HHsearch alignment for GI: 254780444 and conserved domain: TIGR02607
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family; InterPro: IPR013430 Proteins in this entry form a distinct group of helix-turn-helix proteins, which are strictly bacterial and nearly always shorter than 110 amino acids. They include the characterised member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is encoded by the upstream member of the gene pair.; GO: 0003677 DNA binding.
Probab=97.62 E-value=0.0001 Score=50.63 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=48.0
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r 14 DRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP 76 (223)
Q Consensus 14 ~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~ 76 (223)
T Consensus 13 eEfL~PLg~s~~~LA~~LgVsr~~~sriv~~~~-----~iT~dmALRL~~~lG~sp~~WLnlQ 70 (81)
T TIGR02607 13 EEFLEPLGLSVRALAKALGVSRSTLSRIVNGRR-----GITADMALRLAKALGTSPEFWLNLQ 70 (81)
T ss_pred HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCC-----CCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 775210470689999870999788888874489-----9888899999997389876899877