A+F G+ + +++ Sbjct: 131 ---------IMAKRPFDKKSN-----SALFRAV---------GEGN-----AQLVAIFGG 162 Query: 333 SAERDSSWLEMRSLRRI-EPNETGADVISSAARQIAETLRL--SAIFCYTASGATG---- 385 D + E+R L + D+I +A ++E +R A +T G Sbjct: 163 QGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQ----GLNIL 216 Query: 386 --LRAARERPKLEIIA---LS-PMI---Q------TARRLALVWGI-------------- 416 L P + + +S P+I Q TA+ + G Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATG 272 Query: 417 HC--VVTEDA---SDSDDMVNRACRIVVE----------QGFGK----PGDRII---ISA 454 H +VT A +DS + + R + + + P I+ + Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS--ILEDSLEN 330 Query: 455 GLPLGTPGSTNMLRIAYIGADGLS 478 G P + ML I+ L+ Sbjct: 331 N--EGVP--SPMLSIS-----NLT 345 >2ols_A Phosphoenolpyruvate synthase; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Neisseria meningitidis MC58} Length = 794 Score = 31.4 bits (70), Expect = 0.53 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 29/116 (25%) Query: 190 WVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYASEIIQLSDAVM 240 + + F+++ + + K + +N ++ +M E P A + +Q D Sbjct: 643 EIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMM--CELPSNAVLAEQFLQYFDGFS 700 Query: 241 VARGDL-----GV--------EMALELIPGIQKKLIRI----ARQLGKPVVIATQM 279 + D+ G+ E E P + K ++ + R+ K V I Q Sbjct: 701 IGSNDMTQLTLGLDRDSGLVSESFDERNPAV-KVMLHLAISACRKQNKYVGICGQG 755 >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Length = 313 Score = 30.0 bits (66), Expect = 1.3 Identities = 7/130 (5%), Positives = 32/130 (24%), Gaps = 4/130 (3%) Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS----LRRIEPNETGADVISSAARQIAET 369 G+Y + + + + W+ + + ++ +D+ A+ + Sbjct: 6 KGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIAD 65 Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429 + AT ++ + + + + Sbjct: 66 AGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQY 125 Query: 430 MVNRACRIVV 439 + + ++ Sbjct: 126 VQSGDYHNIL 135 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 29.9 bits (67), Expect = 1.4 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 33/80 (41%) Query: 380 ASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC--------VVTEDASDSDDMV 431 + RA R P L I+ + C + E S D+V Sbjct: 3 TRESIDKRAGRRGPNLNIV-----------------LTCPECKVYPPKIVERFS-EGDVV 44 Query: 432 NRACRIVVEQGFGKPGDRII 451 C +V+ D+++ Sbjct: 45 CALCGLVLS-------DKLV 57 >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 Score = 29.6 bits (66), Expect = 1.6 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 10/133 (7%) Query: 355 GADVISSAARQIAETLRLSAIFCYTASGAT-------GLRAARERPKLEIIALSPMIQTA 407 GAD I ++ + L + T +G GL L +A S Q Sbjct: 54 GADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113 Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRAC---RIVVEQGFGKPGDRIIISAGLPLGTPGST 464 LA + V + D + R VV F + +P + Sbjct: 114 HILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTG 173 Query: 465 NMLRIAYIGADGL 477 L GA GL Sbjct: 174 AFLLADAFGAAGL 186 >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 Score = 29.2 bits (65), Expect = 2.1 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 11/134 (8%) Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATG---LRAARE----RPKLEIIALSPMIQTA 407 G + +I + + T +G A L + S Q A Sbjct: 52 GRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNA 111 Query: 408 RRLALVWGIHCVVTEDASDSDDMVN--RACRIVVEQGFGKPGDRIIISAG--LPLGTPGS 463 L + H + + + VV G + +A +P + Sbjct: 112 AMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDA 171 Query: 464 TNMLRIAYIGADGL 477 L G + Sbjct: 172 GCFLLAEQFGCKQM 185 >1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 2x0s_A Length = 913 Score = 29.0 bits (64), Expect = 2.3 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 17/105 (16%) Query: 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--- 212 R GI++P+ + + + + + + + ++L IR+ + + Sbjct: 694 RLGITYPEIYNMQVRAIIEAAIAVSEEGSSVIP-EIMVPLVGKKEELSLIREEVVKTAEA 752 Query: 213 -----------KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246 +G M IE PRA A I Q +D DL Sbjct: 753 VITKSGKRVHYTVGTM--IEVPRAAVTADSIAQKADFFSFGTNDL 795 >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* Length = 642 Score = 28.7 bits (63), Expect = 2.9 Identities = 11/78 (14%), Positives = 28/78 (35%) Query: 198 SADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPG 257 L ++ K ++++ I S +++ V D + + + Sbjct: 482 KPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATV 541 Query: 258 IQKKLIRIARQLGKPVVI 275 + +++ A Q KP V+ Sbjct: 542 FPRAVMKAALQHNKPFVL 559 >1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Length = 407 Score = 28.4 bits (63), Expect = 3.3 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 34/169 (20%) Query: 262 LIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPV 321 I+ G + + ++ ++ V D V AD Sbjct: 69 AREISENYGVDLELLQRVQRAV---GLA---RVDDPDAVVHMRAD--------------G 108 Query: 322 DAVRTM-SLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380 +A V D L +R L AE +R +A+ Sbjct: 109 EAAARAQRFVELGLNPDQVVLVVRVLAE-------------GLSHAAEAMRYTALEAIMR 155 Query: 381 SGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429 GAT L A+ L + + + + + H + TE + + Sbjct: 156 PGATELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGER 204 >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Length = 335 Score = 28.4 bits (62), Expect = 3.5 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 4/109 (3%) Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRSL---RRI-EPNETGADVISSAARQIAET 369 + G+Y + V T + + W+ R+ RR +E+ A + + A R+ Sbjct: 16 LSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSN 75 Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418 LSA T + P ++A S + L G Sbjct: 76 AGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKGILGFDLSAGAAG 124 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.4 bits (62), Expect = 3.9 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Query: 151 ISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALS------FIQSADDLLE 204 I+ ADR P++ + +K ++L AA + E +W + + Q + +E Sbjct: 74 IAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132 Query: 205 IRKIISQNKIGLMSKIEKPRA 225 KI N+I + ++P A Sbjct: 133 KNKI--NNRIADKAFYQQPDA 151 >2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1 Length = 292 Score = 28.3 bits (63), Expect = 4.5 Identities = 10/36 (27%), Positives = 15/36 (41%) Query: 68 IDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGS 103 I LQG V +N D +F +++ L S Sbjct: 35 ISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKS 70 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 Score = 28.1 bits (62), Expect = 4.6 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 20/114 (17%) Query: 379 TASGATGLRAARE-RPKLEIIALSP---MIQTARRLALVWGIHCV--VTEDASDSDDMVN 432 +G +R K ++++ + + A+R GI V V D + Sbjct: 84 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 Query: 433 RACRIVVEQGFG----------KPGDRIIISAGLPLGTPGSTNMLRIAYIGADG 476 I V G K G R+I+ P+ S + D Sbjct: 144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIV----PINLKLSRRQPAFLFKKKDP 193 >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 Score = 28.1 bits (62), Expect = 5.0 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 395 LEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD--MVNRACRIVVEQGFGKPGDRIII 452 E I P++ R L+ GI V ++ + D + E+G II Sbjct: 359 KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL------IIG 412 Query: 453 SAGLPLGTPGSTNMLRIA 470 G+ N+L +A Sbjct: 413 RNGMTTAGYN--NILTLA 428 >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} Length = 451 Score = 27.6 bits (61), Expect = 5.6 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%) Query: 396 EIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAG 455 + A I R + + V D+ C G +I+ + Sbjct: 365 RLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAG-------VIVLSC 417 Query: 456 LPLGTPGSTNMLRIA 470 G N++R Sbjct: 418 GTYG-----NVVRFL 427 >1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Length = 873 Score = 27.8 bits (61), Expect = 6.0 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 187 EVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246 E+ +V ++ A+ + + + Q IG M IE PRA A I + ++ DL Sbjct: 712 ELKFVKDVVVEVAEQVKKEKGSDMQYHIGTM--IEIPRAALTADAIAEEAEFFSFGTNDL 769 >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Length = 540 Score = 27.6 bits (61), Expect = 6.1 Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 6/74 (8%) Query: 197 QSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS------DAVMVARGDLGVEM 250 + ++ ++ I + + P ++ A D V + + + + Sbjct: 294 EIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLL 353 Query: 251 ALELIPGIQKKLIR 264 +L+ Q I+ Sbjct: 354 NNKLLTFGQFSCIK 367 >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5} Length = 309 Score = 27.6 bits (60), Expect = 6.3 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS---LRRIEPNETGADVISSAARQIAETL 370 +G Y V T + + W+ R+ RRI ET + + AA++ Sbjct: 6 IGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREA 65 Query: 371 RLSA--IFCYTASGATG 385 LS + + T Sbjct: 66 NLSPEELDLIILATLTP 82 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.7 bits (60), Expect = 6.6 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%) Query: 362 AARQIAETLRLSAIFCYTASGATGL--RAARE 391 A +++ +L+L Y A L +A E Sbjct: 21 ALKKLQASLKL-----YADDSAPALAIKATME 47 >1sx5_A Type II restriction enzyme ecorv; endonuclease, protein-DNA complex, hydrolase/DNA complex; 1.50A {Escherichia coli} SCOP: c.52.1.2 PDB: 1stx_A 1eon_A* 1eo3_A* 1eo4_A* 1eoo_A* 1eop_A* 1rve_A 2b0d_A 2b0e_A 1b94_A* 1az3_A 1az0_A* 1b95_A* 1bgb_A* 1bsu_A* 1bua_A* 1rv5_A 1rva_A* 1rvb_A* 1rvc_A* ... Length = 244 Score = 27.5 bits (61), Expect = 6.6 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%) Query: 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKI 220 R DL AL + I +I + S + +S I Sbjct: 3 RSDLINALYDENQKYDVCGII---SAEGKIYPLGSDTAV--LSTI 42 >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Score = 27.4 bits (60), Expect = 6.9 Identities = 36/249 (14%), Positives = 76/249 (30%), Gaps = 20/249 (8%) Query: 40 HTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKD 99 + K I + S D + ++N + ++ + K Sbjct: 378 EVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKV 437 Query: 100 SLGSSDRVMLPHPEI------FASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISI 153 + + H ++ F G + +DG +Q G G + I Sbjct: 438 NRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSG---LFYLNDELI 494 Query: 154 ADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNK 213 D+K +F ++ ++ L+ +V V + + L + Sbjct: 495 IDQKHNQERGSFCFGAGTKERTKK---LTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQ 551 Query: 214 IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMA-------LELIPGIQKKLIRIA 266 G++ I+ I A+E+ D ++ G G ++L P +L+R Sbjct: 552 AGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDL-PKRTNELVRAV 610 Query: 267 RQLGKPVVI 275 + VI Sbjct: 611 LKANPNTVI 619 >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574 Score = 27.3 bits (60), Expect = 7.9 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 421 TEDASDSDDMVNRACRIVVEQGFG 444 + + S+ D + + A R V E Sbjct: 495 SGEGSEDDPLYDEAVRFVTESRRA 518 >3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.60A {Pseudomonas syringae PV} Length = 233 Score = 27.2 bits (59), Expect = 8.9 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 232 IIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQM 279 ++ + G L V+ +++ IQK L++ AR V+ + Sbjct: 27 VVDMQKVFCEPTGALYVKSTADIVQPIQK-LLQAARAAQVMVIYLRHI 73 >1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1 Length = 91 Score = 27.1 bits (60), Expect = 9.2 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%) Query: 362 AARQIAETLRLSAIFCYTASGATGL---RAARERPKLEI 397 A R + +LRL+A+ + R A L++ Sbjct: 45 ALRILNHSLRLAAMTAHGKGERVNEDYLRQAFRELDLDV 83 >3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural genomics, seattle structural genomics center for infectious disease; HET: PLP; 1.90A {Giardia lamblia atcc 50803} Length = 448 Score = 27.1 bits (59), Expect = 9.6 Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 7/45 (15%) Query: 18 FSEDVINRLHEEGTDVF------RINMSHTSHDKMCELIKKIRAV 56 + + ++ L E+ ++ R++M + + + I Sbjct: 397 LTPEHVDYLKEK-WSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.135 0.378 Gapped Lambda K H 0.267 0.0564 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,990,091 Number of extensions: 189198 Number of successful extensions: 855 Number of sequences better than 10.0: 1 Number of HSP's gapped: 809 Number of HSP's successfully gapped: 57 Length of query: 480 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 384 Effective length of database: 3,365,806 Effective search space: 1292469504 Effective search space used: 1292469504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.5 bits)