HHsearch alignment for GI: 254780444 and conserved domain: COG2932
>COG2932 Predicted transcriptional regulator [Transcription].
Probab=99.96 E-value=3.8e-28 Score=202.35 Aligned_cols=209 Identities=34% Similarity=0.510 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 75589999999999996499988999982899879889975157887557798999998732187521000011112444
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~~~~~~ 82 (223)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (214)
T COG2932 1 MLSHDSGGRAIDALAERGKASSSGLARKEGLDPTSFNLSKRASADVSARWLSTGSGEKVLEAAGAPTDLTAGDAS----E 76 (214)
T ss_pred CCCHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC----C
T ss_conf 940230443567777540332234667635687851044430044401022341132355222453221344344----6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECC
Q ss_conf 54422122024310113452221112544464035643721135454200368559999628332421487868999368
Q gi|254780444|r 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 (223)
Q Consensus 83 ~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~P~i~~Gd~vlVd~~ 162 (223)
T Consensus 77 ~~-~~~~~~~~~~a~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~-~~i~V~GDSMeP~~~~Gd~ilVd~~ 148 (214)
T COG2932 77 NP-VVPLIPVSGAAGAGADGFFDENGFPVGFGWDEIERPPGIDPD------SGV-FALRVTGDSMEPTYEDGDTLLVDPG 148 (214)
T ss_pred CC-CCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC------CCE-EEEEEECCCCCCCCCCCCEEEEECC
T ss_conf 75-545345331035677753267761421144410056555776------663-8999967766630159999999789
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCC-CCEEECHHH-EEEEEEEEEEEC
Q ss_conf 9740588899997179689999999779879999685898-875854786-599977998529
Q gi|254780444|r 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCY-PVDTVEMSD-IEWIARILWASQ 223 (223)
Q Consensus 163 ~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y-~~~~i~~~~-i~iigrVvw~~~ 223 (223)
T Consensus 149 ~~~~~gd~v~v~~~g~~~~VK~l~~~~~~~~~l~S~N~~~~~~~~~~~~~~v~iIgrVv~~~~ 211 (214)
T COG2932 149 VNTRRGDRVYVETDGGELYVKKLQREPGGLLRLVSLNPDYYPDEIFSEDDDVEIIGRVVWVSR 211 (214)
T ss_pred CCEEECCEEEEEEECCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf 842519999999959948899999957987999968988887333574240799999988667