HHsearch results for GI: 254780444 and protein with PDBid: 1kca_A
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.79 E-value=1.1e-18 Score=139.57 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=79.6
Q ss_pred CCCCEEEEEECCCCC------CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEE
Q ss_conf 368559999628332------42148786899936897405888999971796899999997798799996858988758
Q gi|254780444|r 133 IQTQDTRHKTQDTSM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDT 206 (223)
Q Consensus 133 ~~~~~~~l~V~GDSM------~P~i~~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~ 206 (223)
.++++|+++|+|||| +|.|++||+|+||++.++.+|++|+|...++++++|||.+. ++.++|.|+||+|+++.
T Consensus 9 ~~~~~F~l~V~GdSM~~~~g~ep~i~~GdiviVd~~~~~~~G~ivva~~~~~~~~~Krl~~~-~~~i~L~s~Np~y~~i~ 87 (109)
T 1kca_A 9 ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD-SGQVFLQPLNPQYPMIP 87 (109)
T ss_dssp CCSSCEEEECCSSTTCCCTTCSSCCCTTCEEEEETTSCCCTTCEEEEECSTTCEEEEEEEEE-TTEEEEECSSTTSCCEE
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEE-CCEEEEEECCCCCCCEE
T ss_conf 79999999997866788866789639999999982586678999999996999999999997-99899997998989891
Q ss_pred ECHHHEEEEEEEEEE
Q ss_conf 547865999779985
Q gi|254780444|r 207 VEMSDIEWIARILWA 221 (223)
Q Consensus 207 i~~~~i~iigrVvw~ 221 (223)
++ ++++|+|+|||.
T Consensus 88 ~~-~~~~IiG~Vv~~ 101 (109)
T 1kca_A 88 CN-ESCSVVGKVIAS 101 (109)
T ss_dssp CC-TTCEEEEEEEEE
T ss_pred CC-CCCEEEEEEEEE
T ss_conf 69-984999999889