HHSEARCH alignment of GI: 254780444 and SCOP domain: d1ijwc_

Alignment

Probab=95.74  E-value=0.0099  Score=34.78  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             77558999999999999649998899998289987988997
Q gi|254780444|r    2 TSFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         2 ~~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~   42 (223)
                      ..||.+++.++ .+|++ .|.|.+++|+..|||.+||.+|.
T Consensus         4 ~~lt~~q~~~a-~~l~~-~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           4 RAINKHEQEQI-SRLLE-KGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             CSSCHHHHHHH-HHHHH-TTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             CCCCHHHHHHH-HHHHH-CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             85999999999-99998-89979999999796999998557

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic