HHsearch alignment for GI: 254780444 and conserved domain: pfam07022
>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.
Probab=98.01 E-value=1.5e-05 Score=56.02 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCC-HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999999964999-88999982899879889975157887557798999998732187521000011112
Q gi|254780444|r 12 AIDRMAERHNLT-PSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79 (223)
Q Consensus 12 ~i~~l~~~~gls-~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~~~ 79 (223)
T Consensus 2 vi~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~~------~P~e~iv~~~~~tGvsl~WL~~G~G~~ 64 (65)
T pfam07022 2 VIERLMKAYGFKSRSELADHLGVSKSTLSTWYKRDS------FPAEWVIRCALETGVSLDWLATGDGEL 64 (65)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC------CCHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 899999996888699999996988888999998699------989999999999882999997089999