RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
(141 letters)
>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 281
Score = 31.3 bits (71), Expect = 0.030
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN------WTVQLTEPAQDRR 141
I+N R V + EY TG E+ W + AQ RR
Sbjct: 63 TIENFLARSAC-VFYLEYKTGTKEDSNSFNNWVITTRRVAQLRR 105
>d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 268
Score = 28.6 bits (64), Expect = 0.20
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 104 DIKNCYTRGYLRVGFTEYDTG-QHENWTVQLTEPAQDRR 141
+++ + R L VG TG +W + E Q R
Sbjct: 57 SVESFFGRSSL-VGMPLLATGTSITHWRIDFREFVQLRA 94
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 279
Score = 28.6 bits (64), Expect = 0.20
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 104 DIKNCYTRGYLRVGFTEYDTGQ--------HENWTVQLTEPAQDRR 141
I++ + RG V E D Q W + + Q RR
Sbjct: 53 TIESFFARGAC-VAIIEVDNEQPTTRAQKLFAMWRITYKDTVQLRR 97
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins
{Swine vesicular disease virus [TaxId: 12075]}
Length = 271
Score = 28.2 bits (63), Expect = 0.30
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 104 DIKNCYTRGYLRVGFTEYDTG-----QHENWTVQLTEPAQDRR 141
++N R V +T Y+ W + + AQ RR
Sbjct: 51 TVENFLCRSAC-VFYTTYENHDSDGDNFAYWVINTRQVAQLRR 92
>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
1A (HRV-1A) [TaxId: 12134]}
Length = 283
Score = 27.9 bits (62), Expect = 0.38
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 104 DIKNCYTRGYLRVGFTEYDTG---------QHENWTVQLTEPAQDRR 141
I++ R V + W + L E AQ RR
Sbjct: 62 SIESFLGRSGC-VHISRIKVDYTDYNGQDINFTKWKITLQEMAQIRR 107
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
2 (HRV-2) [TaxId: 12130]}
Length = 269
Score = 27.9 bits (62), Expect = 0.38
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 104 DIKNCYTRGYLRVGFTEYDTG-------QHENWTVQLTEPAQDRR 141
+++ R + ++ + W + L E AQ RR
Sbjct: 52 SLESFLGRSGC-IHESKLEVTLANYNKENFTVWAINLQEMAQIRR 95
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 27.4 bits (61), Expect = 0.46
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 99 EFNIVDIKNCYT-RGYLRV-----GFTEYDTGQHENW 129
E I I Y G L V GF DTG H++
Sbjct: 195 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSL 231
>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus
16, (HRV-16) [TaxId: 31708]}
Length = 285
Score = 27.1 bits (60), Expect = 0.64
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN------WTVQLTEPAQDRR 141
+++ R + + D + N W + L E AQ RR
Sbjct: 66 SVESFLGRSGC-IHESVLDIVDNYNDQSFTKWNINLQEMAQIRR 108
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 24.9 bits (53), Expect = 3.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 36 GVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG 67
G A+G +KG W+T G++ T +
Sbjct: 373 GKALGEVQLKGPWITGGYYGNEEATRSALTPD 404
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 273
Score = 24.0 bits (52), Expect = 4.9
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 13/50 (26%)
Query: 104 DIKNCYTRGYLRVGFTEYDTGQHE------------NWTVQLTEPAQDRR 141
D++ R V TE +W + L+ Q R+
Sbjct: 50 DVECFLGRAAC-VHVTEIQNKDATGIDNHREAKLFNDWKINLSSLVQLRK 98
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 24.0 bits (51), Expect = 5.1
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 12 GAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETV 64
G ++F + + F K + Y A+ GG TEG+ G E
Sbjct: 142 GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWY 194
>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5
xylanase {Erwinia chrysanthemi [TaxId: 556]}
Length = 106
Score = 23.4 bits (50), Expect = 8.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 103 VDIKNCYTRGYLRVGFTEYDTG 124
+D Y G LR+ TE
Sbjct: 5 IDANVNYQIGALRIQATENPQS 26
>d1f1sa4 b.30.5.2 (A:620-911) Hyaluronate lyase {Streptococcus
agalactiae [TaxId: 1311]}
Length = 292
Score = 23.4 bits (50), Expect = 8.7
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 24 GFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVSH 83
G+ +G + + W T +++ G T + + + +++
Sbjct: 47 GWYTGDGMFYIYNSDQSH-YSNHFWPTVNPYKMAGTTEKDAKREDTTKEFMSKHSKDAKE 105
Query: 84 SEHWAGNVQMCVG 96
VG
Sbjct: 106 KTGQVTGTSDFVG 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.478
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,466
Number of extensions: 25050
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 31
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)