Query         gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs    100 out of 102
Neff          5.4 
Searched_HMMs 23785
Date          Mon May 30 11:37:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780443.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ahn_A Thaumatin-like protein;  39.0      19  0.0008   15.7   4.2   42   23-65      1-42  (222)
  2 2vhk_A Thaumatin-I; kinetics o  31.3      25  0.0011   15.0  11.3  101   23-134     1-105 (206)
  3 3g7m_A Xylanase inhibitor TL-X  31.1      25  0.0011   15.0   5.7   46   23-72      1-46  (151)
  4 1jc9_A Techylectin-5A; fibrino  24.1      13 0.00054   16.7  -0.0   11   49-59     58-68  (269)
  5 1jb0_F Photosystem 1 reaction   17.9      28  0.0012   14.7   0.6   11   23-33     26-36  (164)
  6 1du5_A Zeamatin; beta sandwich  17.8      47   0.002   13.4   4.9   36   23-66      1-36  (206)
  7 1tzs_X 23-MER peptide from PEL  14.8      34  0.0014   14.2   0.4   20    4-23      3-22  (26)
  8 3m7o_A Lymphocyte antigen 86;   13.1      49  0.0021   13.3   0.8   70    2-79      1-76  (162)
  9 1y0g_A Protein YCEI; lipid bin  12.1      53  0.0022   13.1   0.7   30    1-31      1-31  (191)
 10 1pjv_A Cobatoxin 1, COTX1, GTI  11.0      45  0.0019   13.5   0.1   12  105-116     9-20  (32)

No 1  
>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium}
Probab=38.97  E-value=19  Score=15.73  Aligned_cols=42  Identities=5%  Similarity=-0.054  Sum_probs=29.4

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEEC
Q ss_conf             7229831899848999999748885787546885788703740
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVV   65 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl   65 (141)
                      |-|+|-|+.++.||.+|.-..+ ......|=|.++|++...+-
T Consensus         1 aTiti~N~C~~tVWpg~~~~~g-~~~~~~gg~~l~~g~s~~~~   42 (222)
T 2ahn_A            1 ATISFKNNCPYMVWPGTLTSDQ-KPQLSTTGFELASQASFQLD   42 (222)
T ss_dssp             CEEEEEECSSSCBEEEEEEGGG-CCCCSCSBCCBCTTCEEEEE
T ss_pred             CEEEEEECCCCCCCEEECCCCC-CCCCCCCCEEECCCCEEEEE
T ss_conf             9699997999974337678899-87668988860899658874


No 2  
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* 2pe7_A* 1thv_A* ...
Probab=31.32  E-value=25  Score=15.00  Aligned_cols=101  Identities=13%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC-CCCCCCEEEEEEEECCCCCCCCCCE-EEEECCCCE
Q ss_conf             72298318998489999997488857875468857887037405-6766747999999538871205750-136507532
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK-GALHSRYYYLYAEGVSHSEHWAGNV-QMCVGQDEF  100 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~-g~l~~r~yY~yAe~~~~~~~w~G~~-~~Cv~~~~F  100 (141)
                      |-|+|-|+-++.||.++.  .+... ...|=+.++||+..++.. ...++..+-  |+.   +-..+++- .-|..-+= 
T Consensus         1 ATfti~N~C~~tVWp~~~--~~~~~-~~~gG~~L~~g~s~~~~v~~~~wsGriW--gRT---gCs~d~~g~~~C~TGdC-   71 (206)
T 2vhk_A            1 ATFEIVNRCSYTVWAAAS--KGDAA-LDAGGRQLNSGESWTINVEPGTNGGKIW--ART---DCYFDDSGSGICKTGDC-   71 (206)
T ss_dssp             CEEEEEECSSSCEEEEEE--CSSSE-EEEEEEEECTTCEEEEECCTTCCSEEEE--EEB---SCEECTTSBEECSBSCC-
T ss_pred             CEEEEEECCCCCEEEECC--CCCCC-CCCCCEEECCCCEEEEECCCCCCCCEEE--CCC---CCCCCCCCCCEECCCCC-
T ss_conf             969999799998856606--89988-7897766089974898738987412054--358---98788999620545789-


