HHsearch alignment for GI: 254780444 and conserved domain: PHA00361

>PHA00361 cI Repressor.
Probab=99.89  E-value=1.7e-22  Score=165.69  Aligned_cols=148  Identities=21%  Similarity=0.260  Sum_probs=118.0

Q ss_pred             HHHHHCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             987321875210000111124-----445442212202431011345222111254446403564372113545420036
Q gi|254780444|r   60 KILAATNETICQLLDLPFSDG-----RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ  134 (223)
Q Consensus        60 kia~~~~v~~~~l~~~~~~~~-----~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  134 (223)
T Consensus         1 ~lA~~Lg~s~~~Ll~g~~~~~~~~~~~~~~~~~~~vPvis~VqAG~w~e~~~-~~~~~~~~~~~~~~~~---------~~   70 (165)
T PHA00361          1 KLAKALGTSVDDLLQEDLSIIANVKVSITPKPVGLVPVLSWVQAGMWSEIVE-TFQDGDAEEWVPCPVK---------AG   70 (165)
T ss_pred             CHHHHHCCCHHHHHCCCCCCCCCCCEEECCCCCCEECEECHHHCCCCHHHCC-CCCCCCCCEEEECCCC---------CC
T ss_conf             9568669899998557556787751033266365766648714599722044-4686776368835666---------68


Q ss_pred             CCEEEEEECCCCCCC----CCCCCCEEEEECCCCCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEEECCCCCCCEEECH
Q ss_conf             855999962833242----1487868999368974058889999717-96899999997798799996858988758547
Q gi|254780444|r  135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM  209 (223)
Q Consensus       135 ~~~~~l~V~GDSM~P----~i~~Gd~vlVd~~~~~~~g~~v~~~~~~-~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~  209 (223)
T Consensus        71 ~~~F~L~V~GdSM~~p~g~~~~~Gd~iiVdp~~~~~~G~~VvA~~~~~~eaT~K~l~~d-~~~~~L~plNp~yp~I~~~-  148 (165)
T PHA00361         71 ERTFWLEVEGDSMTAPTGLSFPEGDSILVDPEVEAEPGDLVIARLEGASEATFKKLIID-GGAKYLKPLNPQYPYIPIN-  148 (165)
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEEE-CCEEEEEECCCCCCCCCCC-
T ss_conf             98899999667678875687389999998278757889999999689983489999995-9909998589998958069-


Q ss_pred             HHEEEEEEEE
Q ss_conf             8659997799
Q gi|254780444|r  210 SDIEWIARIL  219 (223)
Q Consensus       210 ~~i~iigrVv  219 (223)
T Consensus       149 ~~~~IiGvVV  158 (165)
T PHA00361        149 GDCSIIGVVI  158 (165)
T ss_pred             CCCEEEEEEE
T ss_conf             9839999999