HHsearch alignment for GI: 254780444 and conserved domain: cd06462

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr
Probab=99.58  E-value=1.1e-14  Score=115.22  Aligned_cols=81  Identities=17%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             EEEEECCCCCCCCCCCCCEEEEECCCC-CCCCCEEEEEEECCCEEEEEEEEECC-CEEEEEECCCCCCCEEECH-HHEEE
Q ss_conf             999962833242148786899936897-40588899997179689999999779-8799996858988758547-86599
Q gi|254780444|r  138 TRHKTQDTSMLPLYRKGDILILNSAIQ-VNCGDRLLIKPRTGDIVAKVLISRRG-RSIDLMSLNCCYPVDTVEM-SDIEW  214 (223)
Q Consensus       138 ~~l~V~GDSM~P~i~~Gd~vlVd~~~~-~~~g~~v~~~~~~~~~~iKrl~~~~~-~~~~l~s~Np~y~~~~i~~-~~i~i  214 (223)
T Consensus         1 ~~~~v~gdSM~P~i~~Gd~v~vd~~~~~~~~Gdiv~~~~~~~~~~iKrl~~~~~~~~~~l~~dN~~~~~~~~~~~~~~~~   80 (84)
T cd06462           1 FALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPGGELTVKRVIGLPGEGHYFLLGDNPNSPDSRIDGPPELDI   80 (84)
T ss_pred             CEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEE
T ss_conf             97996567771046489899997356657899699999789939999999888999899979899998812489997299


Q ss_pred             EEEE
Q ss_conf             9779
Q gi|254780444|r  215 IARI  218 (223)
Q Consensus       215 igrV  218 (223)
T Consensus        81 ~g~v   84 (84)
T cd06462          81 VGVV   84 (84)
T ss_pred             EEEC
T ss_conf             9989