Q ss_pred             EEECCCCHHHCCCCCCCCEEEEE--CCCCEEEEEEE
Q ss_conf             55253101227840028288760--79751789970
Q gi|254780443|r  101 NIVDIKNCYTRGYLRVGFTEYDT--GQHENWTVQLT  134 (141)
Q Consensus       101 ~i~g~~dC~~RG~~~~~F~evDt--g~~~~wTv~Lt  134 (141)
                        .|.-+|...|--.+-..|+..  ++++.|-|.|.
T Consensus        72 --gg~l~C~~~G~pPaTlaEftl~~~~~d~YdvSlv  105 (206)
T 2vhk_A           72 --GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNI  105 (206)
T ss_dssp             --TTBSSCSSCCCSSCCEEEEEEEETTEEEEEEECT
T ss_pred             --CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             --9836258889897302788714788765423000


No 3  
>3g7m_A Xylanase inhibitor TL-XI; beta-sheets, xylan degradation, hydrolase inhibitor; HET: GOL; 2.91A {Triticum aestivum}
Probab=31.11  E-value=25  Score=14.97  Aligned_cols=46  Identities=13%  Similarity=0.026  Sum_probs=30.9

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCC
Q ss_conf             72298318998489999997488857875468857887037405676674
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSR   72 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g~l~~r   72 (141)
                      |-|+|-|+.++.||.++.-..+    ...|=+.++||+...+.-...++.
T Consensus         1 a~~ti~N~C~~tVWpg~~~~~~----~~~gG~~L~pg~s~~~~~p~~wsG   46 (151)
T 3g7m_A            1 APLTITNRCHFTVWPAVALVLA----QGGGGTELHPGASWSLDTPVIGSQ   46 (151)
T ss_dssp             CCEEEEECSSSCEEEEEEETTS----SCCEECCBCTTCEEEECCCSSEEE
T ss_pred             CCEEEEECCCCCEEEECCCCCC----CCCCCEECCCCCEEEEECCCCCCE
T ss_conf             9289996999976243156788----899874259998799968988706


No 4  
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Probab=24.10  E-value=13  Score=16.70  Aligned_cols=11  Identities=18%  Similarity=0.196  Sum_probs=4.5

Q ss_pred             EEEEEEEECCC
Q ss_conf             87546885788
Q gi|254780443|r   49 MTEGWWQIPGN   59 (141)
Q Consensus        49 ~seGWw~i~pg   59 (141)
                      .+.|-+.|.|.
T Consensus        58 ~~SGvY~I~p~   68 (269)
T 1jc9_A           58 RSSGGYRIWPK   68 (269)
T ss_dssp             CSCEEEEECCT
T ss_pred             CCCCEEEEECC
T ss_conf             88705999638


No 5  
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1
Probab=17.91  E-value=28  Score=14.74  Aligned_cols=11  Identities=27%  Similarity=0.613  Sum_probs=7.8

Q ss_pred             CCEEEECCCCC
Q ss_conf             72298318998
Q gi|254780443|r   23 AGFRVCNGTKN   33 (141)
Q Consensus        23 A~~~vCN~T~~   33 (141)
                      |+|+-|.+...
T Consensus        26 agLtpC~es~a   36 (164)
T 1jb0_F           26 AGLVPCKDSPA   36 (164)
T ss_dssp             GGCEEGGGCHH
T ss_pred             CCCCCCCCCHH
T ss_conf             16860646999


No 6  
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1
Probab=17.78  E-value=47  Score=13.43  Aligned_cols=36  Identities=28%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC
Q ss_conf             72298318998489999997488857875468857887037405
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK   66 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~   66 (141)
                      |-|+|-|+-++.||.++. . ..++      ++++||+...+..
T Consensus         1 A~fti~N~C~~tVWp~~~-p-~~gg------~~l~~G~s~~~~v   36 (206)
T 1du5_A            1 AVFTVVNQCPFTVWAASV-P-VGGG------RQLNRGESWRITA   36 (206)
T ss_dssp             CEEEEEECSSSCEEEEEE-T-TTEE------EEECTTCEEEEEC
T ss_pred             CEEEEEECCCCCCCCCCC-C-CCCC------EECCCCCEEEEEC
T ss_conf             979999699998522300-5-7988------7218998589966


