Query gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 100 out of 102 Neff 5.4 Searched_HMMs 23785 Date Mon May 30 11:37:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780443.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ahn_A Thaumatin-like protein; 39.0 19 0.0008 15.7 4.2 42 23-65 1-42 (222) 2 2vhk_A Thaumatin-I; kinetics o 31.3 25 0.0011 15.0 11.3 101 23-134 1-105 (206) 3 3g7m_A Xylanase inhibitor TL-X 31.1 25 0.0011 15.0 5.7 46 23-72 1-46 (151) 4 1jc9_A Techylectin-5A; fibrino 24.1 13 0.00054 16.7 -0.0 11 49-59 58-68 (269) 5 1jb0_F Photosystem 1 reaction 17.9 28 0.0012 14.7 0.6 11 23-33 26-36 (164) 6 1du5_A Zeamatin; beta sandwich 17.8 47 0.002 13.4 4.9 36 23-66 1-36 (206) 7 1tzs_X 23-MER peptide from PEL 14.8 34 0.0014 14.2 0.4 20 4-23 3-22 (26) 8 3m7o_A Lymphocyte antigen 86; 13.1 49 0.0021 13.3 0.8 70 2-79 1-76 (162) 9 1y0g_A Protein YCEI; lipid bin 12.1 53 0.0022 13.1 0.7 30 1-31 1-31 (191) 10 1pjv_A Cobatoxin 1, COTX1, GTI 11.0 45 0.0019 13.5 0.1 12 105-116 9-20 (32) No 1 >2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium} Probab=38.97 E-value=19 Score=15.73 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=29.4 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEEC Q ss_conf 7229831899848999999748885787546885788703740 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVV 65 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl 65 (141) |-|+|-|+.++.||.+|.-..+ ......|=|.++|++...+- T Consensus 1 aTiti~N~C~~tVWpg~~~~~g-~~~~~~gg~~l~~g~s~~~~ 42 (222) T 2ahn_A 1 ATISFKNNCPYMVWPGTLTSDQ-KPQLSTTGFELASQASFQLD 42 (222) T ss_dssp CEEEEEECSSSCBEEEEEEGGG-CCCCSCSBCCBCTTCEEEEE T ss_pred CEEEEEECCCCCCCEEECCCCC-CCCCCCCCEEECCCCEEEEE T ss_conf 9699997999974337678899-87668988860899658874 No 2 >2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* 2pe7_A* 1thv_A* ... Probab=31.32 E-value=25 Score=15.00 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=55.4 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC-CCCCCCEEEEEEEECCCCCCCCCCE-EEEECCCCE Q ss_conf 72298318998489999997488857875468857887037405-6766747999999538871205750-136507532 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK-GALHSRYYYLYAEGVSHSEHWAGNV-QMCVGQDEF 100 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~-g~l~~r~yY~yAe~~~~~~~w~G~~-~~Cv~~~~F 100 (141) |-|+|-|+-++.||.++. .+... ...|=+.++||+..++.. ...++..+- |+. +-..+++- .-|..-+= T Consensus 1 ATfti~N~C~~tVWp~~~--~~~~~-~~~gG~~L~~g~s~~~~v~~~~wsGriW--gRT---gCs~d~~g~~~C~TGdC- 71 (206) T 2vhk_A 1 ATFEIVNRCSYTVWAAAS--KGDAA-LDAGGRQLNSGESWTINVEPGTNGGKIW--ART---DCYFDDSGSGICKTGDC- 71 (206) T ss_dssp CEEEEEECSSSCEEEEEE--CSSSE-EEEEEEEECTTCEEEEECCTTCCSEEEE--EEB---SCEECTTSBEECSBSCC- T ss_pred CEEEEEECCCCCEEEECC--CCCCC-CCCCCEEECCCCEEEEECCCCCCCCEEE--CCC---CCCCCCCCCCEECCCCC- T ss_conf 969999799998856606--89988-7897766089974898738987412054--358---98788999620545789- Q ss_pred EEECCCCHHHCCCCCCCCEEEEE--CCCCEEEEEEE Q ss_conf 55253101227840028288760--79751789970 Q gi|254780443|r 101 NIVDIKNCYTRGYLRVGFTEYDT--GQHENWTVQLT 134 (141) Q Consensus 101 ~i~g~~dC~~RG~~~~~F~evDt--g~~~~wTv~Lt 134 (141) .