Query gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 100 out of 102 Neff 5.4 Searched_HMMs 13730 Date Wed Jun 1 04:05:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780443.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rqwa_ b.25.1.1 (A:) Thaumati 17.0 28 0.002 13.3 12.1 90 23-123 1-92 (207) 2 d1auna_ b.25.1.1 (A:) Pathogen 11.3 41 0.003 12.4 3.9 36 23-66 2-37 (208) 3 d1pjva_ g.3.7.2 (A:) Cobatoxin 11.0 26 0.0019 13.5 0.1 12 105-116 9-20 (32) 4 d1du5a_ b.25.1.1 (A:) Zeamatin 9.0 50 0.0036 11.9 5.6 43 23-73 1-44 (206) 5 d1qmya_ d.3.1.2 (A:) FMDV lead 8.2 27 0.002 13.4 -0.7 13 48-60 126-138 (156) 6 d1iyjb3 b.40.4.3 (B:2599-2731) 7.4 50 0.0036 11.9 0.4 12 47-58 51-62 (133) 7 d2do1a1 a.140.2.1 (A:5-46) Nuc 6.9 48 0.0035 12.0 0.0 12 106-117 13-24 (42) 8 d2outa2 d.344.1.1 (A:4-70) Mu- 6.1 68 0.005 11.1 0.5 10 110-119 14-23 (67) 9 d1lmra_ g.3.6.3 (A:) ADO1 {Ass 5.3 69 0.0051 11.0 0.2 11 105-115 2-12 (35) 10 d1y6kr1 b.1.2.1 (R:2-100) Inte 5.0 81 0.0059 10.6 4.4 32 65-96 65-99 (99) No 1 >d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]} Probab=17.03 E-value=28 Score=13.32 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=47.7 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC-CCCCCCEEEEEEEE-CCCCCCCCCCEEEEECCCCE Q ss_conf 72298318998489999997488857875468857887037405-67667479999995-38871205750136507532 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK-GALHSRYYYLYAEG-VSHSEHWAGNVQMCVGQDEF 100 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~-g~l~~r~yY~yAe~-~~~~~~w~G~~~~Cv~~~~F 100 (141) |-|+|-|+-++.||.++. .+... ...|=|+++||+-..+.- ...++..+--+.-= .++. ....|..-+= T Consensus 1 aTfti~N~C~~tVWp~~~--~g~~~-~~~gGf~L~pg~s~~i~~~~~~wsGRiW~RTgC~~d~~-----g~~~C~TGdC- 71 (207) T d1rqwa_ 1 ATFEIVNRCSYTVWAAAS--KGDAA-LDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS-----GSGICKTGDC- 71 (207) T ss_dssp CEEEEEECSSSCEEEEEE--CSSSE-EEEEEEEECTTCEEEEECCTTCCSEEEEEEEEEEECTT-----SBEEEEESCC- T ss_pred CEEEEEECCCCCEEEECC--CCCCC-CCCCCEECCCCCCEEEECCCCCCCCCEECCCCCCCCCC-----CCCEEECCCC- T ss_conf 969999599999734216--88987-68987661899836887589876340431378764899-----8610331666- Q ss_pred EEECCCCHHHCCCCCCCCEEEEE Q ss_conf 55253101227840028288760 Q gi|254780443|r 101 NIVDIKNCYTRGYLRVGFTEYDT 123 (141) Q Consensus 101 ~i~g~~dC~~RG~~~~~F~evDt 123 (141) .|.-+|..-|--.+-..|+.. T Consensus 72 --gg~l~C~~~g~pP~TLaEftl 92 (207) T d1rqwa_ 72 --GGLLRCKRFGRPPTTLAEFSL 92 (207) T ss_dssp --TTBSSCSSCCCSSCCEEEEEE T ss_pred --CCEEECCCCCCCCCCCEEEEC T ss_conf --766546889989844413751 No 2 >d1auna_ b.25.1.1 (A:) Pathogenesis-related protein 5d {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Probab=11.34 E-value=41 Score=12.37 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=26.3 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC Q ss_conf 72298318998489999997488857875468857887037405 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK 66 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~ 66 (141) |-|+|-|+-++.||.||. . ..+ =++++||+-..+.. T Consensus 2 ~~fti~N~C~~TVWp~~~-p-~~g------g~~L~~g~s~~~~~ 37 (208) T d1auna_ 2 GVFEVHNNCPYTVWAAAT-P-VGG------GRRLERGQSWWFWA 37 (208) T ss_dssp CEEEEEECSSSCEEEEEE-T-TTE------EEEECTTCEEEEEC T ss_pred CEEEEEECCCCCCCCCCC-C-CCC------CCCCCCCCCEEEEC T ss_conf 779999699998124434-6-898------75148998348878 No 3 >d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]} Probab=11.02 E-value=26 Score=13.52 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=9.1 Q ss_pred CCCHHHCCCCCC Q ss_conf 310122784002 Q gi|254780443|r 105 IKNCYTRGYLRV 116 (141) Q Consensus 105 ~~dC~~RG~~~~ 116 (141) +.||..