RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>gnl|CDD|35039 COG5480, COG5480, Predicted integral membrane protein [Function
           unknown].
          Length = 147

 Score =  139 bits (350), Expect = 3e-34
 Identities = 58/112 (51%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 23  AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVS 82
           A FRVCN T+ L+GVA+GY A K GW+TEGWW +  + C T+++G L SRYYYLYAE   
Sbjct: 33  ADFRVCNYTQTLVGVAIGYRA-KNGWVTEGWWVVEASECVTLIEGELTSRYYYLYAEDAK 91

Query: 83  HSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTEYDTGQHENWTVQLT 134
               WAG++ MCV +D F I  +++C+ RG+   GF EYDTG+  +W VQL+
Sbjct: 92  GGARWAGSINMCVAEDRFKIFGVQDCFARGFQAAGFNEYDTGEQASWMVQLS 143


>gnl|CDD|30666 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
           II [Lipid metabolism / Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 534

 Score = 27.8 bits (61), Expect = 1.1
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 27  VCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG 67
           V      ++   VG   V+G  + +G+W  P  T E   + 
Sbjct: 360 VDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDED 400


>gnl|CDD|38201 KOG2990, KOG2990, KOG2990, C2C2-type Zn-finger protein [Function
          unknown].
          Length = 317

 Score = 26.5 bits (58), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 28 CNGTKNLIGVAVGYPAVK 45
          C+G KN IG+ V Y A K
Sbjct: 55 CDGCKNHIGMGVRYNAEK 72


>gnl|CDD|29267 cd00212, PTS_IIB_glc, PTS_IIB, PTS system, glucose/sucrose specific
           IIB subunit. The bacterial phosphoenolpyruvate: sugar
           phosphotransferase system (PTS) is a multi-protein
           system involved in the regulation of a variety of
           metabolic and transcriptional processes. This family is
           one of four structurally and functionally distinct group
           IIB PTS system cytoplasmic enzymes, necessary for the
           uptake of carbohydrates across the cytoplasmic membrane
           and their phosphorylation.
          Length = 78

 Score = 25.1 bits (55), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 4/26 (15%)

Query: 91  VQMCVGQDEFNIVDIKNCYTRGYLRV 116
           ++   G++  NIV + +C TR  LR+
Sbjct: 8   LEALGGKE--NIVSLDHCATR--LRL 29


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.139    0.478 

Gapped
Lambda     K      H
   0.267   0.0893    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,799,900
Number of extensions: 87039
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 5
Length of query: 141
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,448,581
Effective search space: 253569117
Effective search space used: 253569117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.5 bits)