No 7  
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=14.78  E-value=34  Score=14.21  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             89999999999743683547
Q gi|254780443|r    4 SFLICFCFGAMIFCSNVSFA   23 (141)
Q Consensus         4 ~~l~~~~~~~~~~~~~~A~A   23 (141)
                      -+|...+.++++++..||-|
T Consensus         3 yllptaaagllllaaqpama   22 (26)
T 1tzs_X            3 YLLPTAAAGLLLLAAQPAMA   22 (26)
T ss_pred             CCCHHHHHHHHHHHCCHHHH
T ss_conf             21300787889994583776


No 8  
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus}
Probab=13.10  E-value=49  Score=13.31  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHCC------CCCCCCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCCEEE
Q ss_conf             57899999999997436------835472298318998489999997488857875468857887037405676674799
Q gi|254780443|r    2 LRSFLICFCFGAMIFCS------NVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYY   75 (141)
Q Consensus         2 l~~~l~~~~~~~~~~~~------~~A~A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g~l~~r~yY   75 (141)
                      |+.|.+++++.++++.+      +-+.-+-.+||.-...  |..-|-|....   .+ -.|+|.  .......+.-+..|
T Consensus         1 m~~~~~a~l~~~l~~~~~~~~~~~~~wp~~~~C~~~~~e--v~y~~CD~~~~---~~-i~i~PC--~~~~g~n~~I~~~f   72 (162)
T 3m7o_A            1 MNGVAAALLVWILTSPSSSDHGSENGWPKHTACNSGGLE--VVYQSCDPLQD---FG-LSIDQC--SKQIQSNLNIRFGI   72 (162)
T ss_dssp             -------------------------CCCCEEEEEETTEE--EEEEECCTTCC---CE-EEESSC--CSEECSSCEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEECCCCCE--EEEEECCCCCC---CE-ECCCCC--CCCCCCCEEEEEEE
T ss_conf             941558999999853011035434768732167278967--99875798787---41-145898--65579818999999


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780443|r   76 LYAE   79 (141)
Q Consensus        76 ~yAe   79 (141)
                      .-.+
T Consensus        73 ~~~~   76 (162)
T 3m7o_A           73 ILRQ   76 (162)
T ss_dssp             ECSS
T ss_pred             EECC
T ss_conf             9852


No 9  
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=12.13  E-value=53  Score=13.11  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCC-CCEEEECCC
Q ss_conf             9578999999999974368354-722983189
Q gi|254780443|r    1 MLRSFLICFCFGAMIFCSNVSF-AGFRVCNGT   31 (141)
Q Consensus         1 ~l~~~l~~~~~~~~~~~~~~A~-A~~~vCN~T   31 (141)
                      |.+.+|.. .++++++.+..|+ +.+++=-+.
T Consensus         1 Mkk~~~~l-~~~~l~~~~~~a~a~~~~id~~~   31 (191)
T 1y0g_A            1 MKKSLLGL-TFASLMFSAGSAVAADYKIDKEG   31 (191)
T ss_dssp             -----------------------CEEEECTTT
T ss_pred             CCHHHHHH-HHHHHHHHHCCCCCCCEEECCCC
T ss_conf             93369999-99999976022036537976888


No 10 
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2
Probab=11.02  E-value=45  Score=13.52  Aligned_cols=12  Identities=42%  Similarity=0.673  Sum_probs=9.1

Q ss_pred             CCCHHHCCCCCC
Q ss_conf             310122784002
Q gi|254780443|r  105 IKNCYTRGYLRV  116 (141)
Q Consensus       105 ~~dC~~RG~~~~  116 (141)
                      +.||..|||+..
T Consensus         9 dkdckrrgyrsg   20 (32)
T 1pjv_A            9 DKDCKRRGYRSG   20 (32)
T ss_dssp             HHHHHTTTSSEE
T ss_pred             CCHHHHCCCCCC
T ss_conf             506666175456


Done!