|||+.. T Consensus 9 dkdckrrgyrsg 20 (32) T d1pjva_ 9 DKDCKRRGYRSG 20 (32) T ss_dssp HHHHHTTTSSEE T ss_pred CCHHHHCCCCCC T ss_conf 506666175456 No 4 >d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]} Probab=8.98 E-value=50 Score=11.85 Aligned_cols=43 Identities=23% Similarity=0.185 Sum_probs=29.1 Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCC-CCCCCE Q ss_conf 722983189984899999974888578754688578870374056-766747 Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG-ALHSRY 73 (141) Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g-~l~~r~ 73 (141) |-|+|-|+-++.||.+|. . ..++ ++++||+...+... ..++.. T Consensus 1 A~fti~N~C~~tvWp~~~-p-~~gg------~~L~~G~s~~~~vp~~~w~GR 44 (206) T d1du5a_ 1 AVFTVVNQCPFTVWAASV-P-VGGG------RQLNRGESWRITAPAGTTAAR 44 (206) T ss_dssp CEEEEEECSSSCEEEEEE-T-TTEE------EEECTTCEEEEECCTTCCSEE T ss_pred CEEEEEECCCCCCCCCCC-C-CCCC------EECCCCCEEEEECCCCCCCCC T ss_conf 979999599998245524-6-8987------303899707986689974312 No 5 >d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Probab=8.19 E-value=27 Score=13.43 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=9.0 Q ss_pred EEEEEEEEECCCC Q ss_conf 7875468857887 Q gi|254780443|r 48 WMTEGWWQIPGNT 60 (141) Q Consensus 48 W~seGWw~i~pg~ 60 (141) -+|+||+.|+-.+ T Consensus 126 ~TS~GWyaiDDe~ 138 (156) T d1qmya_ 126 VTSNGWYAIDDED 138 (156) T ss_dssp CCTTSSEEEETTE T ss_pred ECCCCEEEECCCC T ss_conf 8248649836550 No 6 >d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=7.43 E-value=50 Score=11.87 Aligned_cols=12 Identities=25% Similarity=0.748 Sum_probs=10.4 Q ss_pred CEEEEEEEEECC Q ss_conf 578754688578 Q gi|254780443|r 47 GWMTEGWWQIPG 58 (141) Q Consensus 47 ~W~seGWw~i~p 58 (141) -+.|-|||.|.. T Consensus 51 lelTDGWYsi~a 62 (133) T d1iyjb3 51 IELTDGWYAVKA 62 (133) T ss_dssp EEEECSSCEEEE T ss_pred EEEECCCEEEEE T ss_conf 999548778889 No 7 >d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.88 E-value=48 Score=11.98 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=8.5 Q ss_pred CCHHHCCCCCCC Q ss_conf 101227840028 Q gi|254780443|r 106 KNCYTRGYLRVG 117 (141) Q Consensus 106 ~dC~~RG~~~~~ 117 (141) +.|.+||.+.-| T Consensus 13 qec~argl~~kg 24 (42) T d2do1a1 13 QECLARGLETKG 24 (42) T ss_dssp HHHHHHTCCCCS T ss_pred HHHHHCCCCCCC T ss_conf 999973641357 No 8 >d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]} Probab=6.08 E-value=68 Score=11.07 Aligned_cols=10 Identities=50% Similarity=1.085 Sum_probs=7.0 Q ss_pred HCCCCCCCCE Q ss_conf 2784002828 Q gi|254780443|r 110 TRGYLRVGFT 119 (141) Q Consensus 110 ~RG~~~~~F~ 119 (141) .-||+++||- T Consensus 14 KdGYRRAGfS 23 (67) T d2outa2 14 KEGYRRAGFS 23 (67) T ss_dssp CSCCCCSSSC T ss_pred CHHHHHCCEE T ss_conf 0224423705 No 9 >d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]} Probab=5.34 E-value=69 Score=11.02 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=6.7 Q ss_pred CCCHHHCCCCC Q ss_conf 31012278400 Q gi|254780443|r 105 IKNCYTRGYLR 115 (141) Q Consensus 105 ~~dC~~RG~~~ 115 (141) ++||..||-.- T Consensus 2 d~dclprgskc 12 (35) T d1lmra_ 2 DDDCLPRGSKC 12 (35) T ss_dssp CSCCCCTTCCC T ss_pred CCCCCCCCCCC T ss_conf 64334565510 No 10 >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.97 E-value=81 Score=10.61 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=15.6 Q ss_pred CCCCCCCCEEEEEEEECCCCC--CCCCCE-EEEEC Q ss_conf 056766747999999538871--205750-13650 Q gi|254780443|r 65 VKGALHSRYYYLYAEGVSHSE--HWAGNV-QMCVG 96 (141) Q Consensus 65 l~g~l~~r~yY~yAe~~~~~~--~w~G~~-~~Cv~ 96 (141) +.+.-....|+++..+..+.+ .|.-.. .||++ T Consensus 65 ~~~l~~~~~Y~fRVrA~n~~g~S~Ws~t~~~f~~~ 99 (99) T d1y6kr1 65 TLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVD 99 (99) T ss_dssp GTTGGGSSCEEEEEEEEETTEECCCEECSSCBCGG T ss_pred EEECCCCCEEEEEEEEECCCCCCCCCCCCCCEECC T ss_conf 42047898899999998499717884357626359 Done!