HHsearch results for GI: 254780444 and protein with PDBid: 3ivp_A

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}

Probab=98.98  E-value=1.6e-09  Score=80.36  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r    6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF   77 (223)
Q Consensus         6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~   77 (223)
                      ...|+++|+.+|+++||||.+||.++|++++++++|++|..     .|+.+.|.++|++++++++|++....
T Consensus        10 ~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~-----~ps~~~l~~ia~~l~v~~~~l~~~~~   76 (126)
T 3ivp_A           10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQ-----HPSLQVLYDLVSLLNVSVDEFFLPAS   76 (126)
T ss_dssp             THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCSHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC-----CCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             99999999999998499999996730999879999970777-----99999999999997968999828887