HHsearch alignment for GI: 254780444 and conserved domain: TIGR03070
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=98.70 E-value=4.8e-08 Score=72.18 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999999999999649998899998289987988997515788755779899999873218752
Q gi|254780444|r 7 KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETI 69 (223)
Q Consensus 7 ~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~ 69 (223)
T Consensus 1 ~~lG~~Ir~~Rk~~glTQ~~LA~~aGvs~~~Is~iE~G~~-----~~~l~~l~~i~~aLGi~l 58 (58)
T TIGR03070 1 KQIGALVRARRKALGLTQADLADLAGVGLRFIRDIEKGKP-----TVRLDKVLRVLEALGLEL 58 (58)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCC
T ss_conf 9588999999999499899999881998999999978999-----888999999999808989