|.-+|...|--.+-..|+.. ++++.|-|.|. T Consensus 72 --gg~l~C~~~G~pPaTlaEftl~~~~~d~YdvSlv 105 (206) T 2vhk_A 72 --GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNI 105 (206) T ss_dssp --TTBSSCSSCCCSSCCEEEEEEEETTEEEEEEECT T ss_pred --CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC T ss_conf --9836258889897302788714788765423000 No 3 >3g7m_A Xylanase inhibitor TL-XI; beta-sheets, xylan degradation, hydrolase inhibitor; HET: GOL; 2.91A {Triticum aestivum} Probab=31.11 E-value=25 Score=14.97 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=30.9 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCC Q ss_conf 72298318998489999997488857875468857887037405676674 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSR 72 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g~l~~r 72 (141) |-|+|-|+.++.||.++.-..+ ...|=+.++||+...+.-...++. T Consensus 1 a~~ti~N~C~~tVWpg~~~~~~----~~~gG~~L~pg~s~~~~~p~~wsG 46 (151) T 3g7m_A 1 APLTITNRCHFTVWPAVALVLA----QGGGGTELHPGASWSLDTPVIGSQ 46 (151) T ss_dssp CCEEEEECSSSCEEEEEEETTS----SCCEECCBCTTCEEEECCCSSEEE T ss_pred CCEEEEECCCCCEEEECCCCCC----CCCCCEECCCCCEEEEECCCCCCE T ss_conf 9289996999976243156788----899874259998799968988706 No 4 >1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1 Probab=24.10 E-value=13 Score=16.70 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.5 Q ss_pred EEEEEEEECCC Q ss_conf 87546885788 Q gi|254780443|r 49 MTEGWWQIPGN 59 (141) Q Consensus 49 ~seGWw~i~pg 59 (141) .+.|-+.|.|. T Consensus 58 ~~SGvY~I~p~ 68 (269) T 1jc9_A 58 RSSGGYRIWPK 68 (269) T ss_dssp CSCEEEEECCT T ss_pred CCCCEEEEECC T ss_conf 88705999638 No 5 >1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1 Probab=17.91 E-value=28 Score=14.74 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=7.8 Q ss_pred CCEEEECCCCC Q ss_conf 72298318998 Q gi|254780443|r 23 AGFRVCNGTKN 33 (141) Q Consensus 23 A~~~vCN~T~~ 33 (141) |+|+-|.+... T Consensus 26 agLtpC~es~a 36 (164) T 1jb0_F 26 AGLVPCKDSPA 36 (164) T ss_dssp GGCEEGGGCHH T ss_pred CCCCCCCCCHH T ss_conf 16860646999 No 6 >1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1 Probab=17.78 E-value=47 Score=13.43 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=26.3 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC Q ss_conf 72298318998489999997488857875468857887037405 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK 66 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~ 66 (141) |-|+|-|+-++.||.++. . ..++ ++++||+...+.. T Consensus 1 A~fti~N~C~~tVWp~~~-p-~~gg------~~l~~G~s~~~~v 36 (206) T 1du5_A 1 AVFTVVNQCPFTVWAASV-P-VGGG------RQLNRGESWRITA 36 (206) T ss_dssp CEEEEEECSSSCEEEEEE-T-TTEE------EEECTTCEEEEEC T ss_pred CEEEEEECCCCCCCCCCC-C-CCCC------EECCCCCEEEEEC T ss_conf 979999699998522300-5-7988------7218998589966 No 7 >1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Probab=14.78 E-value=34 Score=14.21 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHCCCCCCC Q ss_conf 89999999999743683547 Q gi|254780443|r 4 SFLICFCFGAMIFCSNVSFA 23 (141) Q Consensus 4 ~~l~~~~~~~~~~~~~~A~A 23 (141) -+|...+.++++++..||-| T Consensus 3 yllptaaagllllaaqpama 22 (26) T 1tzs_X 3 YLLPTAAAGLLLLAAQPAMA 22 (26) T ss_pred CCCHHHHHHHHHHHCCHHHH T ss_conf 21300787889994583776 No 8 >3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} Probab=13.10 E-value=49 Score=13.31 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHHHCC------CCCCCCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCCEEE Q ss_conf 57899999999997436------835472298318998489999997488857875468857887037405676674799 Q gi|254780443|r 2 LRSFLICFCFGAMIFCS------NVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYY 75 (141) Q Consensus 2 l~~~l~~~~~~~~~~~~------~~A~A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g~l~~r~yY 75 (141) |+.|.+++++.++++.+ +-+.-+-.+||.-... |..-|-|.... .+ -.|+|. .......+.-+..| T Consensus 1 m~~~~~a~l~~~l~~~~~~~~~~~~~wp~~~~C~~~~~e--v~y~~CD~~~~---~~-i~i~PC--~~~~g~n~~I~~~f 72 (162) T 3m7o_A 1 MNGVAAALLVWILTSPSSSDHGSENGWPKHTACNSGGLE--VVYQSCDPLQD---FG-LSIDQC--SKQIQSNLNIRFGI 72 (162) T ss_dssp -------------------------CCCCEEEEEETTEE--EEEEECCTTCC---CE-EEESSC--CSEECSSCEEEEEE T ss_pred CCHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEECCCCCE--EEEEECCCCCC---CE-ECCCCC--CCCCCCCEEEEEEE T ss_conf 941558999999853011035434768732167278967--99875798787---41-145898--65579818999999 Q ss_pred EEEE Q ss_conf 9999 Q gi|254780443|r 76 LYAE 79 (141) Q Consensus 76 ~yAe 79 (141) .-.+ T Consensus 73 ~~~~ 76 (162) T 3m7o_A 73 ILRQ 76 (162) T ss_dssp ECSS T ss_pred EECC T ss_conf 9852 No 9 >1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1 Probab=12.13 E-value=53 Score=13.11 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=13.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCCC-CCEEEECCC Q ss_conf 9578999999999974368354-722983189 Q gi|254780443|r 1 MLRSFLICFCFGAMIFCSNVSF-AGFRVCNGT 31 (141) Q Consensus 1 ~l~~~l~~~~~~~~~~~~~~A~-A~~~vCN~T 31 (141) |.+.+|.. .++++++.+..|+ +.+++=-+. T Consensus 1 Mkk~~~~l-~~~~l~~~~~~a~a~~~~id~~~ 31 (191) T 1y0g_A 1 MKKSLLGL-TFASLMFSAGSAVAADYKIDKEG 31 (191) T ss_dssp -----------------------CEEEECTTT T ss_pred CCHHHHHH-HHHHHHHHHCCCCCCCEEECCCC T ss_conf 93369999-99999976022036537976888 No 10 >1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2 Probab=11.02 E-value=45 Score=13.52 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=9.1 Q ss_pred CCCHHHCCCCCC Q ss_conf 310122784002 Q gi|254780443|r 105 IKNCYTRGYLRV 116 (141) Q Consensus 105 ~~dC~~RG~~~~ 116 (141) +.||..|||+.. T Consensus 9 dkdckrrgyrsg 20 (32) T 1pjv_A 9 DKDCKRRGYRSG 20 (32) T ss_dssp HHHHHTTTSSEE T ss_pred CCHHHHCCCCCC T ss_conf 506666175456 Done!