RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.8 bits (66), Expect = 0.22
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 34   LIGV----AVGYP-AVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVSHSEHWA 88
            +IGV      G+P    G WM  G  QI            L+S        G+      A
Sbjct: 1373 VIGVFQKFLTGHPKGAAGAWMMNGALQI------------LNS--------GIIPGNRNA 1412

Query: 89   GNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTEYDTGQ 125
             NV   + Q E+ +   K   T G   V  T +  GQ
Sbjct: 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQ 1449



 Score = 24.8 bits (53), Expect = 8.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 83  HSEHWAGNVQMC 94
           HSE WA  + +C
Sbjct: 655 HSESWANQLTVC 666


>1ev1_1 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral
           virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP:
           b.121.4.1
          Length = 281

 Score = 29.8 bits (67), Expect = 0.27
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 104 DIKNCYTRGYLRVGFTEYDTGQHE------NWTVQLTEPAQDRR 141
            I+N   R    V + EY TG  E      NW +     AQ RR
Sbjct: 63  TIENFLARSAC-VFYLEYKTGTKEDSNSFNNWVITTRRVAQLRR 105


>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus
           VG-5-27, picornavirus, icosahedral virus; HET: MYR;
           3.00A {Bovine enterovirus} SCOP: b.121.4.1
          Length = 281

 Score = 29.0 bits (65), Expect = 0.39
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 104 DIKNCYTRGYLRVGFTEYDTGQ-HENWTVQLTEPAQDRR 141
            +++ + R  L VG     TG    +W +   E  Q R 
Sbjct: 70  SVESFFGRSSL-VGMPLLATGTSITHWRIDFREFVQLRA 107


>2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A
           {Leptospira interrogans} PDB: 3frl_A*
          Length = 241

 Score = 28.9 bits (64), Expect = 0.40
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 98  DEFNIVDIKNCYTRGYLRVGFTEYDTGQHE 127
           D+   +D K    RG  R+ FT Y  G+ +
Sbjct: 174 DDLKNIDTKKLLVRGLYRISFTTYKPGEVK 203


>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
           thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
           coli} SCOP: c.68.1.6
          Length = 296

 Score = 27.8 bits (62), Expect = 1.0
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 6/37 (16%)

Query: 99  EFNIVDIKNCYT-RGYLRV-----GFTEYDTGQHENW 129
           E  I  I   Y   G L V     GF   DTG H++ 
Sbjct: 197 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSL 233


>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral
           protein, icosahedral virus; HET: MYR G; 3.20A {Human
           coxsackievirus A21} PDB: 1z7z_1*
          Length = 298

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 9/46 (19%)

Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN--------WTVQLTEPAQDRR 141
            +++ + R    V                    W +  T+  Q RR
Sbjct: 71  CLESFFGRAAC-VTILSLTNSSKSGEEKKHFNIWNITYTDTVQLRR 115


>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan
          degradation, hydrolase; HET: CE6; 1.90A {Clostridium
          thermocellum}
          Length = 540

 Score = 26.3 bits (57), Expect = 2.6
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 50 TEGWWQIPGNTCETVVKGALHSRYYYLYAEGVSHSEHWAGNVQ 92
           +GW  +  +T  T V+   ++    +     S +    G   
Sbjct: 34 FDGWCNLGVDTYLTAVENEGNNGTRGMMVINRSSA--SDGAYS 74


>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
           mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
           {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1*
           1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1*
           1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 1r1a_1* 2hwd_1* 2hwe_1*
           2hwf_1*
          Length = 285

 Score = 26.3 bits (58), Expect = 2.6
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 7/44 (15%)

Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN------WTVQLTEPAQDRR 141
            +++   R    +  +  D   + N      W + L E AQ RR
Sbjct: 66  SVESFLGRSGC-IHESVLDIVDNYNDQSFTKWNINLQEMAQIRR 108


>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural
           genomics, structural genomics consortium, SGC,
           glycoprotein lyase, metal-binding; 1.90A {Homo sapiens}
          Length = 278

 Score = 25.6 bits (55), Expect = 4.0
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 77  YAEGVSHSEHWAGNVQMCVG--QDEFNIVDIKNCYTRGYLRVGFTEYDT 123
           Y+EG     HW  +   C G  Q   N+   K  Y      +  T Y+T
Sbjct: 6   YSEGALDEAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGYET 54


>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
           initiative, PSI-II, NYSGXRC, 11193J, structural
           genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
          Length = 549

 Score = 24.9 bits (53), Expect = 6.2
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 39  VGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYY 74
            G   ++G  + +G+W+      E         +++
Sbjct: 383 SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418


>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
           PDB: 1ult_A* 1v26_A*
          Length = 541

 Score = 24.8 bits (53), Expect = 7.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 36  GVAVGYPAVKGGWMTEGWWQIPGNTCETVVK 66
           G A+G   +KG W+T G++     T   +  
Sbjct: 380 GKALGEVQLKGPWITGGYYGNEEATRSALTP 410


>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
           EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
          Length = 536

 Score = 24.5 bits (53), Expect = 8.3
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 39  VGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYY 75
            G   ++G  + +G+   P  T  T+ K      + +
Sbjct: 382 PGEICIRGDQIMKGYLNDPEATSRTIDKE----GWLH 414


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.139    0.478 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,311,677
Number of extensions: 55058
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 22
Length of query: 141
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 58
Effective length of database: 3,680,978
Effective search space: 213496724
Effective search space used: 213496724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)