Query         gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs    100 out of 102
Neff          5.4 
Searched_HMMs 13730
Date          Wed Jun  1 04:05:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780443.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rqwa_ b.25.1.1 (A:) Thaumati  17.0      28   0.002   13.3  12.1   90   23-123     1-92  (207)
  2 d1auna_ b.25.1.1 (A:) Pathogen  11.3      41   0.003   12.4   3.9   36   23-66      2-37  (208)
  3 d1pjva_ g.3.7.2 (A:) Cobatoxin  11.0      26  0.0019   13.5   0.1   12  105-116     9-20  (32)
  4 d1du5a_ b.25.1.1 (A:) Zeamatin   9.0      50  0.0036   11.9   5.6   43   23-73      1-44  (206)
  5 d1qmya_ d.3.1.2 (A:) FMDV lead   8.2      27   0.002   13.4  -0.7   13   48-60    126-138 (156)
  6 d1iyjb3 b.40.4.3 (B:2599-2731)   7.4      50  0.0036   11.9   0.4   12   47-58     51-62  (133)
  7 d2do1a1 a.140.2.1 (A:5-46) Nuc   6.9      48  0.0035   12.0   0.0   12  106-117    13-24  (42)
  8 d2outa2 d.344.1.1 (A:4-70) Mu-   6.1      68   0.005   11.1   0.5   10  110-119    14-23  (67)
  9 d1lmra_ g.3.6.3 (A:) ADO1 {Ass   5.3      69  0.0051   11.0   0.2   11  105-115     2-12  (35)
 10 d1y6kr1 b.1.2.1 (R:2-100) Inte   5.0      81  0.0059   10.6   4.4   32   65-96     65-99  (99)

No 1  
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]}
Probab=17.03  E-value=28  Score=13.32  Aligned_cols=90  Identities=14%  Similarity=0.163  Sum_probs=47.7

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC-CCCCCCEEEEEEEE-CCCCCCCCCCEEEEECCCCE
Q ss_conf             72298318998489999997488857875468857887037405-67667479999995-38871205750136507532
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK-GALHSRYYYLYAEG-VSHSEHWAGNVQMCVGQDEF  100 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~-g~l~~r~yY~yAe~-~~~~~~w~G~~~~Cv~~~~F  100 (141)
                      |-|+|-|+-++.||.++.  .+... ...|=|+++||+-..+.- ...++..+--+.-= .++.     ....|..-+= 
T Consensus         1 aTfti~N~C~~tVWp~~~--~g~~~-~~~gGf~L~pg~s~~i~~~~~~wsGRiW~RTgC~~d~~-----g~~~C~TGdC-   71 (207)
T d1rqwa_           1 ATFEIVNRCSYTVWAAAS--KGDAA-LDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS-----GSGICKTGDC-   71 (207)
T ss_dssp             CEEEEEECSSSCEEEEEE--CSSSE-EEEEEEEECTTCEEEEECCTTCCSEEEEEEEEEEECTT-----SBEEEEESCC-
T ss_pred             CEEEEEECCCCCEEEECC--CCCCC-CCCCCEECCCCCCEEEECCCCCCCCCEECCCCCCCCCC-----CCCEEECCCC-
T ss_conf             969999599999734216--88987-68987661899836887589876340431378764899-----8610331666-


Q ss_pred             EEECCCCHHHCCCCCCCCEEEEE
Q ss_conf             55253101227840028288760
Q gi|254780443|r  101 NIVDIKNCYTRGYLRVGFTEYDT  123 (141)
Q Consensus       101 ~i~g~~dC~~RG~~~~~F~evDt  123 (141)
                        .|.-+|..-|--.+-..|+..
T Consensus        72 --gg~l~C~~~g~pP~TLaEftl   92 (207)
T d1rqwa_          72 --GGLLRCKRFGRPPTTLAEFSL   92 (207)
T ss_dssp             --TTBSSCSSCCCSSCCEEEEEE
T ss_pred             --CCEEECCCCCCCCCCCEEEEC
T ss_conf             --766546889989844413751


No 2  
>d1auna_ b.25.1.1 (A:) Pathogenesis-related protein 5d {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=11.34  E-value=41  Score=12.37  Aligned_cols=36  Identities=19%  Similarity=0.106  Sum_probs=26.3

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC
Q ss_conf             72298318998489999997488857875468857887037405
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK   66 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~   66 (141)
                      |-|+|-|+-++.||.||. . ..+      =++++||+-..+..
T Consensus         2 ~~fti~N~C~~TVWp~~~-p-~~g------g~~L~~g~s~~~~~   37 (208)
T d1auna_           2 GVFEVHNNCPYTVWAAAT-P-VGG------GRRLERGQSWWFWA   37 (208)
T ss_dssp             CEEEEEECSSSCEEEEEE-T-TTE------EEEECTTCEEEEEC
T ss_pred             CEEEEEECCCCCCCCCCC-C-CCC------CCCCCCCCCEEEEC
T ss_conf             779999699998124434-6-898------75148998348878


No 3  
>d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=11.02  E-value=26  Score=13.52  Aligned_cols=12  Identities=42%  Similarity=0.673  Sum_probs=9.1

Q ss_pred             CCCHHHCCCCCC
Q ss_conf             310122784002
Q gi|254780443|r  105 IKNCYTRGYLRV  116 (141)
Q Consensus       105 ~~dC~~RG~~~~  116 (141)
                      +.||..|||+..
T Consensus         9 dkdckrrgyrsg   20 (32)
T d1pjva_           9 DKDCKRRGYRSG   20 (32)
T ss_dssp             HHHHHTTTSSEE
T ss_pred             CCHHHHCCCCCC
T ss_conf             506666175456


