HHsearch alignment for GI: 254780444 and conserved domain: PHA00361
>PHA00361 cI Repressor.
Probab=99.89 E-value=1.7e-22 Score=165.69 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=118.0
Q ss_pred HHHHHCCCCCCCCCCCCCCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 987321875210000111124-----445442212202431011345222111254446403564372113545420036
Q gi|254780444|r 60 KILAATNETICQLLDLPFSDG-----RTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQ 134 (223)
Q Consensus 60 kia~~~~v~~~~l~~~~~~~~-----~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 134 (223)
T Consensus 1 ~lA~~Lg~s~~~Ll~g~~~~~~~~~~~~~~~~~~~vPvis~VqAG~w~e~~~-~~~~~~~~~~~~~~~~---------~~ 70 (165)
T PHA00361 1 KLAKALGTSVDDLLQEDLSIIANVKVSITPKPVGLVPVLSWVQAGMWSEIVE-TFQDGDAEEWVPCPVK---------AG 70 (165)
T ss_pred CHHHHHCCCHHHHHCCCCCCCCCCCEEECCCCCCEECEECHHHCCCCHHHCC-CCCCCCCCEEEECCCC---------CC
T ss_conf 9568669899998557556787751033266365766648714599722044-4686776368835666---------68
Q ss_pred CCEEEEEECCCCCCC----CCCCCCEEEEECCCCCCCCCEEEEEEEC-CCEEEEEEEEECCCEEEEEECCCCCCCEEECH
Q ss_conf 855999962833242----1487868999368974058889999717-96899999997798799996858988758547
Q gi|254780444|r 135 TQDTRHKTQDTSMLP----LYRKGDILILNSAIQVNCGDRLLIKPRT-GDIVAKVLISRRGRSIDLMSLNCCYPVDTVEM 209 (223)
Q Consensus 135 ~~~~~l~V~GDSM~P----~i~~Gd~vlVd~~~~~~~g~~v~~~~~~-~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~ 209 (223)
T Consensus 71 ~~~F~L~V~GdSM~~p~g~~~~~Gd~iiVdp~~~~~~G~~VvA~~~~~~eaT~K~l~~d-~~~~~L~plNp~yp~I~~~- 148 (165)
T PHA00361 71 ERTFWLEVEGDSMTAPTGLSFPEGDSILVDPEVEAEPGDLVIARLEGASEATFKKLIID-GGAKYLKPLNPQYPYIPIN- 148 (165)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEEE-CCEEEEEECCCCCCCCCCC-
T ss_conf 98899999667678875687389999998278757889999999689983489999995-9909998589998958069-
Q ss_pred HHEEEEEEEE
Q ss_conf 8659997799
Q gi|254780444|r 210 SDIEWIARIL 219 (223)
Q Consensus 210 ~~i~iigrVv 219 (223)
T Consensus 149 ~~~~IiGvVV 158 (165)
T PHA00361 149 GDCSIIGVVI 158 (165)
T ss_pred CCCEEEEEEE
T ss_conf 9839999999