HHsearch alignment for GI: 254780444 and conserved domain: pfam01381

>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.

Probab=98.62  E-value=6.4e-08  Score=71.36  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r   13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL   72 (223)
Q Consensus        13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l   72 (223)
T Consensus         1 ir~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~-----~p~~~~l~~ia~~l~v~~~~l   55 (55)
T pfam01381         1 LKELREELGLSQEELAEKLGVSRSTISKIENGKR-----EPSLETLKKLAEALGVSLDEL   55 (55)
T ss_pred             CHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCHHHC
T ss_conf             9898978299899999998969999999987999-----999999999999978979879