BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] (480 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/480 (100%), Positives = 480/480 (100%) Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS Sbjct: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI Sbjct: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120 Query: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLH 180 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLH Sbjct: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLH 180 Query: 181 AALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 AALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM Sbjct: 181 AALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA Sbjct: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVIS 360 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVIS Sbjct: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVIS 360 Query: 361 SAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV 420 SAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV Sbjct: 361 SAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV 420 Query: 421 TEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLSGM 480 TEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLSGM Sbjct: 421 TEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLSGM 480 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 9/36 (25%), Positives = 23/36 (63%) Query: 279 MLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 ++E+++ P+ +A++ D+A ++ EAD + E+ Sbjct: 292 LIEAVMAPPYNGKADLPDLANSLQLEADRLFHIGES 327 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.135 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,388 Number of Sequences: 1233 Number of extensions: 10419 Number of successful extensions: 37 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 7 length of query: 480 length of database: 328,796 effective HSP length: 77 effective length of query: 403 effective length of database: 233,855 effective search space: 94243565 effective search space used: 94243565 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)