BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 141

 Score =  298 bits (762), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MLRSFLICFCFGAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNT 60
           MLRSFLICFCFGAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNT
Sbjct: 1   MLRSFLICFCFGAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNT 60

Query: 61  CETVVKGALHSRYYYLYAEGVSHSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTE 120
           CETVVKGALHSRYYYLYAEGVSHSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTE
Sbjct: 61  CETVVKGALHSRYYYLYAEGVSHSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTE 120

Query: 121 YDTGQHENWTVQLTEPAQDRR 141
           YDTGQHENWTVQLTEPAQDRR
Sbjct: 121 YDTGQHENWTVQLTEPAQDRR 141


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 492

 Score = 20.8 bits (42), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 108 CYTRGYLRVGFTEYDTGQHENWTVQLTEPAQD 139
           CY    +     EY + ++ N+++++  PA D
Sbjct: 416 CYFEWKIPTKSPEYISSENINFSLEMAYPADD 447


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.139    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,476
Number of Sequences: 1233
Number of extensions: 3987
Number of successful extensions: 8
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 328,796
effective HSP length: 66
effective length of query: 75
effective length of database: 247,418
effective search space: 18556350
effective search space used: 18556350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 34 (17.7 bits)