HHsearch results for GI: 254780444 and protein with PDBid: 1y9q_A

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.31  E-value=5.8e-11  Score=89.65  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r    6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF   77 (223)
Q Consensus         6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~   77 (223)
                      ..+|+++|+++|+++|||+.+||+++|++.+++++|++|...     |+.++|.+||+++++++.+|.....
T Consensus         9 ~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~-----ps~~~l~~ia~~l~v~~~~l~~~~~   75 (192)
T 1y9q_A            9 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESS-----PTIATLWKIASGLEASFSAFFANDP   75 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSC-----CCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             999999999999981999999999989399999999869987-----7634799999885568999547996