No 4  
>d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]}
Probab=8.98  E-value=50  Score=11.85  Aligned_cols=43  Identities=23%  Similarity=0.185  Sum_probs=29.1

Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCC-CCCCCE
Q ss_conf             722983189984899999974888578754688578870374056-766747
Q gi|254780443|r   23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG-ALHSRY   73 (141)
Q Consensus        23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g-~l~~r~   73 (141)
                      |-|+|-|+-++.||.+|. . ..++      ++++||+...+... ..++..
T Consensus         1 A~fti~N~C~~tvWp~~~-p-~~gg------~~L~~G~s~~~~vp~~~w~GR   44 (206)
T d1du5a_           1 AVFTVVNQCPFTVWAASV-P-VGGG------RQLNRGESWRITAPAGTTAAR   44 (206)
T ss_dssp             CEEEEEECSSSCEEEEEE-T-TTEE------EEECTTCEEEEECCTTCCSEE
T ss_pred             CEEEEEECCCCCCCCCCC-C-CCCC------EECCCCCEEEEECCCCCCCCC
T ss_conf             979999599998245524-6-8987------303899707986689974312


No 5  
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=8.19  E-value=27  Score=13.43  Aligned_cols=13  Identities=23%  Similarity=0.723  Sum_probs=9.0

Q ss_pred             EEEEEEEEECCCC
Q ss_conf             7875468857887
Q gi|254780443|r   48 WMTEGWWQIPGNT   60 (141)
Q Consensus        48 W~seGWw~i~pg~   60 (141)
                      -+|+||+.|+-.+
T Consensus       126 ~TS~GWyaiDDe~  138 (156)
T d1qmya_         126 VTSNGWYAIDDED  138 (156)
T ss_dssp             CCTTSSEEEETTE
T ss_pred             ECCCCEEEECCCC
T ss_conf             8248649836550


No 6  
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.43  E-value=50  Score=11.87  Aligned_cols=12  Identities=25%  Similarity=0.748  Sum_probs=10.4

Q ss_pred             CEEEEEEEEECC
Q ss_conf             578754688578
Q gi|254780443|r   47 GWMTEGWWQIPG   58 (141)
Q Consensus        47 ~W~seGWw~i~p   58 (141)
                      -+.|-|||.|..
T Consensus        51 lelTDGWYsi~a   62 (133)
T d1iyjb3          51 IELTDGWYAVKA   62 (133)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEECCCEEEEE
T ss_conf             999548778889


No 7  
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.88  E-value=48  Score=11.98  Aligned_cols=12  Identities=33%  Similarity=0.769  Sum_probs=8.5

Q ss_pred             CCHHHCCCCCCC
Q ss_conf             101227840028
Q gi|254780443|r  106 KNCYTRGYLRVG  117 (141)
Q Consensus       106 ~dC~~RG~~~~~  117 (141)
                      +.|.+||.+.-|
T Consensus        13 qec~argl~~kg   24 (42)
T d2do1a1          13 QECLARGLETKG   24 (42)
T ss_dssp             HHHHHHTCCCCS
T ss_pred             HHHHHCCCCCCC
T ss_conf             999973641357


No 8  
>d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]}
Probab=6.08  E-value=68  Score=11.07  Aligned_cols=10  Identities=50%  Similarity=1.085  Sum_probs=7.0

Q ss_pred             HCCCCCCCCE
Q ss_conf             2784002828
Q gi|254780443|r  110 TRGYLRVGFT  119 (141)
Q Consensus       110 ~RG~~~~~F~  119 (141)
                      .-||+++||-
T Consensus        14 KdGYRRAGfS   23 (67)
T d2outa2          14 KEGYRRAGFS   23 (67)
T ss_dssp             CSCCCCSSSC
T ss_pred             CHHHHHCCEE
T ss_conf             0224423705


No 9  
>d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}
Probab=5.34  E-value=69  Score=11.02  Aligned_cols=11  Identities=27%  Similarity=0.474  Sum_probs=6.7

Q ss_pred             CCCHHHCCCCC
Q ss_conf             31012278400
Q gi|254780443|r  105 IKNCYTRGYLR  115 (141)
Q Consensus       105 ~~dC~~RG~~~  115 (141)
                      ++||..||-.-
T Consensus         2 d~dclprgskc   12 (35)
T d1lmra_           2 DDDCLPRGSKC   12 (35)
T ss_dssp             CSCCCCTTCCC
T ss_pred             CCCCCCCCCCC
T ss_conf             64334565510


No 10 
>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97  E-value=81  Score=10.61  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=15.6

Q ss_pred             CCCCCCCCEEEEEEEECCCCC--CCCCCE-EEEEC
Q ss_conf             056766747999999538871--205750-13650
Q gi|254780443|r   65 VKGALHSRYYYLYAEGVSHSE--HWAGNV-QMCVG   96 (141)
Q Consensus        65 l~g~l~~r~yY~yAe~~~~~~--~w~G~~-~~Cv~   96 (141)
                      +.+.-....|+++..+..+.+  .|.-.. .||++
T Consensus        65 ~~~l~~~~~Y~fRVrA~n~~g~S~Ws~t~~~f~~~   99 (99)
T d1y6kr1          65 TLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVD   99 (99)
T ss_dssp             GTTGGGSSCEEEEEEEEETTEECCCEECSSCBCGG
T ss_pred             EEECCCCCEEEEEEEEECCCCCCCCCCCCCCEECC
T ss_conf             42047898899999998499717884357626359


Done!