HHsearch alignment for GI: 254780444 and conserved domain: PRK10276
>PRK10276 DNA polymerase V subunit UmuD; Provisional.
Probab=99.70 E-value=2.9e-16 Score=125.39 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=90.1
Q ss_pred CCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCEEEEEC
Q ss_conf 442212202431-0113452221112544464035643721135454200368559999628332-42148786899936
Q gi|254780444|r 84 EKKEKEIPLLYF-PPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSM-LPLYRKGDILILNS 161 (223)
Q Consensus 84 ~~~~~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM-~P~i~~Gd~vlVd~ 161 (223)
T Consensus 9 ~~e~v~iPl~~~~vaAGfPsp---A~---d~~e~~i~l~~~li------~~p~~tF~lrV~GdSMi~agI~dGDiliVdr 76 (139)
T PRK10276 9 LREIVTLPLFSDLVQCGFPSP---AA---DYVEQRIDLNELLI------QHPSATYFVKASGDSMIDAGISDGDLLIVDS 76 (139)
T ss_pred CCCEEECCCCCCEEECCCCCC---CH---HCCCCCCCCCHHHH------CCCCCEEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 576598686788061839898---13---24646206298881------6999879999726873448889989999940
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHH-HEEEEEEEEEE
Q ss_conf 8974058889999717968999999977987999968589887585478-65999779985
Q gi|254780444|r 162 AIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARILWA 221 (223)
Q Consensus 162 ~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~-~i~iigrVvw~ 221 (223)
T Consensus 77 ~~~~~~GdIVva~i-dge~tvKrl~~~--~~~~L~p~N~~y~pi~i~~~d~~~I~GvV~~v 134 (139)
T PRK10276 77 SITASHGDIVIAAV-DGEFTVKKLQLR--PTVQLIPMNSAYSPITIGSEDTLDVFGVVTHI 134 (139)
T ss_pred CCCCCCCCEEEEEE-CCEEEEEEEEEC--CCCEECCCCCCCCCEECCCCCCEEEEEEEEEE
T ss_conf 59877899999998-998899999988--98169049999997685999967999999999