HHsearch alignment for GI: 254780444 and conserved domain: COG4800

>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription].

Probab=97.23  E-value=0.0013  Score=43.46  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             5899999999999964999889999828998798899751578875577989999987321
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT   65 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~   65 (223)
T Consensus        13 s~E~F~~~l~~~l~Elglt~~eFak~anIP~StLYKil~G------~dpr~~tl~~I~kti   67 (170)
T COG4800          13 SGEDFGSCLQKLLDELGLTPSEFAKRANIPLSTLYKILKG------SDPRYDTLTRIFKTI   67 (170)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHC------CCCCHHHHHHHHHHH
T ss_conf             4007999999999981999899988709989999999817------996577899999999