HHSEARCH alignment of GI: 254780444 and SCOP domain: d1hlva1

Alignment

Probab=94.16  E-value=0.057  Score=29.88  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             7755899999999999964999889999828998798899751
Q gi|254780444|r    2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF   44 (223)
Q Consensus         2 ~~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~   44 (223)
                      +.||.++=.+.|+.+-....++|+++|+..||+.+||+.|.+.
T Consensus         6 k~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn   48 (66)
T d1hlva1           6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN   48 (66)
T ss_dssp             CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             3377999999999998087210999999959976479999987

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]